Citrus Sinensis ID: 013922

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
MELCITNSTRILNLNSLNRTGLPLSVSLKNSTVEFMNQNYFNSQKLSSFSRQIHLYLHQPQFHRSPVRIFASSSSSVALGPEKDRLPADIEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDTAAQQAAEEELRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQV
ccEEEEEcEEEEEcccccccccccccccccccEEEcccccccccccccHHHcccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEcHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHcccccccEEEEEEEEEcccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEEEccccccccccccccccccEEEEcccccccccHHHHHcccccccEEEEEEEccccccccccccccEEEEEEEcEEEccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccc
cEEEEEEccEEEEccccccccccHHHEcccccEEcccccccccccccccccccEcccccccccccccEEEEccccccEEccccccccccEEEEEEEccccEEEEEEEEcHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEccccccEEEEEEEEEEEEEEEcccccEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHEEEcccHHHHcccEEEEEEEEEEccccccccEEcccccccccEEEEccccccccccHcccEccccccEEEEEEEccHHHcHHHcccccEEEEEEEEEEEccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcc
melcitnstrilnlnslnrtglplsvslknstvefmnqnyfnsqklssfSRQIHLylhqpqfhrspvrifasssssvalgpekdrlpadievtespepnstvrlsvevpeavcKDSYKRVLNELMKQVkipgfrpgkipesvlVGFVGEQNVKKATVESILKRtlphamtsvTGRALRDSVRIVTKFSEMEKNYsslnslsydvlvdvapevkwnpgngyknlKIVVEIDNDTAAQQAAEEELRRRHKSLgslkivtdrglqvgdiaIVDIsattidedesnvqnipdaetkgfhfdtedgdkvlpgfldsisgiqrgetksfrlafpESWRQEHLRGVQAQFTVECRELFYrdlpklddslagkllpgctTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQV
MELCITNStrilnlnslnrtglPLSVSLKNSTVEFMNQNYFNSQKLSSFSRQIHLYLHQPQFHRSPVRIFASSSSSVALGPEKDRLPADIEvtespepnstvrlsvevpeavCKDSYKRVLNELMKQvkipgfrpgkIPESVLVGFVGEQNVKKATVESilkrtlphamtsvtgralrdSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDTAAQQAAEEELRrrhkslgslkivtdrglqvgdIAIVDISattidedesnvqNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEqtakdqatdnAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQV
MELCITNSTRILNLNSLNRTGLPLSVSLKNSTVEFMNQNYFNSQKLSSFSRQIHLYLHQPQFHRSPVRIFASSSSSVALGPEKDRLPADIEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDTaaqqaaeeeLRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQV
***CITNSTRILNLNSLNRTGLPLSVSLKNSTVEFMNQNYFNSQKLSSFSRQIHLYLHQPQFHRSPVRIF***********************************VEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDN******************LGSLKIVTDRGLQVGDIAIVDISATTID***************GFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYG********
******NSTRILNLNSLNR*******************************************************************************NSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDTAAQQAAEEELRRRHKSLG**KIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLL*****************AILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQ*
MELCITNSTRILNLNSLNRTGLPLSVSLKNSTVEFMNQNYFNSQKLSSFSRQIHLYLHQPQFHRSPVRIFASSSSSVALGPEKDRLPADIEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDTA***********RHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQV
MELCITNSTRILNLNSLNRTGLPLSVSLKNSTVEFMNQNYFNSQKLSSFSRQIHLYLHQPQFHRSPVRIFASSSSSVALGPEKDRLPADIEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDTAAQQAAEEELRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQM**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MELCITNSTRILNLNSLNRTGLPLSVSLKNSTVEFMNQNYFNSQKLSSFSRQIHLYLHQPQFHRSPVRIFASSSSSVALGPEKDRLPADIEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDTAAQQAAEEELRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query434 2.2.26 [Sep-21-2011]
Q8S9L5 547 Trigger factor-like prote yes no 0.993 0.787 0.588 1e-151
B0JL93 464 Trigger factor OS=Microcy yes no 0.746 0.698 0.288 3e-38
Q118P4 485 Trigger factor OS=Trichod yes no 0.758 0.678 0.275 2e-37
Q935Z3 474 Trigger factor OS=Synecho yes no 0.716 0.656 0.294 8e-36
Q5N1P5 474 Trigger factor OS=Synecho yes no 0.716 0.656 0.294 9e-36
Q3M725 471 Trigger factor OS=Anabaen yes no 0.737 0.679 0.286 1e-34
Q8YQX9 471 Trigger factor OS=Nostoc yes no 0.737 0.679 0.284 3e-34
B1XL18 454 Trigger factor OS=Synecho yes no 0.751 0.718 0.289 1e-33
B7JW76 455 Trigger factor OS=Cyanoth yes no 0.774 0.738 0.268 2e-33
Q7V9L7 467 Trigger factor OS=Prochlo yes no 0.725 0.674 0.272 9e-32
>sp|Q8S9L5|TIG_ARATH Trigger factor-like protein TIG OS=Arabidopsis thaliana GN=TIG PE=2 SV=1 Back     alignment and function desciption
 Score =  535 bits (1378), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 260/442 (58%), Positives = 350/442 (79%), Gaps = 11/442 (2%)

Query: 1   MELCITNSTRILN-----LNSLNRTGLPLSVSLKNSTVEF---MNQNYFNSQKLSSFSRQ 52
           MELC+ ++T  +      L S+ R  +   +   +S ++F   + +       +S  SR+
Sbjct: 1   MELCVISTTTTVKAINPFLPSITRR-VSSRLFQSDSVLQFGGRLKKPISRPLDMSCVSRK 59

Query: 53  IHLYLHQPQFHRSPVRIFASSSSSVALGPEKDRLPADIEVTESPEPNSTVRLSVEVPEAV 112
           I  +      H    R+FA++S +V    ++D+LPAD++VTE+ + NS+V+LSVEVPE V
Sbjct: 60  IGFF-GDFMSHGGNFRLFAAASPAVETSVKEDKLPADLKVTETVQANSSVKLSVEVPEIV 118

Query: 113 CKDSYKRVLNELMKQVKIPGFRPG-KIPESVLVGFVGEQNVKKATVESILKRTLPHAMTS 171
           C+D Y+RVL E MK  K+PGFRP  ++PE+++VGFVG Q V +ATVESILKRTLPHAM S
Sbjct: 119 CEDCYQRVLTEFMKLSKVPGFRPKTRVPENIIVGFVGRQYVLRATVESILKRTLPHAMES 178

Query: 172 VTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDN 231
           VTGRAL+DS++IV+ F +MEK YS L +LSY+V+VDV PE+KWNP +GYKN+K+VVE+ +
Sbjct: 179 VTGRALKDSIQIVSSFPDMEKAYSKLKTLSYEVVVDVVPELKWNPEDGYKNMKVVVELGD 238

