Citrus Sinensis ID: 013948
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 433 | 2.2.26 [Sep-21-2011] | |||||||
| Q80W98 | 304 | Small glutamine-rich tetr | yes | no | 0.295 | 0.421 | 0.465 | 5e-26 | |
| Q8VD33 | 304 | Small glutamine-rich tetr | yes | no | 0.286 | 0.407 | 0.472 | 6e-26 | |
| Q96EQ0 | 304 | Small glutamine-rich tetr | yes | no | 0.286 | 0.407 | 0.472 | 1e-25 | |
| O70593 | 314 | Small glutamine-rich tetr | no | no | 0.286 | 0.394 | 0.472 | 1e-25 | |
| O43765 | 313 | Small glutamine-rich tetr | no | no | 0.286 | 0.396 | 0.48 | 2e-25 | |
| Q8BJU0 | 315 | Small glutamine-rich tetr | no | no | 0.286 | 0.393 | 0.472 | 2e-25 | |
| Q32LM2 | 313 | Small glutamine-rich tetr | no | no | 0.286 | 0.396 | 0.464 | 3e-25 | |
| Q54VG4 | 334 | Small glutamine-rich tetr | yes | no | 0.558 | 0.724 | 0.277 | 6e-21 | |
| Q84K11 | 556 | Serine/threonine-protein | N/A | no | 0.383 | 0.298 | 0.354 | 1e-20 | |
| Q12118 | 346 | Small glutamine-rich tetr | yes | no | 0.279 | 0.349 | 0.427 | 2e-20 |
| >sp|Q80W98|SGTB_RAT Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus GN=Sgtb PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 86/129 (66%), Gaps = 1/129 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
A+ K +GN M+ + Y+ A++ Y+ AI L NNAVYY NRAAA +++ Y +A++DC K
Sbjct: 85 ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEK 144
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I ID YSKAY R+GLA A + +A+ ++KAL LDP N++ K N+++AEQKLRE
Sbjct: 145 AIAIDSKYSKAYGRMGLALTAMNKFEEAV-TSYQKALDLDPENDSYKSNLKIAEQKLREV 203
Query: 298 RQRTGWDQT 306
TG T
Sbjct: 204 SSPTGTGLT 212
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Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity. Rattus norvegicus (taxid: 10116) |
| >sp|Q8VD33|SGTB_MOUSE Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus GN=Sgtb PE=2 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
A+ K +GN M+ + Y+ A++ Y+ AI L NNAVYY NRAAA +++ Y +A++DC K
Sbjct: 85 ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEK 144
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I ID YSKAY R+GLA A + +A+ ++KAL LDP N++ K N+++AEQKLRE
Sbjct: 145 AIAIDSKYSKAYGRMGLALTAMNKFEEAV-TSYQKALDLDPENDSYKSNLKIAEQKLREV 203
Query: 298 RQRTG 302
TG
Sbjct: 204 SSPTG 208
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Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity. Mus musculus (taxid: 10090) |
| >sp|Q96EQ0|SGTB_HUMAN Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
A+ K +GN M+ + Y+ A++ Y+ AI L NNAVYY NRAAA +++ Y +A++DC K
Sbjct: 85 ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEK 144
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I ID YSKAY R+GLA A + +A+ ++KAL LDP N++ K N+++AEQKLRE
Sbjct: 145 AIAIDSKYSKAYGRMGLALTALNKFEEAV-TSYQKALDLDPENDSYKSNLKIAEQKLREV 203
Query: 298 RQRTG 302
TG
Sbjct: 204 SSPTG 208
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Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity. Homo sapiens (taxid: 9606) |
| >sp|O70593|SGTA_RAT Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Rattus norvegicus GN=Sgta PE=1 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 83/125 (66%), Gaps = 1/125 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE K +GN M+ + + A+ LY AI L NAVY+ NRAAAY+++ Y AV+DC +
Sbjct: 91 AERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCER 150
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I IDP YSKAY R+GLA + + +A+ +KKAL+LDP+N+ K N+++AE KLRE
Sbjct: 151 AIGIDPGYSKAYGRMGLALSSLNKHAEAVAY-YKKALELDPDNDTYKSNLKIAELKLREA 209
Query: 298 RQRTG 302
TG
Sbjct: 210 PSPTG 214
|
Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity. Rattus norvegicus (taxid: 10116) |
| >sp|O43765|SGTA_HUMAN Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Homo sapiens GN=SGTA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 1/125 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE K +GN M+ + + A+ Y AI L NAVY+ NRAAAY+++ YA AV+DC +
Sbjct: 91 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 150
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I IDP YSKAY R+GLA + + +A+ +KKAL+LDP+NE K N+++AE KLRE
Sbjct: 151 AICIDPAYSKAYGRMGLALSSLNKHVEAVAY-YKKALELDPDNETYKSNLKIAELKLREA 209
Query: 298 RQRTG 302
TG
Sbjct: 210 PSPTG 214
|
Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity. Homo sapiens (taxid: 9606) |
| >sp|Q8BJU0|SGTA_MOUSE Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Mus musculus GN=Sgta PE=1 SV=2 | Back alignment and function description |
|---|
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 83/125 (66%), Gaps = 1/125 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE K +GN M+ + + A+ LY AI L NAVY+ NRAAAY+++ Y AV+DC +
Sbjct: 92 AERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCER 151
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I IDP YSKAY R+GLA + + +A+ +KKAL+LDP+N+ K N+++AE KLRE
Sbjct: 152 AIGIDPGYSKAYGRMGLALSSLNKHAEAVAY-YKKALELDPDNDTYKSNLKIAELKLREA 210
Query: 298 RQRTG 302
TG
Sbjct: 211 PSPTG 215
|
Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity. Mus musculus (taxid: 10090) |
| >sp|Q32LM2|SGTA_BOVIN Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Bos taurus GN=SGTA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 84/125 (67%), Gaps = 1/125 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE K +GN M+ + + A+ Y AI L NAVY+ NRAAAY+++ YA AV+DC +
Sbjct: 91 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 150
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I IDP+YSKAY R+GLA + + +A+ ++KAL+LDP+NE K N+++AE +LRE
Sbjct: 151 AICIDPSYSKAYGRMGLALSSLNKHTEAVAY-YRKALELDPDNETYKSNLKVAELRLREA 209
Query: 298 RQRTG 302
TG
Sbjct: 210 PSPTG 214
|
Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity. Bos taurus (taxid: 9913) |
| >sp|Q54VG4|SGT_DICDI Small glutamine-rich tetratricopeptide repeat-containing protein OS=Dictyostelium discoideum GN=sgt PE=1 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 132/274 (48%), Gaps = 32/274 (11%)
Query: 14 RRIVRSFLHFLDSVEPAPGVDLEGLEVARECLTEVFKLDSPSADGQRKP--DSLIDIFNS 71
+++ S L+FL + E L+VA EC+ +VF +D + Q + D F
Sbjct: 6 QKLAVSILNFLKVSMKEDAENAESLQVAVECIRDVFGVDENDSTLQVSAPLSEIFDKFIG 65
Query: 72 QQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPDSTGVSKDELFGQFFAAL 131
+ ++ + S + ++ +SE + E F QF L
Sbjct: 66 ENNTNTTTTTTTTTTKLSKEELLNQTYSEIPYELLES---------------FKQFITIL 110
Query: 132 EKFHYFRTMPDGNDDPSQ-VDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ 190
E+ F N+D + V KA++ ME K +AE K +GN +
Sbjct: 111 EQKGAF-----ANEDSCETVIKATKQKF-----MESKAGEV---KAIAEKLKNEGNAKLN 157
Query: 191 SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYS 250
++ +A+ Y+ AI NA+Y++NRAA Y+ + + +++ DCL++I +PNY KAY+
Sbjct: 158 EGKHQEALSCYNKAILYDNTNAIYFANRAATYSALQNFEKSIEDCLEAIKRNPNYGKAYT 217
Query: 251 RLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284
R+G AY + G +++A+E + KA++L+PNNE K
Sbjct: 218 RMGSAYTSLGKFSEAME-AYNKAIELEPNNETFK 250
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May act as a co-chaperone and regulate the ATPase activity of heat shock proteins. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q84K11|PPP5_SOLLC Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 96/172 (55%), Gaps = 6/172 (3%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE K N + +YS AI+LY+ AI L G NAVYY+NRA A+T++ +Y A++D +
Sbjct: 14 AEELKQLANEAFKGHKYSQAIDLYTQAIELNGENAVYYANRAFAHTKLEEYGSAIQDGTR 73
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I+IDP YSK Y R G AY A G + DA+ K F++ +L PN+ + ++ E+ +
Sbjct: 74 AIEIDPRYSKGYYRRGAAYLAMGKFKDAL-KDFQQVKKLCPNDPDATKKLKECEKAV--- 129
Query: 298 RQRTGWDQTTSSSHYSQESNQSTGGFRSHGT-PPSFTMPFNTNALPTDIASM 348
+ +++ S + S + +RS G+ P S +P T A+ A M
Sbjct: 130 -MKLKFEEAISVPESQRRSVADSIDYRSVGSGPGSSYVPTKTTAVSAAAALM 180
|
Isoform 2 dephosphorylates phosphorylated phytochromes, with a preference toward Pfr forms, and enhances phytochrome-mediated photoresponses (By similarity). Can use para-nitrophenylphosphate (pNPP) and phosphorylated casein as substrate at pH 7.5 and 5.0. Solanum lycopersicum (taxid: 4081) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 6 |
| >sp|Q12118|SGT2_YEAST Small glutamine-rich tetratricopeptide repeat-containing protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 81/124 (65%), Gaps = 3/124 (2%)
Query: 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRD 234
K AE K QGN+ M ++ Y AI Y+ AI + NA+YY+NRAAA++ + +Y +AV+D
Sbjct: 99 KAKAEDLKMQGNKAMANKDYELAINKYTEAIKVLPTNAIYYANRAAAHSSLKEYDQAVKD 158
Query: 235 CLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN--EAVKENIRMAEQ 292
+I IDP+Y + YSRLG A YAQG +A+E +KK L ++ +N EA+K + A++
Sbjct: 159 AESAISIDPSYFRGYSRLGFAKYAQGKPEEALE-AYKKVLDIEGDNATEAMKRDYESAKK 217
Query: 293 KLRE 296
K+ +
Sbjct: 218 KVEQ 221
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Co-chaperone that binds to the molecular chaperone Hsp70 (SSA1 and SSA2). Regulates Hsp70 ATPase activity (By similarity). Required for recovery from heat shock. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 433 | ||||||
| 255545490 | 402 | heat shock protein 70 (HSP70)-interactin | 0.900 | 0.970 | 0.605 | 1e-143 | |
| 356549136 | 438 | PREDICTED: small glutamine-rich tetratri | 0.967 | 0.956 | 0.595 | 1e-130 | |
| 357438615 | 482 | Small glutamine-rich tetratricopeptide r | 0.953 | 0.856 | 0.585 | 1e-127 | |
| 388499960 | 420 | unknown [Medicago truncatula] | 0.956 | 0.985 | 0.587 | 1e-127 | |
| 356549138 | 415 | PREDICTED: small glutamine-rich tetratri | 0.939 | 0.980 | 0.583 | 1e-126 | |
| 356554597 | 423 | PREDICTED: small glutamine-rich tetratri | 0.930 | 0.952 | 0.574 | 1e-125 | |
| 42566332 | 426 | tetratricopeptide repeat domain-containi | 0.949 | 0.964 | 0.555 | 1e-124 | |
| 79325019 | 427 | tetratricopeptide repeat domain-containi | 0.951 | 0.964 | 0.543 | 1e-121 | |
| 28416691 | 427 | At4g08320 [Arabidopsis thaliana] gi|1107 | 0.951 | 0.964 | 0.545 | 1e-120 | |
| 449449747 | 427 | PREDICTED: small glutamine-rich tetratri | 0.930 | 0.943 | 0.517 | 1e-113 |
| >gi|255545490|ref|XP_002513805.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis] gi|223546891|gb|EEF48388.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 266/439 (60%), Positives = 318/439 (72%), Gaps = 49/439 (11%)
Query: 1 MANSRIQTDSPLSRRIVRSFLHFLDSVEPAPGVDLEGLEVARECLTEVFKLDSPSADGQR 60
MAN ++TDSPLSRRIVR+F FLDSV+PAPGVDLEGL+VARECL EVFK+DS +AD
Sbjct: 1 MAN--LKTDSPLSRRIVRAFFDFLDSVQPAPGVDLEGLDVARECLNEVFKIDSTAADDSI 58
Query: 61 KPDSLIDIFNSQQASDALGIKSD--------NAPSSSSAQNMDAKFSEASKSMGEDWTEE 112
KP LID+F S + I SD N+P+ S AQN+
Sbjct: 59 KPGLLIDLFRSLDGNADQKINSDLSRGPTPVNSPNLSHAQNV------------------ 100
Query: 113 PDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAY 172
G SKDELFGQF AALEK H+F+T PDGNDDP Q+DKA+R+FHDA+N MEK+G ++
Sbjct: 101 ----GESKDELFGQFCAALEKIHFFKTTPDGNDDPVQLDKATRLFHDALNAMEKAGCQSF 156
Query: 173 NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAV 232
N+ +LAE K QGN+ MQS+ Y DAIELYS AI+LC NNAVYY NRAAAYTQIH+Y EA+
Sbjct: 157 NRNSLAETLKSQGNQAMQSKTYPDAIELYSCAISLCENNAVYYCNRAAAYTQIHKYTEAI 216
Query: 233 RDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQ 292
RDCLKSI+IDP+YSKAYSRLGLAYYAQGNY DAI+KGF+KAL+LDP+NE+VKENIR+AEQ
Sbjct: 217 RDCLKSIEIDPHYSKAYSRLGLAYYAQGNYRDAIDKGFRKALELDPHNESVKENIRVAEQ 276
Query: 293 KLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFT-MPFNTNALPTDIASMLMN 351
KL+EE+Q TG DQ S QE N FT MPFN N +P D A+M N
Sbjct: 277 KLKEEQQWTGRDQMNFS---GQEPNN------------EFTSMPFNMNGIPVDFANMFRN 321
Query: 352 MASNMPQAQPSQSRQGEDSNVSGSDEPGIRIGGNINLNFGENMPEDITGALRSMMEMFSG 411
MA+ P Q RQGED NV+GS++P +R+GGNINLN GEN+PE++ GALRSMM MFSG
Sbjct: 322 MAAQFTGEHP-QERQGEDRNVNGSEDPEVRLGGNINLNLGENVPEELRGALRSMMGMFSG 380
Query: 412 PSPQGNPNPHDTDTTNGRS 430
+ GNP P DT+TT+GRS
Sbjct: 381 AATHGNPQPQDTNTTDGRS 399
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549136|ref|XP_003542953.1| PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 267/448 (59%), Positives = 319/448 (71%), Gaps = 29/448 (6%)
Query: 1 MANSRIQTDSPLSRRIVRSFLHFLDSVEPAPGVDLEGLEVARECLTEVFKLD-SPSADGQ 59
MA++ I TDSPLSRRIVR+FLHFL+SVEP PGVD EG+EVARECL E FKL+ SP A
Sbjct: 1 MAHNYIATDSPLSRRIVRAFLHFLNSVEPGPGVDAEGIEVARECLAEAFKLNQSPVAGDD 60
Query: 60 RKPDSLIDIFNSQQASDALG-IKSDNAP--------SSSSAQN--MDAKFSEASKSMGED 108
K DSLIDIF S +A KSD P SS S +N SEASKS ED
Sbjct: 61 VKSDSLIDIFKSLEAKKQCEPSKSDVGPQPDSVDASSSFSGENPARGKNHSEASKSTDED 120
Query: 109 WTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSG 168
T+ P + VSKDEL GQFFAALEK YF + DG+DDP Q++KAS +F++A E+E+SG
Sbjct: 121 STQGPHAF-VSKDELCGQFFAALEKNCYFWSNTDGSDDPVQLEKASCLFNEACMELERSG 179
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
H ++ KNLAE K GN+ MQS++YSDAIELY+ AIA+ +AVYY NRAAAYTQI++Y
Sbjct: 180 CHQFSLKNLAESLKTLGNKAMQSKKYSDAIELYNCAIAVHEKSAVYYCNRAAAYTQINKY 239
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288
EA++DCL+SI+IDPNYSKAYSRLGL YYAQGNY DAI KGF+KALQLDPNNE+VKENIR
Sbjct: 240 TEAIQDCLRSIEIDPNYSKAYSRLGLVYYAQGNYRDAIHKGFRKALQLDPNNESVKENIR 299
Query: 289 MAEQKLREERQRTGWDQTTSSSHYSQESNQST-GGFRSHGTPPSF-TMPFNTNALPTDIA 346
+AE+KL EE+ R +Q + SS + NQS GG RSH PP F +M FN P DIA
Sbjct: 300 VAERKLLEEQHRAYQNQNSRSSQ--EFPNQSAQGGSRSHSVPPPFSSMSFN----PRDIA 353
Query: 347 SMLMNM---ASNMPQAQPSQSRQGEDSNVSGSDEPGIRIGGNINLNFGENMPEDITGALR 403
SM MN+ + PQ S + EDSN SG+ EP IRIGGNI++N E+MPEDITGAL+
Sbjct: 354 SMFMNITNPTNAQPQGSHSHQERQEDSNGSGTSEPEIRIGGNISVNM-EDMPEDITGALQ 412
Query: 404 SMMEMFSGPSPQGNPNPHDTDTTNGRSA 431
SMMEM SG +P G P D TNGR+A
Sbjct: 413 SMMEMLSGAAPPGQPQ----DQTNGRTA 436
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357438615|ref|XP_003589583.1| Small glutamine-rich tetratricopeptide repeat-containing protein [Medicago truncatula] gi|355478631|gb|AES59834.1| Small glutamine-rich tetratricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 254/434 (58%), Positives = 311/434 (71%), Gaps = 21/434 (4%)
Query: 1 MANSRIQTDSPLSRRIVRSFLHFLDSVEPAPGVDLEGLEVARECLTEVFKLDSPSADGQR 60
M+++RI TDSPLS RIVRSFLHFL+ VEP+PGVD EG+EVARECL E FK+++ SA
Sbjct: 1 MSHNRITTDSPLSHRIVRSFLHFLNQVEPSPGVDAEGIEVARECLVEAFKINN-SASVTG 59
Query: 61 KPDSLIDIFNSQQASDAL---GIKSDNAPSSSSAQNM-DAK-FSEASKSMGEDWTEEPDS 115
+PDSLIDIF S A+ + S A SS SAQN DAK + SK M EDWT+ P +
Sbjct: 60 EPDSLIDIFKSFDANKQCERSRLDSMKASSSVSAQNAADAKTHPDESKPMDEDWTQGPHT 119
Query: 116 TGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQK 175
+ VSKDEL GQFFA LEK HYFRT DG DD Q++KASR+F D EME+SG +N K
Sbjct: 120 SAVSKDELCGQFFAVLEKKHYFRTNIDGGDDIVQLEKASRLFDDGFTEMERSGCQQFNLK 179
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
NLAE K GN+ MQS+QY DAIELY+ AIA+ +AVYY NRAAAYTQI++Y EA++D
Sbjct: 180 NLAESLKTLGNKAMQSKQYFDAIELYNCAIAIYEKSAVYYCNRAAAYTQINRYTEAIQDS 239
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLR 295
L+SI+IDPNYSKAYSRLGLAYYAQGNY DAI+KGFKKALQLDPNNE+VKENIR+AE KL
Sbjct: 240 LRSIEIDPNYSKAYSRLGLAYYAQGNYRDAIDKGFKKALQLDPNNESVKENIRVAEHKLM 299
Query: 296 EERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF-TMPFNTNALPTDIASMLMNMAS 354
EER R +Q + S + N G RSH P SF +MPFN P+++ASM M A+
Sbjct: 300 EERHRADHNQNSRSQEF---QNHYARGSRSHAAPASFGSMPFN----PSNLASMFM-AAA 351
Query: 355 NMPQAQPSQSRQGEDSNVSGSDEPGIRIGGNINLNFGENMPEDITGALRSMMEMFSGPSP 414
N Q SQ Q ED+N SG++EP IR GGN+N+N + +P+++ GA +S+M MFSG +P
Sbjct: 352 NGGQGSHSQEGQ-EDANSSGANEPEIRFGGNVNVN-QDQIPQELRGAFQSVMHMFSGNAP 409
Query: 415 QGNPNPHDTDTTNG 428
G P+ D NG
Sbjct: 410 PGQPH----DQMNG 419
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388499960|gb|AFK38046.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 256/436 (58%), Positives = 311/436 (71%), Gaps = 22/436 (5%)
Query: 1 MANSRIQTDSPLSRRIVRSFLHFLDSVEPAPGVDLEGLEVARECLTEVFKLDSPSADGQR 60
M+++RI TDSPLS RIVRSFLHFL+ VEP+PGVD EG+EVARECL E FK+++ SA
Sbjct: 1 MSHNRITTDSPLSHRIVRSFLHFLNQVEPSPGVDAEGIEVARECLVEAFKINN-SASVTG 59
Query: 61 KPDSLIDIFNSQQASDAL---GIKSDNAPSSSSAQNM-DAK-FSEASKSMGEDWTEEPDS 115
+PDSLIDIF S A+ + S A SS SAQN DAK + SK M EDWT+ P
Sbjct: 60 EPDSLIDIFKSFDANKQCERSRLDSMKASSSVSAQNAADAKTHPDESKPMDEDWTQGP-H 118
Query: 116 TGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQK 175
T VSKDEL GQFFA LEK HYFRT DG DD Q++KASR+F D EME+SG +N K
Sbjct: 119 TSVSKDELCGQFFAVLEKKHYFRTNIDGGDDIVQLEKASRLFDDGFTEMERSGCQQFNLK 178
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
NLAE K GN+ MQS+QY DAIELY+ AIA+ AVYY NRAAAYTQI++Y EA++D
Sbjct: 179 NLAESLKTLGNKAMQSKQYFDAIELYNCAIAIYEKGAVYYCNRAAAYTQINRYTEAIQDS 238
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLR 295
L+SI+IDPNYSKAYSRLGLAYYAQGNY DAI+KGFKKALQLDPNNE+VKENIR+AE KL
Sbjct: 239 LRSIEIDPNYSKAYSRLGLAYYAQGNYRDAIDKGFKKALQLDPNNESVKENIRVAEHKLM 298
Query: 296 EERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF-TMPFNTNALPTDIASMLMNMAS 354
EER R +Q + S + N G RSH P SF +MPFN P+++ASM M A+
Sbjct: 299 EERHRADHNQNSRSQEF---QNHYARGSRSHAAPASFGSMPFN----PSNLASMFM-AAA 350
Query: 355 NMPQAQPSQSRQGEDSNVSGSDEPGIRIGGNINLNFGENMPEDITGALRSMMEMFSGPSP 414
N Q SQ Q ED+N SG++EP IR GGN+N+N + +P+++ GA +S+M MFSG +P
Sbjct: 351 NGGQGSHSQEGQ-EDANSSGANEPEIRFGGNVNVN-QDQIPQELRGAFQSVMHMFSGNAP 408
Query: 415 QGNPNPHDTDTTNGRS 430
G P+ D NG+S
Sbjct: 409 PGQPH----DQMNGKS 420
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549138|ref|XP_003542954.1| PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 255/437 (58%), Positives = 307/437 (70%), Gaps = 30/437 (6%)
Query: 1 MANSRIQTDSPLSRRIVRSFLHFLDSVEPAPGVDLEGLEVARECLTEVFKLD-SPSADGQ 59
MA++ I TDSPLSRRIVR+FLHFL+SVEP PGVD EG+EVARECL E FKL+ SP A
Sbjct: 1 MAHNYIATDSPLSRRIVRAFLHFLNSVEPGPGVDAEGIEVARECLAEAFKLNQSPVAGDD 60
Query: 60 RKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPDSTGVS 119
K DSLIDIF S +A K PS S +S GE+ +S
Sbjct: 61 VKSDSLIDIFKSLEA------KKQCEPSKSDVGPQPDSVDASSSFSGEN-------PALS 107
Query: 120 KDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAE 179
KDEL GQFFAALEK YF + DG+DDP Q++KAS +F++A E+E+SG H ++ KNLAE
Sbjct: 108 KDELCGQFFAALEKNCYFWSNTDGSDDPVQLEKASCLFNEACMELERSGCHQFSLKNLAE 167
Query: 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSI 239
K GN+ MQS++YSDAIELY+ AIA+ +AVYY NRAAAYTQI++Y EA++DCL+SI
Sbjct: 168 SLKTLGNKAMQSKKYSDAIELYNCAIAVHEKSAVYYCNRAAAYTQINKYTEAIQDCLRSI 227
Query: 240 DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQ 299
+IDPNYSKAYSRLGL YYAQGNY DAI KGF+KALQLDPNNE+VKENIR+AE+KL EE+
Sbjct: 228 EIDPNYSKAYSRLGLVYYAQGNYRDAIHKGFRKALQLDPNNESVKENIRVAERKLLEEQH 287
Query: 300 RTGWDQTTSSSHYSQESNQST-GGFRSHGTPPSF-TMPFNTNALPTDIASMLMNM---AS 354
R +Q + SS + NQS GG RSH PP F +M FN P DIASM MN+ +
Sbjct: 288 RAYQNQNSRSSQ--EFPNQSAQGGSRSHSVPPPFSSMSFN----PRDIASMFMNITNPTN 341
Query: 355 NMPQAQPSQSRQGEDSNVSGSDEPGIRIGGNINLNFGENMPEDITGALRSMMEMFSGPSP 414
PQ S + EDSN SG+ EP IRIGGNI++N E+MPEDITGAL+SMMEM SG +P
Sbjct: 342 AQPQGSHSHQERQEDSNGSGTSEPEIRIGGNISVNM-EDMPEDITGALQSMMEMLSGAAP 400
Query: 415 QGNPNPHDTDTTNGRSA 431
G P D TNGR+A
Sbjct: 401 PGQPQ----DQTNGRTA 413
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554597|ref|XP_003545631.1| PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 258/449 (57%), Positives = 309/449 (68%), Gaps = 46/449 (10%)
Query: 1 MANSRIQTDSPLSRRIVRSFLHFLDSVEPAPGVDLEGLEVARECLTEVFKLDS-PSADGQ 59
MA++ I TDSPLSRRIVR+FL+FL+SVEP PGVD EG+EVARECL E FKL+S P A
Sbjct: 1 MAHNHIATDSPLSRRIVRAFLYFLNSVEPGPGVDAEGIEVARECLAEAFKLNSSPVAGDD 60
Query: 60 RKPDSLIDIFNSQQASDALGI-KSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPDSTGV 118
K DSLIDIF S +A+ KSD P SA D + + G+
Sbjct: 61 VKSDSLIDIFKSLEANKQCETSKSDVGPLPDSA----------------DASSRLKNLGI 104
Query: 119 SKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLA 178
SKDEL GQFFAALEK HYF + DG+DDP Q++KAS +F +A EME+ H ++ KNLA
Sbjct: 105 SKDELCGQFFAALEKNHYFWSNTDGSDDPGQLEKASCLFDEACMEMERCDCHQFSLKNLA 164
Query: 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKS 238
E K GN+ MQS++YSDAIELY+ AIA+ +AVYY NRAAAYTQI++Y EA++DCL+S
Sbjct: 165 ESLKTLGNKAMQSKKYSDAIELYNCAIAVHEKSAVYYCNRAAAYTQINKYTEAIQDCLRS 224
Query: 239 IDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298
I+IDPNY+KAYSRLGL YYAQGNY DAI KGF+KALQLDPNNE+VKENIR+AE+KL EE+
Sbjct: 225 IEIDPNYTKAYSRLGLVYYAQGNYRDAIHKGFRKALQLDPNNESVKENIRVAERKLLEEQ 284
Query: 299 QRTGWDQ------------TTSSSHYSQESNQSTGGFRSHGTPPSF-TMPFNTNALPTDI 345
R +Q T SS + +S Q GG RSHG PP F +MPFN P DI
Sbjct: 285 HRAYPNQLNIFFLFHSLKNTRSSQEFPNQSAQ--GGSRSHGEPPPFSSMPFN----PRDI 338
Query: 346 ASMLMNM--ASN-MPQAQPSQSRQGEDSNVSGSDEPGIRIGGNINLNFGENMPEDITGAL 402
ASM MN A+N Q SQ RQ EDSN SG+ EP IRIGGNI++N E+MPEDITGA
Sbjct: 339 ASMFMNFTNATNAQQQGSHSQERQ-EDSNGSGASEPEIRIGGNISVNM-EDMPEDITGAF 396
Query: 403 RSMMEMFSGPSPQGNPNPHDTDTTNGRSA 431
+SMMEM SG +P G P D NGR+A
Sbjct: 397 QSMMEMLSGAAPPGQPQ----DQMNGRAA 421
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42566332|ref|NP_192572.2| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|332657225|gb|AEE82625.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/436 (55%), Positives = 301/436 (69%), Gaps = 25/436 (5%)
Query: 4 SRIQTDSPLSRRIVRSFLHFLDSVEPAPGVDLEGLEVARECLTEVFKLDSPSADGQR--- 60
+++ TDSPL R+IVRSFL+FLDSVE APGVD EGLEVARECL E FKL+S S+
Sbjct: 2 AKLTTDSPLCRKIVRSFLNFLDSVEVAPGVDEEGLEVARECLREAFKLNSDSSRDDDDDS 61
Query: 61 -KPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPDSTGVS 119
KP SL+++F S ++ + P +A D S + S+ D +EP TG S
Sbjct: 62 FKPISLVNLFTSLDNNETI---PPPPPPPVAATTQDPSSSGSHVSV--DTCKEPSFTGTS 116
Query: 120 KDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAE 179
+DELFGQ F ALEK YFR PDG+DDP+Q++KA+RIFHD +NEMEKSG ++ +LAE
Sbjct: 117 RDELFGQLFGALEKVRYFRNTPDGDDDPAQLEKATRIFHDCVNEMEKSGCQTFDVNSLAE 176
Query: 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSI 239
KCQGN+ MQS Y +A+ELYSFAIAL NAV+Y NRAAAYTQI+ +EA++DCLKSI
Sbjct: 177 TLKCQGNKAMQSNLYLEAVELYSFAIALTDKNAVFYCNRAAAYTQINMCSEAIKDCLKSI 236
Query: 240 DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQ 299
+IDPNYSKAYSRLGLAYYAQG Y +AIEKGFKKAL LDP+NE+VKENIR+AEQK+REE+Q
Sbjct: 237 EIDPNYSKAYSRLGLAYYAQGKYAEAIEKGFKKALLLDPHNESVKENIRVAEQKIREEQQ 296
Query: 300 RTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQA 359
R Q T S+ Y+QE G G P F+MP N D+ SM MNMA N
Sbjct: 297 RQRRSQNT-STFYTQEPEMGGG----QGIPSQFSMPVN-----PDLMSMFMNMAGNTFPG 346
Query: 360 QPSQSRQ---GEDSNVSGSDEPGIRIGGNINLNFG--ENMPEDITGALRSMMEMFSGP-S 413
S++ + G D +G+DEP I +GGNIN++ G E MPED++GALRSMM+MF G
Sbjct: 347 NHSRNNEGGAGGDGTRNGADEPEIHVGGNINIDLGGTEQMPEDLSGALRSMMQMFGGSMG 406
Query: 414 PQGNPNPHDTDTTNGR 429
GN NP D++ GR
Sbjct: 407 GTGNNNPQDSNGAQGR 422
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79325019|ref|NP_001031594.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|332657226|gb|AEE82626.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/436 (54%), Positives = 300/436 (68%), Gaps = 24/436 (5%)
Query: 4 SRIQTDSPLSRRIVRSFLHFLDSVEPAPGVDLEGLEVARECLTEVFKLDSPSADGQR--- 60
+++ TDSPL R+IVRSFL+FLDSVE APGVD EGLEVARECL E FKL+S S+
Sbjct: 2 AKLTTDSPLCRKIVRSFLNFLDSVEVAPGVDEEGLEVARECLREAFKLNSDSSRDDDDDS 61
Query: 61 -KPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPDSTGVS 119
KP SL+++F S ++ + ++++ S + + D +EP TG S
Sbjct: 62 FKPISLVNLFTSLDNNETIPPPPPPPVAATTQDP-----SSSGSHVSVDTCKEPSFTGTS 116
Query: 120 KDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAE 179
+DELFGQ F ALEK YFR PDG+DDP+Q++KA+RIFHD +NEMEKSG ++ +LAE
Sbjct: 117 RDELFGQLFGALEKVRYFRNTPDGDDDPAQLEKATRIFHDCVNEMEKSGCQTFDVNSLAE 176
Query: 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSI 239
KCQGN+ MQS Y +A+ELYSFAIAL NAV+Y NRAAAYTQI+ +EA++DCLKSI
Sbjct: 177 TLKCQGNKAMQSNLYLEAVELYSFAIALTDKNAVFYCNRAAAYTQINMCSEAIKDCLKSI 236
Query: 240 DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQ 299
+IDPNYSKAYSRLGLAYYAQG Y +AIEKGFKKAL LDP+NE+VKENIR+AEQK+REE+Q
Sbjct: 237 EIDPNYSKAYSRLGLAYYAQGKYAEAIEKGFKKALLLDPHNESVKENIRVAEQKIREEQQ 296
Query: 300 RTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQA 359
R Q +S+ Y+QE G G P F+MP N D+ SM MNMA N
Sbjct: 297 RQRRSQQNTSTFYTQEPEMGGG----QGIPSQFSMPVN-----PDLMSMFMNMAGNTFPG 347
Query: 360 QPSQSRQ---GEDSNVSGSDEPGIRIGGNINLNFG--ENMPEDITGALRSMMEMFSGP-S 413
S++ + G D +G+DEP I +GGNIN++ G E MPED++GALRSMM+MF G
Sbjct: 348 NHSRNNEGGAGGDGTRNGADEPEIHVGGNINIDLGGTEQMPEDLSGALRSMMQMFGGSMG 407
Query: 414 PQGNPNPHDTDTTNGR 429
GN NP D++ GR
Sbjct: 408 GTGNNNPQDSNGAQGR 423
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|28416691|gb|AAO42876.1| At4g08320 [Arabidopsis thaliana] gi|110735799|dbj|BAE99876.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 238/436 (54%), Positives = 302/436 (69%), Gaps = 24/436 (5%)
Query: 4 SRIQTDSPLSRRIVRSFLHFLDSVEPAPGVDLEGLEVARECLTEVFKLDSPSADGQR--- 60
+++ TDSPL R+IVRSFL+FLDSVE APGVD EGLEVARECL E FKL+S S+
Sbjct: 2 AKLTTDSPLCRKIVRSFLNFLDSVEVAPGVDEEGLEVARECLREAFKLNSDSSRDDDDDS 61
Query: 61 -KPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPDSTGVS 119
KP SL+++F S ++ + ++++ S + + D +EP TG S
Sbjct: 62 FKPISLVNLFTSLDNNETIPPPPPPPVAATTQDP-----SSSGSHVSVDTCKEPSFTGTS 116
Query: 120 KDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAE 179
+DELFGQ F ALEK YFR PDG+DDP+Q++KA+RIFHD +NEMEKSG ++ +LAE
Sbjct: 117 RDELFGQLFGALEKVRYFRNTPDGDDDPAQLEKATRIFHDCVNEMEKSGCQTFDVNSLAE 176
Query: 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSI 239
KCQGN+ MQS Y +A+ELYSFAIAL NAV+Y NRAAAYTQI+ +EA++DCLKSI
Sbjct: 177 TLKCQGNKAMQSNLYLEAVELYSFAIALTDKNAVFYCNRAAAYTQINMCSEAIKDCLKSI 236
Query: 240 DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQ 299
+IDPNYSKAYSRLGLAYYAQG Y +AIEKGFKKAL LDP+NE+VKENIR+AEQK+REE+Q
Sbjct: 237 EIDPNYSKAYSRLGLAYYAQGKYAEAIEKGFKKALLLDPHNESVKENIRVAEQKIREEQQ 296
Query: 300 RTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQA 359
R Q +S+ Y+QE GG + G P F+MP N D+ SM MNMA N
Sbjct: 297 RQRRSQQNTSTFYTQEP--EMGGVQ--GIPSQFSMPVN-----PDLMSMFMNMAGNTFPG 347
Query: 360 QPSQSRQ---GEDSNVSGSDEPGIRIGGNINLNFG--ENMPEDITGALRSMMEMFSGP-S 413
S++ + G D +G+DEP I +GGNIN++ G E MPED++GALRSMM+MF G
Sbjct: 348 NHSRNNEGGAGGDGTRNGADEPEIHVGGNINIDLGGTEQMPEDLSGALRSMMQMFGGSMG 407
Query: 414 PQGNPNPHDTDTTNGR 429
GN NP D++ GR
Sbjct: 408 GTGNNNPQDSNGAQGR 423
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449747|ref|XP_004142626.1| PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 226/437 (51%), Positives = 288/437 (65%), Gaps = 34/437 (7%)
Query: 1 MANSRIQTDSPLSRRIVRSFLHFLDSVEPAPGVDLEGLEVARECLTEVFKLDSPSADGQR 60
MAN ++TDSP++ RIVR+FL FL+SVEP PGVD+EGLEVA++CL +VF+++SP+AD
Sbjct: 1 MAN--LRTDSPVACRIVRAFLDFLNSVEPGPGVDVEGLEVAKQCLEQVFQVESPAADELT 58
Query: 61 KPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPDSTGVSK 120
DSL++IF S P S + + + S GV +
Sbjct: 59 DFDSLVEIFGS--------------PESFQRSRTSSFVDNGAVPLDHPLLSHYFSVGVFQ 104
Query: 121 DELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEI 180
DELFGQF ALEK HYFRT DG DDP Q+++A+R+FHDA+ EM++SG N KNLAE
Sbjct: 105 DELFGQFVLALEKLHYFRTTADGRDDPDQLERATRLFHDALGEMDRSGCAEINHKNLAES 164
Query: 181 FKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSID 240
K GNR M+S+ YSDAIELYS AIALC NNA+YY NRAAAYTQI +Y+EA RDCLKSI+
Sbjct: 165 LKSLGNRAMKSKLYSDAIELYSCAIALCENNAIYYCNRAAAYTQIQKYSEATRDCLKSIE 224
Query: 241 IDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQR 300
IDPNYSKAYSRLGLA Y QGNY DAI+KGF +ALQLDPNNEAV+ENIR+AEQKL+E +++
Sbjct: 225 IDPNYSKAYSRLGLALYDQGNYRDAIDKGFMRALQLDPNNEAVRENIRVAEQKLKEAQRQ 284
Query: 301 TGWDQTTS-----SSHYSQESNQSTGG--------FRSHGTPPSFTMPFNTNALPTDIAS 347
T +Q ++ S+ SQES TGG S PP F +P++ +
Sbjct: 285 TQHEQGSASRNQGSTSRSQESENQTGGGGGSRNDSSPSPPPPPPFPSMPFNVTIPSEFSD 344
Query: 348 MLMNMASNMP---QAQPSQSRQGEDSNVSGSDEPGIRIGGNINLNFGENMPEDITGALRS 404
M MNMASN Q S+ GE+ + +G EP GN + + G+ M +D+ GALRS
Sbjct: 345 MFMNMASNATNTFHGQHSEDSGGENQSRNGWGEP--NTDGNFSFSIGDGMTQDLNGALRS 402
Query: 405 MMEMFSGPSPQGNPNPH 421
MM+MF+G +P GNP H
Sbjct: 403 MMQMFTGSAPSGNPQDH 419
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 433 | ||||||
| TAIR|locus:2137440 | 427 | TPR8 "AT4G08320" [Arabidopsis | 0.951 | 0.964 | 0.548 | 1.2e-113 | |
| UNIPROTKB|H9L1A6 | 313 | SGTA "Uncharacterized protein" | 0.286 | 0.396 | 0.48 | 2.6e-32 | |
| MGI|MGI:2444615 | 304 | Sgtb "small glutamine-rich tet | 0.286 | 0.407 | 0.472 | 2.6e-32 | |
| RGD|727976 | 304 | Sgtb "small glutamine-rich tet | 0.286 | 0.407 | 0.472 | 2.6e-32 | |
| ZFIN|ZDB-GENE-040704-72 | 320 | sgta "small glutamine-rich tet | 0.284 | 0.384 | 0.475 | 3e-31 | |
| MGI|MGI:1098703 | 315 | Sgta "small glutamine-rich tet | 0.286 | 0.393 | 0.472 | 7.7e-31 | |
| UNIPROTKB|F1S8G6 | 313 | SGTA "Uncharacterized protein" | 0.286 | 0.396 | 0.464 | 1.3e-30 | |
| RGD|620815 | 314 | Sgta "small glutamine-rich tet | 0.286 | 0.394 | 0.472 | 1.3e-30 | |
| UNIPROTKB|O70593 | 314 | Sgta "Small glutamine-rich tet | 0.286 | 0.394 | 0.472 | 1.3e-30 | |