Query: 232 DTAAQQAAEEELRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAET 291
           +  A++A E +LR+++KSLG+LKIVT+RGLQVGD+A+VDISATTIDED S  Q IPDAE+
Sbjct: 239 EIDAKKACERQLRQKYKSLGALKIVTERGLQVGDLAVVDISATTIDEDGSTGQAIPDAES 298

Query: 292 KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELF 351
           KGFHFDTE+G+++LPGFLD+I GI+ GE+KSF L FPESW+QE LRG +AQFTV+C+ELF
Sbjct: 299 KGFHFDTEEGNRLLPGFLDAIIGIRAGESKSFTLVFPESWKQESLRGQRAQFTVDCKELF 358

Query: 352 YRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEID 411
           YRDLP LDDSLA KLLPGCTT+++V+ETL ++C+E+EQ AK+QATDNAIL+Q+ KMVE++
Sbjct: 359 YRDLPTLDDSLADKLLPGCTTLKEVEETLAKRCQEMEQEAKEQATDNAILEQIRKMVEVE 418

Query: 412 IPQSLFEEQGRQLYGAQLLQMQ 433
           IPQSLFEEQGRQ YGA+LL++Q
Sbjct: 419 IPQSLFEEQGRQFYGARLLEIQ 440
Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8
>sp|B0JL93|TIG_MICAN Trigger factor OS=Microcystis aeruginosa (strain NIES-843) GN=tig PE=3 SV=1 Back     alignment and function description
>sp|Q118P4|TIG_TRIEI Trigger factor OS=Trichodesmium erythraeum (strain IMS101) GN=tig PE=3 SV=1 Back     alignment and function description
>sp|Q935Z3|TIG_SYNE7 Trigger factor OS=Synechococcus elongatus (strain PCC 7942) GN=tig PE=3 SV=1 Back     alignment and function description
>sp|Q5N1P5|TIG_SYNP6 Trigger factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tig PE=3 SV=1 Back     alignment and function description
>sp|Q3M725|TIG_ANAVT Trigger factor OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=tig PE=3 SV=1 Back     alignment and function description
>sp|Q8YQX9|TIG_NOSS1 Trigger factor OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=tig PE=3 SV=1 Back     alignment and function description
>sp|B1XL18|TIG_SYNP2 Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=tig PE=3 SV=1 Back     alignment and function description
>sp|B7JW76|TIG_CYAP8 Trigger factor OS=Cyanothece sp. (strain PCC 8801) GN=tig PE=3 SV=1 Back     alignment and function description
>sp|Q7V9L7|TIG_PROMA Trigger factor OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=tig PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query434
255580756 542 Trigger factor, putative [Ricinus commun 0.986 0.789 0.709 1e-173
224133304528 predicted protein [Populus trichocarpa] 0.958 0.787 0.691 1e-172
225460855 536 PREDICTED: trigger factor isoform 1 [Vit 0.877 0.710 0.722 1e-165
356552817 545 PREDICTED: trigger factor-like [Glycine 0.983 0.783 0.657 1e-161
356501570 542 PREDICTED: trigger factor-like [Glycine 0.976 0.782 0.659 1e-161
449503201 538 PREDICTED: trigger factor-like protein T 0.907 0.732 0.695 1e-159
449463242 538 PREDICTED: trigger factor-like protein T 0.907 0.732 0.692 1e-158
297792999 551 trigger factor type chaperone family pro 0.843 0.664 0.670 1e-149
22327852 547 trigger factor type chaperone family pro 0.993 0.787 0.588 1e-149
357494705 561 Trigger factor [Medicago truncatula] gi| 0.882 0.682 0.673 1e-148
>gi|255580756|ref|XP_002531199.1| Trigger factor, putative [Ricinus communis] gi|223529201|gb|EEF31176.1| Trigger factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 312/440 (70%), Positives = 366/440 (83%), Gaps = 12/440 (2%)

Query: 1   MELCITNSTRILNLNSLNRTGL----PL-SVSLKNSTVEFMN-QNYFNSQKLSSFSRQIH 54
           MELCI  S  +LN N      L    PL SV+L+   +EF N +N    QK+ S SRQ H
Sbjct: 1   MELCI-RSRLLLNWNQKQNLQLLGKRPLFSVTLRTQFLEFKNNKNLVCIQKVPSISRQTH 59

Query: 55  LYLHQPQFHRSPVRIFASSSSSVALGPEKDRLPADIEVTESPEPNSTVRLSVEVPEAVCK 114
               +  F     +  A+S SSVA+GPEKD+LPADI+V ES EPNST+RL+VEVP AVC 
Sbjct: 60  ----RQAFVVCARKSAAASDSSVAVGPEKDKLPADIKVIESQEPNSTLRLTVEVPPAVCD 115

Query: 115 DSYKRVLNELMKQVKIPGFRPGK-IPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVT 173
           D YKRV+NE MKQ KIPGFRPGK +PES+L+ +VG++NV+KATVES+LKRTLPHAM+SVT
Sbjct: 116 DCYKRVMNEFMKQAKIPGFRPGKNVPESILMSYVGKENVQKATVESVLKRTLPHAMSSVT 175

Query: 174 GRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDT 233
           GRAL+DSVRI TKFS+MEK+YSSLNSL YDV+VDVAPEVKW   N YKNLKIVVEID+D 
Sbjct: 176 GRALKDSVRIATKFSDMEKDYSSLNSLRYDVIVDVAPEVKWMSENAYKNLKIVVEIDSDI 235

Query: 234 AAQQAAEEELRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKG 293
            A +A+E+ELR R KSLG+LKIVTDRGLQ+GD+A++DISAT  DED+S VQNIPDAE+KG
Sbjct: 236 DALRASEKELRHRQKSLGALKIVTDRGLQIGDVAVIDISATKTDEDKSKVQNIPDAESKG 295

Query: 294 FHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYR 353
           FHFDTEDGDKVLPGFLDSI GIQRGETKSF L FPESW QE LRGV AQFTVEC+ELFYR
Sbjct: 296 FHFDTEDGDKVLPGFLDSIIGIQRGETKSFPLVFPESWNQESLRGVHAQFTVECKELFYR 355

Query: 354 DLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIP 413
           D+P+LDDSLA KL+PGCTT+++VKE+LLQ+C EVE++AKDQATDNAILDQL KMVE+DIP
Sbjct: 356 DVPELDDSLADKLVPGCTTLQEVKESLLQRCLEVERSAKDQATDNAILDQLCKMVEVDIP 415