| UNIPROTKB|Q32LM2 | 313 | SGTA "Small glutamine-rich tet | 0.286 | 0.396 | 0.464 | 5.3e-30 |
| TAIR|locus:2137440 TPR8 "AT4G08320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1121 (399.7 bits), Expect = 1.2e-113, P = 1.2e-113
Identities = 239/436 (54%), Positives = 296/436 (67%)
Query: 4 SRIQTDSPLSRRIVRSFLHFLDSVEPAPGVDLEGLEVARECLTEVFKLDSPSA----DGQ 59
+++ TDSPL R+IVRSFL+FLDSVE APGVD EGLEVARECL E FKL+S S+ D
Sbjct: 2 AKLTTDSPLCRKIVRSFLNFLDSVEVAPGVDEEGLEVARECLREAFKLNSDSSRDDDDDS 61
Query: 60 RKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPDSTGVS 119
KP SL+++F S ++ + P +A D S + S+ D +EP TG S
Sbjct: 62 FKPISLVNLFTSLDNNETI---PPPPPPPVAATTQDPSSSGSHVSV--DTCKEPSFTGTS 116
Query: 120 KDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAE 179
+DELFGQ F ALEK YFR PDG+DDP+Q++KA+RIFHD +NEMEKSG ++ +LAE
Sbjct: 117 RDELFGQLFGALEKVRYFRNTPDGDDDPAQLEKATRIFHDCVNEMEKSGCQTFDVNSLAE 176
Query: 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSI 239
KCQGN+ MQS Y +A+ELYSFAIAL NAV+Y NRAAAYTQI+ +EA++DCLKSI
Sbjct: 177 TLKCQGNKAMQSNLYLEAVELYSFAIALTDKNAVFYCNRAAAYTQINMCSEAIKDCLKSI 236
Query: 240 DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQ 299
+IDPNYSKAYSRLGLAYYAQG Y +AIEKGFKKAL LDP+NE+VKENIR+AEQK+REE+Q
Sbjct: 237 EIDPNYSKAYSRLGLAYYAQGKYAEAIEKGFKKALLLDPHNESVKENIRVAEQKIREEQQ 296
Query: 300 RTGWDXXXXXXXXXXXXXXXXGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQA 359
R GG G P F+MP N P D+ SM MNMA N
Sbjct: 297 RQR--RSQQNTSTFYTQEPEMGG--GQGIPSQFSMPVN----P-DLMSMFMNMAGNTFPG 347
Query: 360 QPSQSRQGE---DSNVSGSDEPGIRIGGNINLNFG--ENMPEDITGALRSMMEMFSGP-S 413
S++ +G D +G+DEP I +GGNIN++ G E MPED++GALRSMM+MF G
Sbjct: 348 NHSRNNEGGAGGDGTRNGADEPEIHVGGNINIDLGGTEQMPEDLSGALRSMMQMFGGSMG 407
Query: 414 PQGNPNPHDTDTTNGR 429
GN NP D++ GR
Sbjct: 408 GTGNNNPQDSNGAQGR 423
|
|
| UNIPROTKB|H9L1A6 SGTA "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 308 (113.5 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 60/125 (48%), Positives = 87/125 (69%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE K +GN M+++ + A+ Y AI L +NAVY+ NRAAAY+++ YA AVRDC +
Sbjct: 90 AERLKTEGNEQMKAENFEAAVSFYGKAIELNPSNAVYFCNRAAAYSKLGNYAGAVRDCER 149
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I IDPNYSKAY R+GLA + + +A+ +KKAL+LDP+N+ K N+++AEQK++E
Sbjct: 150 AIGIDPNYSKAYGRMGLALSSLNKHTEAVVY-YKKALELDPDNDTYKSNLKIAEQKMKET 208
Query: 298 RQRTG 302
TG
Sbjct: 209 PSPTG 213
|
|
| MGI|MGI:2444615 Sgtb "small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 302 (111.4 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 59/125 (47%), Positives = 85/125 (68%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
A+ K +GN M+ + Y+ A++ Y+ AI L NNAVYY NRAAA +++ Y +A++DC K
Sbjct: 85 ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEK 144
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I ID YSKAY R+GLA A + +A+ ++KAL LDP N++ K N+++AEQKLRE
Sbjct: 145 AIAIDSKYSKAYGRMGLALTAMNKFEEAVTS-YQKALDLDPENDSYKSNLKIAEQKLREV 203
Query: 298 RQRTG 302
TG
Sbjct: 204 SSPTG 208
|
|
| RGD|727976 Sgtb "small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 302 (111.4 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 59/125 (47%), Positives = 85/125 (68%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
A+ K +GN M+ + Y+ A++ Y+ AI L NNAVYY NRAAA +++ Y +A++DC K
Sbjct: 85 ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEK 144
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I ID YSKAY R+GLA A + +A+ ++KAL LDP N++ K N+++AEQKLRE
Sbjct: 145 AIAIDSKYSKAYGRMGLALTAMNKFEEAVTS-YQKALDLDPENDSYKSNLKIAEQKLREV 203
Query: 298 RQRTG 302
TG
Sbjct: 204 SSPTG 208
|
|
| ZFIN|ZDB-GENE-040704-72 sgta "small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 291 (107.5 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 59/124 (47%), Positives = 81/124 (65%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE K +GN M+ + YS A++ Y+ AI L NAVYY NRAAA++++ Y EA+ DC +
Sbjct: 101 AEQLKNEGNNHMKEENYSSAVDCYTKAIELDQRNAVYYCNRAAAHSKLENYTEAMGDCER 160
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I IDP+YSKAY R+GLA + Y +AI F KAL LDP N+ K N+++ EQK +E
Sbjct: 161 AIAIDPSYSKAYGRMGLALTSMSKYPEAISY-FNKALVLDPENDTYKSNLKIVEQKQKEA 219
Query: 298 RQRT 301
T
Sbjct: 220 SSPT 223
|
|
| MGI|MGI:1098703 Sgta "small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 289 (106.8 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 59/125 (47%), Positives = 83/125 (66%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE K +GN M+ + + A+ LY AI L NAVY+ NRAAAY+++ Y AV+DC +
Sbjct: 92 AERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCER 151
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I IDP YSKAY R+GLA + + +A+ +KKAL+LDP+N+ K N+++AE KLRE
Sbjct: 152 AIGIDPGYSKAYGRMGLALSSLNKHAEAVAY-YKKALELDPDNDTYKSNLKIAELKLREA 210
Query: 298 RQRTG 302
TG
Sbjct: 211 PSPTG 215
|
|
| UNIPROTKB|F1S8G6 SGTA "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 58/125 (46%), Positives = 85/125 (68%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE K +GN M+ + + A+ Y AI L +NAVY+ NRAAAY+++ YA AV+DC +
Sbjct: 91 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPSNAVYFCNRAAAYSKLGNYAGAVQDCER 150
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I IDP+YSKAY R+GLA + + +A+ ++KAL+LDP+NE K N+++AE +LRE
Sbjct: 151 AICIDPSYSKAYGRMGLALSSLNKHTEAVAY-YRKALELDPDNETYKSNLKVAELRLREA 209
Query: 298 RQRTG 302
TG
Sbjct: 210 PSPTG 214
|
|
| RGD|620815 Sgta "small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 289 (106.8 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 59/125 (47%), Positives = 83/125 (66%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE K +GN M+ + + A+ LY AI L NAVY+ NRAAAY+++ Y AV+DC +
Sbjct: 91 AERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCER 150
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I IDP YSKAY R+GLA + + +A+ +KKAL+LDP+N+ K N+++AE KLRE
Sbjct: 151 AIGIDPGYSKAYGRMGLALSSLNKHAEAVAY-YKKALELDPDNDTYKSNLKIAELKLREA 209
Query: 298 RQRTG 302
TG
Sbjct: 210 PSPTG 214
|
|
| UNIPROTKB|O70593 Sgta "Small glutamine-rich tetratricopeptide repeat-containing protein alpha" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 289 (106.8 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 59/125 (47%), Positives = 83/125 (66%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE K +GN M+ + + A+ LY AI L NAVY+ NRAAAY+++ Y AV+DC +
Sbjct: 91 AERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCER 150
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I IDP YSKAY R+GLA + + +A+ +KKAL+LDP+N+ K N+++AE KLRE
Sbjct: 151 AIGIDPGYSKAYGRMGLALSSLNKHAEAVAY-YKKALELDPDNDTYKSNLKIAELKLREA 209
Query: 298 RQRTG 302
TG
Sbjct: 210 PSPTG 214
|
|
| UNIPROTKB|Q32LM2 SGTA "Small glutamine-rich tetratricopeptide repeat-containing protein alpha" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 287 (106.1 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 58/125 (46%), Positives = 84/125 (67%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE K +GN M+ + + A+ Y AI L NAVY+ NRAAAY+++ YA AV+DC +
Sbjct: 91 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 150
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I IDP+YSKAY R+GLA + + +A+ ++KAL+LDP+NE K N+++AE +LRE
Sbjct: 151 AICIDPSYSKAYGRMGLALSSLNKHTEAVAY-YRKALELDPDNETYKSNLKVAELRLREA 209
Query: 298 RQRTG 302
TG
Sbjct: 210 PSPTG 214
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 5.2.1.8 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 433 | |||
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-27 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-15 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-14 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 3e-14 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-12 | |
| PLN03088 | 356 | PLN03088, PLN03088, SGT1, suppressor of G2 allele | 4e-12 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 6e-11 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-10 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 8e-09 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 1e-08 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 1e-08 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 3e-08 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 4e-08 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 7e-08 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 7e-07 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 1e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-05 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 2e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 3e-05 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 3e-05 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 4e-05 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 5e-05 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 9e-05 | |
| TIGR02552 | 135 | TIGR02552, LcrH_SycD, type III secretion low calci | 9e-05 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 3e-04 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 3e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.001 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.001 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 0.002 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 0.002 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.003 | |
| smart01043 | 145 | smart01043, BTAD, Bacterial transcriptional activa | 0.004 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 5e-27
Identities = 44/101 (43%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKS 238
E GN + Y +A+E Y A+ L +NA Y N AAAY ++ +Y EA+ D K+
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 239 IDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279
+++DP+ +KAY LGLAYY G Y +A+E ++KAL+LDPN
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEA-YEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 4e-15
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274
N Y ++ Y EA+ K++++DP+ + AY L AYY G Y +A+E ++KAL
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALED-YEKAL 61
Query: 275 QLDPNNEAVKENIRMAEQKLRE 296
+LDP+N N+ +A KL +
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGK 83
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-14
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 210 NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG-NYNDAIEK 268
+NA N A ++ Y EA+ K++++DP+ ++AY L LAY G +Y +A+E
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 269 GFKKALQLDP 278
+KAL+LDP
Sbjct: 61 -LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 3e-14
Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 161 INEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAA 220
I+E + +K A K +GN+ +++ ++ AI+LYS AI C + VYYSNRAA
Sbjct: 110 IDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAI-ECKPDPVYYSNRAA 168
Query: 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+ + + + V D ++++DP+YSKA +R AY G Y DA+ + N
Sbjct: 169 CHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228
Query: 281 E----AVKENI-RMAEQKLRE 296
E AV+ + + AE K +E
Sbjct: 229 EQSAQAVERLLKKFAESKAKE 249
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-12
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH-QYAEAVRD 234
+ AE K GN + + Y +AIE Y A+ L +NA Y N A AY ++ Y EA+ D
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 235 CLKSIDIDP 243
K++++DP
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 197 AIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256
A++LY+ AI L NNA Y++RA A ++ + EAV D K+I++DP+ +KAY R G A
Sbjct: 21 AVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80
Query: 257 YAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
Y A + +K L P + + I+ ++K+ EE
Sbjct: 81 MKLEEYQTA-KAALEKGASLAPGDSRFTKLIKECDEKIAEE 120
|
Length = 356 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.9 bits (151), Expect = 6e-11
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
++A ++ A+ + A L + + G Y +A+EL A+ L
Sbjct: 145 DYEEALELYEKALELDPELNELAEALLALGALLEALGR-------YEEALELLEKALKLN 197
Query: 209 GNN-AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267
++ A N Y ++ +Y EA+ K++++DP+ ++A L L G Y +A+E
Sbjct: 198 PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALE 257
Query: 268 KGFKKALQLDPN 279
+KAL+LDP+
Sbjct: 258 A-LEKALELDPD 268
|
Length = 291 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.8 bits (148), Expect = 1e-10
Identities = 44/215 (20%), Positives = 79/215 (36%), Gaps = 13/215 (6%)
Query: 92 QNMDAKFSEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDP---- 147
EA + + G+ ALE + +
Sbjct: 40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALL 99
Query: 148 --SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAI 205
+ +A + +A+ +EK A A + + + Y +A+ELY A+
Sbjct: 100 NLGLLLEALGKYEEALELLEK--ALALDPDPDLAEALLALGALYELGDYEEALELYEKAL 157
Query: 206 ALCG---NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS-KAYSRLGLAYYAQGN 261
L A A + +Y EA+ K++ ++P+ +A LGL Y G
Sbjct: 158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217
Query: 262 YNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296
Y +A+E ++KAL+LDP+N N+ + +L
Sbjct: 218 YEEALEY-YEKALELDPDNAEALYNLALLLLELGR 251
|
Length = 291 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 8e-09
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+KA LG AY G Y++A+E ++KAL+L+PNN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEY-YEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 1e-08
Identities = 17/35 (48%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
++A LG AY G+Y++A+E ++KAL+LDPNN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEY-YEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-08
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-------DPNYSKAYSRLGLAYYAQGNYND 264
A +N A ++ Y EA+ K++++ P ++A + L Y A G+Y++
Sbjct: 5 AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64
Query: 265 AIEKGFKKALQLDPN 279
A+E +KAL L
Sbjct: 65 ALE-YLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 3e-08
Identities = 19/34 (55%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 247 KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+A LGLAYY G+Y +A+E ++KAL+LDPNN
Sbjct: 2 EALYNLGLAYYKLGDYEEALEA-YEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (128), Expect = 4e-08
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 170 HAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC--GNNAVYYSNRAAAYTQIHQ 227
+LA + +++ + +A+EL A+ L N A N + +
Sbjct: 51 ELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGK 110
Query: 228 YAEAVRDCLKSIDIDPNYSKAYSRLGL-AYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286
Y EA+ K++ +DP+ A + L L A Y G+Y +A+E ++KAL+LDP + E
Sbjct: 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALEL-YEKALELDPELNELAEA 169
Query: 287 IRMAEQKLREERQ 299
+ L +
Sbjct: 170 LLALGALLEALGR 182
|
Length = 291 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 7e-08
Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 13/147 (8%)
Query: 165 EKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ 224
+ A AY + E+ QG +++ + +A+ + A L + ++ AA Q
Sbjct: 89 LQKSAIAYPK--DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ 146
Query: 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284
+ ++ EA R +++++ PN + LG++ +G+ DA E A + V+
Sbjct: 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDA-ETLLLPAYLSPAADSRVR 205
Query: 285 EN----------IRMAEQKLREERQRT 301
+N R AE +E
Sbjct: 206 QNLALVVGLQGDFREAEDIAVQELLSE 232
|
Length = 257 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.2 bits (118), Expect = 7e-07
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 5/134 (3%)
Query: 171 AYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN--NAVYYSNRAAAYTQIHQY 228
A + + + + ++A+EL A+ L N A A A ++ +
Sbjct: 16 AKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRL 75
Query: 229 AEAVRDCLKSID--IDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286
EA+ K+++ + PN ++A LGL A G Y +A+E +KAL LDP+ + +
Sbjct: 76 EEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL-LEKALALDPDPDLAEAL 134
Query: 287 IRMAEQKLREERQR 300
+ + + +
Sbjct: 135 LALGALYELGDYEE 148
|
Length = 291 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 219 AAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278
A Y + A + K+++ DP+ AY L L Y G + E F++AL L+P
Sbjct: 38 ALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE-LEKAEDSFRRALTLNP 96
Query: 279 NNEAVKEN 286
NN V N
Sbjct: 97 NNGDVLNN 104
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-05
Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 244 NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+ ++A LG A + G+Y++AIE ++KAL+LDP+N
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEA-YEKALELDPDN 36
|
Length = 69 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 16/152 (10%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
+ + A +I ++K A F+ +G+ ++ + Y AI+ Y A+
Sbjct: 684 RTESAKKIAKS----LQK------QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733
Query: 209 GN--NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAI 266
+ NA+ A AEAV+ + PN + + L Y AQ +Y+ AI
Sbjct: 734 PSSQNAIKL---HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAI 790
Query: 267 EKGFKKALQLDPNNEAVKENIRMAEQKLREER 298
K ++ ++ P+N V N+ +L++ R
Sbjct: 791 -KHYQTVVKKAPDNAVVLNNLAWLYLELKDPR 821
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 2e-05
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 235 CLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267
K++++DPN ++AY L L G Y++A++
Sbjct: 2 YEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
|
Length = 34 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-05
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 218 RAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD 277
A A + Y EA+ ++ P ++A LG A QG +A + AL D
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAAL-LRAALAAD 61
Query: 278 PNNE 281
P++
Sbjct: 62 PDDP 65
|
Length = 65 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 3e-05
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 218 RAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD 277
A Y Q YA+A ++ K+++ DP+Y A+ Y G ND ++ ++KAL L
Sbjct: 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE-NDLADESYRKALSLA 99
Query: 278 PNNEAVKEN 286
PNN V N
Sbjct: 100 PNNGDVLNN 108
|
Length = 250 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 4e-05
Identities = 48/218 (22%), Positives = 89/218 (40%), Gaps = 25/218 (11%)
Query: 65 LIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPDSTGVSKDELF 124
L+ F +A + L K +N PS + N F + G + DS + ++
Sbjct: 238 LLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE-----DSNELDEETGN 292
Query: 125 GQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAI--NEMEKSGAHAYNQKNLAEIFK 182
GQ L+ P+ D S ++A+R F A+ ++ + A A N L FK
Sbjct: 293 GQLQLGLKS-------PESKADES-YEEAARAFEKALDLGKLGEKEAIALN---LRGTFK 341
Query: 183 CQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDID 242
C + + +A+ S +I L Y RA+ ++ +A D K++ ++
Sbjct: 342 CLKGK------HLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN 395
Query: 243 PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
Y ++ +G + A K ++K++ LDP+
Sbjct: 396 SEDPDIYYHRAQLHFIKGEFAQA-GKDYQKSIDLDPDF 432
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY 245
A N AY ++ +Y EA+ K+++++PN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 9e-05
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY 245
A N AY ++ Y EA+ K++++DPN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 9e-05
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 18/136 (13%)
Query: 162 NEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAA 221
++E+ A AYN Q +Y +A++L+ A N+ Y+ AA
Sbjct: 15 EQLEQIYALAYNL--------------YQQGRYDEALKLFQLLAAYDPYNSRYWLGLAAC 60
Query: 222 YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281
+ +Y EA+ + +DP+ + Y A G A K A+++ N
Sbjct: 61 CQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESA-LKALDLAIEICGENP 119
Query: 282 ---AVKENIRMAEQKL 294
+KE + L
Sbjct: 120 EYSELKERAEAMLESL 135
|
Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 16/122 (13%)
Query: 189 MQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI------- 241
M + SDA+ Y A+ L G+N + Y + K+ +
Sbjct: 167 MALGRASDALLAYRNALRLAGDNP----EILLGLAEALYYQAGQQMTAKARALLRQALAL 222
Query: 242 DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN----EAVKENIRMAEQKLREE 297
DP +A S L A + QG+Y +A ++ L L P + ++ +I A + +
Sbjct: 223 DPANIRALSLLAFAAFEQGDYAEAAAA-WQMLLDLLPADDPRRSLIERSIARALAQRSAQ 281
Query: 298 RQ 299
Sbjct: 282 GP 283
|
Length = 287 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 3e-04
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 247 KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+AY LG Y G+Y +A E ++KAL+LDPNN
Sbjct: 2 RAYYLLGQIYLQLGDYEEAKE-YYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 157 FHDAINEME---KSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAV 213
+ DA ++ KS LA + Q + Q+ QY + I Y+ N+
Sbjct: 277 YEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA------PNS-- 328
Query: 214 YYSNRAAAYTQIH--QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFK 271
+ + R A Q+ + EA+ ++ +DP+ A S LG AY A G++ A E
Sbjct: 329 HQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEY-LA 387
Query: 272 KALQLDPNNEAVK 284
KA +LDP N A +
Sbjct: 388 KATELDPENAAAR 400
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 10/151 (6%)
Query: 154 SRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAV 213
F ++E+ G + + AE+ +G + Q A + Y A+A+ +
Sbjct: 103 QGKFQQVLDELP--GKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSL- 159
Query: 214 YYSNRAAAYTQIHQ--YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFK 271
Y+ A + + + EA + + DP A G + GN A+ ++
Sbjct: 160 -YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA-YR 217
Query: 272 KALQLDPNNEAV---KENIRMAEQKLREERQ 299
KA+ L PNN AV I + + E +
Sbjct: 218 KAIALRPNNIAVLLALATILIEAGEFEEAEK 248
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAV 283
+K +L L Y QG+ A E KAL+ DP++
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKEN-LDKALEHDPDDYLA 67
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 193 QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL 252
+ +AIE A+AL N+ + N A A + + EA+R + + DP + L
Sbjct: 355 KAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLL 414
Query: 253 GLAYYAQGN 261
AY GN
Sbjct: 415 AQAYAELGN 423
|
Length = 484 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 189 MQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKA 248
++ + +AI S A+ L ++ S AY + + +A K+ ++DP + A
Sbjct: 340 LRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAA 399
Query: 249 YSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279
++LG++ +QG+ ++AI + A QLDP
Sbjct: 400 RTQLGISKLSQGDPSEAIAD-LETAAQLDPE 429
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|198111 smart01043, BTAD, Bacterial transcriptional activator domain | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.004
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 218 RAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE------KGFK 271
A A + ++ EA+ + + +DP + + L A Y G +A+ +
Sbjct: 67 LAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLRRLLA 126
Query: 272 KALQLDPNNEAVKENIRMAEQKLR 295
L ++P E +R + +
Sbjct: 127 DELGVEPGPE-----LRALYEAIL 145
|
Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats. Length = 145 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 433 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.88 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.86 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.86 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.86 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.85 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.83 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.83 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.82 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.81 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.8 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.8 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.78 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.77 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.76 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.76 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.75 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.75 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.74 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.73 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.73 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.73 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.73 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.72 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.71 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.7 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.7 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.69 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.68 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.68 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.68 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.66 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.65 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.65 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.64 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.63 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.62 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.62 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.62 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.61 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.61 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.6 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.58 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.56 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.55 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.54 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.54 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.54 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.53 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.53 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.53 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.52 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.51 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.51 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.5 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.5 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.49 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.47 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.45 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.44 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.43 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.43 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.42 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.41 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.41 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.41 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.41 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.38 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.37 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.37 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.36 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.35 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.33 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.32 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.29 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.29 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 99.28 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.26 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.26 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.26 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.26 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.25 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.25 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.25 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.23 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.23 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.21 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.2 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.19 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 99.19 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.18 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.17 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.16 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.16 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.16 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.15 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.13 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.13 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.13 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.12 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.12 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.11 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.1 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.1 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.1 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.09 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.09 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.08 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.07 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.07 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.06 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.06 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.05 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.05 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.04 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.03 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.02 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.01 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.97 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.96 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.93 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.92 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.89 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.88 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.87 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.86 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.85 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.85 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.85 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.85 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.84 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.84 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.84 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.84 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.83 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.81 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.81 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.79 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.79 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.78 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.77 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.76 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 98.76 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.75 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.75 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.74 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.73 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.72 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.72 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.71 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.68 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.67 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.67 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.61 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.6 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.58 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.58 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.58 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.58 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.57 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.56 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.55 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.55 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.52 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.48 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.47 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.45 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.43 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.43 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.41 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.4 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.38 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.38 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.35 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.29 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.26 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.25 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.23 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.18 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.11 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 98.1 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.08 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.06 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.05 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.03 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.01 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.99 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.98 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.96 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.95 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.94 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.93 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.92 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.91 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.88 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.88 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.86 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.83 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.82 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.79 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.79 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.79 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.75 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.72 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.63 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.61 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.6 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.59 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.58 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.56 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.52 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.41 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.39 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.38 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.36 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.35 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.34 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.33 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.27 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.25 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.23 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.22 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.2 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.19 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.11 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.08 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.98 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.96 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.94 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 96.91 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.91 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.86 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.84 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 96.81 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.8 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 96.78 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.75 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.74 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.66 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.62 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 96.61 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.61 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.6 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.6 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 96.57 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.55 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.52 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.51 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.51 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.5 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.45 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.41 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.37 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.32 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.29 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 96.22 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.22 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.16 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.16 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.1 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.09 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 96.04 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.99 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.99 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 95.97 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.96 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 95.92 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.92 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 95.9 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.83 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.75 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 95.62 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.56 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 95.41 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 95.38 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 95.37 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.29 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 95.14 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 95.11 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 95.07 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 95.06 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 94.87 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.86 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 94.78 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 94.61 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 94.6 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 94.57 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 94.54 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.43 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 94.39 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.29 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 94.2 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 94.19 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.01 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 93.87 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.83 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 93.8 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.69 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 93.54 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.37 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 93.05 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 92.61 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.55 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 92.37 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 92.25 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.13 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 92.11 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.07 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 92.02 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 91.9 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.86 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 91.72 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 91.7 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 91.51 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.51 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.42 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 91.32 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 91.19 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 91.09 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 90.73 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 90.69 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 90.41 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.27 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 90.26 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 90.2 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 89.83 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.73 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 89.7 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.66 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.64 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.37 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.48 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 88.41 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 87.54 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 87.51 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 86.96 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 86.94 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 86.27 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 85.43 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 85.29 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 85.12 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.21 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 84.03 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 82.87 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 82.63 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 82.14 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 82.07 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 81.85 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 81.79 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 81.75 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 81.08 | |
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 80.07 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=271.73 Aligned_cols=264 Identities=17% Similarity=0.170 Sum_probs=197.0
Q ss_pred HHHHHHHHHhhh----hhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHH
Q 013948 124 FGQFFAALEKFH----YFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIE 199 (433)
Q Consensus 124 ~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 199 (433)
...+.++++..+ .|.+++......|+...|+..|++++.++|.. .++|+++|++|-..+.|+.|+.
T Consensus 204 ~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f----------~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 204 KACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF----------LDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc----------hHHHhhHHHHHHHHhcchHHHH
Confidence 334444444433 34455555556788888888888888887776 7888888888888888888888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC
Q 013948 200 LYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279 (433)
Q Consensus 200 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~ 279 (433)
+|.+|+.+.|+++.++.++|.+|+.+|..+-|+..|++++++.|+.+.++.+||.++...|+..+|.. +|.++|.+.|+
T Consensus 274 ~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~-cYnkaL~l~p~ 352 (966)
T KOG4626|consen 274 CYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVD-CYNKALRLCPN 352 (966)
T ss_pred HHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHH-HHHHHHHhCCc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888 88888888888
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcccccccCC-Cccch-----hhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHH
Q 013948 280 NEAVKENIRMAEQKLREERQRTGWDQTTSS-SHYSQ-----ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMN 351 (433)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~ 351 (433)
.++++.+||.++..+|..+.|...+.++.. .|... .+.+|.++|++++|+..| ++.++| ..+.++.+
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P-----~fAda~~N 427 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP-----TFADALSN 427 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc-----hHHHHHHh
Confidence 888888888888888888888887776653 22222 256777778888888888 888888 78888888
Q ss_pred HhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccccCCcHHHHHHHHHHH
Q 013948 352 MASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFGENMPEDITGALRSMM 406 (433)
Q Consensus 352 la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~~~~~~~~~~a~~~~~ 406 (433)
+| +.|..+|+...|+.+|.+|+..+|.+ .+++|+.... ++.+.+.+++.++.
T Consensus 428 mG-nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~--kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 428 MG-NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY--KDSGNIPEAIQSYR 480 (966)
T ss_pred cc-hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh--hccCCcHHHHHHHH
Confidence 88 78888888888888888888888877 6677766444 33333333444443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=260.08 Aligned_cols=305 Identities=17% Similarity=0.212 Sum_probs=232.9
Q ss_pred HHHHHHHHhhhhCCCCCC------------CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCC
Q 013948 16 IVRSFLHFLDSVEPAPGV------------DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSD 83 (433)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~------------~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 83 (433)
|+.+..-||++.+..+.+ .++.+-.||..|.||+++||++.++|...|+++.....++.+..+-....
T Consensus 200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred cchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 555566666666543333 45667777777777777777777777777777766666666655332222
Q ss_pred CCCCCCcccCCCccchhhhcccCcccccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHH
Q 013948 84 NAPSSSSAQNMDAKFSEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINE 163 (433)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 163 (433)
+ .+|.+..+ +.+.+..+.+.|+++-|+..|+++|..
T Consensus 280 ~---------lrpn~A~a-----------------------------------~gNla~iYyeqG~ldlAI~~Ykral~~ 315 (966)
T KOG4626|consen 280 N---------LRPNHAVA-----------------------------------HGNLACIYYEQGLLDLAIDTYKRALEL 315 (966)
T ss_pred h---------cCCcchhh-----------------------------------ccceEEEEeccccHHHHHHHHHHHHhc
Confidence 2 33333322 223333344578888888888888888
Q ss_pred HhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 013948 164 MEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 164 ~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 243 (433)
.|.. ..++.++|+.+-..|+..+|..+|.+++.++|+.+++.++||.++.++|.+++|...|.++++..|
T Consensus 316 ~P~F----------~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p 385 (966)
T KOG4626|consen 316 QPNF----------PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP 385 (966)
T ss_pred CCCc----------hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh
Confidence 7765 788888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCC
Q 013948 244 NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGF 323 (433)
Q Consensus 244 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 323 (433)
..+.++.+||.+|.++|++++|+. +|+.++.+.|...+++.++|.+|..+|+...|..++..
T Consensus 386 ~~aaa~nNLa~i~kqqgnl~~Ai~-~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~r----------------- 447 (966)
T KOG4626|consen 386 EFAAAHNNLASIYKQQGNLDDAIM-CYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTR----------------- 447 (966)
T ss_pred hhhhhhhhHHHHHHhcccHHHHHH-HHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHH-----------------
Confidence 888888888888888888888888 88888888888888888888888888888877766542
Q ss_pred CCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-cccccccccc---c-----cCC
Q 013948 324 RSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNF---G-----ENM 394 (433)
Q Consensus 324 ~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l---~-----~~~ 394 (433)
|+.++| ..++++.++| .+|.+.|+..+|+..|+.++.++|++ .+..|++..+ + ++.
T Consensus 448 ---------AI~~nP-----t~AeAhsNLa-si~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 448 ---------AIQINP-----TFAEAHSNLA-SIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred ---------HHhcCc-----HHHHHHhhHH-HHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHH
Confidence 788999 9999999999 99999999999999999999999999 8888888777 2 233
Q ss_pred cHHHHHHHHHHHh
Q 013948 395 PEDITGALRSMME 407 (433)
Q Consensus 395 ~~~~~~a~~~~~~ 407 (433)
..++.+.++.+.+
T Consensus 513 ~~kl~sivrdql~ 525 (966)
T KOG4626|consen 513 MKKLVSIVRDQLE 525 (966)
T ss_pred HHHHHHHHHHHHh
Confidence 4566667777763
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-25 Score=229.65 Aligned_cols=225 Identities=14% Similarity=0.099 Sum_probs=178.1
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
+++++|+..|++++...+. .+..+.++..+|.+++..|++++|+..|++++.++|++...|+.+|.++...|+
T Consensus 308 ~~y~~A~~~~~~al~~~~~-------~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~ 380 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKL-------GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGD 380 (615)
T ss_pred hhHHHHHHHHHHHHhcCCC-------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC
Confidence 4688899999998876421 133477888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
+++|+..|+++++++|+++.+++.+|.+++..|++++|+. +|+++++++|++..++..+|.++..+|++++|...+..+
T Consensus 381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGK-DYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999888887776
Q ss_pred CC-Cccch-----hhhhhhcCCCCCCCCCcc--cccCCCCCCCc-cHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 308 SS-SHYSQ-----ESNQSTGGFRSHGTPPSF--TMPFNTNALPT-DIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 308 ~~-~~~~~-----~~~~~~~~~~~~~A~~~~--al~~~p~~~~~-~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
.. .|... .+..+...|++++|+..| ++.++|...+. .....+.+.+..++...|++++|+..++++++++|
T Consensus 460 l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 460 KKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP 539 (615)
T ss_pred HHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 53 22222 256677778999999888 88888821110 01112233331344456888999999999888888
Q ss_pred Cc
Q 013948 379 GI 380 (433)
Q Consensus 379 ~~ 380 (433)
++
T Consensus 540 ~~ 541 (615)
T TIGR00990 540 EC 541 (615)
T ss_pred Cc
Confidence 88
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=222.68 Aligned_cols=217 Identities=13% Similarity=0.074 Sum_probs=198.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++.++|.. ..+|+.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|
T Consensus 344 ~g~~~eA~~~~~kal~l~P~~----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPRV----------TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCCc----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 589999999999999998887 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+.+|++++.++|++..+++.+|.++..+|++++|+. .|+++++..|+++.++..+|.++..+|++++|...+..
T Consensus 414 ~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~-~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMA-TFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999998877
Q ss_pred cCC-Cccchh------------hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHh
Q 013948 307 TSS-SHYSQE------------SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSN 371 (433)
Q Consensus 307 ~~~-~~~~~~------------~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~ 371 (433)
+.. .+.... ...+...|++++|+..+ ++.++| +...++..+| .++..+|++++|+..|+
T Consensus 493 Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-----~~~~a~~~la-~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 493 AIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-----ECDIAVATMA-QLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-----CcHHHHHHHH-HHHHHccCHHHHHHHHH
Confidence 653 222111 11234469999999999 899999 9999999999 99999999999999999
Q ss_pred hhcCCCCCc
Q 013948 372 VSGSDEPGI 380 (433)
Q Consensus 372 ~al~l~P~~ 380 (433)
+++++.+..
T Consensus 567 ~A~~l~~~~ 575 (615)
T TIGR00990 567 RAAELARTE 575 (615)
T ss_pred HHHHHhccH
Confidence 999998875
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-23 Score=194.87 Aligned_cols=250 Identities=19% Similarity=0.144 Sum_probs=201.6
Q ss_pred hHHHHHHHHHHHHHHHhhcc---ccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 149 QVDKASRIFHDAINEMEKSG---AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.|.+|...+++......... .........+.++...|..++-.|++-.|...|+++|.++|.+...|..+|.+|...
T Consensus 294 ~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~ 373 (606)
T KOG0547|consen 294 GYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADE 373 (606)
T ss_pred hHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhh
Confidence 46666666665554332211 001112456888999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
.+.++-...|.+|..++|+++.+|+.+|++++-+++|++|+. .|++++.++|++.-++..++.+..+.++.++....+.
T Consensus 374 ~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a-DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fe 452 (606)
T KOG0547|consen 374 NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA-DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFE 452 (606)
T ss_pred hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH-HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999988877
Q ss_pred ccCCC-ccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCcc------HHHHHHHHhhcccccCCChhhHHHHHh
Q 013948 306 TTSSS-HYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTD------IASMLMNMASNMPQAQPSQSRQGEDSN 371 (433)
Q Consensus 306 ~~~~~-~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~------~~~a~~~la~~~~~~~g~~~~A~~~~~ 371 (433)
.+... |...+ +.+...+++|++|++.| ++.+.| . .+..+.+.|..+++..+++..|+...+
T Consensus 453 e~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~-----~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~ 527 (606)
T KOG0547|consen 453 EAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP-----REHLIIVNAAPLVHKALLVLQWKEDINQAENLLR 527 (606)
T ss_pred HHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc-----ccccccccchhhhhhhHhhhchhhhHHHHHHHHH
Confidence 77643 33333 56778889999999999 999999 6 666777777556778899999999999
Q ss_pred hhcCCCCCc-ccccccccccccCCcHHHHHHHHHHH
Q 013948 372 VSGSDEPGI-RIGGNINLNFGENMPEDITGALRSMM 406 (433)
Q Consensus 372 ~al~l~P~~-~~~~~~~~~l~~~~~~~~~~a~~~~~ 406 (433)
+|+++||.. .+.-.+. .+ ..+.+++.+|+.-+.
T Consensus 528 KA~e~Dpkce~A~~tla-q~-~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 528 KAIELDPKCEQAYETLA-QF-ELQRGKIDEAIELFE 561 (606)
T ss_pred HHHccCchHHHHHHHHH-HH-HHHHhhHHHHHHHHH
Confidence 999999998 3332222 12 234444444444443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-23 Score=226.74 Aligned_cols=298 Identities=12% Similarity=0.079 Sum_probs=223.3
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
..+++++|+.+|+++++++|++++++...+.++.....++++......... ..|.+.. ..