Query: 414 QSLFEEQGRQLYGAQLLQMQ 433
           +SLFEEQGRQLYGA+LLQ+Q
Sbjct: 416 KSLFEEQGRQLYGARLLQIQ 435

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224133304|ref|XP_002321534.1| predicted protein [Populus trichocarpa] gi|222868530|gb|EEF05661.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225460855|ref|XP_002277545.1| PREDICTED: trigger factor isoform 1 [Vitis vinifera] gi|297737496|emb|CBI26697.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356552817|ref|XP_003544759.1| PREDICTED: trigger factor-like [Glycine max] Back     alignment and taxonomy information
>gi|356501570|ref|XP_003519597.1| PREDICTED: trigger factor-like [Glycine max] Back     alignment and taxonomy information
>gi|449503201|ref|XP_004161884.1| PREDICTED: trigger factor-like protein TIG-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449463242|ref|XP_004149343.1| PREDICTED: trigger factor-like protein TIG-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297792999|ref|XP_002864384.1| trigger factor type chaperone family protein [Arabidopsis lyrata subsp. lyrata] gi|297310219|gb|EFH40643.1| trigger factor type chaperone family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22327852|ref|NP_200333.2| trigger factor type chaperone family protein [Arabidopsis thaliana] gi|75160622|sp|Q8S9L5.1|TIG_ARATH RecName: Full=Trigger factor-like protein TIG; AltName: Full=Immunophilin TIG; AltName: Full=Peptidyl-prolyl cis-trans isomerase TIG; Short=PPIase TIG; AltName: Full=Rotamase gi|18650596|gb|AAL75898.1| AT5g55220/MCO15_17 [Arabidopsis thaliana] gi|25141197|gb|AAN73293.1| At5g55220/MCO15_17 [Arabidopsis thaliana] gi|332009218|gb|AED96601.1| trigger factor type chaperone family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357494705|ref|XP_003617641.1| Trigger factor [Medicago truncatula] gi|355518976|gb|AET00600.1| Trigger factor [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query434
TAIR|locus:2161640 547 AT5G55220 "AT5G55220" [Arabido 0.993 0.787 0.583 1.4e-133
TIGR_CMR|CHY_0324 427 CHY_0324 "trigger factor" [Car 0.587 0.597 0.255 4.7e-16
TIGR_CMR|DET_0709 448 DET_0709 "trigger factor" [Deh 0.389 0.377 0.25 1.6e-15
TIGR_CMR|SO_1793 434 SO_1793 "trigger factor" [Shew 0.387 0.387 0.274 4.6e-12
UNIPROTKB|Q9KQS5 433 tig "Trigger factor" [Vibrio c 0.294 0.295 0.282 1.3e-11
TIGR_CMR|VC_1923 433 VC_1923 "trigger factor" [Vibr 0.294 0.295 0.282 1.3e-11
UNIPROTKB|O53189 466 tig "Trigger factor" [Mycobact 0.421 0.392 0.270 1.6e-11
TIGR_CMR|BA_4705425 BA_4705 "trigger factor" [Baci 0.578 0.590 0.225 4.7e-11
TIGR_CMR|SPO_2288 443 SPO_2288 "trigger factor" [Rue 0.269 0.264 0.297 9e-11
TIGR_CMR|GSU_1793 431 GSU_1793 "trigger factor" [Geo 0.474 0.477 0.238 1.1e-09
TAIR|locus:2161640 AT5G55220 "AT5G55220" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1309 (465.8 bits), Expect = 1.4e-133, P = 1.4e-133
 Identities = 258/442 (58%), Positives = 346/442 (78%)

Query:     1 MELCITNST---RILN--LNSLNRTGLPLSVSLKNSTVEF---MNQNYFNSQKLSSFSRQ 52
             MELC+ ++T   + +N  L S+ R  +   +   +S ++F   + +       +S  SR+
Sbjct:     1 MELCVISTTTTVKAINPFLPSITRR-VSSRLFQSDSVLQFGGRLKKPISRPLDMSCVSRK 59

Query:    53 IHLYLHQPQFHRSPVRIFASSSSSVALGPEKDRLPADIEVTESPEPNSTVRLSVEVPEAV 112
             I  +      H    R+FA++S +V    ++D+LPAD++VTE+ + NS+V+LSVEVPE V
Sbjct:    60 IGFF-GDFMSHGGNFRLFAAASPAVETSVKEDKLPADLKVTETVQANSSVKLSVEVPEIV 118

Query:   113 CKDSYKRVLNELMKQVKIPGFRPG-KIPESVLVGFVGEQNVKKATVESILKRTLPHAMTS 171
             C+D Y+RVL E MK  K+PGFRP  ++PE+++VGFVG Q V +ATVESILKRTLPHAM S
Sbjct:   119 CEDCYQRVLTEFMKLSKVPGFRPKTRVPENIIVGFVGRQYVLRATVESILKRTLPHAMES 178

Query:   172 VTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDN 231
             VTGRAL+DS++IV+ F +MEK YS L +LSY+V+VDV PE+KWNP +GYKN+K+VVE+ +
Sbjct:   179 VTGRALKDSIQIVSSFPDMEKAYSKLKTLSYEVVVDVVPELKWNPEDGYKNMKVVVELGD 238

Query:   232 DTXXXXXXXXXLRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAET 291
             +          LR+++KSLG+LKIVT+RGLQVGD+A+VDISATTIDED S  Q IPDAE+
Sbjct:   239 EIDAKKACERQLRQKYKSLGALKIVTERGLQVGDLAVVDISATTIDEDGSTGQAIPDAES 298

Query:   292 KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELF 351
             KGFHFDTE+G+++LPGFLD+I GI+ GE+KSF L FPESW+QE LRG +AQFTV+C+ELF
Sbjct:   299 KGFHFDTEEGNRLLPGFLDAIIGIRAGESKSFTLVFPESWKQESLRGQRAQFTVDCKELF 358

Query:   352 YRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEID 411
             YRDLP LDDSLA KLLPGCTT+++V+ETL ++C+E+EQ AK+QATDNAIL+Q+ KMVE++
Sbjct:   359 YRDLPTLDDSLADKLLPGCTTLKEVEETLAKRCQEMEQEAKEQATDNAILEQIRKMVEVE 418