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~---------~~p~~~~-----------~~ 340 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALA---------LDPHSSN-----------RD 340 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCCCccc-----------hh
Confidence 567899999999999999999997666655555555555555442111110 1111110 00
Q ss_pred CCCCCChhHHHH--HHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc
Q 013948 114 DSTGVSKDELFG--QFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS 191 (433)
Q Consensus 114 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~ 191 (433)
.| ..++. .+...+.. +......|++++|+..|+++++.+|.+ ..+++.+|.++...
T Consensus 341 ~~-----~~ll~~~~~~~~~~~-------g~~~~~~g~~~eA~~~~~~Al~~~P~~----------~~a~~~Lg~~~~~~ 398 (1157)
T PRK11447 341 KW-----ESLLKVNRYWLLIQQ-------GDAALKANNLAQAERLYQQARQVDNTD----------SYAVLGLGDVAMAR 398 (1157)
T ss_pred HH-----HHHHHhhhHHHHHHH-------HHHHHHCCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHC
Confidence 00 00000 00000000 001113689999999999999999987 78999999999999
Q ss_pred cCHHHHHHHHHHHHHhcCCCHHHHHHHHHH------------------------------------------HHHhhcHH
Q 013948 192 QQYSDAIELYSFAIALCGNNAVYYSNRAAA------------------------------------------YTQIHQYA 229 (433)
Q Consensus 192 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~------------------------------------------~~~~~~~~ 229 (433)
|++++|+..|+++++++|++..++..++.+ +...|+++
T Consensus 399 g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~ 478 (1157)
T PRK11447 399 KDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWA 478 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHH
Confidence 999999999999999999998776655544 44679999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 013948 230 EAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSS 309 (433)
Q Consensus 230 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 309 (433)
+|+..|+++++++|+++.+++.+|.++...|++++|+. .++++++.+|+++.+++.++..+...++.++|...+..+..
T Consensus 479 eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~-~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~ 557 (1157)
T PRK11447 479 QAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA-LMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPR 557 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999 99999999999999888887776666666666554433211
Q ss_pred -----------------------------------------Cccc-----hhhhhhhcCCCCCCCCCcc--cccCCCCCC
Q 013948 310 -----------------------------------------SHYS-----QESNQSTGGFRSHGTPPSF--TMPFNTNAL 341 (433)
Q Consensus 310 -----------------------------------------~~~~-----~~~~~~~~~~~~~~A~~~~--al~~~p~~~ 341 (433)
.|.. ..+.++...|++++|+..| ++..+|
T Consensus 558 ~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P--- 634 (1157)
T PRK11447 558 AQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP--- 634 (1157)
T ss_pred hhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---
Confidence 0111 1245677779999999999 888999
Q ss_pred CccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 342 PTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 342 ~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+++.++..++ .++...|++++|++.++++++..|++
T Consensus 635 --~~~~a~~~la-~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 635 --GNADARLGLI-EVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred --CCHHHHHHHH-HHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 8999999999 89999999999999999999998887
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-22 Score=201.09 Aligned_cols=243 Identities=13% Similarity=-0.026 Sum_probs=197.8
Q ss_pred HHHHHHhhhhCCCCCCCchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCcc
Q 013948 18 RSFLHFLDSVEPAPGVDLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAK 97 (433)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (433)
.++..||++.......+.+.+++|+.+|++|+++||+++.++.. +...+........
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~---La~~~~~~~~~g~-------------------- 313 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCA---LAECYLSMAQMGI-------------------- 313 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHH---HHHHHHHHHHcCC--------------------
Confidence 44567788776677778999999999999999999999733211 1111111100000
Q ss_pred chhhhcccCcccccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhH
Q 013948 98 FSEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNL 177 (433)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 177 (433)
....+++++|+..++++++++|++
T Consensus 314 ----------------------------------------------~~~~~~~~~A~~~~~~Al~ldP~~---------- 337 (553)
T PRK12370 314 ----------------------------------------------FDKQNAMIKAKEHAIKATELDHNN---------- 337 (553)
T ss_pred ----------------------------------------------cccchHHHHHHHHHHHHHhcCCCC----------
Confidence 001478999999999999999998
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.+++.++.+++
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~ 417 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HcCCHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccC
Q 013948 258 AQGNYNDAIEKGFKKALQLD-PNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPF 336 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~ 336 (433)
..|++++|+. ++++++... |+++.++..+|.++..+|+.++|...+.+. +..
T Consensus 418 ~~g~~eeA~~-~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~--------------------------~~~ 470 (553)
T PRK12370 418 YHTGIDDAIR-LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI--------------------------STQ 470 (553)
T ss_pred hccCHHHHHH-HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh--------------------------hhc
Confidence 9999999999 999999875 788999999999999999999998876632 334
Q ss_pred CCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhc
Q 013948 337 NTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSG 374 (433)
Q Consensus 337 ~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al 374 (433)
.| +...++..++ ..+...|+ +|...+++.+
T Consensus 471 ~~-----~~~~~~~~l~-~~~~~~g~--~a~~~l~~ll 500 (553)
T PRK12370 471 EI-----TGLIAVNLLY-AEYCQNSE--RALPTIREFL 500 (553)
T ss_pred cc-----hhHHHHHHHH-HHHhccHH--HHHHHHHHHH
Confidence 56 7777778888 77777774 5555555543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-23 Score=199.90 Aligned_cols=206 Identities=16% Similarity=0.139 Sum_probs=155.5
Q ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHH
Q 013948 157 FHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCL 236 (433)
Q Consensus 157 ~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 236 (433)
.+..++.+|.. ++.|..+|+|+--+++++.|+++|++|+.++|+++.+|..+|.=+.....++.|..+|+
T Consensus 410 aq~Li~~~~~s----------PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 410 AQDLIDTDPNS----------PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred HHHHHhhCCCC----------cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHH
Confidence 44455555555 67777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccC-CCccchh
Q 013948 237 KSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTS-SSHYSQE 315 (433)
Q Consensus 237 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~ 315 (433)
+|+..+|++..+||.+|.+|.++++++.|.- +|++|++++|.+......+|.++.++|+.++|...+..+. ..+.+..
T Consensus 480 ~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~-~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 480 KALGVDPRHYNAWYGLGTVYLKQEKLEFAEF-HFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred hhhcCCchhhHHHHhhhhheeccchhhHHHH-HHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 7777777777777777777777777777777 7777777777777777777777777777777777766654 2333222
Q ss_pred -----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 316 -----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 316 -----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
+.++...+++++|+..+ .-++-| +...+++.+| .+|..+|+.+.|+..|.-|+.+||.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP-----~es~v~~llg-ki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVP-----QESSVFALLG-KIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCc-----chHHHHHHHH-HHHHHHccchHHHHhhHHHhcCCCc
Confidence 45555667777777777 666789 9999999999 9999999999999999999999997
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-22 Score=208.75 Aligned_cols=286 Identities=10% Similarity=0.013 Sum_probs=156.8
Q ss_pred CCchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccC
Q 013948 33 VDLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEE 112 (433)
Q Consensus 33 ~~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (433)
...+++++|+..|+++++++|++++++...+.++......+.+......... ..|.+.....
T Consensus 87 l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~---------l~P~~~~a~~--------- 148 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL---------AFSGNSQIFA--------- 148 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCCCcHHHHH---------
Confidence 3578899999999999999999997765555555554545444432111110 1222221111
Q ss_pred CCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc
Q 013948 113 PDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ 192 (433)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~ 192 (433)
.....+.. .|++++|+..+++++...|.+ ..++..++ .+...|
T Consensus 149 -------------~la~~l~~-------------~g~~~eA~~~~~~~~~~~P~~----------~~a~~~~~-~l~~~g 191 (656)
T PRK15174 149 -------------LHLRTLVL-------------MDKELQAISLARTQAQEVPPR----------GDMIATCL-SFLNKS 191 (656)
T ss_pred -------------HHHHHHHH-------------CCChHHHHHHHHHHHHhCCCC----------HHHHHHHH-HHHHcC
Confidence 11111111 355555555555555554443 22332222 244455
Q ss_pred CHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH----HHH
Q 013948 193 QYSDAIELYSFAIALCGN-NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYND----AIE 267 (433)
Q Consensus 193 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~----A~~ 267 (433)
++++|+..+++++..+|. .......++.++...|++++|+..|+++++++|+++.+++.+|.++...|++++ |+.
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 555555555555544432 222233344455555555555555555555555555555555555555555543 455
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCC-Cccchh-----hhhhhcCCCCCCCCCcc--cccCCCC
Q 013948 268 KGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSS-SHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTN 339 (433)
Q Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~ 339 (433)
.|+++++++|++..++..+|.++...|++++|...++.+.. .|.... +..+...|++++|+..| ++..+|
T Consensus 272 -~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P- 349 (656)
T PRK15174 272 -HWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG- 349 (656)
T ss_pred -HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-
Confidence 55555555555555555555555555555555554444331 122111 23344445555555555 677788
Q ss_pred CCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 340 ALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 340 ~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+.+.++..+| .++...|++++|+..|+++++.+|++
T Consensus 350 ----~~~~~~~~~a-~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 350 ----VTSKWNRYAA-AALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred ----cchHHHHHHH-HHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 8777777788 88999999999999999999999995
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=190.07 Aligned_cols=191 Identities=18% Similarity=0.214 Sum_probs=118.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-----HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA-----VYYSNRAAA 221 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~ 221 (433)
.|++++|+..|+++++..|.+ ..++..++.++...|++++|++.+.+++...|.+. ..+..+|.+
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFA----------EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcch----------HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 355666666666665544433 44555556666666666666666666655555431 234455555
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHHHHHh
Q 013948 222 YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN-EAVKENIRMAEQKLREERQR 300 (433)
Q Consensus 222 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~a 300 (433)
+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+. .+++++..+|.+ ..++..++.++...|+.++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE-ALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 5666666666666666666666665666666666666666666666 666666555544 23444555555555555555
Q ss_pred cccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 301 TGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
...... ++..+| +...+ ..++ .++...|++++|+..++++++.+|++
T Consensus 269 ~~~l~~--------------------------~~~~~p-----~~~~~-~~la-~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 269 LEFLRR--------------------------ALEEYP-----GADLL-LALA-QLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHHHH--------------------------HHHhCC-----CchHH-HHHH-HHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 444332 556677 65444 7888 89999999999999999999999998
Q ss_pred c
Q 013948 381 R 381 (433)
Q Consensus 381 ~ 381 (433)
.
T Consensus 316 ~ 316 (389)
T PRK11788 316 R 316 (389)
T ss_pred H
Confidence 3
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=202.52 Aligned_cols=285 Identities=10% Similarity=-0.005 Sum_probs=226.3
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
..+++++|...++.++...|+.++++...+.+.......+.+......... .+|.+...
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~---------~~P~~~~a------------ 112 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLA---------VNVCQPED------------ 112 (656)
T ss_pred hcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHH---------hCCCChHH------------
Confidence 557899999999999999999997766555554444444444331100000 12222211
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC
Q 013948 114 DSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ 193 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 193 (433)
+..+...+. ..|++++|+..+++++...|.+ ..++..+|.++...|+
T Consensus 113 ----------~~~la~~l~-------------~~g~~~~Ai~~l~~Al~l~P~~----------~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 113 ----------VLLVASVLL-------------KSKQYATVADLAEQAWLAFSGN----------SQIFALHLRTLVLMDK 159 (656)
T ss_pred ----------HHHHHHHHH-------------HcCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHCCC
Confidence 111122222 2689999999999999998887 8889999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013948 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN-YSKAYSRLGLAYYAQGNYNDAIEKGFKK 272 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 272 (433)
+++|+..+.+++...|++..++..++ .+...|++++|+..+++++..+|. .......++.++...|++++|+. .|++
T Consensus 160 ~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~-~~~~ 237 (656)
T PRK15174 160 ELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQ-TGES 237 (656)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHH-HHHH
Confidence 99999999999999999988887764 478899999999999999998763 44455667889999999999999 9999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHHHHH----hcccccccC-CCccchh-----hhhhhcCCCCCCCCCcc--cccCCCCC
Q 013948 273 ALQLDPNNEAVKENIRMAEQKLREERQ----RTGWDQTTS-SSHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNA 340 (433)
Q Consensus 273 al~~~p~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~ 340 (433)
+++.+|+++.++..+|.++...|++++ |...++.+. ..|.... +..+...|++++|+..+ ++..+|
T Consensus 238 al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-- 315 (656)
T PRK15174 238 ALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-- 315 (656)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--
Confidence 999999999999999999999999875 677766665 3333322 56788889999999999 999999
Q ss_pred CCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 341 LPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 341 ~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+++.++..+| .++...|++++|+..|+++++.+|++
T Consensus 316 ---~~~~a~~~La-~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 316 ---DLPYVRAMYA-RALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred ---CCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 9999999999 99999999999999999999999998
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-21 Score=211.69 Aligned_cols=217 Identities=17% Similarity=0.159 Sum_probs=191.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH------------
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAV------------ 213 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------------ 213 (433)
..|++++|+..|+++++.+|.+ ..++..+|.++...|++++|+..|+++++.+|++..
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~----------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKD----------SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 3689999999999999999987 899999999999999999999999999999998642
Q ss_pred --HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 214 --YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 214 --~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
....+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+. +|+++++++|++..++..++.++
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~-~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAER-YYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHH
Confidence 224568899999999999999999999999999999999999999999999999 99999999999999999999988
Q ss_pred HHHHHHHHhcccccccCCCc---------------cchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhh
Q 013948 292 QKLREERQRTGWDQTTSSSH---------------YSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMAS 354 (433)
Q Consensus 292 ~~~~~~~~a~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~ 354 (433)
.. ++.++|..+........ ....+..+...|++++|+..| ++..+| +++.+++.+|
T Consensus 430 ~~-~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-----~~~~~~~~LA- 502 (1157)
T PRK11447 430 RQ-QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-----GSVWLTYRLA- 502 (1157)
T ss_pred Hh-cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHH-
Confidence 54 45677776655432111 011245577789999999999 999999 9999999999
Q ss_pred cccccCCChhhHHHHHhhhcCCCCCc
Q 013948 355 NMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.++..+|++++|+..++++++++|++
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~P~~ 528 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQKPND 528 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999998
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-21 Score=205.80 Aligned_cols=324 Identities=15% Similarity=0.075 Sum_probs=227.1
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
..+++++|+++|+++++++|++..++...+.++......+.+......... ..|.+......+...+..
T Consensus 477 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~~~l~~~~~~-- 545 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT---------IDPKNLRAILALAGLYLR-- 545 (899)
T ss_pred hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------hCcCcHHHHHHHHHHHHH--
Confidence 567899999999999999999986554444443333333333221100000 122222221111111111
Q ss_pred CCCCCChhHHHHHHHHHHHhhh----hhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Q 013948 114 DSTGVSKDELFGQFFAALEKFH----YFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM 189 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~ 189 (433)
.| ...+....+.+.+...+ .+..........|++++|+..+++++...|.+ ...|..+|.++.
T Consensus 546 --~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~ 612 (899)
T TIGR02917 546 --TG-NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDS----------PEAWLMLGRAQL 612 (899)
T ss_pred --cC-CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----------HHHHHHHHHHHH
Confidence 01 11122222222211110 00011111123688889999999888877766 778888999999
Q ss_pred HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 269 (433)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+. .
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~ 691 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK-I 691 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-H
Confidence 999999999999999999999999999999999999999999999999999999998899999999999999999998 8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCC-Cccch----hhhhhhcCCCCCCCCCcc--cccCCCCCCC
Q 013948 270 FKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSS-SHYSQ----ESNQSTGGFRSHGTPPSF--TMPFNTNALP 342 (433)
Q Consensus 270 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~----~~~~~~~~~~~~~A~~~~--al~~~p~~~~ 342 (433)
++.+....|.++..+..++.++...|++++|...+..+.. .+... .+..+...|++++|+..+ .+..+|
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~---- 767 (899)
T TIGR02917 692 AKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP---- 767 (899)
T ss_pred HHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----
Confidence 8888888888888888889888888888888888776652 22221 245677778888888888 788888
Q ss_pred ccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-cccccccc
Q 013948 343 TDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINL 388 (433)
Q Consensus 343 ~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~ 388 (433)
++..++..+| .++..+|++++|+..|+++++.+|++ ....++..
T Consensus 768 -~~~~~~~~la-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 812 (899)
T TIGR02917 768 -NDAVLRTALA-ELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAW 812 (899)
T ss_pred -CCHHHHHHHH-HHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8888888888 88888888888888888888888888 44444443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.4e-21 Score=205.70 Aligned_cols=343 Identities=11% Similarity=0.052 Sum_probs=246.9
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
..+++++|+.++++.++..|+++..+...+.++.....++.+......... ..|.+......+...+..
T Consensus 443 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---------~~~~~~~~~~~la~~~~~-- 511 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALS---------IEPDFFPAAANLARIDIQ-- 511 (899)
T ss_pred hcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHh---------hCCCcHHHHHHHHHHHHH--
Confidence 567899999999999999999987666666666655555555443211110 223222221111111100
Q ss_pred CCCCCChhHHHHHHHHHHHhhh----hhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Q 013948 114 DSTGVSKDELFGQFFAALEKFH----YFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM 189 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~ 189 (433)
.| ........+...+...+ .+..........|++++|+..+++++..+|.+ ...+..++.++.
T Consensus 512 --~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~ 578 (899)
T TIGR02917 512 --EG-NPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQE----------IEPALALAQYYL 578 (899)
T ss_pred --CC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----------hhHHHHHHHHHH
Confidence 00 11222222222222111 11111111123578899999999998887776 678888999999
Q ss_pred HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 269 (433)
..|++++|+..+++++...|.+..+|..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+. +
T Consensus 579 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~ 657 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT-S 657 (899)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCC-Cccch-----hhhhhhcCCCCCCCCCcc--cccCCCCCC
Q 013948 270 FKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSS-SHYSQ-----ESNQSTGGFRSHGTPPSF--TMPFNTNAL 341 (433)
Q Consensus 270 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~A~~~~--al~~~p~~~ 341 (433)
|+++++.+|++..++..++.++...|++++|......... .+... .+..+...|++++|+..| ++...|
T Consensus 658 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--- 734 (899)
T TIGR02917 658 LKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--- 734 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---
Confidence 9999999999999999999999999999998887766542 22221 256678889999999999 888888
Q ss_pred CccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccc-cCCcHHHHHHHHHHHhh
Q 013948 342 PTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFG-ENMPEDITGALRSMMEM 408 (433)
Q Consensus 342 ~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~~ 408 (433)
+. ..+..++ .++...|++++|+..++++++.+|++ .....+...+. ..+.++....++.+.+.
T Consensus 735 --~~-~~~~~l~-~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 735 --SS-QNAIKLH-RALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred --Cc-hHHHHHH-HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 55 6777888 89999999999999999999999998 33333332221 34555555555555543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-20 Score=174.05 Aligned_cols=220 Identities=14% Similarity=0.050 Sum_probs=176.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.+..+.++..+.++|...|.+ +...+..|+.+|.++...|++++|+..|+++++++|+++.+|+++|.++...|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLT------DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG 112 (296)
T ss_pred chHHHHHHHHHHHHHccccCC------cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence 367788999999999755433 23447889999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|+++++++|++..++.++|.++...|++++|+. .|+++++++|+++.....+ .+....++.++|...+..
T Consensus 113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~-~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD-DLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQ 190 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 9999999999998432222 223345667777777644
Q ss_pred cC-C-Cccch-hhhhhhcCCCCCCC--C----Ccc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcC
Q 013948 307 TS-S-SHYSQ-ESNQSTGGFRSHGT--P----PSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGS 375 (433)
Q Consensus 307 ~~-~-~~~~~-~~~~~~~~~~~~~A--~----~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~ 375 (433)
.. . .+..+ ....+...|++.++ + +.+ .+..+| ..+++|+++| .++..+|++++|+.+|+++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~-----~~~ea~~~Lg-~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 191 RYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAE-----RLCETYFYLA-KYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHH-----HHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHH
Confidence 32 1 12211 12333344555443 2 222 345566 7889999999 999999999999999999999
Q ss_pred CCCCc
Q 013948 376 DEPGI 380 (433)
Q Consensus 376 l~P~~ 380 (433)
++|.+
T Consensus 265 ~~~~~ 269 (296)
T PRK11189 265 NNVYN 269 (296)
T ss_pred hCCch
Confidence 99754
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-20 Score=180.17 Aligned_cols=147 Identities=16% Similarity=0.181 Sum_probs=140.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
..++|+|..+|++||..+|.+ ..+||.+|.+|.++++++.|.-+|++|+.++|.+..+...+|.++.++|
T Consensus 468 ~ee~d~a~~~fr~Al~~~~rh----------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k 537 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKALGVDPRH----------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLK 537 (638)
T ss_pred hHHHHhHHHHHHhhhcCCchh----------hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhh
Confidence 468999999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
+.++|+..|++|+.++|.++-..+..|.+++.++++++|+. .+++.-++-|++..++..+|.+|..+|+.+.|...+
T Consensus 538 ~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~-~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 538 RKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQ-ELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHH-HHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999988776653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-19 Score=190.39 Aligned_cols=189 Identities=15% Similarity=0.070 Sum_probs=161.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++...|. ...++.+|.++...|++++|+.+|++++..+|.+...+..++..+...|
T Consensus 522 ~Gr~eeAi~~~rka~~~~p~-----------~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 522 VEDYATALAAWQKISLHDMS-----------NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG 590 (987)
T ss_pred CCCHHHHHHHHHHHhccCCC-----------cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 58899999999987665443 2346788888889999999999999999998888888777777777779
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|+++++++|+ +.++..+|.++.++|++++|+. +|++++.++|+++.++.++|.++...|++++|...+..
T Consensus 591 r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~-~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 591 QPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVS-DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999996 8889999999999999999999 99999999999999999999999888888887776553
Q ss_pred cCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 307 TSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
++..+| +++.+++++| .++..+|++++|+..|+++++++|++
T Consensus 669 --------------------------AL~l~P-----~~~~a~~nLA-~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 669 --------------------------AHKGLP-----DDPALIRQLA-YVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred --------------------------HHHhCC-----CCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 567788 8888999999 88999999999999999999999987
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=169.20 Aligned_cols=196 Identities=15% Similarity=0.171 Sum_probs=175.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.++.++|+.+|+++++++|.. ..+|..+|.-|...++-..|++.|++|++++|.|..+|+.+|++|.-++
T Consensus 343 r~eHEKAv~YFkRALkLNp~~----------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 343 RSEHEKAVMYFKRALKLNPKY----------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred HHhHHHHHHHHHHHHhcCcch----------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc
Confidence 478999999999999999887 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
.+.=|+-+|++|+.+.|.++..|..||.||.++++.++|+. +|.+++.....+..++..||..|..+++..+|..++.+
T Consensus 413 Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK-Cykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 413 MHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK-CYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH-HHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999988775
Q ss_pred cCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 307 TSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
...... . .-..+| +...+..-++ ..+...+++++|-.+..+++.-+|
T Consensus 492 ~v~~~~-~------------------eg~~~~-----~t~ka~~fLA-~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 492 YVEVSE-L------------------EGEIDD-----ETIKARLFLA-EYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHHHH-h------------------hcccch-----HHHHHHHHHH-HHHHhhcchHHHHHHHHHHhcCCc
Confidence 332110 0 122455 6677777799 999999999999988877765433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-19 Score=181.23 Aligned_cols=191 Identities=13% Similarity=0.044 Sum_probs=171.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhcCCCHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS---------QQYSDAIELYSFAIALCGNNAVYYSN 217 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~ 217 (433)
.+++++|+.+|+++++++|.+ +.++..+|.++... +++++|+..++++++++|+++.++..
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~----------a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~ 343 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNS----------IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGL 343 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCcc----------HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 367889999999999999987 88888888877633 44899999999999999999999999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013948 218 RAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297 (433)
Q Consensus 218 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 297 (433)
+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+. +++++++++|.++.....++.++...|++
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~-~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQ-TINECLKLDPTRAAAGITKLWITYYHTGI 422 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcCCCChhhHHHHHHHHHhccCH
Confidence 99999999999999999999999999999999999999999999999999 99999999999988877777777778888
Q ss_pred HHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccC-CCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 298 RQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPF-NTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 298 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~-~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
++|..++++ ++.. .| +.+.++..+| .++..+|++++|...+++....
T Consensus 423 eeA~~~~~~--------------------------~l~~~~p-----~~~~~~~~la-~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 423 DDAIRLGDE--------------------------LRSQHLQ-----DNPILLSMQV-MFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHHH--------------------------HHHhccc-----cCHHHHHHHH-HHHHhCCCHHHHHHHHHHhhhc
Confidence 888777653 2333 36 7888899999 9999999999999999999888
Q ss_pred CCCc
Q 013948 377 EPGI 380 (433)
Q Consensus 377 ~P~~ 380 (433)
.|+.
T Consensus 471 ~~~~ 474 (553)
T PRK12370 471 EITG 474 (553)
T ss_pred cchh
Confidence 8887
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-18 Score=154.15 Aligned_cols=120 Identities=54% Similarity=0.935 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
++.+...|+-++..++|.+|+..|.+||.++|.++.+|.++|.+|.++|.++.|++.++.+|.++|.+..+|.+||.+|+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 77788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 298 (433)
.+|++++|++ .|+++|+++|++...+.+|..+..++++..
T Consensus 161 ~~gk~~~A~~-aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIE-AYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHH-HHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999 999999999999999999998887776655
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=184.59 Aligned_cols=191 Identities=16% Similarity=0.149 Sum_probs=177.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+.+++++++..|.. ...+..++......|++++|+..|++++.++|+ ..+++++|.++.++|
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~~----------~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG 623 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLGD----------NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH 623 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCcc----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC
Confidence 689999999999999987765 555666777777889999999999999999996 999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|++++.++|+++.++.++|.++...|++++|+. .|+++++++|+++.++.++|.++..+|++++|...++.
T Consensus 624 ~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~-~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 624 NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSRE-MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999998887663
Q ss_pred cCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCcc
Q 013948 307 TSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGIR 381 (433)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~~ 381 (433)
++.++| +.+......| .+.....+++.|.+.|+++...+|+..
T Consensus 703 --------------------------Al~l~P-----~~a~i~~~~g-~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 703 --------------------------VIDDID-----NQALITPLTP-EQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred --------------------------HHhcCC-----CCchhhhhhh-HHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 677889 9999999999 899999999999999999999999984
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=157.46 Aligned_cols=295 Identities=11% Similarity=0.048 Sum_probs=215.8
Q ss_pred chhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCCC
Q 013948 35 LEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPD 114 (433)
Q Consensus 35 ~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 114 (433)
.+++-.|+..|..|++.||++..+++.++..|..+..-..+..... ..+.+.+.+.-+..
T Consensus 51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~--------------------rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLS--------------------RVLELKPDFMAARI 110 (504)
T ss_pred hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHH--------------------HHHhcCccHHHHHH
Confidence 4568899999999999999998666655555555444433333110 01112111111111
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccch-----hhHHHHHHHHHHHHH
Q 013948 115 STGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQ-----KNLAEIFKCQGNRVM 189 (433)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-----~~~~~~~~~lg~~~~ 189 (433)
-+ +......|++++|+.-|..+|+.+|.++...... ....+.+......++
T Consensus 111 QR------------------------g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~ 166 (504)
T KOG0624|consen 111 QR------------------------GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSAS 166 (504)
T ss_pred Hh------------------------chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 11 1112237999999999999999998764322111 112233344445567
Q ss_pred HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 269 (433)
..|++..|++.....|++.|-++..+..++.||...|++..||..++.+-++..++.+.++.++.+++..|+.+.++. .
T Consensus 167 ~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~-~ 245 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK-E 245 (504)
T ss_pred cCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH-H
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHhhCCCCHHHHH---HHHHHHHHHHH---------HHHhcccccccCC-Cccchh---------hhhhhcCCCCCC
Q 013948 270 FKKALQLDPNNEAVKE---NIRMAEQKLRE---------ERQRTGWDQTTSS-SHYSQE---------SNQSTGGFRSHG 327 (433)
Q Consensus 270 ~~~al~~~p~~~~~~~---~l~~~~~~~~~---------~~~a~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~ 327 (433)
.+.+|+++|+....+- .+..+-..+.. |.+.....++... .|.... -..|...+++.+
T Consensus 246 iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 246 IRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 9999999999755433 33333222222 3333333333332 222111 133566699999
Q ss_pred CCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 328 TPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 328 A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
|+..+ ++.++| +++.++..++ .+|.-...|++|+.+|++|.+.+|++
T Consensus 326 AiqqC~evL~~d~-----~dv~~l~dRA-eA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 326 AIQQCKEVLDIDP-----DDVQVLCDRA-EAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHHHhcCc-----hHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 99999 999999 9999999999 99999999999999999999999999
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.4e-19 Score=165.16 Aligned_cols=215 Identities=15% Similarity=0.089 Sum_probs=194.4
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
|+.-.|...|+++|.++|.. ...|..+|..|...++.++-...|.+|.+++|+++++|+.+|.+++-+++
T Consensus 340 g~~~~a~~d~~~~I~l~~~~----------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAF----------NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred CCchhhhhhHHHHHhcCccc----------chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH
Confidence 88889999999999999886 45599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
+++|+..|+++++++|++..++..++.+.+++++++++.. .|+.+.+..|+.++++...+.++...+++++|.+.+..+
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~-~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMK-TFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999998877
Q ss_pred CCCccchh-------------hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhh
Q 013948 308 SSSHYSQE-------------SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNV 372 (433)
Q Consensus 308 ~~~~~~~~-------------~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~ 372 (433)
........ .......+++..|+..+ |+++|| ..-.++..|| .+..++|+.++|++.|++
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp-----kce~A~~tla-q~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDP-----KCEQAYETLA-QFELQRGKIDEAIELFEK 562 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCc-----hHHHHHHHHH-HHHHHHhhHHHHHHHHHH
Confidence 63222211 11233448999999999 999999 9999999999 999999999999999999
Q ss_pred hcCCCCC
Q 013948 373 SGSDEPG 379 (433)
Q Consensus 373 al~l~P~ 379 (433)
++.+.-.
T Consensus 563 sa~lArt 569 (606)
T KOG0547|consen 563 SAQLART 569 (606)
T ss_pred HHHHHHh
Confidence 9765433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-18 Score=180.28 Aligned_cols=245 Identities=9% Similarity=-0.040 Sum_probs=181.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHH----------------------------
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAI---------------------------- 198 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~---------------------------- 198 (433)
.|++++|+..+++++...|.+ ..++..+|.++...+..++|+
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~----------~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQT----------QQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999998887 778888888877666655444
Q ss_pred ------------------HHHHHHHHhcCCCHH-------HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH-HHHHHH
Q 013948 199 ------------------ELYSFAIALCGNNAV-------YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS-KAYSRL 252 (433)
Q Consensus 199 ------------------~~~~~al~~~p~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l 252 (433)
..+++++...|.++. +++.+..++...|++++|+..|+++++..|..+ .+...+
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~l 278 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWV 278 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHH
Confidence 444444443233221 122212234677999999999999999864422 344446
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHHHHHHHhcccccccCCC-c-------------c-c
Q 013948 253 GLAYYAQGNYNDAIEKGFKKALQLDPNN----EAVKENIRMAEQKLREERQRTGWDQTTSSS-H-------------Y-S 313 (433)
Q Consensus 253 g~~~~~~g~~~~A~~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------------~-~ 313 (433)
|.++..+|++++|+. +|+++++.+|.+ ......++.++...|++++|...+..+... | . .
T Consensus 279 a~~yl~~g~~e~A~~-~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 279 ASAYLKLHQPEKAQS-ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHhcCCcHHHHH-HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 999999999999999 999999988876 456777888888999999998886655432 2 1 1
Q ss_pred ------hhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-cccc
Q 013948 314 ------QESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGG 384 (433)
Q Consensus 314 ------~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~ 384 (433)
..+..+...|++++|+..+ ++...| +++.++..+| .++...|++++|+..++++++++|++ .+..
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-----~n~~l~~~lA-~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~ 431 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-----GNQGLRIDYA-SVLQARGWPRAAENELKKAEVLEPRNINLEV 431 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 1245677779999999999 899999 9999999999 99999999999999999999999998 3332
Q ss_pred cccc-ccccCCcHHHHHHHHHHHhh
Q 013948 385 NINL-NFGENMPEDITGALRSMMEM 408 (433)
Q Consensus 385 ~~~~-~l~~~~~~~~~~a~~~~~~~ 408 (433)
.... .+...+.++....++.+.+.
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 2222 22235566666666666544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-18 Score=166.66 Aligned_cols=218 Identities=12% Similarity=0.052 Sum_probs=189.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----AVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 222 (433)
.|++++|+..|++++..+|.+ ..++..+|.++...|++++|+..+++++...+.. ..++..+|.+|
T Consensus 48 ~~~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPET----------VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred cCChHHHHHHHHHHHhcCccc----------HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 589999999999999998876 7899999999999999999999999998753332 35789999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE-----AVKENIRMAEQKLREE 297 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~ 297 (433)
...|++++|+..|+++++.+|.+..++..++.++...|++++|+. .++++++..|.+. ..+..++.++...|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAID-VAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHH-HHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999999999 9999999888753 2566788888899999
Q ss_pred HHhcccccccCC-Cccch-----hhhhhhcCCCCCCCCCcc--cccCCCCCCCccH-HHHHHHHhhcccccCCChhhHHH
Q 013948 298 RQRTGWDQTTSS-SHYSQ-----ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDI-ASMLMNMASNMPQAQPSQSRQGE 368 (433)
Q Consensus 298 ~~a~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~-~~a~~~la~~~~~~~g~~~~A~~ 368 (433)
++|...+..+.. .+... .+..|...|++++|+..| ++..+| +. ..++..++ .++...|++++|+.
T Consensus 197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~~l~-~~~~~~g~~~~A~~ 270 (389)
T PRK11788 197 DAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP-----EYLSEVLPKLM-ECYQALGDEAEGLE 270 (389)
T ss_pred HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-----hhHHHHHHHHH-HHHHHcCCHHHHHH
Confidence 999998777653 22222 256788889999999999 787788 54 56778888 99999999999999
Q ss_pred HHhhhcCCCCCcc
Q 013948 369 DSNVSGSDEPGIR 381 (433)
Q Consensus 369 ~~~~al~l~P~~~ 381 (433)
.++++++.+|+..
T Consensus 271 ~l~~~~~~~p~~~ 283 (389)
T PRK11788 271 FLRRALEEYPGAD 283 (389)
T ss_pred HHHHHHHhCCCch
Confidence 9999999999873
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-18 Score=162.78 Aligned_cols=203 Identities=13% Similarity=0.087 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+-.|+..|..|+..|++.+|.++|.++..++|....+|...|..+...|..++|+.+|..|-++-|......+.+|.-|.
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYM 391 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 55566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCC-----Cc--------cchhhhhhhcCCC
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSS-----SH--------YSQESNQSTGGFR 324 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~--------~~~~~~~~~~~~~ 324 (433)
+.++++-|.. .|.+|+.+.|++|-++..+|.+....+.+.+|..+++.+.. .+ ....+..|...++
T Consensus 392 ~t~n~kLAe~-Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 392 RTNNLKLAEK-FFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HhccHHHHHH-HHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 6666666666 66666666666666666666666666666666665544430 00 0111344555566
Q ss_pred CCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCcccccccc
Q 013948 325 SHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGIRIGGNIN 387 (433)
Q Consensus 325 ~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~ 387 (433)
+++|+..| ++.+.| .++.++-.+| -++..+|+.+.|+..|.+||.++|++.....++
T Consensus 471 ~~eAI~~~q~aL~l~~-----k~~~~~asig-~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSP-----KDASTHASIG-YIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHHHHHHHHHHHHcCC-----CchhHHHHHH-HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 66666666 899999 9999999999 999999999999999999999999995554444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-17 Score=156.12 Aligned_cols=170 Identities=20% Similarity=0.287 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH------------------------------------
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAA------------------------------------ 220 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~------------------------------------ 220 (433)
.+.....+|+..+...++..|+.+|..++.++ .+...+.+.+-
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~ 301 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKAL 301 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999998 65544444444
Q ss_pred -----HHHHhhcHHHHHHHHHHHHhc--------------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 013948 221 -----AYTQIHQYAEAVRDCLKSIDI--------------------------DPNYSKAYSRLGLAYYAQGNYNDAIEKG 269 (433)
Q Consensus 221 -----~~~~~~~~~~A~~~~~~al~~--------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 269 (433)
.|.+.++++.|+.+|.+++.- +|.-..--...|..++..|+|..|+. +
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~-~ 380 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVK-H 380 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHH-H
Confidence 445555666666666665543 23333344456888888888888888 8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHH
Q 013948 270 FKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASML 349 (433)
Q Consensus 270 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~ 349 (433)
|.++++.+|+++..+.+.+.||.+++.+..+...... +++++| +...+|
T Consensus 381 YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~--------------------------~ieL~p-----~~~kgy 429 (539)
T KOG0548|consen 381 YTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKK--------------------------CIELDP-----NFIKAY 429 (539)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHH--------------------------HHhcCc-----hHHHHH
Confidence 8888888888888888888888888888877665331 688899 999999
Q ss_pred HHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 350 MNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 350 ~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
...| .++..+.+|++|++.|..++++||++
T Consensus 430 ~RKg-~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 430 LRKG-AALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 9999 99999999999999999999999998
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-18 Score=160.84 Aligned_cols=255 Identities=16% Similarity=0.150 Sum_probs=113.1
Q ss_pred CCchhHHHHHHHHHHhh-cC-CCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccc
Q 013948 33 VDLEGLEVARECLTEVF-KL-DSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWT 110 (433)
Q Consensus 33 ~~~~~~e~A~~~~~kAl-~l-dP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (433)
...+++++|++++.+++ .. +|++++.+...+.|......++.+.........
T Consensus 19 ~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~-------------------------- 72 (280)
T PF13429_consen 19 YQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA-------------------------- 72 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc--------------------------
Confidence 46678999999997665 55 588887777777777777777776663211110
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Q 013948 111 EEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ 190 (433)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~ 190 (433)
.+......+..+... ...+++++|+.++.++.+..+. +..+.....++..
T Consensus 73 -----~~~~~~~~~~~l~~l--------------~~~~~~~~A~~~~~~~~~~~~~-----------~~~l~~~l~~~~~ 122 (280)
T PF13429_consen 73 -----SDKANPQDYERLIQL--------------LQDGDPEEALKLAEKAYERDGD-----------PRYLLSALQLYYR 122 (280)
T ss_dssp ---------------------------------------------------------------------------H-HHH
T ss_pred -----ccccccccccccccc--------------cccccccccccccccccccccc-----------cchhhHHHHHHHH
Confidence 000000111111111 1257888888888888776543 4456666677888
Q ss_pred ccCHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 013948 191 SQQYSDAIELYSFAIALC--GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268 (433)
Q Consensus 191 ~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 268 (433)
.++++++...+.++.... +.++.+|..+|.++.+.|++++|+.+|+++++++|+++.+...++.++...|+++++..
T Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~- 201 (280)
T PF13429_consen 123 LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEARE- 201 (280)
T ss_dssp TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHH-
T ss_pred HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHH-
Confidence 899999999988877654 67788899999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHH
Q 013948 269 GFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASM 348 (433)
Q Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a 348 (433)
.+....+..|.++..+..+|.++..+|+.++|..++.+ ++..+| +++..
T Consensus 202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~--------------------------~~~~~p-----~d~~~ 250 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK--------------------------ALKLNP-----DDPLW 250 (280)
T ss_dssp HHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH--------------------------HHHHST-----T-HHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc--------------------------cccccc-----ccccc
Confidence 88888888888888888999999999999988888663 456688 88899
Q ss_pred HHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 349 LMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 349 ~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
+..+| .++...|+.++|...+++++..
T Consensus 251 ~~~~a-~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 251 LLAYA-DALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHH-HHHT------------------
T ss_pred ccccc-cccccccccccccccccccccc
Confidence 99999 9999999999999988887653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.4e-17 Score=145.86 Aligned_cols=189 Identities=14% Similarity=0.124 Sum_probs=162.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..++++++.+|.+ ..++..+|.++...|++++|+..|++++...|.+..+++++|.++...|
T Consensus 44 ~~~~~~A~~~~~~~l~~~p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHDPDD----------YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG 113 (234)
T ss_pred CCCHHHHHHHHHHHHHhCccc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 589999999999999988776 7888899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 013948 227 QYAEAVRDCLKSIDID--PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
++++|+..+++++... |.....+..+|.++...|++++|.. .+.+++..+|+++.++..++.++...|++++|...+
T Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 192 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK-YLTRALQIDPQRPESLLELAELYYLRGQYKDARAYL 192 (234)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999864 4567788899999999999999999 999999999999999999999999999999888776
Q ss_pred cccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 305 QTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
.. ++...| ..+..+..++ .++...|+.++|....+.+....|
T Consensus 193 ~~--------------------------~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 193 ER--------------------------YQQTYN-----QTAESLWLGI-RIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HH--------------------------HHHhCC-----CCHHHHHHHH-HHHHHHhhHHHHHHHHHHHHhhCc
Confidence 63 223356 6667777788 888889999999988877765544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=134.07 Aligned_cols=129 Identities=15% Similarity=0.153 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHH
Q 013948 154 SRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVR 233 (433)
Q Consensus 154 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 233 (433)
..++++++..+|.+ ++.+|.++...|++++|+..|++++..+|.+..+|+++|.++...|++++|+.
T Consensus 13 ~~~~~~al~~~p~~-------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 79 (144)
T PRK15359 13 EDILKQLLSVDPET-------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAIN 79 (144)
T ss_pred HHHHHHHHHcCHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 46789999998753 55689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013948 234 DCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 234 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
.|+++++++|+++.+++++|.++..+|++++|+. .|++++++.|+++..+.+++.+...++.
T Consensus 80 ~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~-~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 80 FYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE-AFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 9999999999999999999988876643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=149.82 Aligned_cols=197 Identities=17% Similarity=0.175 Sum_probs=170.0
Q ss_pred CcchHHHHHHHHHHHHHHHhhcccc--ccc----------------------hhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAH--AYN----------------------QKNLAEIFKCQGNRVMQSQQYSDAIELY 201 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~--~~~----------------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 201 (433)
...|+++|+..|+...+.+|-.-.. .+. +.-.++....+|+.|-..++.++|+.+|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence 4589999999999999987764211 110 0011222234566777788999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 202 SFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 202 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
++|+++||....+|..+|.=|..+++...|++.|++|++++|.+..+|+.+|++|--++.+.=|+- +|++|+++.|+|+
T Consensus 354 kRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLy-YfqkA~~~kPnDs 432 (559)
T KOG1155|consen 354 KRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALY-YFQKALELKPNDS 432 (559)
T ss_pred HHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHH-HHHHHHhcCCCch
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCC
Q 013948 282 AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQP 361 (433)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g 361 (433)
..|..||.||.++++.++|+.++..+. ...- -...++..+| .+|.+++
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai--------------------------~~~d-----te~~~l~~La-kLye~l~ 480 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAI--------------------------LLGD-----TEGSALVRLA-KLYEELK 480 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH--------------------------hccc-----cchHHHHHHH-HHHHHHH
Confidence 999999999999999999999988533 3333 4457899999 9999999
Q ss_pred ChhhHHHHHhhhcC
Q 013948 362 SQSRQGEDSNVSGS 375 (433)
Q Consensus 362 ~~~~A~~~~~~al~ 375 (433)
+..+|..+|++-++
T Consensus 481 d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999999887
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-16 Score=141.78 Aligned_cols=223 Identities=13% Similarity=0.098 Sum_probs=202.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
+|-+.+|.+.++..|...|. ++.+..++.+|.+..+...|+..|.+.++..|.+...+..++.++..++
T Consensus 236 Lgm~r~AekqlqssL~q~~~-----------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 236 LGMPRRAEKQLQSSLTQFPH-----------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred hcChhhhHHHHHHHhhcCCc-----------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 68889999999999998775 7889999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|++.|+.+++++|.+.++.--+|.-|+.-++.+-|+. +|++.|++.-.+++.+.++|.|+..-++++-+...++.
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alr-yYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALR-YYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHH-HHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999888877
Q ss_pred cCCC---ccchhhhhhhcC------CCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcC
Q 013948 307 TSSS---HYSQESNQSTGG------FRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGS 375 (433)
Q Consensus 307 ~~~~---~~~~~~~~~~~~------~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~ 375 (433)
+... +....-.||+.+ |++..|-..| ++..|| ++.+++.++| .+-...|+.++|...+..|-.
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-----~h~ealnNLa-vL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-----QHGEALNNLA-VLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-----chHHHHHhHH-HHHhhcCchHHHHHHHHHhhh
Confidence 7643 333335677666 9999999999 999999 9999999999 888889999999999999999
Q ss_pred CCCCc-ccccccc
Q 013948 376 DEPGI-RIGGNIN 387 (433)
Q Consensus 376 l~P~~-~~~~~~~ 387 (433)
..|+. ....|+.
T Consensus 458 ~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 458 VMPDMAEVTTNLQ 470 (478)
T ss_pred hCcccccccccee
Confidence 99987 5555554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.2e-17 Score=151.47 Aligned_cols=206 Identities=10% Similarity=0.009 Sum_probs=172.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ-QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.+..++|+..+.++|+++|.+ ..+|..++.++...| ++++++..+.+++..+|++..+|+.++.++.++
T Consensus 50 ~e~serAL~lt~~aI~lnP~~----------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l 119 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGN----------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKL 119 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchh----------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHc
Confidence 578899999999999999998 899999999999998 689999999999999999999999999999999
Q ss_pred hcH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 013948 226 HQY--AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGW 303 (433)
Q Consensus 226 ~~~--~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 303 (433)
++. ++++.+++++++.+|++..+|..+|.++...|+|++++. ++.++|+.+|.+..+|...+.+...++....-...
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~-~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELE-YCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 874 788999999999999999999999999999999999999 99999999999999999999887765321000000
Q ss_pred ccccCCCccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhccccc----CCChhhHHHHHhhhcCCC
Q 013948 304 DQTTSSSHYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQA----QPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~----~g~~~~A~~~~~~al~l~ 377 (433)
.++.+... +|..+| ++..+|..++ .++.. +++..+|...+..++..+
T Consensus 199 ---------------------~e~el~y~~~aI~~~P-----~N~SaW~Yl~-~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 199 ---------------------RDSELKYTIDAILANP-----RNESPWRYLR-GLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred ---------------------HHHHHHHHHHHHHhCC-----CCcCHHHHHH-HHHhcCCcccccchhHHHHHHHhhccc
Confidence 00111222 788999 9999999999 78877 456678999999999988
Q ss_pred CCccccccccccc
Q 013948 378 PGIRIGGNINLNF 390 (433)
Q Consensus 378 P~~~~~~~~~~~l 390 (433)
|.+...-.++..+
T Consensus 252 ~~s~~al~~l~d~ 264 (320)
T PLN02789 252 SNHVFALSDLLDL 264 (320)
T ss_pred CCcHHHHHHHHHH
Confidence 8884443334333
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-16 Score=146.80 Aligned_cols=170 Identities=11% Similarity=0.137 Sum_probs=143.0
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQY--SDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
++++++..+.+++..+|++ ..+|..++.++...|+. ++++.++.++++.+|++..+|..++.++...|
T Consensus 87 ~l~eeL~~~~~~i~~npkn----------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~ 156 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKN----------YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG 156 (320)
T ss_pred hHHHHHHHHHHHHHHCCcc----------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh
Confidence 6789999999999999998 88999999998888874 78899999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ---GNY----NDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQ 299 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~----~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 299 (433)
+++++++++.++|+.+|.+..+|..++.++... |.+ ++++. +..+++.++|++..+|..++.++...+..
T Consensus 157 ~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~-y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~-- 233 (320)
T PLN02789 157 GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK-YTIDAILANPRNESPWRYLRGLFKDDKEA-- 233 (320)
T ss_pred hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH-HHHHHHHhCCCCcCHHHHHHHHHhcCCcc--
Confidence 999999999999999999999999999999876 333 46788 88899999999999999999888642110
Q ss_pred hcccccccCCCccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhccccc
Q 013948 300 RTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQA 359 (433)
Q Consensus 300 a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~ 359 (433)
.++..+++..+ ++..+| ..+.++--++ .++..
T Consensus 234 ----------------------l~~~~~~~~~~~~~~~~~~-----~s~~al~~l~-d~~~~ 267 (320)
T PLN02789 234 ----------------------LVSDPEVSSVCLEVLSKDS-----NHVFALSDLL-DLLCE 267 (320)
T ss_pred ----------------------cccchhHHHHHHHhhcccC-----CcHHHHHHHH-HHHHh
Confidence 01111233333 566778 8888888888 88875
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-16 Score=166.92 Aligned_cols=186 Identities=11% Similarity=-0.001 Sum_probs=104.2
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHH
Q 013948 189 MQSQQYSDAIELYSFAIALCGNNA-VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY----SKAYSRLGLAYYAQGNYN 263 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~ 263 (433)
+..|++++|+..|+++++..|..+ .+...+|.+|..+|++++|+..|++++..+|.+ ......++.++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 344555555555555544432211 112223445555555555555555555444433 233444444445555555
Q ss_pred HHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHHHHHHHhcccccccC-CCccchh-----hhhhhcC
Q 013948 264 DAIEKGFKKALQLDPN---------------NEAVKENIRMAEQKLREERQRTGWDQTTS-SSHYSQE-----SNQSTGG 322 (433)
Q Consensus 264 ~A~~~~~~~al~~~p~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~-----~~~~~~~ 322 (433)
+|+. .++++....|. ...++..++.++...|+.++|+..+..+. ..|.+.. +..+...
T Consensus 328 eA~~-~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALT-VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHH-HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 5555 55555544431 12234444555555555555555444433 1222211 2334444
Q ss_pred CCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCcc
Q 013948 323 FRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGIR 381 (433)
Q Consensus 323 ~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~~ 381 (433)
|++++|+..+ ++.++| ++..+++.+| .++..+|++++|+..++++++.+|++.
T Consensus 407 g~~~~A~~~l~~al~l~P-----d~~~l~~~~a-~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 407 GWPRAAENELKKAEVLEP-----RNINLEVEQA-WTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred CCHHHHHHHHHHHHhhCC-----CChHHHHHHH-HHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 5555555555 788999 9999999999 899999999999999999999999983
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-16 Score=140.70 Aligned_cols=171 Identities=15% Similarity=0.156 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
.+..++.+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccc
Q 013948 257 YAQGNYNDAIEKGFKKALQLD--PNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTM 334 (433)
Q Consensus 257 ~~~g~~~~A~~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al 334 (433)
...|++++|+. .+++++... |.....+..++.++...|++++|...+.. ++
T Consensus 110 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------------------------~~ 162 (234)
T TIGR02521 110 CQQGKYEQAMQ-QFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTR--------------------------AL 162 (234)
T ss_pred HHcccHHHHHH-HHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------HH
Confidence 99999999999 999999854 55677889999999999999988877653 45
Q ss_pred cCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 335 PFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 335 ~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
..+| +++.++..+| .++...|++++|...+++++...|.+
T Consensus 163 ~~~~-----~~~~~~~~la-~~~~~~~~~~~A~~~~~~~~~~~~~~ 202 (234)
T TIGR02521 163 QIDP-----QRPESLLELA-ELYYLRGQYKDARAYLERYQQTYNQT 202 (234)
T ss_pred HhCc-----CChHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 6678 7888999999 99999999999999999999997776
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8e-17 Score=162.59 Aligned_cols=319 Identities=15% Similarity=0.091 Sum_probs=225.6
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHh-hhhhHhhhh---cccCCCCCCCCcccCCCccchhhhcccCccc
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIF-NSQQASDAL---GIKSDNAPSSSSAQNMDAKFSEASKSMGEDW 109 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (433)
-.+.++.|+.||++.++..|++.+.+.+.|+|+... ........+ ..+... ..|.++...+.+
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~---------~~~~d~~a~l~l---- 420 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE---------QTPVDSEAWLEL---- 420 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh---------cccccHHHHHHH----
Confidence 445677888888888888888887777777777776 222222221 000000 112222222221
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Q 013948 110 TEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM 189 (433)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~ 189 (433)
.+.+. .++.-.++.+|.+|+...-....+ --++.++++|..++
T Consensus 421 ------------------aql~e--------------~~d~~~sL~~~~~A~d~L~~~~~~-----ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 421 ------------------AQLLE--------------QTDPWASLDAYGNALDILESKGKQ-----IPPEVLNNVASLHF 463 (1018)
T ss_pred ------------------HHHHH--------------hcChHHHHHHHHHHHHHHHHcCCC-----CCHHHHHhHHHHHH
Confidence 11111 356666788888888765444322 12788999999999
Q ss_pred HccCHHHHHHHHHHHHHh-----cCC-----CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 013948 190 QSQQYSDAIELYSFAIAL-----CGN-----NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ 259 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~-----~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 259 (433)
..|++.+|...|.+|+.. +++ +...-||+|.|+..+++++.|.+.|..+++..|.+..++.++|.+....