Query:   412 IPQSLFEEQGRQLYGAQLLQMQ 433
             IPQSLFEEQGRQ YGA+LL++Q
Sbjct:   419 IPQSLFEEQGRQFYGARLLEIQ 440
GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS
GO:0006457 "protein folding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015031 "protein transport" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010103 "stomatal complex morphogenesis" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA
GO:0016556 "mRNA modification" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
TIGR_CMR|CHY_0324 CHY_0324 "trigger factor" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0709 DET_0709 "trigger factor" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1793 SO_1793 "trigger factor" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQS5 tig "Trigger factor" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1923 VC_1923 "trigger factor" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|O53189 tig "Trigger factor" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4705 BA_4705 "trigger factor" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2288 SPO_2288 "trigger factor" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1793 GSU_1793 "trigger factor" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8S9L5TIG_ARATH5, ., 2, ., 1, ., 80.58820.99300.7879yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
TIGR00115408 TIGR00115, tig, trigger factor 5e-44
PRK01490 435 PRK01490, tig, trigger factor; Provisional 2e-43
COG0544 441 COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans 5e-42
pfam05697145 pfam05697, Trigger_N, Bacterial trigger factor pro 2e-17
pfam05698162 pfam05698, Trigger_C, Bacterial trigger factor pro 5e-07
pfam0025494 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t 0.004
>gnl|CDD|232831 TIGR00115, tig, trigger factor Back     alignment and domain information 
 Score =  158 bits (401), Expect = 5e-44
 Identities = 95/342 (27%), Positives = 169/342 (49%), Gaps = 40/342 (11%)

Query: 102 VRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESIL 161
            +L+VEVP    ++   + L EL K VKIPGFR GK+P SV+    G++ V++  +  +L
Sbjct: 1   RKLTVEVPAEEVEEEVDKALKELAKTVKIPGFRKGKVPRSVVEKRYGKE-VRQEALNELL 59

Query: 162 KRTLPHAMTSVTGRALRDSVRIVT----KFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPG 217
           +     A+         + +R +     +  E+E        L +    +V PEV+   G
Sbjct: 60  QEAFSEAVKE-------EKIRPIGQPEIEVKELEDG----KDLEFTAEFEVYPEVE--LG 106

Query: 218 NGYKNLKI---VVEIDNDTAAQQAAEEELRRRHKSLGSLKIVTDRGLQVGDIAIVDISAT 274
           + YK +++    VE+       +  +EEL +  +   +L  V  R  + GD   +D    
Sbjct: 107 D-YKGIEVEKPEVEVT-----DEDVDEELEKLREQNATLVPVERRAAEKGDRVTIDFEG- 159

Query: 275 TIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQE 334
            ID +          + + F  +   G + +PGF + + G++ GE K  ++ FPE +  E
Sbjct: 160 FIDGEA-----FEGGKAENFSLELGSG-QFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAE 213

Query: 335 HLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETL---LQKCREVEQTA 391
            L G +A F V  +E+  ++LP+LDD  A  L     T+E++K  +   L+  RE ++ A
Sbjct: 214 ELAGKEATFKVTVKEVKEKELPELDDEFAKSLGEEFETLEELKADIRKNLE--REKKERA 271

Query: 392 KDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQ 433
           K++  +  +LD+L +  E ++P+SL E++  +L    L Q+Q
Sbjct: 272 KNKLKE-QLLDKLVENNEFELPESLVEQEIDRLLEQALQQLQ 312

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome [Protein fate, Protein folding and stabilization]. Length = 408
>gnl|CDD|234956 PRK01490, tig, trigger factor; Provisional Back     alignment and domain information
>gnl|CDD|223618 COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|218700 pfam05697, Trigger_N, Bacterial trigger factor protein (TF) Back     alignment and domain information
>gnl|CDD|218701 pfam05698, Trigger_C, Bacterial trigger factor protein (TF) C-terminus Back     alignment and domain information
>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 434
COG0544 441 Tig FKBP-type peptidyl-prolyl cis-trans isomerase 100.0
PRK01490 435 tig trigger factor; Provisional 100.0
TIGR00115408 tig trigger factor. Trigger factor is a ribosome-a 100.0
PF05697145 Trigger_N: Bacterial trigger factor protein (TF); 99.96
PF0025494 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer 99.1
COG1047174 SlpA FKBP-type peptidyl-prolyl cis-trans isomerase 98.92
PRK15095156 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 98.87
PRK10737196 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 98.85
TIGR03516177 ppisom_GldI peptidyl-prolyl isomerase, gliding mot 98.49
KOG0549188 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.45
COG0545205 FkpA FKBP-type peptidyl-prolyl cis-trans isomerase 98.42
KOG0544108 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.39
PRK10902269 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 98.38
PF05698162 Trigger_C: Bacterial trigger factor protein (TF) C 98.37
KOG0552226 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.17
PRK11570206 peptidyl-prolyl cis-trans isomerase; Provisional 98.02
PRK04980102 hypothetical protein; Provisional 91.67
KOG0543 397 consensus FKBP-type peptidyl-prolyl cis-trans isom 89.69
cd06552100 ASCH_yqfb_like ASC-1 homology domain, subfamily si 89.24
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=4.2e-66  Score=534.89  Aligned_cols=318  Identities=29%  Similarity=0.496  Sum_probs=296.1

Q ss_pred             cEEEEEeCCCceEEEEEEEchhhHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHHHH
Q 013922           90 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAM  169 (434)
Q Consensus        90 m~V~~e~~~~~~~~l~V~v~~~ev~~~~~kal~~~~k~akIPGFRkGKvP~~iI~~~yG~~~i~~e~~~~li~~~~~~ai  169 (434)
                      |+|++++++++.++++|+||++.+++++++++++++++++||||||||||++||+++|| .++++++++++++.+|.+++
T Consensus         1 M~v~~e~~~~~~~~l~v~vp~~~~~~~~~~~~~~~~k~v~IpGFRkGKvP~~ii~~ryg-~~v~~d~~~~ll~~~~~~a~   79 (441)
T COG0544           1 MKVTVEKLEGLEVRLTVEVPAEEIKKALDKALKKLAKKVKIPGFRKGKVPRKVIEQRYG-EAVRQDVLNELLPEAFEEAI   79 (441)
T ss_pred             CCeeeeecCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCcCCCCCCCCCCHHHHHHHHh-HHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999 59999999999999999999


Q ss_pred             HhhhcccCCcccccccccchhhhccCCCCceEEEEEEeeecceecCCCCCcceeEEEEe----cchhhHHHHHHHHHHHH
Q 013922          170 TSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVE----IDNDTAAQQAAEEELRR  245 (434)
Q Consensus       170 ~e~~~~~l~~~~~i~~~~~~~~~~~~~~~~f~f~v~~ev~Pev~l~~~~~yk~i~v~v~----~dedv~~~~~~e~~L~~  245 (434)
                      ++.++.|++.| .+.  +    ..++++++|+|++.|+|+|+|+++   ||++|+|+++    +++||+.      .|+.
T Consensus        80 ~e~~~~~~~~p-~~~--~----~~~e~~~~~~f~~~~ev~Pev~l~---d~~~i~v~~~~~ev~d~dvd~------~L~~  143 (441)
T COG0544          80 KEEGLKPAGQP-EIE--I----TEFEKGEDFEFTAEVEVYPEVELG---DYKGIEVEKPVVEVTDEDVDE------ELEK  143 (441)
T ss_pred             HHhCcCcCCCC-Ccc--c----ccccCCCceEEEEEEEEeeceecC---ccccceeecCCcccCHHHHHH------HHHH
Confidence            99999998875 221  1    246778889999999999999997   9999999986    3455554      6788