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDK 543 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhc
Confidence 999999999999999877 222 2346899999999999999999999999999999999999999888889
Q ss_pred CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCc------cch--hhhhhhcC---------
Q 013948 260 GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSH------YSQ--ESNQSTGG--------- 322 (433)
Q Consensus 260 g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~--~~~~~~~~--------- 322 (433)
++..+|.. +++.++..+..++.+|..+|.++.....+..+...+......+ ... .+++|...
T Consensus 544 ~~~~ea~~-~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 544 NNLYEASL-LLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred cCcHHHHH-HHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 99999999 9999999999999999999999999999888877544332111 111 13433322
Q ss_pred ---CCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccc-cCCc
Q 013948 323 ---FRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFG-ENMP 395 (433)
Q Consensus 323 ---~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~-~~~~ 395 (433)
+.+++|++.| +|..+| .+.-+-..+| .++...|++.+|+..|.++.+---++ .++-|+.-.+- -.+.
T Consensus 623 k~kk~~~KAlq~y~kvL~~dp-----kN~yAANGIg-iVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRNDP-----KNMYAANGIG-IVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcCc-----chhhhccchh-hhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH
Confidence 6778888888 899999 8888888888 88999999999998888876654444 45555443220 1333
Q ss_pred HHHHHHHHHHHhhc
Q 013948 396 EDITGALRSMMEMF 409 (433)
Q Consensus 396 ~~~~~a~~~~~~~~ 409 (433)
....+.+..+++++
T Consensus 697 ~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKF 710 (1018)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444455444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=148.94 Aligned_cols=224 Identities=15% Similarity=0.132 Sum_probs=120.4
Q ss_pred CCCCCCchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcc
Q 013948 29 PAPGVDLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGED 108 (433)
Q Consensus 29 ~~~~~~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (433)
.......+++++|+.+|++.++.+|.++..+.....+ .....+..+.......+
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~------------------------- 104 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAY------------------------- 104 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc-------------------------
Confidence 3345678899999999999999999988665554444 23333333332110000
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Q 013948 109 WTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRV 188 (433)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~ 188 (433)
... .....+..+..... ..++++++...++++....+ .+..+..|..+|.++
T Consensus 105 -----~~~--~~~~~l~~~l~~~~-------------~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~a~~~ 156 (280)
T PF13429_consen 105 -----ERD--GDPRYLLSALQLYY-------------RLGDYDEAEELLEKLEELPA--------APDSARFWLALAEIY 156 (280)
T ss_dssp --------------------H-HH-------------HTT-HHHHHHHHHHHHH-T-----------T-HHHHHHHHHHH
T ss_pred -----ccc--cccchhhHHHHHHH-------------HHhHHHHHHHHHHHHHhccC--------CCCCHHHHHHHHHHH
Confidence 000 00011111111111 25899999999999775431 122378899999999
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 013948 189 MQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 268 (433)
...|++++|+.+|+++++.+|++..++..++.++...|+++++...+....+..|.++..|..+|.++..+|++++|+.
T Consensus 157 ~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~- 235 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALE- 235 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHH-
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccc-
Confidence 9999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 269 GFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
+|+++++.+|+|+..+..++.++...|+.++|....+.+
T Consensus 236 ~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 236 YLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999998887643
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.3e-16 Score=148.76 Aligned_cols=217 Identities=13% Similarity=0.102 Sum_probs=178.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN 261 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 261 (433)
+..|..+++.|+..+|+-+|+.|+..+|.++++|..||.+....++-..|+..+++|++++|++..++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCHH--------------------HHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhc
Q 013948 262 YNDAIEKGFKKALQLDPNNEA--------------------VKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTG 321 (433)
Q Consensus 262 ~~~A~~~~~~~al~~~p~~~~--------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 321 (433)
-.+|+. ++.+-+...|.... ....+...+....+.. -...........+.+|..
T Consensus 369 q~~Al~-~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~-----~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 369 QNQALK-MLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQL-----PTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HHHHHH-HHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhC-----CCCCChhHHhhhHHHHhc
Confidence 999999 99999877654321 1222222222221111 000111111223678899
Q ss_pred CCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccccCCcHHH
Q 013948 322 GFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFGENMPEDI 398 (433)
Q Consensus 322 ~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~~~~~~~~ 398 (433)
.|+|+.|+.+| ||..+| ++...|..|| ..+..-.+.++|+..|++|++|.|.+ .+++|+++.. ++.+..
T Consensus 443 s~efdraiDcf~~AL~v~P-----nd~~lWNRLG-AtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~--mNlG~y 514 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKP-----NDYLLWNRLG-ATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC--MNLGAY 514 (579)
T ss_pred chHHHHHHHHHHHHHhcCC-----chHHHHHHhh-HHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh--hhhhhH
Confidence 99999999999 999999 9999999999 99999999999999999999999999 9999999877 677777
Q ss_pred HHHHHHHHhhcCCC
Q 013948 399 TGALRSMMEMFSGP 412 (433)
Q Consensus 399 ~~a~~~~~~~~~~~ 412 (433)
.+|.+.+.+.+...
T Consensus 515 kEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777665544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7e-16 Score=132.86 Aligned_cols=191 Identities=16% Similarity=0.103 Sum_probs=160.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++..|...++++|+.+|.+ ..+|..++.+|...|+.+.|-+.|++|+.++|++.++++|.|.-++.+|
T Consensus 48 ~gd~~~A~~nlekAL~~DPs~----------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 48 QGDYAQAKKNLEKALEHDPSY----------YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred CCCHHHHHHHHHHHHHhCccc----------HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 599999999999999999887 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 013948 227 QYAEAVRDCLKSIDI--DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 227 ~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
+|++|...|++|+.. .|..+..|-++|.|..+.|+++.|.. +|+++|+++|+++.....++..+...|++..|..++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~-~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE-YLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH-HHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 999999999999986 34567899999999999999999999 999999999999999999999999999999888876
Q ss_pred cccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 305 QTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+...... .+ .++.+. ||..+-...|+.+.|-++-.+...+.|..
T Consensus 197 ~~~~~~~-------------------------~~------~A~sL~-L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 197 ERYQQRG-------------------------GA------QAESLL-LGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHhcc-------------------------cc------cHHHHH-HHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 6322111 12 222333 33256667788888888777777777775
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=152.07 Aligned_cols=191 Identities=16% Similarity=0.144 Sum_probs=169.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++.+|.-+|+.++..+|.+ +++|..||.+....++-..||..++++++++|++..++..||.+|...|
T Consensus 298 nG~L~~A~LafEAAVkqdP~h----------aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQH----------AEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred cCCchHHHHHHHHHHhhChHH----------HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 588999999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCC-------------------------------------------CcHHHHHHHHHHHHHcCCHH
Q 013948 227 QYAEAVRDCLKSIDIDP-------------------------------------------NYSKAYSRLGLAYYAQGNYN 263 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p-------------------------------------------~~~~~~~~lg~~~~~~g~~~ 263 (433)
.-.+|+.++.+=|+..| .+++++..||.+|...|+|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 88888888887655532 46778888999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCc
Q 013948 264 DAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPT 343 (433)
Q Consensus 264 ~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~ 343 (433)
+|+. +|+.||..+|+|...|..||.++..-.+.++|+.-|.+ |+++.|
T Consensus 448 raiD-cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r--------------------------ALqLqP----- 495 (579)
T KOG1125|consen 448 RAVD-CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNR--------------------------ALQLQP----- 495 (579)
T ss_pred HHHH-HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHH--------------------------HHhcCC-----
Confidence 9998 99999999999999999998887666666655554442 788999
Q ss_pred cHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 344 DIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 344 ~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.+..++++|| ..+..+|.|++|.++|-.||.+.+..
T Consensus 496 ~yVR~RyNlg-IS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 496 GYVRVRYNLG-ISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred Ceeeeehhhh-hhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 9999999999 99999999999999999999998774
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-15 Score=135.68 Aligned_cols=300 Identities=17% Similarity=0.195 Sum_probs=220.2
Q ss_pred CCCCCCCCCC-hhhHHHHHHHHHHhhhhCCCCCCCchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhc
Q 013948 1 MANSRIQTDS-PLSRRIVRSFLHFLDSVEPAPGVDLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALG 79 (433)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~ 79 (433)
||+++-+.+- -.+.+|-|+|+.-|+-+. .++-++|++.|.+.++.||...++....|+|+..-+..+.++.
T Consensus 19 mgrrsaqq~~~~qa~~lsr~Yv~GlNfLL------s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIR-- 90 (389)
T COG2956 19 MGRRSAQQDKQDQANRLSRDYVKGLNFLL------SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIR-- 90 (389)
T ss_pred HhhhHHHhhHHHHHhhccHHHHhHHHHHh------hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHH--
Confidence 4454444442 244445566665555552 2346799999999999999999887777777766666666554
Q ss_pred ccCCCCCCCCcccCCCccchhhhcccCcccccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHH
Q 013948 80 IKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHD 159 (433)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 159 (433)
++..+.+.+....-...-...++.+.+.. .|-+|.|...|..
T Consensus 91 -------------------------iHQ~L~~spdlT~~qr~lAl~qL~~Dym~-------------aGl~DRAE~~f~~ 132 (389)
T COG2956 91 -------------------------IHQTLLESPDLTFEQRLLALQQLGRDYMA-------------AGLLDRAEDIFNQ 132 (389)
T ss_pred -------------------------HHHHHhcCCCCchHHHHHHHHHHHHHHHH-------------hhhhhHHHHHHHH
Confidence 33333333333323333334445555554 6899999999999
Q ss_pred HHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhhcHHHHHHH
Q 013948 160 AINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-----AVYYSNRAAAYTQIHQYAEAVRD 234 (433)
Q Consensus 160 al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~ 234 (433)
..+..... ..+...+-.+|....+|++||+.-++..++.+.. +..|+.+|..+....+.+.|+..
T Consensus 133 L~de~efa----------~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 133 LVDEGEFA----------EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred Hhcchhhh----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 88753332 6688889999999999999999999999998876 56799999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHHHHHhcccccccCCCccc
Q 013948 235 CLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN-EAVKENIRMAEQKLREERQRTGWDQTTSSSHYS 313 (433)
Q Consensus 235 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 313 (433)
+.+|+..+|++..+-..+|.+....|+|++|++ .++.+++.||.. +.+...|..||..+|+.++...+....
T Consensus 203 l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~-~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~------ 275 (389)
T COG2956 203 LKKALQADKKCVRASIILGRVELAKGDYQKAVE-ALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA------ 275 (389)
T ss_pred HHHHHhhCccceehhhhhhHHHHhccchHHHHH-HHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH------
Confidence 999999999999999999999999999999999 999999999986 567888999999999999887775532
Q ss_pred hhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-cccccccccc
Q 013948 314 QESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNF 390 (433)
Q Consensus 314 ~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l 390 (433)
++..+ . +.+-..++ .+.....=.++|.....+-+...|+. .+...+-..+
T Consensus 276 --------------------~~~~~-----g-~~~~l~l~-~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 276 --------------------METNT-----G-ADAELMLA-DLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred --------------------HHccC-----C-ccHHHHHH-HHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 22233 1 11222333 33333444577888888888999998 5555444444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.6e-16 Score=131.99 Aligned_cols=170 Identities=15% Similarity=0.126 Sum_probs=157.0
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 255 (433)
..+.+...+|.-|+..|++..|...+++||+.+|++..+|..+|.+|...|+.+.|.+.|++|++++|++..++.+.|..
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCccc
Q 013948 256 YYAQGNYNDAIEKGFKKALQL--DPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFT 333 (433)
Q Consensus 256 ~~~~g~~~~A~~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~a 333 (433)
++.+|++++|.. +|++|+.. .|.-...+.++|.|-.+.|+.+.|...++. +
T Consensus 113 LC~qg~~~eA~q-~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r--------------------------a 165 (250)
T COG3063 113 LCAQGRPEEAMQ-QFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR--------------------------A 165 (250)
T ss_pred HHhCCChHHHHH-HHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH--------------------------H
Confidence 999999999999 99999973 345678999999999999999988887663 6
Q ss_pred ccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 334 MPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 334 l~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
+..+| +++.+...++ ..+...|++..|...+++-...-+
T Consensus 166 L~~dp-----~~~~~~l~~a-~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 166 LELDP-----QFPPALLELA-RLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred HHhCc-----CCChHHHHHH-HHHHhcccchHHHHHHHHHHhccc
Confidence 78899 9999999999 999999999999999988766655
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=154.73 Aligned_cols=225 Identities=13% Similarity=0.084 Sum_probs=184.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-AVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~ 225 (433)
.|+|..+..+...++..... ....++.+|.+|.++..+|+|++|..+|.+++..+|++ .-.++.+|.++.+.
T Consensus 283 K~dy~~v~~la~~ai~~t~~-------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTEN-------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 58999999999999887532 24458889999999999999999999999999999998 78899999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH----
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG----NYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE---- 297 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~---- 297 (433)
|+++.|+.+|+++++..|++.+....||.+|...+ .-+.|.. ++.++++..|.+..+|..++.++.....+
T Consensus 356 ~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~-~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~ 434 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASN-VLGKVLEQTPVDSEAWLELAQLLEQTDPWASLD 434 (1018)
T ss_pred chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHH-HHHHHHhcccccHHHHHHHHHHHHhcChHHHHH
Confidence 99999999999999999999999999999998886 6788999 99999999999999999999988755443
Q ss_pred --HHhcccccccCCC-cc---chhhhhhhcCCCCCCCCCcc--cccC-----CCCCCCccHHHHHHHHhhcccccCCChh
Q 013948 298 --RQRTGWDQTTSSS-HY---SQESNQSTGGFRSHGTPPSF--TMPF-----NTNALPTDIASMLMNMASNMPQAQPSQS 364 (433)
Q Consensus 298 --~~a~~~~~~~~~~-~~---~~~~~~~~~~~~~~~A~~~~--al~~-----~p~~~~~~~~~a~~~la~~~~~~~g~~~ 364 (433)
..|.......... |. +..+..+...|++.+|...| |+.. ++.....-....-+++| .++..+++++
T Consensus 435 ~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla-rl~E~l~~~~ 513 (1018)
T KOG2002|consen 435 AYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA-RLLEELHDTE 513 (1018)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH-HHHHhhhhhh
Confidence 3333332222211 11 22367788899999999999 5444 33110112244689999 9999999999
Q ss_pred hHHHHHhhhcCCCCCc
Q 013948 365 RQGEDSNVSGSDEPGI 380 (433)
Q Consensus 365 ~A~~~~~~al~l~P~~ 380 (433)
.|.+.|+..++..|.+
T Consensus 514 ~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 514 VAEEMYKSILKEHPGY 529 (1018)
T ss_pred HHHHHHHHHHHHCchh
Confidence 9999999999999999
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.5e-15 Score=140.04 Aligned_cols=192 Identities=15% Similarity=0.057 Sum_probs=145.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|+++++.+|++ +.+|+.+|.++...|++++|+..|+++++++|++..+|+++|.++...|
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 146 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDM----------ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGG 146 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 689999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh--cccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQR--TGWD 304 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a--~~~~ 304 (433)
++++|+..|+++++++|+++.....+ .+....+++++|+. .|.+++...+.+. |. .+.+...+|+...+ ....
T Consensus 147 ~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~-~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~~~~~~~ 221 (296)
T PRK11189 147 RYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKE-NLKQRYEKLDKEQ--WG-WNIVEFYLGKISEETLMERL 221 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHH-HHHHHHhhCCccc--cH-HHHHHHHccCCCHHHHHHHH
Confidence 99999999999999999998432222 23456789999999 9988775533222 22 24444445554222 1111
Q ss_pred cccC-C----Cccch-----hhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccc
Q 013948 305 QTTS-S----SHYSQ-----ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQ 358 (433)
Q Consensus 305 ~~~~-~----~~~~~-----~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~ 358 (433)
.... . .+... .+..+...|++++|+..| ++..+| .++.+..+.+. .+..
T Consensus 222 ~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~----~~~~e~~~~~~-e~~~ 282 (296)
T PRK11189 222 KAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV----YNFVEHRYALL-ELAL 282 (296)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----chHHHHHHHHH-HHHH
Confidence 1111 1 11111 156677889999999999 999996 17777776666 4443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-15 Score=143.32 Aligned_cols=148 Identities=32% Similarity=0.508 Sum_probs=130.3
Q ss_pred CcchHHHHHHHHHHHHHHHhh--cc--------------ccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC
Q 013948 146 DPSQVDKASRIFHDAINEMEK--SG--------------AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG 209 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~--~~--------------~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 209 (433)
..++++.++.+|++++..... .- ....-.|..+......|+.++..|+|..|+.+|.+||..+|
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 357888888888887765433 10 11123445566777889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013948 210 NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRM 289 (433)
Q Consensus 210 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~ 289 (433)
+++.+|.|+|.||.+++.+..|+..++++++++|++..+|++.|.++..+.+|++|.+ .|+++++++|++.++...+.+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAle-ay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALE-AYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHH
Q 013948 290 AEQKL 294 (433)
Q Consensus 290 ~~~~~ 294 (433)
|...+
T Consensus 469 c~~a~ 473 (539)
T KOG0548|consen 469 CVEAQ 473 (539)
T ss_pred HHHHh
Confidence 98876
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=141.01 Aligned_cols=275 Identities=13% Similarity=0.114 Sum_probs=200.5
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
.+.+|.+|+..|..||+++|+++..|-.....+.++..++.+.- |.-..+.+.+-..+
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~--------------------dar~~~r~kd~~~k-- 118 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALG--------------------DARQSVRLKDGFSK-- 118 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhccc--------------------chhhheecCCCccc--
Confidence 56689999999999999999998666666666666666654432 22222333333333
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC
Q 013948 114 DSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ 193 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 193 (433)
...............+.....+.+.. .+....|+..+++.+..+. ..|....+-...+.|+...|+
T Consensus 119 --~~~r~~~c~~a~~~~i~A~~~~~~~~-----~~~~anal~~~~~~~~s~s-------~~pac~~a~~lka~cl~~~~~ 184 (486)
T KOG0550|consen 119 --GQLREGQCHLALSDLIEAEEKLKSKQ-----AYKAANALPTLEKLAPSHS-------REPACFKAKLLKAECLAFLGD 184 (486)
T ss_pred --cccchhhhhhhhHHHHHHHHHhhhhh-----hhHHhhhhhhhhccccccc-------CCchhhHHHHhhhhhhhhccc
Confidence 22223334444444444433333110 1122223333333322221 224456677788899999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH------------HHHHHHHHHHHHcCC
Q 013948 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS------------KAYSRLGLAYYAQGN 261 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~lg~~~~~~g~ 261 (433)
+++|+..--..+++++.+..+++.+|.|++...+.+.|+..|++++.++|++. ..|-..|.-.++.|+
T Consensus 185 ~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~ 264 (486)
T KOG0550|consen 185 YDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGN 264 (486)
T ss_pred chhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccc
Confidence 99999999999999999999999999999999999999999999999999863 456667999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcc--ccc
Q 013948 262 YNDAIEKGFKKALQLDPNNE----AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF--TMP 335 (433)
Q Consensus 262 ~~~A~~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~ 335 (433)
|..|.+ +|..+|.++|++. ..+.+.+.+...+|+..+|+. .. ++.
T Consensus 265 y~~A~E-~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eais----------------------------dc~~Al~ 315 (486)
T KOG0550|consen 265 YRKAYE-CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAIS----------------------------DCNEALK 315 (486)
T ss_pred hhHHHH-HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhh----------------------------hhhhhhh
Confidence 999999 9999999999853 456666777777776665443 34 788
Q ss_pred CCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 336 FNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 336 ~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
++| ....+++.+| .++..++++++|+++|++++++.-+
T Consensus 316 iD~-----syikall~ra-~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 316 IDS-----SYIKALLRRA-NCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred cCH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999 9999999999 9999999999999999999988666
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-15 Score=135.68 Aligned_cols=190 Identities=18% Similarity=0.172 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHH---H
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA---VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSK---A 248 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~ 248 (433)
...+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++.+|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 33478999999999999999999999999999999876 68899999999999999999999999999998775 7
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhh
Q 013948 249 YSRLGLAYYAQ--------GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQST 320 (433)
Q Consensus 249 ~~~lg~~~~~~--------g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 320 (433)
++.+|.++... |++++|+. .|++++..+|++..++..+..+....+..... ....+..|.
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~-----------~~~~a~~~~ 177 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFE-AFQELIRRYPNSEYAPDAKKRMDYLRNRLAGK-----------ELYVARFYL 177 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHH-HHHHHHHHCCCChhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 99999999987 89999999 99999999999977665444332222221111 012345678
Q ss_pred cCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 321 GGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 321 ~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
..|++.+|+..+ ++...|+ .| ..+.+++.+| .++..+|++++|..+++......|+
T Consensus 178 ~~g~~~~A~~~~~~al~~~p~-~~-~~~~a~~~l~-~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 178 KRGAYVAAINRFETVVENYPD-TP-ATEEALARLV-EAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HcCChHHHHHHHHHHHHHCCC-Cc-chHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 888999999888 7777551 11 6779999999 9999999999999988877665553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-14 Score=126.53 Aligned_cols=127 Identities=23% Similarity=0.288 Sum_probs=119.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAY-TQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~ 225 (433)
.++.++++..+++++..+|++ ...|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~----------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~ 121 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN----------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQA 121 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 578899999999999999998 899999999999999999999999999999999999999999985 677
Q ss_pred hc--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHH
Q 013948 226 HQ--YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284 (433)
Q Consensus 226 ~~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~ 284 (433)
|+ +++|...++++++.+|+++.+++.+|.+++..|++++|+. +++++++++|.+.+-.
T Consensus 122 g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~-~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 122 GQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE-LWQKVLDLNSPRVNRT 181 (198)
T ss_pred CCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCCccHH
Confidence 87 5999999999999999999999999999999999999999 9999999998765443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-14 Score=144.69 Aligned_cols=218 Identities=13% Similarity=0.063 Sum_probs=174.2
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
|++++|..++.++|..+|.+ ..+|+.||.+|...|+.+++..+.-.|--++|++...|..++....++|+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~----------~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRN----------PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred CCHHHHHHHHHHHHHhCccc----------hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 99999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH-------------------------
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA------------------------- 282 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~------------------------- 282 (433)
+.+|.-+|.+||+++|.+....+..+.+|.++|++..|.. .|.+++.++|....
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~-~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME-TFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH-HHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999999999999 99999999983210
Q ss_pred ----------------HHHHHHHHHHHHHHHHHhcccccccCC-----Cccch------------------------h--
Q 013948 283 ----------------VKENIRMAEQKLREERQRTGWDQTTSS-----SHYSQ------------------------E-- 315 (433)
Q Consensus 283 ----------------~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~------------------------~-- 315 (433)
...-++.++.+..+++.+......... .+..+ .
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 111223333333344433322110000 00000 0
Q ss_pred ---------------------------------------hhhhhcCCCCCCCCCcc-cccCCCCCCCccHHHHHHHHhhc
Q 013948 316 ---------------------------------------SNQSTGGFRSHGTPPSF-TMPFNTNALPTDIASMLMNMASN 355 (433)
Q Consensus 316 ---------------------------------------~~~~~~~~~~~~A~~~~-al~~~p~~~~~~~~~a~~~la~~ 355 (433)
+..|...|+|.+|+..| .+...| +.++..+|+.+| .
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~---~~~~~~vw~~~a-~ 457 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE---GYQNAFVWYKLA-R 457 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc---cccchhhhHHHH-H
Confidence 01234448888888888 443333 135577999999 9
Q ss_pred ccccCCChhhHHHHHhhhcCCCCCc
Q 013948 356 MPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 356 ~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+|..+|.+++|+..|++++.++|++
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~~ 482 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPDN 482 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-15 Score=122.91 Aligned_cols=103 Identities=13% Similarity=0.011 Sum_probs=99.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++..+|.+ ..++..+|.++...|++++|+..|++++.++|+++.+++++|.++..+|
T Consensus 37 ~g~~~~A~~~~~~al~~~P~~----------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 37 EGDYSRAVIDFSWLVMAQPWS----------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred cCCHHHHHHHHHHHHHcCCCc----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 589999999999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ 259 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 259 (433)
++++|+..|++++++.|+++..+..+|.+...+
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999887654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-15 Score=136.39 Aligned_cols=259 Identities=12% Similarity=0.077 Sum_probs=205.8
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
-.+++.+|+.-|+++.-+||.+..++-.++.|..+-..++...... +..+...
T Consensus 244 ~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~----------------------~~Lf~~~----- 296 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM----------------------DYLFAKV----- 296 (564)
T ss_pred hhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH----------------------HHHHhhh-----
Confidence 3467889999999999999999877766666665544443332210 0000000
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC
Q 013948 114 DSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ 193 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 193 (433)
..+... |--.+....+.+++..|+.+-+++|+.+|.+ ..++...|..+...|+
T Consensus 297 ---~~ta~~--------------wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~----------~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 297 ---KYTASH--------------WFVHAQLLYDEKKFERALNFVEKCIDSEPRN----------HEALILKGRLLIALER 349 (564)
T ss_pred ---hcchhh--------------hhhhhhhhhhhhhHHHHHHHHHHHhccCccc----------chHHHhccHHHHhccc
Confidence 000111 1111222224589999999999999999988 8999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH-HHHHH-cCCHHHHHHHHHH
Q 013948 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG-LAYYA-QGNYNDAIEKGFK 271 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg-~~~~~-~g~~~~A~~~~~~ 271 (433)
.++|+..|+.|..+.|.+..+|-.+-.+|+..|++.+|....+.+++.-|.++.++-.+| .++.. -.--++|.. .++
T Consensus 350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKk-f~e 428 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKK-FAE 428 (564)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHH-HHH
Confidence 999999999999999999999999999999999999999999999999999999999997 55543 344578898 999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHH
Q 013948 272 KALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMN 351 (433)
Q Consensus 272 ~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~ 351 (433)
++|+++|....+...++..+...|++..++...++. +...| +...+..
T Consensus 429 k~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~--------------------------L~~~~------D~~LH~~ 476 (564)
T KOG1174|consen 429 KSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH--------------------------LIIFP------DVNLHNH 476 (564)
T ss_pred hhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHH--------------------------Hhhcc------ccHHHHH
Confidence 999999999999999999999999999888776642 33334 3357888
Q ss_pred HhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 352 MASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 352 la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+| .++...+.+.+|+..|..|+.+||.+
T Consensus 477 Lg-d~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 477 LG-DIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HH-HHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 99 99999999999999999999999997
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.6e-14 Score=138.80 Aligned_cols=134 Identities=17% Similarity=0.131 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
.|...|..+...++.++|..++.++-.++|..+..|+..|.++...|++++|.+ .|..++.++|+++.....+|.++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~-af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKE-AFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHH-HHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 366777777788888888888888888888888888888888888888888888 8888888888888888888888888
Q ss_pred HHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHh
Q 013948 294 LREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSN 371 (433)
Q Consensus 294 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~ 371 (433)
.|+..-+.... .+ ++..+| .++++|+.+| .++..+|+.++|.++|.
T Consensus 731 ~G~~~la~~~~--------------------------~L~dalr~dp-----~n~eaW~~LG-~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 731 LGSPRLAEKRS--------------------------LLSDALRLDP-----LNHEAWYYLG-EVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hCCcchHHHHH--------------------------HHHHHHhhCC-----CCHHHHHHHH-HHHHHccchHHHHHHHH
Confidence 88543332210 12 789999 9999999999 99999999999999999
Q ss_pred hhcCCCCCc
Q 013948 372 VSGSDEPGI 380 (433)
Q Consensus 372 ~al~l~P~~ 380 (433)
.|+++++++
T Consensus 779 aa~qLe~S~ 787 (799)
T KOG4162|consen 779 AALQLEESN 787 (799)
T ss_pred HHHhhccCC
Confidence 999999998
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=139.95 Aligned_cols=149 Identities=18% Similarity=0.239 Sum_probs=123.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+.++|+.+|..|-++.|.. ......+|.-|...++++-|..+|.+|+.+.|+++-.+..+|.+.+..+
T Consensus 359 e~EhdQAmaaY~tAarl~~G~----------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~ 428 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAARLMPGC----------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYE 428 (611)
T ss_pred cchHHHHHHHHHHHHHhccCC----------cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHh
Confidence 477888888888888888876 5667778888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDID-------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQ 299 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 299 (433)
.|.+|..+|++++..- +.....+.+||.++.+++.+++|+. +|+++|.+.|.++.++..+|.++..+|+.+.
T Consensus 429 ~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~-~~q~aL~l~~k~~~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 429 EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID-YYQKALLLSPKDASTHASIGYIYHLLGNLDK 507 (611)
T ss_pred hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH-HHHHHHHcCCCchhHHHHHHHHHHHhcChHH
Confidence 8888888888888331 2245668888888888888888888 8888888888888888888888888888888
Q ss_pred hcccccc
Q 013948 300 RTGWDQT 306 (433)
Q Consensus 300 a~~~~~~ 306 (433)
|+.++.+
T Consensus 508 Aid~fhK 514 (611)
T KOG1173|consen 508 AIDHFHK 514 (611)
T ss_pred HHHHHHH
Confidence 7777654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-15 Score=139.12 Aligned_cols=196 Identities=14% Similarity=0.033 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+.++.+.|++.+..|++++|.+.|..++..+..+..+++++|..+..+|+.++|+.+|-+...+--++..+++.++.+|.
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 67778888899999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc-CCCcc-----chhhhhhhcCCCCCCCCCc
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT-SSSHY-----SQESNQSTGGFRSHGTPPS 331 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~A~~~ 331 (433)
.+.+..+|++ ++.++..+-|+++.++..|+..|-..|+..+|..++-.. ..-|. .+.+.+|....-+++|+.+
T Consensus 570 ~led~aqaie-~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 570 LLEDPAQAIE-LLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred HhhCHHHHHH-HHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999988874322 22222 2336778888889999999
Q ss_pred c--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 332 F--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 332 ~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
| +--+.| +.....+..+ .++...|+|..|+..|+....-.|++
T Consensus 649 ~ekaaliqp-----~~~kwqlmia-sc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 649 FEKAALIQP-----NQSKWQLMIA-SCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred HHHHHhcCc-----cHHHHHHHHH-HHHHhcccHHHHHHHHHHHHHhCccc
Confidence 9 888899 7777777778 89999999999999999999999998
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.60 E-value=6e-14 Score=116.46 Aligned_cols=124 Identities=19% Similarity=0.274 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHH
Q 013948 155 RIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRD 234 (433)
Q Consensus 155 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 234 (433)
+.+++++...|.+ ..+.+.+|..++..|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..
T Consensus 4 ~~~~~~l~~~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 73 (135)
T TIGR02552 4 ATLKDLLGLDSEQ----------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDA 73 (135)
T ss_pred hhHHHHHcCChhh----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888876 788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013948 235 CLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRM 289 (433)
Q Consensus 235 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~ 289 (433)
+++++..+|+++..++.+|.++...|++++|+. +|+++++++|++.........
T Consensus 74 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~~ 127 (135)
T TIGR02552 74 YALAAALDPDDPRPYFHAAECLLALGEPESALK-ALDLAIEICGENPEYSELKER 127 (135)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhccccchHHHHHHH
Confidence 999999999999999999999999999999999 999999999998875544433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-13 Score=125.93 Aligned_cols=154 Identities=19% Similarity=0.115 Sum_probs=136.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAV---YYSNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~ 223 (433)
.|++++|+..+++++..+|.+ +....+++.+|.+++..|++++|+..|+++++.+|+++. +++.+|.++.
T Consensus 46 ~~~~~~A~~~~~~~~~~~p~~-------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~ 118 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRYPFS-------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY 118 (235)
T ss_pred cCCHHHHHHHHHHHHHhCCCc-------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH
Confidence 499999999999999998875 333568999999999999999999999999999998865 7999999999
Q ss_pred Hh--------hcHHHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 224 QI--------HQYAEAVRDCLKSIDIDPNYSKAY-----------------SRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 224 ~~--------~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
.. |++++|+..+++++..+|++..++ ..+|.++...|++.+|+. .+++++...|
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~-~~~~al~~~p 197 (235)
T TIGR03302 119 NQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN-RFETVVENYP 197 (235)
T ss_pred HhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH-HHHHHHHHCC
Confidence 87 899999999999999999986543 467889999999999999 9999999977
Q ss_pred CC---HHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 279 NN---EAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 279 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
+. +.++..++.++..+|++++|..+.+...
T Consensus 198 ~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 198 DTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 5899999999999999999988766443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.4e-13 Score=132.75 Aligned_cols=281 Identities=10% Similarity=0.034 Sum_probs=185.2
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCCCC
Q 013948 36 EGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPDS 115 (433)
Q Consensus 36 ~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 115 (433)
+++++|.+.+.++|..||.++.+|...+.+++..+...+.....+.+- .++
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--------------------HL~--------- 203 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--------------------HLN--------- 203 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--------------------hcC---------
Confidence 669999999999999999999777766666666665566555221100 110
Q ss_pred CCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHH
Q 013948 116 TGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYS 195 (433)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 195 (433)
.... +++..+.....+ +|.+++|+-+|.+||+..|.+ ....+..+.+|.+.|+..
T Consensus 204 -p~d~-e~W~~ladls~~-------------~~~i~qA~~cy~rAI~~~p~n----------~~~~~ers~L~~~~G~~~ 258 (895)
T KOG2076|consen 204 -PKDY-ELWKRLADLSEQ-------------LGNINQARYCYSRAIQANPSN----------WELIYERSSLYQKTGDLK 258 (895)
T ss_pred -CCCh-HHHHHHHHHHHh-------------cccHHHHHHHHHHHHhcCCcc----------hHHHHHHHHHHHHhChHH
Confidence 1111 333344433333 789999999999999999988 778888999999999999
Q ss_pred HHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHhhcHHHHHHHHHHHHhcC--CCcHHH--------------------
Q 013948 196 DAIELYSFAIALCGNNA-----VYYSNRAAAYTQIHQYAEAVRDCLKSIDID--PNYSKA-------------------- 248 (433)
Q Consensus 196 ~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~-------------------- 248 (433)
.|++.|.+++..+|... ......+..+...++-+.|++.+..++... -....-
T Consensus 259 ~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~ 338 (895)
T KOG2076|consen 259 RAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMK 338 (895)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHH
Confidence 99999999999999321 122233444455555555555555555411 001111
Q ss_pred -------------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhhCC-CCHHHH
Q 013948 249 -------------------------------------------YSRLGLAYYAQGNYNDAIEKGFKKALQLDP-NNEAVK 284 (433)
Q Consensus 249 -------------------------------------------~~~lg~~~~~~g~~~~A~~~~~~~al~~~p-~~~~~~ 284 (433)
+..++.+..+.++..+++. .+..--...| +++..+
T Consensus 339 i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll-~~l~~~n~~~~d~~dL~ 417 (895)
T KOG2076|consen 339 IVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALL-HFLVEDNVWVSDDVDLY 417 (895)
T ss_pred HHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHH-HHHHHhcCChhhhHHHH
Confidence 2223333333333333333 2221111112 346677
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCCcc-chh------hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhc
Q 013948 285 ENIRMAEQKLREERQRTGWDQTTSSSHY-SQE------SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASN 355 (433)
Q Consensus 285 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~------~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~ 355 (433)
..++.++...|++..|..++......+. ... +..|+..|.++.|++.| ++..+| ++..+...++ .
T Consensus 418 ~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-----~~~D~Ri~La-s 491 (895)
T KOG2076|consen 418 LDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-----DNLDARITLA-S 491 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CchhhhhhHH-H
Confidence 7888888888888888777665553322 221 44566668888888888 999999 9999999999 9
Q ss_pred ccccCCChhhHHHHHhhhcCCC
Q 013948 356 MPQAQPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 356 ~~~~~g~~~~A~~~~~~al~l~ 377 (433)
++..+|+.++|.+.......-|
T Consensus 492 l~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 492 LYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHhcCCHHHHHHHHhcccCCC
Confidence 9999999999999998877444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=134.14 Aligned_cols=198 Identities=20% Similarity=0.224 Sum_probs=162.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--------CCHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG--------NNAVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l 218 (433)
.+++++|+.+|++++++.... .+..++..+.++.+||..|...|+|++|..++++|+++.. .-...+.++
T Consensus 254 ~~k~~eAv~ly~~AL~i~e~~--~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 254 LGKYDEAVNLYEEALTIREEV--FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 789999999999999987643 2334677799999999999999999999999999998742 235678999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--------CCCHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDID--------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD--------PNNEA 282 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~--------p~~~~ 282 (433)
+.++..++++++|..++++++++- |.-+..+.+||.+|+.+|+|++|.+ .|++|+.+. +....
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~-~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE-LYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH-HHHHHHHHHHhcccCcChhhhH
Confidence 999999999999999999999872 2346889999999999999999999 999999764 23355
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccC
Q 013948 283 VKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQ 360 (433)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~ 360 (433)
....++..+..++++.+|...+.... ... .-...| +....+.+|+ .+|..+
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~---------------------~i~~~~g~~~~-----~~~~~~~nL~-~~Y~~~ 463 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAK---------------------DIMKLCGPDHP-----DVTYTYLNLA-ALYRAQ 463 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHH---------------------HHHHHhCCCCC-----chHHHHHHHH-HHHHHc
Confidence 77888888888888877766655222 111 223456 8888999999 999999
Q ss_pred CChhhHHHHHhhhc
Q 013948 361 PSQSRQGEDSNVSG 374 (433)
Q Consensus 361 g~~~~A~~~~~~al 374 (433)
|++++|++.-.+++
T Consensus 464 g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 464 GNYEAAEELEEKVL 477 (508)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999888876
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-14 Score=138.52 Aligned_cols=193 Identities=15% Similarity=0.061 Sum_probs=133.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
++..++|+.+++++|+.+|.. ...|..+|+++.++++.+.|.+.|...++.+|++..+|..++.+-.+.|
T Consensus 664 ld~~eeA~rllEe~lk~fp~f----------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDF----------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCch----------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 466777777777777776665 6677777777777777777777777777777777777777777777777
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
+...|...++++...+|.+...|+..-.+-.+.|+.++|.. ...+||+-.|++...|..--...-.-++..
T Consensus 734 ~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~-lmakALQecp~sg~LWaEaI~le~~~~rkT-------- 804 (913)
T KOG0495|consen 734 QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAEL-LMAKALQECPSSGLLWAEAIWLEPRPQRKT-------- 804 (913)
T ss_pred chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCccchhHHHHHHhccCcccch--------
Confidence 77777777777777777777777777777777777777777 777777777776665544322211111100
Q ss_pred cCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccc
Q 013948 307 TSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGN 385 (433)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~ 385 (433)
.++. |+.... .++++....| .++....++++|.++|.+++..+|++ .++..
T Consensus 805 --------------------ks~D--ALkkce-----~dphVllaia-~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~ 856 (913)
T KOG0495|consen 805 --------------------KSID--ALKKCE-----HDPHVLLAIA-KLFWSEKKIEKAREWFERAVKKDPDNGDAWAW 856 (913)
T ss_pred --------------------HHHH--HHHhcc-----CCchhHHHHH-HHHHHHHHHHHHHHHHHHHHccCCccchHHHH
Confidence 0111 455555 6668899999 89999999999999999999999999 54444
Q ss_pred c
Q 013948 386 I 386 (433)
Q Consensus 386 ~ 386 (433)
+
T Consensus 857 f 857 (913)
T KOG0495|consen 857 F 857 (913)
T ss_pred H
Confidence 3
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-13 Score=134.20 Aligned_cols=218 Identities=8% Similarity=0.034 Sum_probs=172.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKC-QGNRVMQSQQYSDAIELYSFAIALCGNNAVY-YSNRAAAYTQ 224 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~ 224 (433)
.|+|++|.+...++-...+. +..++. .+......|+++.|..+|.++.+.+|+.... ....+.++..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-----------p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-----------PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 48999998666554332111 333344 4666699999999999999999999988543 3445899999
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh----------------------------
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL---------------------------- 276 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~---------------------------- 276 (433)
.|++++|+..++++++.+|+++.++..++.+|...|+|++|+. .+.+..+.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~-~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD-ILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999996 55544432
Q ss_pred --------------CCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh-hhhh--hcCCCCCCCCCcc--cccCC
Q 013948 277 --------------DPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQE-SNQS--TGGFRSHGTPPSF--TMPFN 337 (433)
Q Consensus 277 --------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~--~~~~~~~~A~~~~--al~~~ 337 (433)
.|+++.+...++..+...|+.++|..........+.+.. ...| ...+++++++... .++.+
T Consensus 245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC
Confidence 234566677777788888888888887766654333332 2233 3448888888888 88899
Q ss_pred CCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCccc
Q 013948 338 TNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGIRI 382 (433)
Q Consensus 338 p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 382 (433)
| +++..+..+| .++...|++++|.+.|+++++.+|++..
T Consensus 325 P-----~~~~l~l~lg-rl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 325 G-----DTPLLWSTLG-QLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred C-----CCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 9 9999999999 9999999999999999999999999844
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.2e-13 Score=130.56 Aligned_cols=218 Identities=6% Similarity=-0.023 Sum_probs=158.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+++.|..++.++.+..|.+. ..+....+.++...|++++|+..+++.++..|+++.++..++.++...|
T Consensus 131 ~g~~~~A~~~l~~a~~~~p~~~---------l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~ 201 (409)
T TIGR00540 131 RGDEARANQHLEEAAELAGNDN---------ILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSG 201 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCcCc---------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 4788888888888887776641 2344455788888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYS----RLGLAYYAQGNYNDAIEKGFKKALQLDP----NNEAVKENIRMAEQKLREER 298 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~----~lg~~~~~~g~~~~A~~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~~ 298 (433)
++++|+..+.+.++....++.... ....-+...+..+++.. .+.++.+..| +++.++..++..+...|+++
T Consensus 202 d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~-~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 202 AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGID-GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence 888888888888877544433221 22222244455555666 6777777666 47888888888888888888
Q ss_pred HhcccccccCC-Cccchh-------hhhhhcCCCCCCCCCcc--cccCCCCCCCccHH--HHHHHHhhcccccCCChhhH
Q 013948 299 QRTGWDQTTSS-SHYSQE-------SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIA--SMLMNMASNMPQAQPSQSRQ 366 (433)
Q Consensus 299 ~a~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~--~a~~~la~~~~~~~g~~~~A 366 (433)
+|......... .|.+.. .......++.+.++..+ +++.+| +++ .....+| .++..+|++++|
T Consensus 281 ~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p-----~~~~~~ll~sLg-~l~~~~~~~~~A 354 (409)
T TIGR00540 281 SAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD-----DKPKCCINRALG-QLLMKHGEFIEA 354 (409)
T ss_pred HHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC-----CChhHHHHHHHH-HHHHHcccHHHH
Confidence 88887666653 333221 11123335555666666 888999 999 8888999 999999999999
Q ss_pred HHHHh--hhcCCCCCc
Q 013948 367 GEDSN--VSGSDEPGI 380 (433)
Q Consensus 367 ~~~~~--~al~l~P~~ 380 (433)
.++|+ ++++.+|+.
T Consensus 355 ~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 355 ADAFKNVAACKEQLDA 370 (409)
T ss_pred HHHHHHhHHhhcCCCH
Confidence 99999 688899988
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-13 Score=137.83 Aligned_cols=225 Identities=13% Similarity=0.019 Sum_probs=156.1
Q ss_pred cCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 013948 139 TMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR 218 (433)
Q Consensus 139 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 218 (433)
..+..+.+.+++..|+..|+.+++.+|++ ...|..+|.+|...|+|..|++.|.+|..++|.+.-..|..
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dPkD----------~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~ 636 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDPKD----------YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKE 636 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCchh----------HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHH
Confidence 35666667899999999999999999988 89999999999999999999999999999999999888889
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-------C-------
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDIDPNY-------SKAYSRLGLAYYAQGNYNDAIEKGFKKALQL-------D------- 277 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~-------~------- 277 (433)
+.+....|.|.+|+..+...+...... .+.+.+++..+.-.|=+.+|.. .++++++. .
T Consensus 637 A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd-~~eksie~f~~~l~h~~~~~~~~ 715 (1238)
T KOG1127|consen 637 AVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVD-FFEKSIESFIVSLIHSLQSDRLQ 715 (1238)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999999998888777654332 2233333332222332222222 22221110 0
Q ss_pred -------------------------------------CC-------------------CHHHHHHHHHHHHH--------
Q 013948 278 -------------------------------------PN-------------------NEAVKENIRMAEQK-------- 293 (433)
Q Consensus 278 -------------------------------------p~-------------------~~~~~~~l~~~~~~-------- 293 (433)
|+ ++..|++||..+..
T Consensus 716 Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 716 WIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred HHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCc
Confidence 00 13457777777655
Q ss_pred HHHHHHhcccccccCCCccchhhhh-----hhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhH
Q 013948 294 LREERQRTGWDQTTSSSHYSQESNQ-----STGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQ 366 (433)
Q Consensus 294 ~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A 366 (433)
+.+...|+.+..++.....+....| ...-|++..|...| .+..+| .....|.|+| .+.....+++.|
T Consensus 796 ~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep-----~~~~~W~Nlg-vL~l~n~d~E~A 869 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEP-----TCHCQWLNLG-VLVLENQDFEHA 869 (1238)
T ss_pred chhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccc-----cchhheeccc-eeEEecccHHHh
Confidence 1223355565555543333332222 22337777777777 777888 8888888888 888888888888
Q ss_pred HHHHhhhcCCCCCc
Q 013948 367 GEDSNVSGSDEPGI 380 (433)
Q Consensus 367 ~~~~~~al~l~P~~ 380 (433)
...+.++..++|.+
T Consensus 870 ~~af~~~qSLdP~n 883 (1238)
T KOG1127|consen 870 EPAFSSVQSLDPLN 883 (1238)
T ss_pred hHHHHhhhhcCchh
Confidence 88888888888887
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.3e-13 Score=140.18 Aligned_cols=217 Identities=12% Similarity=0.070 Sum_probs=150.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+.++|+.++++++.-.|.. ......+|.++...|+|++|++.|+++++.+|+++.++..++.++...+
T Consensus 81 ~G~~~~A~~~~eka~~p~n~~----------~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 81 AGRDQEVIDVYERYQSSMNIS----------SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAG 150 (822)
T ss_pred cCCcHHHHHHHHHhccCCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC
Confidence 477888888888888322222 4455555778888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
+.++|+..+++++..+|.+... ..++.++...+++.+|+. .++++++.+|++..++..+..+....|-...|......
T Consensus 151 q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~-~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 151 RGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQ-ASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred CHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 8888888888888888886554 556666666777777888 88888888888888877777776666544333322111
Q ss_pred cC----------------------------------------------------CCccchh---------hhhhhcCCCC
Q 013948 307 TS----------------------------------------------------SSHYSQE---------SNQSTGGFRS 325 (433)
Q Consensus 307 ~~----------------------------------------------------~~~~~~~---------~~~~~~~~~~ 325 (433)
-. ..|.... .......+++
T Consensus 229 ~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~ 308 (822)
T PRK14574 229 NPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQT 308 (822)
T ss_pred CccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhH
Confidence 00 0010000 0112333788
Q ss_pred CCCCCcc-cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 326 HGTPPSF-TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 326 ~~A~~~~-al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
.+++..| +|...+...| .. +....| ..|..+++.++|+..|+.++.-+|+
T Consensus 309 ~~vi~~y~~l~~~~~~~P-~y--~~~a~a-dayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 309 ADLIKEYEAMEAEGYKMP-DY--ARRWAA-SAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred HHHHHHHHHhhhcCCCCC-HH--HHHHHH-HHHHhcCCcHHHHHHHHHHhhcccc
Confidence 8888888 7776553333 32 444556 6788889999999999988887753
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=124.39 Aligned_cols=198 Identities=15% Similarity=0.154 Sum_probs=163.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 255 (433)
....-++.+|..++..|++..|+..|..|++.+|++..+++.+|.+|+.+|+-..|+..+.++|++.|+...+....|.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHhccc------------ccccC-CCccch-----
Q 013948 256 YYAQGNYNDAIEKGFKKALQLDPNNE---AVKENIRMAEQKLREERQRTGW------------DQTTS-SSHYSQ----- 314 (433)
Q Consensus 256 ~~~~g~~~~A~~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~------------~~~~~-~~~~~~----- 314 (433)
+.++|++++|.. .|.++|+.+|++. ++...++.+........+...+ ..... ..+-+.
T Consensus 116 llK~Gele~A~~-DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEA-DFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHH-HHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 999999999999 9999999999653 4444455444333333332222 22111 111111
Q ss_pred hhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 315 ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 315 ~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.+..|...|....|+..+ +-.+.. ++.+.++.++ .++...|+.+.++...+..|++||+.
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~-----DnTe~~ykis-~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQ-----DNTEGHYKIS-QLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccc-----cchHHHHHHH-HHHHhhhhHHHHHHHHHHHHccCcch
Confidence 134466669999999998 778888 9999999999 99999999999999999999999995
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.7e-13 Score=109.23 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
..+..+.+|..++..|++++|...|+..+.++|.++..|++||.|+..+|+|.+|+..|.+++.++|+++.+++++|.|+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 257 YAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 257 ~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
+..|+.+.|.. .|+.++......+
T Consensus 114 L~lG~~~~A~~-aF~~Ai~~~~~~~ 137 (157)
T PRK15363 114 LACDNVCYAIK-ALKAVVRICGEVS 137 (157)
T ss_pred HHcCCHHHHHH-HHHHHHHHhccCh
Confidence 99999999999 9999999874443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-12 Score=128.04 Aligned_cols=210 Identities=6% Similarity=-0.071 Sum_probs=122.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHH--------HH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYS--------NR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------~l 218 (433)
.|++++|+..+++.++..|++ ..++..++.++...|++++|++.+.+..+..+.+..... .+
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~----------~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRH----------PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 589999999999999999988 889999999999999999999777777655443322111 11
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 298 (433)
........+-+.....++..-+..|+++.++..+|..+...|+.++|.. .++++++ .|.++.....++.+.. ++.+
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~-~L~~~l~-~~~~~~l~~l~~~l~~--~~~~ 311 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ-IILDGLK-RQYDERLVLLIPRLKT--NNPE 311 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHh-cCCCHHHHHHHhhccC--CChH
Confidence 1111111112222222222222334455555555555555555555555 5555555 2223333332232211 3333
Q ss_pred HhcccccccC-CCccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHH
Q 013948 299 QRTGWDQTTS-SSHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDS 370 (433)
Q Consensus 299 ~a~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~ 370 (433)
++....+... ..|.+.. +..+...+++++|...| ++...| +... +..++ .++..+|+.++|..+|
T Consensus 312 ~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-----~~~~-~~~La-~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 312 QLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-----DAYD-YAWLA-DALDRLHKPEEAAAMR 384 (398)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----CHHH-HHHHH-HHHHHcCCHHHHHHHH
Confidence 3333333222 1122111 34444555555555555 777888 7644 55688 8899999999999999
Q ss_pred hhhcCCC
Q 013948 371 NVSGSDE 377 (433)
Q Consensus 371 ~~al~l~ 377 (433)
++++.+.