Q ss_pred             HHhhcCccccccCCCCCcCcEEEEEEEEEeeccCCCCCcccCCCcccCEEEEecCCCCCCccHHHHhcCCCCCceEEEEE
Q 013922          246 RHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRL  325 (434)
Q Consensus       246 ~~~~~a~~~~v~dr~~q~GD~V~vd~~~~~~~~d~~~G~~i~~~~~~~~~l~lg~~~~~~p~fe~~LiG~k~Ge~~~~~i  325 (434)
                      .++++++|.++.++ ++.||.|+|||.|+      .||++|+|++.++|.|.+| .++|+|||+++|+|||+||+++|++
T Consensus       144 l~~~~a~~~~~e~~-a~~gD~v~IDf~g~------iDg~~fegg~ae~~~l~lG-s~~fipgFe~~LvG~k~Ge~k~i~v  215 (441)
T COG0544         144 LRKRFATLEPVEGA-AENGDRVTIDFEGS------VDGEEFEGGKAENFSLELG-SGRFIPGFEDQLVGMKAGEEKDIKV  215 (441)
T ss_pred             HHHhcCcccccccc-cccCCEEEEEEEEE------EcCeeccCccccCeEEEEc-CCCchhhHHhhhccCcCCCeeEEEE
Confidence            88889999887555 99999999999998      6899999999999999999 5799999999999999999999999


Q ss_pred             cCCCCCCCCCCCCceeEEEEEEEEeecCCCCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013922          326 AFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLY  405 (434)
Q Consensus       326 ~fPed~~~~~laGk~v~f~V~Ik~Ik~~~lPELdDefak~l~~~~~Tleelr~~Ike~l~~~~~~~~~~~~~~~ll~~L~  405 (434)
                      +||++|+.++|+||.++|+|+|++|+++++||||||||++++... |+++||+.||++|+.+.+.+.++..+++++++|.
T Consensus       216 tFP~dy~a~~LaGK~a~F~V~vkeVk~~elpEldDEfAk~~~~~~-tL~~Lk~~~r~~le~~~~~~~~~~~~~~~~~~L~  294 (441)
T COG0544         216 TFPEDYHAEELAGKEATFKVKVKEVKKRELPELDDEFAKKLGEED-TLEELKEKLRKNLERELKEATLEKRKEQLLDALV  294 (441)
T ss_pred             EcccccchhHhCCCceEEEEEEEEEeecCCCCCCHHHHHhcCccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999996434 9999999999999999999999999999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHHHHHHhcc
Q 013922          406 KMVEIDIPQSLFEEQGRQLYGAQLLQMQ  433 (434)
Q Consensus       406 e~~~~dlPeslv~~e~~~~~~~~l~~lq  433 (434)
                      +.+.|++|++||+++++++++++++++|
T Consensus       295 e~~~~dlP~sli~~E~~~l~~~~~~~l~  322 (441)
T COG0544         295 EANDFDLPESLVEAEIDNLLKQALQQLQ  322 (441)
T ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999886

>PRK01490 tig trigger factor; Provisional Back     alignment and domain information
>TIGR00115 tig trigger factor Back     alignment and domain information
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state Back     alignment and domain information
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5 Back     alignment and domain information
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated Back     alignment and domain information
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>PF05698 Trigger_C: Bacterial trigger factor protein (TF) C-terminus; InterPro: IPR008880 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state Back     alignment and domain information
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>PRK04980 hypothetical protein; Provisional Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06552 ASCH_yqfb_like ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
1t11_A392 Trigger Factor Length = 392 3e-12
1w26_A 432 Trigger Factor In Complex With The Ribosome Forms A 3e-11
1l1p_A106 Solution Structure Of The Ppiase Domain From E. Col 1e-05
2d3o_1112 Structure Of Ribosome Binding Domain Of The Trigger 7e-05
2aar_7113 Structure Of Trigger Factor Binding Domain In Biolo 8e-05
3gty_X 433 Promiscuous Substrate Recognition In Folding And As 5e-04
3gu0_A 412 Promiscuous Substrate Recognition In Folding And As 5e-04
>pdb|1T11|A Chain A, Trigger Factor Length = 392 Back     alignment and structure 
Iteration: 1

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 140/321 (43%), Gaps = 27/321 (8%)
Query: 103 RLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILK 162
           RL++ VP A  +D+    L  + K  +  GFR GK+P  ++    G + V++  +  +++
Sbjct: 17  RLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYG-KAVRQDVLGEVMQ 75
Query: 163 RTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKN 222
           R   H + ++    +  +      F+ +E        L +    +V PEV+     G +N
Sbjct: 76  R---HFIEAIVKEKINPAG--APTFAPVE--IGEGKDLVFTATFEVYPEVEL---KGLEN 125
Query: 223 LKIVVEIDNDTXXXXXXXXXLRRRHKSLGSLKIVTDRGLQVGDIAIVDI--SATTIDEDE 280
             I VE              L    K   + K V D   + G    +D   S   ++ + 
Sbjct: 126 --IAVEKPAAEVTDADVAEMLETLRKQQATWKEV-DEAAENGKRVSIDFVGSIDGVEFEG 182
Query: 281 SNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQ 340
              +N P     G         +++PGF D I G  +G      + FPE +  E+L+G  
Sbjct: 183 GKAENFPLEMGAG---------RMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENLKGKA 233
Query: 341 AQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKC-REVEQTAKDQATDNA 399
           A+F ++  ++  R+LP+L+D    +       ++ +K  + +   RE++Q  K +  + A
Sbjct: 234 AKFAIKVNKVEARELPELNDEFVARFGVAEGGVDALKAEVRKNMERELKQAIKARIKEQA 293
Query: 400 ILDQLYKMVEIDIPQSLFEEQ 420
           I + L K  EI +P +L +++
Sbjct: 294 I-EGLVKENEIQVPSALIDQE 313
>pdb|1W26|A Chain A, Trigger Factor In Complex With The Ribosome Forms A Molecular Cradle For Nascent Proteins Length = 432 Back     alignment and structure
>pdb|1L1P|A Chain A, Solution Structure Of The Ppiase Domain From E. Coli Trigger Factor Length = 106 Back     alignment and structure
>pdb|2D3O|1 Chain 1, Structure Of Ribosome Binding Domain Of The Trigger Factor On The 50s Ribosomal Subunit From D. Radiodurans Length = 112 Back     alignment and structure
>pdb|2AAR|7 Chain 7, Structure Of Trigger Factor Binding Domain In Biologically Homologous Complex With Eubacterial Ribosome Length = 113 Back     alignment and structure
>pdb|3GTY|X Chain X, Promiscuous Substrate Recognition In Folding And Assembly Activities Of The Trigger Factor Chaperone Length = 433 Back     alignment and structure
>pdb|3GU0|A Chain A, Promiscuous Substrate Recognition In Folding And Assembly Activities Of The Trigger Factor Chaperone Length = 412 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
1t11_A392 Trigger factor, TF; helix-turn-helix, four-helix-b 7e-41
1w26_A 432 Trigger factor, TF; chaperone, protein folding, ri 5e-40
3gty_X 433 Trigger factor, TF; chaperone-client complex, cell 6e-35
2d3o_1112 Trigger factor, TF; ribosome, nascent chain, prote 2e-14
2nsc_A109 Trigger factor, TF; chaperone; 2.20A {Thermotoga m 3e-12
1p9y_A121 Trigger factor, TF; alpha-beta protein, isomerase; 2e-11
1hxv_A113 Trigger factor; FKBP fold, ppiase, chaperone; NMR 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
2nsa_A 170 Trigger factor, TF; chaperone; 1.70A {Thermotoga m 8e-04
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A Length = 392 Back     alignment and structure
 Score =  148 bits (377), Expect = 7e-41
 Identities = 68/338 (20%), Positives = 137/338 (40%), Gaps = 27/338 (7%)

Query: 99  NSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVE 158
               RL++ VP A  +D+    L  + K  +  GFR GK+P  ++    G+  V++  + 
Sbjct: 13  GLQRRLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGKA-VRQDVLG 71

Query: 159 SILKRTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGN 218
            +++R    A   +    +  +        E+ +       L +    +V PEV+     
Sbjct: 72  EVMQRHFIEA---IVKEKINPAGAPTFAPVEIGEG----KDLVFTATFEVYPEVELK--- 121

Query: 219 GYKNLKI---VVEIDNDTAAQQAAEEELRRRHKSLGSLKIVTDRGLQVGDIAIVDISATT 275
           G +N+ +     E+ +  A      E LR++  +        D   + G    +D   + 
Sbjct: 122 GLENIAVEKPAAEVTD--ADVAEMLETLRKQQATW----KEVDEAAENGKRVSIDFVGS- 174

Query: 276 IDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEH 335
           ID  E         + + F  +   G +++PGF D I G  +G      + FPE +  E+
Sbjct: 175 IDGVE-----FEGGKAENFPLEMGAG-RMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN 228

Query: 336 LRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQA 395
           L+G  A+F ++  ++  R+LP+L+D    +       ++ +K  + +      + A    
Sbjct: 229 LKGKAAKFAIKVNKVEARELPELNDEFVARFGVAEGGVDALKAEVRKNMERELKQAIKAR 288

Query: 396 TDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQ 433
                ++ L K  EI +P +L +++   L      +  
Sbjct: 289 IKEQAIEGLVKENEIQVPSALIDQEINVLRQQAAQRFG 326
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5 Length = 432 Back     alignment and structure
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A Length = 433 Back     alignment and structure
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7 Length = 112 Back     alignment and structure
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A Length = 109 Back     alignment and structure
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A* Length = 121 Back     alignment and structure
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1 Length = 113 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima} Length = 170 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query434
1t11_A392 Trigger factor, TF; helix-turn-helix, four-helix-b 100.0
1w26_A 432 Trigger factor, TF; chaperone, protein folding, ri 100.0
3gty_X 433 Trigger factor, TF; chaperone-client complex, cell 100.0
1p9y_A121 Trigger factor, TF; alpha-beta protein, isomerase; 99.96
2d3o_1112 Trigger factor, TF; ribosome, nascent chain, prote 99.94
2nsc_A109 Trigger factor, TF; chaperone; 2.20A {Thermotoga m 99.93
1hxv_A113 Trigger factor; FKBP fold, ppiase, chaperone; NMR 99.76
2pbc_A102 FK506-binding protein 2; endoplasmic reticulum, is 99.43
1r9h_A135 FKB-6, FK506 binding protein family; structural ge 99.34
2vn1_A129 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR 99.31
2k8i_A171 SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, 99.28
1yat_A113 FK506 binding protein; HET: FK5; 2.50A {Saccharomy 99.28
2ppn_A107 FK506-binding protein 1A; high resolution protein 99.25
2y78_A133 Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, 99.24
2lgo_A130 FKBP; infectious disease, isomerase, giardiasis, s 99.23
1jvw_A167 Macrophage infectivity potentiator; chagas disease 99.21
2kr7_A151 FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; 99.18
3pr9_A157 FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB 99.14
4dt4_A169 FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; 99.14
3kz7_A119 FK506-binding protein 3; FKPB ppiase rapamycin, is 99.13
4dip_A125 Peptidyl-prolyl CIS-trans isomerase FKBP14; struct 99.13
1u79_A129 FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T 99.1
2d9f_A135 FK506-binding protein 8 variant; FKBP, rapamycin, 99.09
2kfw_A196 FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD 99.09
3o5q_A128 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 99.08
3b7x_A134 FK506-binding protein 6; isomerase, repeat, rotama 99.08
2awg_A118 38 kDa FK-506 binding protein; FKBP-type, ppiase, 99.07
3prb_A231 FKBP-type peptidyl-prolyl CIS-trans isomerase; cha 99.07
3cgm_A158 SLYD, peptidyl-prolyl CIS-trans isomerase; chapero 99.05
3o5e_A144 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 99.05
1ix5_A151 FKBP; ppiase, isomerase; NMR {Methanothermococcust 99.02
2f4e_A180 ATFKBP42; FKBP-like, alpha-beta, signaling protein 98.99
2jwx_A157 FKBP38NTD, FK506-binding protein 8 variant; apopto 98.96
1q6h_A224 FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; 98.95
1fd9_A213 Protein (macrophage infectivity potentiator prote; 98.94
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 98.92
3jxv_A356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 98.9
3oe2_A219 Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, 98.85
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 98.84
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 98.81
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 98.81
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 98.78
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 98.55
2lkn_A165 AH receptor-interacting protein; FKBP-type domain, 98.51
1zxj_A218 MPN555, hypothetical protein Mg377 homolog; mostly 98.04
2nsa_A 170 Trigger factor, TF; chaperone; 1.70A {Thermotoga m 97.58
1p5q_A 336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 95.74
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 91.35
2f23_A156 Anti-cleavage anti-GREA transcription factor GFH1; 80.29
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A Back     alignment and structure
Probab=100.00  E-value=3.7e-66  Score=530.74  Aligned_cols=321  Identities=21%  Similarity=0.364  Sum_probs=296.9