T Consensus 385 ~~~l~~~ 391 (398)
T PRK10747 385 RDGLMLT 391 (398)
T ss_pred HHHHhhh
Confidence 9998764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-13 Score=132.18 Aligned_cols=250 Identities=13% Similarity=0.101 Sum_probs=202.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.++|.+.++..+..|..+|.+ .+.+..+|..+...|+-++|......++..++.+..+|.-+|.++...+
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eH----------geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEH----------GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCcc----------chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 489999999999999999988 7899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
+|++|+.+|+.|+.++|+|...|..++....++++++.... .-.+.+++.|.....|...+.++...|++..|......
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~-tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE-TRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999988776433
Q ss_pred cCC----Cccch--h--------hhhhhcCCCCCCCCCcc-cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHh
Q 013948 307 TSS----SHYSQ--E--------SNQSTGGFRSHGTPPSF-TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSN 371 (433)
Q Consensus 307 ~~~----~~~~~--~--------~~~~~~~~~~~~A~~~~-al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~ 371 (433)
... .+... + .......|.+++|++.+ -.+-.- .+........| .++..+|+.++|...|+
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i----~Dkla~~e~ka-~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI----VDKLAFEETKA-DLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH----HHHHHHhhhHH-HHHHHHhhHHhHHHHHH
Confidence 221 11111 1 23345558888888776 333333 23344455667 89999999999999999
Q ss_pred hhcCCCCCc-ccccccccccc--cCCcHHHHHHHHHHHhhcCCC
Q 013948 372 VSGSDEPGI-RIGGNINLNFG--ENMPEDITGALRSMMEMFSGP 412 (433)
Q Consensus 372 ~al~l~P~~-~~~~~~~~~l~--~~~~~~~~~a~~~~~~~~~~~ 412 (433)
..+..+|++ ...-.+...++ ..+.+.+...+....+.+.++
T Consensus 244 ~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 244 RLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred HHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 999999999 44444433332 344444444555555555444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-12 Score=124.47 Aligned_cols=215 Identities=13% Similarity=0.088 Sum_probs=186.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.||...|..++.++++.+|++ .+.|+..-.+.+...+++.|..+|.++....| ...+|+..+.....++
T Consensus 597 agdv~~ar~il~~af~~~pns----------eeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNS----------EEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLD 665 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCc----------HHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhh
Confidence 589999999999999999987 88899888889999999999999999998766 5688889999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
+.++|+..++.+++..|+++..|+.+|+++.++++.+.|.. .|...++..|+.+..|..|+.+-.+.|...+|......
T Consensus 666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~-aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMARE-AYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHH-HHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999998888887766
Q ss_pred cC-CCccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 307 TS-SSHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 307 ~~-~~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
.. ..|.+.. ...-.+.|..+.|.... |+...| .....|..-. .+...-++...++..+++. +-||
T Consensus 745 arlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp-----~sg~LWaEaI-~le~~~~rkTks~DALkkc-e~dp 817 (913)
T KOG0495|consen 745 ARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECP-----SSGLLWAEAI-WLEPRPQRKTKSIDALKKC-EHDP 817 (913)
T ss_pred HHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----ccchhHHHHH-HhccCcccchHHHHHHHhc-cCCc
Confidence 65 3444332 33456668888888888 999999 8888887766 6666667778888888887 7788
Q ss_pred Cc
Q 013948 379 GI 380 (433)
Q Consensus 379 ~~ 380 (433)
.-
T Consensus 818 hV 819 (913)
T KOG0495|consen 818 HV 819 (913)
T ss_pred hh
Confidence 76
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.1e-13 Score=127.56 Aligned_cols=117 Identities=31% Similarity=0.489 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ 259 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 259 (433)
-+...|..++..|+|++|+.+|.+++.++|+++.+|+++|.++..+|++++|+..+++++.++|+++.+++.+|.+++.+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 36677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013948 260 GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297 (433)
Q Consensus 260 g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 297 (433)
|+|++|+. +|+++++++|+++.+...++.|...+...
T Consensus 84 g~~~eA~~-~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 84 EEYQTAKA-ALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred CCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999 99999999999999999999998877543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.6e-13 Score=124.77 Aligned_cols=201 Identities=13% Similarity=0.072 Sum_probs=179.5
Q ss_pred CCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 013948 145 DDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ 224 (433)
Q Consensus 145 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 224 (433)
...|++++|.+.|+++|..+... .++++++|..+...|+.++|+++|-+...+--+++.+++.++.+|..
T Consensus 501 f~ngd~dka~~~ykeal~ndasc----------~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASC----------TEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL 570 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHH----------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34699999999999999987665 89999999999999999999999999888888899999999999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
+.+..+|++++.++.++-|++|.++..||.+|-+.|+-.+|.+ ++-......|-+.+...+|+.-|....-+++++.++
T Consensus 571 led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq-~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQ-CHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhh-hhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999998
Q ss_pred cccCC-Cccch-h----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCC
Q 013948 305 QTTSS-SHYSQ-E----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPS 362 (433)
Q Consensus 305 ~~~~~-~~~~~-~----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~ 362 (433)
+++.. .|... + +..+.+.|+|.+|+..| .-...| ++..++.-+. ++-..+|-
T Consensus 650 ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp-----edldclkflv-ri~~dlgl 709 (840)
T KOG2003|consen 650 EKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP-----EDLDCLKFLV-RIAGDLGL 709 (840)
T ss_pred HHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc-----cchHHHHHHH-HHhccccc
Confidence 87763 33322 2 45677889999999999 666788 8888887777 66666665
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.2e-13 Score=119.91 Aligned_cols=233 Identities=11% Similarity=-0.018 Sum_probs=187.8
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
.|..+|-..++..+...-....-....-...+-...+|.||++.|-+.+|.+.++.+++..| .++.+..++.+|....+
T Consensus 193 nDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQ 271 (478)
T KOG1129|consen 193 NDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQ 271 (478)
T ss_pred hhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhcc
Confidence 56666666666655543221000000011122234599999999999999999999999876 77888899999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
+..|+..+...+...|.+.......+.++..++++++|.+ .|+.+++.+|.+.++.-.++..|..-++.+-|..+++..
T Consensus 272 P~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~-lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 272 PERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQ-LYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred HHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHH-HHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999998876
Q ss_pred CCCcc------chhhhhhhcCCCCCCCCCcc--ccc--CCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCC
Q 013948 308 SSSHY------SQESNQSTGGFRSHGTPPSF--TMP--FNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 308 ~~~~~------~~~~~~~~~~~~~~~A~~~~--al~--~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~ 377 (433)
..... ...+...+-+++++-++..| |+. .+| ..-+.+|+++| .+....|++.-|..+|+-++..|
T Consensus 351 LqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~----~~aaDvWYNlg-~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 351 LQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP----GQAADVWYNLG-FVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc----chhhhhhhccc-eeEEeccchHHHHHHHHHHhccC
Confidence 53222 22244566679999999999 443 334 37788999999 99999999999999999999999
Q ss_pred CCc-ccccccc
Q 013948 378 PGI-RIGGNIN 387 (433)
Q Consensus 378 P~~-~~~~~~~ 387 (433)
|+. ....|+.
T Consensus 426 ~~h~ealnNLa 436 (478)
T KOG1129|consen 426 AQHGEALNNLA 436 (478)
T ss_pred cchHHHHHhHH
Confidence 999 5555544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.4e-13 Score=116.30 Aligned_cols=117 Identities=16% Similarity=0.128 Sum_probs=110.6
Q ss_pred ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCC--HHHHHH
Q 013948 191 SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY-YAQGN--YNDAIE 267 (433)
Q Consensus 191 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~~A~~ 267 (433)
.++.++++..+++++..+|++...|+.+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999999985 67787 599999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 268 KGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
.++++++++|+++.++..+|.++...|++++|+.+++++.
T Consensus 132 -~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 132 -MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred -HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-12 Score=131.34 Aligned_cols=130 Identities=5% Similarity=-0.076 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+.+++.||.+....|.+++|...+.+++++.|++..++.+++.++.+.+++++|+..+++++..+|+++.+++.+|.++.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
++|+|++|+. .|++++..+|+++.++.++|.++...|+.++|...++++.
T Consensus 166 ~~g~~~~A~~-~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 166 EIGQSEQADA-CFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HhcchHHHHH-HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999 9999998888889999999999999999888888877664
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.5e-12 Score=110.07 Aligned_cols=149 Identities=17% Similarity=0.262 Sum_probs=136.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+-+.+..+..++...+|.+ ...+..+|...+..|+|..|+..++++..+.|++..+|..+|.+|.+.|
T Consensus 79 ~G~a~~~l~~~~~~~~~~~~d----------~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 79 RGDADSSLAVLQKSAIAYPKD----------RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred cccccchHHHHhhhhccCccc----------HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 366667777777777776765 6677779999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|...|.+++++.|+.+.+..++|..+.-.|+++.|.. .+..+....+.+..+..+++.+....|+...|......
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~-lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET-LLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHH-HHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999999999999999999999999999999999999999 99999998889999999999999999999998887653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-13 Score=125.33 Aligned_cols=222 Identities=12% Similarity=0.038 Sum_probs=181.2
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
....|..|+..+..||++.|.+ +..|...+-+++..++|++|.-..++.++++|..+..+...+.|+..+
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~----------a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDN----------ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccc----------hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 3689999999999999999988 888999999999999999999999999999999988888888888888
Q ss_pred hcHHHHHHHHHHHH------------hc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013948 226 HQYAEAVRDCLKSI------------DI------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENI 287 (433)
Q Consensus 226 ~~~~~A~~~~~~al------------~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l 287 (433)
++..+|...++..- .+ .|....+-+..+.|+..+|++++|.. .--..+++++.+..++...
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~-ea~~ilkld~~n~~al~vr 209 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS-EAIDILKLDATNAEALYVR 209 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH-HHHHHHhcccchhHHHHhc
Confidence 87777765554111 01 13445666667888888888888888 8888888888888888888
Q ss_pred HHHHHHHHHHHHhcccccccCC-Cccchh-----------------hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHH
Q 013948 288 RMAEQKLREERQRTGWDQTTSS-SHYSQE-----------------SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIAS 347 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~-----------------~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~ 347 (433)
|.++....+.+.+..+++++.. .|.... ++.....|+|.+|.+.| +|.++|. ....++.
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-n~~~nak 288 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-NKKTNAK 288 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc-ccchhHH
Confidence 8888888888888887777663 333222 23345569999999999 9999995 3447888
Q ss_pred HHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 348 MLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 348 a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.|++++ .+...+|+..+|+.+...++++||..
T Consensus 289 lY~nra-~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 289 LYGNRA-LVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred HHHHhH-hhhcccCCchhhhhhhhhhhhcCHHH
Confidence 999999 99999999999999999999999998
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.1e-12 Score=113.10 Aligned_cols=215 Identities=11% Similarity=0.034 Sum_probs=149.5
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-----AVYYSNRAAAY 222 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 222 (433)
.+.++|++.|...++.+|.. .+++..+|+.+...|+.+.||..-+..+ ..|+- ..+.+.||.=|
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t----------~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPET----------FEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred cCcchHHHHHHHHHhcCchh----------hHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHH
Confidence 57889999999999987776 8999999999999999999999877655 45654 45788999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN-----EAVKENIRMAEQKLREE 297 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~ 297 (433)
+..|-++.|...|........--..+.-.|-.+|....+|++|+. ..++..++.|.. ...+..|+..+....+.
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId-~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAID-VAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999888766667889999999999999999999 999999988764 34556666666666666
Q ss_pred HHhcccccccC-CCccch-----hhhhhhcCCCCCCCCCcc--cccCCCCCCCccH-HHHHHHHhhcccccCCChhhHHH
Q 013948 298 RQRTGWDQTTS-SSHYSQ-----ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDI-ASMLMNMASNMPQAQPSQSRQGE 368 (433)
Q Consensus 298 ~~a~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~-~~a~~~la~~~~~~~g~~~~A~~ 368 (433)
++|..+..++. ..+.+. .+.+++..|+|++|++.+ +++.|| +. +++.-.+. .+|..+|+.++.+.
T Consensus 197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~-----~yl~evl~~L~-~~Y~~lg~~~~~~~ 270 (389)
T COG2956 197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNP-----EYLSEVLEMLY-ECYAQLGKPAEGLN 270 (389)
T ss_pred HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhCh-----HHHHHHHHHHH-HHHHHhCCHHHHHH
Confidence 66666655432 111111 133344445555555544 444444 22 22333333 44555555555555
Q ss_pred HHhhhcCCCCCc
Q 013948 369 DSNVSGSDEPGI 380 (433)
Q Consensus 369 ~~~~al~l~P~~ 380 (433)
...++.+..++.
T Consensus 271 fL~~~~~~~~g~ 282 (389)
T COG2956 271 FLRRAMETNTGA 282 (389)
T ss_pred HHHHHHHccCCc
Confidence 555554444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-12 Score=126.62 Aligned_cols=203 Identities=16% Similarity=0.181 Sum_probs=162.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cCCCHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL--------CGNNAVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l 218 (433)
.|+|++|+..++.+++.-.+... ...+........+|..|...++|.+|+..|++|+.+ +|.-+.++.+|
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G--~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nL 289 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSG--LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNL 289 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccC--ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 69999999999999998432211 233445677778999999999999999999999987 34446789999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--------CCCHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDID--------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD--------PNNEA 282 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~--------p~~~~ 282 (433)
|.+|...|++++|..++++|+++. |+-...+..++.++...+++++|+. ++++++++- |.-+.
T Consensus 290 a~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~-l~q~al~i~~~~~g~~~~~~a~ 368 (508)
T KOG1840|consen 290 AVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK-LLQKALKIYLDAPGEDNVNLAK 368 (508)
T ss_pred HHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH-HHHHHHHHHHhhccccchHHHH
Confidence 999999999999999999999873 4456778889999999999999999 999998763 23466
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCC
Q 013948 283 VKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPS 362 (433)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~ 362 (433)
.+.+||.++..+|++.+|...++.+....... --..++ .....+.++| ..+.+.++
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~------------------~~~~~~-----~~~~~l~~la-~~~~~~k~ 424 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILREL------------------LGKKDY-----GVGKPLNQLA-EAYEELKK 424 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc------------------ccCcCh-----hhhHHHHHHH-HHHHHhcc
Confidence 88999999999999999999988443211100 112245 6667888999 88899999
Q ss_pred hhhHHHHHhhhcCC
Q 013948 363 QSRQGEDSNVSGSD 376 (433)
Q Consensus 363 ~~~A~~~~~~al~l 376 (433)
+.+|...|.++...
T Consensus 425 ~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDI 438 (508)
T ss_pred cchHHHHHHHHHHH
Confidence 99999988887655
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-11 Score=120.57 Aligned_cols=196 Identities=9% Similarity=0.028 Sum_probs=157.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+.+.+...+.++.+..|.+. ...+.....+.++...|++++|+..++++++.+|++..++.. +..+...|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~-------~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~ 90 (355)
T cd05804 19 GGERPAAAAKAAAAAQALAARA-------TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLG 90 (355)
T ss_pred cCCcchHHHHHHHHHHHhccCC-------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhc
Confidence 3677788888889888877652 235567788999999999999999999999999999988775 66666665
Q ss_pred cHHHHHHHHHHHH----hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 013948 227 QYAEAVRDCLKSI----DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTG 302 (433)
Q Consensus 227 ~~~~A~~~~~~al----~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 302 (433)
++..+.....+++ ..+|....++..+|.++...|++++|+. .++++++++|+++.++..++.++...|++++|..
T Consensus 91 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~-~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~ 169 (355)
T cd05804 91 DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEE-AARRALELNPDDAWAVHAVAHVLEMQGRFKEGIA 169 (355)
T ss_pred ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 5544444444444 5677788888899999999999999999 9999999999999999999999999999999998
Q ss_pred cccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 303 WDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
++.... ...|. .+......+..+| .++..+|++++|+..|++++...|.
T Consensus 170 ~l~~~l--------------------------~~~~~-~~~~~~~~~~~la-~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 170 FMESWR--------------------------DTWDC-SSMLRGHNWWHLA-LFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HHHhhh--------------------------hccCC-CcchhHHHHHHHH-HHHHHCCCHHHHHHHHHHHhccccC
Confidence 877432 23331 1113345677899 9999999999999999999888773
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.3e-12 Score=131.05 Aligned_cols=146 Identities=8% Similarity=-0.089 Sum_probs=135.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 202 SFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 202 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
.......|.++.++.+||.+....|++++|...++.++++.|++..++..++.++.+.+++++|+. .+++++..+|++.
T Consensus 76 ~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~-~~~~~l~~~p~~~ 154 (694)
T PRK15179 76 LDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRA-EIELYFSGGSSSA 154 (694)
T ss_pred HHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHH-HHHHHhhcCCCCH
Confidence 333445788999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCC
Q 013948 282 AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQP 361 (433)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g 361 (433)
.++..+|.++..+|++++|...+++ ++..+| +++.++..+| .++...|
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~--------------------------~~~~~p-----~~~~~~~~~a-~~l~~~G 202 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFER--------------------------LSRQHP-----EFENGYVGWA-QSLTRRG 202 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHH--------------------------HHhcCC-----CcHHHHHHHH-HHHHHcC
Confidence 9999999999999999999988774 344688 9999999999 9999999
Q ss_pred ChhhHHHHHhhhcCCCCCc
Q 013948 362 SQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 362 ~~~~A~~~~~~al~l~P~~ 380 (433)
+.++|...|+++++...+-
T Consensus 203 ~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 203 ALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred CHHHHHHHHHHHHHhhCcc
Confidence 9999999999999886553
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-11 Score=122.02 Aligned_cols=192 Identities=7% Similarity=-0.072 Sum_probs=141.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC----CCHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG----NNAVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~ 222 (433)
.|+|++|++.+.+.++....+ ..................+..+++.+.+.++....| +++.++..+|..+
T Consensus 200 ~~d~~~a~~~l~~l~k~~~~~------~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l 273 (409)
T TIGR00540 200 SGAWQALDDIIDNMAKAGLFD------DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHL 273 (409)
T ss_pred HhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHH
Confidence 588888888888887763222 111111222222223444555566677777777777 5888999999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNYSKAY--SRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE--AVKENIRMAEQKLREER 298 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~~~~~--~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~ 298 (433)
...|++++|+..++++++..|++.... ..........++.+.++. .++++++..|+++ .....+|.++...|+++
T Consensus 274 ~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~-~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~ 352 (409)
T TIGR00540 274 IDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEK-LIEKQAKNVDDKPKCCINRALGQLLMKHGEFI 352 (409)
T ss_pred HHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHH-HHHHHHHhCCCChhHHHHHHHHHHHHHcccHH
Confidence 999999999999999999999887532 333344445678888888 9999999999999 88889999999999999
Q ss_pred HhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 299 QRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 299 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
+|..+++.+. ++..+| +... +..+| .++..+|+.++|...|++++.+
T Consensus 353 ~A~~~le~a~------------------------a~~~~p-----~~~~-~~~La-~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 353 EAADAFKNVA------------------------ACKEQL-----DAND-LAMAA-DAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHhH------------------------HhhcCC-----CHHH-HHHHH-HHHHHcCCHHHHHHHHHHHHHH
Confidence 9988877311 355677 6655 45889 9999999999999999998653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-12 Score=119.55 Aligned_cols=224 Identities=13% Similarity=0.052 Sum_probs=172.1
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
-.|++.+|+..|+++.-++|.. ....-..|..+...|++++-.......+.+......-|+--+.+++..
T Consensus 244 ~~Gdn~~a~~~Fe~~~~~dpy~----------i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~ 313 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLCANPDN----------VEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDE 313 (564)
T ss_pred hhcCchHHHHHHHHHhhCChhh----------hhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhh
Confidence 3477777777777777776655 566666666666777776666666666666655666688888888999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
+++..|+.+-.++|..+|++..++...|.++..+|+.++|+- .|+.|..+.|.....+..|-.+|...|+..+|.....
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I-aFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI-AFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH-HHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999888766543
Q ss_pred ccCCCccchhhh-hhhc-------CCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcC
Q 013948 306 TTSSSHYSQESN-QSTG-------GFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGS 375 (433)
Q Consensus 306 ~~~~~~~~~~~~-~~~~-------~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~ 375 (433)
.+.......... .... ----++|...+ ++.++| ....+...+| .++...|++++++...++.+.
T Consensus 393 ~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P-----~Y~~AV~~~A-EL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 393 WTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP-----IYTPAVNLIA-ELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCC-----ccHHHHHHHH-HHHHhhCccchHHHHHHHHHh
Confidence 322211111100 0110 01123444445 899999 9999999999 999999999999999999999
Q ss_pred CCCCccccccc
Q 013948 376 DEPGIRIGGNI 386 (433)
Q Consensus 376 l~P~~~~~~~~ 386 (433)
..|+...+..+
T Consensus 467 ~~~D~~LH~~L 477 (564)
T KOG1174|consen 467 IFPDVNLHNHL 477 (564)
T ss_pred hccccHHHHHH
Confidence 99998444433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-12 Score=116.34 Aligned_cols=192 Identities=19% Similarity=0.253 Sum_probs=145.6
Q ss_pred HHHHHHHHhhhhCC---CCCCCchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCccc
Q 013948 16 IVRSFLHFLDSVEP---APGVDLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQ 92 (433)
Q Consensus 16 ~~~~~~~~l~~~~~---~~~~~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (433)
++..++.|++.... +.....+.++.|++|++.+|.+++++.+.-.. ..+..++......-.
T Consensus 6 ~~~~~~~~~~~~~~~~~~s~~~~esleva~qc~e~~f~~~~~~~~~~~~-~~~l~~~~~~~~~~~--------------- 69 (304)
T KOG0553|consen 6 LAAAIIQFLKQKSSFGWISEDGAESLEVAIQCLEAAFGFRRDDVDRAEG-TTLLDSFESAERHPV--------------- 69 (304)
T ss_pred HHHHHHHhHHHHhhcCCCCCcchhHHHHhHHHHHHHhCcchhhcccccc-ccHHHHHHHhccCcc---------------
Confidence 88888999987764 34447788999999999999999999854333 334444444433000
Q ss_pred CCCccchhhhcccCcccccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhcccccc
Q 013948 93 NMDAKFSEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAY 172 (433)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 172 (433)
... ...+ .......++..+......++|.+|+..|.+||.++|.+
T Consensus 70 -------------~~~----------~~~e-------~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n----- 114 (304)
T KOG0553|consen 70 -------------EIL----------TPEE-------DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN----- 114 (304)
T ss_pred -------------ccc----------ChHh-------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-----
Confidence 000 0000 00011111111111113589999999999999999998
Q ss_pred chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHH
Q 013948 173 NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL 252 (433)
Q Consensus 173 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 252 (433)
+-.|.+++.+|.+.|.++.|++.++.||.++|....+|..||.+|+.+|++++|++.|+++|.++|++...+.+|
T Consensus 115 -----AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 115 -----AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred -----chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHcCCHH
Q 013948 253 GLAYYAQGNYN 263 (433)
Q Consensus 253 g~~~~~~g~~~ 263 (433)
..+-..+++..
T Consensus 190 ~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 190 KIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhcCCC
Confidence 87777766655
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=107.70 Aligned_cols=175 Identities=14% Similarity=0.130 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHH
Q 013948 152 KASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEA 231 (433)
Q Consensus 152 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 231 (433)
.+...+-+....+|.+ ..+ ..++..++..|+-+.+..+..++...+|.+...+..+|......|+|.+|
T Consensus 51 ~a~~al~~~~~~~p~d----------~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A 119 (257)
T COG5010 51 GAAAALGAAVLRNPED----------LSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEA 119 (257)
T ss_pred HHHHHHHHHHhcCcch----------HHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHH
Confidence 3444455555555655 667 88899999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Q 013948 232 VRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSH 311 (433)
Q Consensus 232 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 311 (433)
+..++++..++|+++++|..+|.+|.+.|++++|.. .|.+++++.|+++.+..+++..+...|+.+.|......+.
T Consensus 120 ~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~-ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~--- 195 (257)
T COG5010 120 VSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARR-AYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY--- 195 (257)
T ss_pred HHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHH-HHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH---
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999988765322
Q ss_pred cchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHH
Q 013948 312 YSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDS 370 (433)
Q Consensus 312 ~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~ 370 (433)
..-+ .+..+..+++ .+...+|++++|...-
T Consensus 196 -----------------------l~~~-----ad~~v~~NLA-l~~~~~g~~~~A~~i~ 225 (257)
T COG5010 196 -----------------------LSPA-----ADSRVRQNLA-LVVGLQGDFREAEDIA 225 (257)
T ss_pred -----------------------hCCC-----CchHHHHHHH-HHHhhcCChHHHHhhc
Confidence 1223 5778888999 8899999999986654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=130.30 Aligned_cols=170 Identities=9% Similarity=0.010 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
.+...+..+.+.++.|+++.|+..|+++++.+|+++.....+..++...|++++|+.++++++.-.|........+|.++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 37889999999999999999999999999999999655448889999999999999999999943444555555558899
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccC
Q 013948 257 YAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPF 336 (433)
Q Consensus 257 ~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~ 336 (433)
...|+|++|++ .|+++++.+|+++.++..++.++...++.++|.....++. ..
T Consensus 113 ~~~gdyd~Aie-ly~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~--------------------------~~ 165 (822)
T PRK14574 113 RNEKRWDQALA-LWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA--------------------------ER 165 (822)
T ss_pred HHcCCHHHHHH-HHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc--------------------------cc
Confidence 99999999999 9