Q ss_pred             CccEEEEEeCCCceEEEEEEEchhhHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHH
Q 013922           88 ADIEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPH  167 (434)
Q Consensus        88 ~~m~V~~e~~~~~~~~l~V~v~~~ev~~~~~kal~~~~k~akIPGFRkGKvP~~iI~~~yG~~~i~~e~~~~li~~~~~~  167 (434)
                      ..|+|+++++++++++|+|+||++++++++++++++++++++||||||||||++||+++||. +|+.++++++++.+|.+
T Consensus         2 ~~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~ipGFRkGKvP~~~i~k~yG~-~v~~ea~~~~~~~~~~~   80 (392)
T 1t11_A            2 SHMQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGK-AVRQDVLGEVMQRHFIE   80 (392)
T ss_dssp             -CCEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCCCTTSCSSCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHhH-HHHHHHHHHHHHHHHHH
Confidence            35999999999999999999999999999999999999999999999999999999999995 89999999999999999


Q ss_pred             HHHhhhcccCCcccccccccchhhhccCCCCceEEEEEEeeecceecCCCCCcceeEEEEe----cchhhHHHHHHHHHH
Q 013922          168 AMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVE----IDNDTAAQQAAEEEL  243 (434)
Q Consensus       168 ai~e~~~~~l~~~~~i~~~~~~~~~~~~~~~~f~f~v~~ev~Pev~l~~~~~yk~i~v~v~----~dedv~~~~~~e~~L  243 (434)
                      |+++.+++|++.| .+.  .    ..+.++++|+|+++|+|+|+|+|+   +|++++|+++    ++++|++      .|
T Consensus        81 ai~e~~l~~~~~P-~i~--~----~~~~~~~~~~f~~~~ev~Pev~l~---~y~~l~v~~~~~~Vtde~Vd~------~l  144 (392)
T 1t11_A           81 AIVKEKINPAGAP-TFA--P----VEIGEGKDLVFTATFEVYPEVELK---GLENIAVEKPAAEVTDADVAE------ML  144 (392)
T ss_dssp             HHHHTTCCBSSCC-EEE--E----EECCTTSCEEEEEEEEBCCCCCCT---TCTTCEEESSCC---CTHHHH------HH
T ss_pred             HHHHcCCCcCCCC-Ccc--c----cccCCCCCEEEEEEecCCCceecC---CCCceEEEeCCCCcCHHHHHH------HH
Confidence            9999999999875 221  1    246678899999999999999997   8999999975    4667776      46


Q ss_pred             HHHHhhcCccccccCCCCCcCcEEEEEEEEEeeccCCCCCcccCCCcccCEEEEecCCCCCCccHHHHhcCCCCCceEEE
Q 013922          244 RRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSF  323 (434)
Q Consensus       244 ~~~~~~~a~~~~v~dr~~q~GD~V~vd~~~~~~~~d~~~G~~i~~~~~~~~~l~lg~~~~~~p~fe~~LiG~k~Ge~~~~  323 (434)
                      .++++++++|.++ +|+++.||+|+|||.++      .+|+.|+++...++.|.+| .|.++|||+++|+||++||+++|
T Consensus       145 ~~l~~~~a~~~~~-~~~~~~gD~V~i~y~g~------~dG~~fd~~~~~~~~~~lG-~g~~ipgfee~L~Gmk~Ge~~~v  216 (392)
T 1t11_A          145 ETLRKQQATWKEV-DEAAENGKRVSIDFVGS------IDGVEFEGGKAENFPLEMG-AGRMIPGFEDGIVGKTKGMEFVI  216 (392)
T ss_dssp             HHHHHHHCEEEEC-SCCCCTTCEEEEEEEEE------SSSSCCTTCEEEEEEEETT-SCCBSTTSGGGTTTCCSSCCCCE
T ss_pred             HHHHHhcCeeeec-CCCCCCCCEEEEEEEEE------ECCEEccCCCccceEEEec-CCCcchhHHHHhCCCCCCCEEEE
Confidence            6677778888875 89999999999999998      5799999988899999999 57899999999999999999999


Q ss_pred             EEcCCCCCCCCCCCCceeEEEEEEEEeecCCCCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013922          324 RLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQ  403 (434)
Q Consensus       324 ~i~fPed~~~~~laGk~v~f~V~Ik~Ik~~~lPELdDefak~l~~~~~Tleelr~~Ike~l~~~~~~~~~~~~~~~ll~~  403 (434)
                      +++||++|+.+.++|+++.|+|+|++|+++++||||||||+.++++++|+++||+.||++|+++++.++++.++++++++
T Consensus       217 ~v~fp~dy~~~~laGk~~~F~V~v~~i~~~~lpeldDEfak~~~~~~~tleelk~~ir~~l~~~~~~~~~~~~~~~v~~~  296 (392)
T 1t11_A          217 DVTFPEDYHAENLKGKAAKFAIKVNKVEARELPELNDEFVARFGVAEGGVDALKAEVRKNMERELKQAIKARIKEQAIEG  296 (392)
T ss_dssp             EEECCTTCSCTTTSSCEEEECCCEEEEEEEECCCCSTGGGGGGSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTT
T ss_pred             EEeCccccccCCCCCCeEEEEEEEEEEEcCCCCCcCHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999885469999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHHHHHHhcc
Q 013922          404 LYKMVEIDIPQSLFEEQGRQLYGAQLLQMQ  433 (434)
Q Consensus       404 L~e~~~~dlPeslv~~e~~~~~~~~l~~lq  433 (434)
                      |++.++|+||++||+++++++++++..+|+
T Consensus       297 l~e~~~~~lP~~lv~~e~~~~~~~~~~~l~  326 (392)
T 1t11_A          297 LVKENEIQVPSALIDQEINVLRQQAAQRFG  326 (392)
T ss_dssp             BCSCCCEEECHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999876
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5 Back     alignment and structure
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A Back     alignment and structure
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A* Back     alignment and structure
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7 Back     alignment and structure
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A Back     alignment and structure
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1 Back     alignment and structure
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Back     alignment and structure
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Back     alignment and structure
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Back     alignment and structure
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Back     alignment and structure
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Back     alignment and structure
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Back     alignment and structure
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Back     alignment and structure
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Back     alignment and structure
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Back     alignment and structure
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Back     alignment and structure
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A Back     alignment and structure
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Back     alignment and structure
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A* Back     alignment and structure
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Back     alignment and structure
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Back     alignment and structure
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Back     alignment and structure
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Back     alignment and structure
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Back     alignment and structure
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Back     alignment and structure
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Back     alignment and structure
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Back     alignment and structure
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Back     alignment and structure
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Back     alignment and structure
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Back     alignment and structure
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Back     alignment and structure
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Back     alignment and structure
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A* Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Back     alignment and structure
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0 Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Back     alignment and structure
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae} Back     alignment and structure
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 434
d1t11a2129 d.241.2.1 (A:1-129) Trigger factor ribosome-bindin 3e-15
d1t11a3113 d.26.1.1 (A:135-247) Trigger factor PPIase domain 3e-14
d1l1pa_106 d.26.1.1 (A:) Trigger factor PPIase domain {Escher 2e-13
d1p9ya_117 d.241.2.1 (A:) Trigger factor ribosome-binding dom 5e-13
d1hxva_85 d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl 2e-06
d1t11a1129 a.223.1.1 (A:248-376) Trigger factor, C-terminal d 0.002
d1w26a1 185 a.223.1.1 (A:248-432) Trigger factor, C-terminal d 0.003
>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain {Vibrio cholerae [TaxId: 666]} Length = 129 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Vibrio cholerae [TaxId: 666]

 Score = 69.6 bits (170), Expect = 3e-15
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 11/135 (8%)

Query: 91  EVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQ 150
           +VT         RL++ VP A  +D+    L  + K  +  GFR GK+P  ++    G+ 
Sbjct: 2   QVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGKA 61

Query: 151 NVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAP 210
            V++  +  +++R    A+                +  E +        L +    +V P
Sbjct: 62  -VRQDVLGEVMQRHFIEAIVKEKINPAGAPTFAPVEIGEGK-------DLVFTATFEVYP 113

Query: 211 EVKWNPGNGYKNLKI 225
           EV+     G +N+ +
Sbjct: 114 EVEL---KGLENIAV 125
>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]} Length = 113 Back     information, alignment and structure
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]} Length = 106 Back     information, alignment and structure
>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]} Length = 117 Back     information, alignment and structure
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85 Back     information, alignment and structure
>d1t11a1 a.223.1.1 (A:248-376) Trigger factor, C-terminal domain {Vibrio cholerae [TaxId: 666]} Length = 129 Back     information, alignment and structure
>d1w26a1 a.223.1.1 (A:248-432) Trigger factor, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 185 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query434
d1t11a2129 Trigger factor ribosome-binding domain {Vibrio cho 99.96
d1p9ya_117 Trigger factor ribosome-binding domain {Escherichi 99.96
d1t11a3113 Trigger factor PPIase domain {Vibrio cholerae [Tax 99.91
d1l1pa_106 Trigger factor PPIase domain {Escherichia coli [Ta 99.9
d1hxva_85 Trigger factor PPIase domain {Mycoplasma genitaliu 99.78
d1w26a1 185 Trigger factor, C-terminal domain {Escherichia col 99.26
d1t11a1129 Trigger factor, C-terminal domain {Vibrio cholerae 99.22
d1ix5a_151 Archaeal FKBP {Archaeon Methanococcus thermolithot 98.95
d1pbka_116 FKBP25 {Human (Homo sapiens) [TaxId: 9606]} 98.59
d2ppna1107 FK-506 binding protein (FKBP12), an immunophilin { 98.53
d1q1ca1120 FKBP52, N-terminal domains {Human (Homo sapiens) [ 98.53
d1yata_113 Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc 98.49
d1kt1a2111 FKBP51, N-terminal domains {Monkey (Saimiri bolivi 98.49
d1r9ha_118 FKB-6, N-terminal domain {Caenorhabditis elegans [ 98.38
d1jvwa_160 Macrophage infectivity potentiator protein (MIP) { 98.22
d1fd9a_204 Macrophage infectivity potentiator protein (MIP) { 98.18
d1kt1a3115 FKBP51, N-terminal domains {Monkey (Saimiri bolivi 98.16
d1q6ha_210 Peptidyl-prolyl cis-trans isomerase FkpA {Escheric 98.05
d1u79a_125 FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 98.04
d1q1ca2117 FKBP52, N-terminal domains {Human (Homo sapiens) [ 97.89
>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.96  E-value=4.9e-29  Score=215.80  Aligned_cols=128  Identities=21%  Similarity=0.367  Sum_probs=118.2

Q ss_pred             cEEEEEeCCCceEEEEEEEchhhHHHHHHHHHHHHhhhCCCCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHHHH
Q 013922           90 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAM  169 (434)
Q Consensus        90 m~V~~e~~~~~~~~l~V~v~~~ev~~~~~kal~~~~k~akIPGFRkGKvP~~iI~~~yG~~~i~~e~~~~li~~~~~~ai  169 (434)
                      |++++++++++.++|+|+||+++|++++++++++++++++||||||||||+++|+++||. ++..+++++++++++.+++
T Consensus         1 M~~~~~~~~~~~~~l~v~v~~~e~~~~~~~~~~~~~k~~~ipGFRkGKvP~~ii~k~~~~-~i~~e~~~~~i~~~~~~~l   79 (129)
T d1t11a2           1 MQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGK-AVRQDVLGEVMQRHFIEAI   79 (129)
T ss_dssp             CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCCCTTSCSSCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEcCCcEEEEEEEECHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHhhh-hHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999996 8999999999999999999


Q ss_pred             HhhhcccCCcccccccccchhhhccCCCCceEEEEEEeeecceecCCCCCcceeEEEEe
Q 013922          170 TSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVE  228 (434)
Q Consensus       170 ~e~~~~~l~~~~~i~~~~~~~~~~~~~~~~f~f~v~~ev~Pev~l~~~~~yk~i~v~v~  228 (434)
                      ++.++.+++.| .+    ..  ..+.++++|+|++.|+++|+|+++   +|++++|+.+
T Consensus        80 ~e~~i~~~~~p-~i----~~--~~~~~~~~~~~~~~~ev~Pei~l~---~y~~l~v~kP  128 (129)
T d1t11a2          80 VKEKINPAGAP-TF----AP--VEIGEGKDLVFTATFEVYPEVELK---GLENIAVEKP  128 (129)
T ss_dssp             HHTTCCBSSCC-EE----EE--EECCTTSCEEEEEEEEBCCCCCCT---TCTTCEEESS
T ss_pred             HhcccCcccCC-Cc----Cc--ccccCCCcEEEEEEEEEcCccccC---CcCccEeecC
Confidence            99999998865 22    21  246778899999999999999997   8999998864
>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Back     information, alignment and structure
>d1w26a1 a.223.1.1 (A:248-432) Trigger factor, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t11a1 a.223.1.1 (A:248-376) Trigger factor, C-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Back     information, alignment and structure
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure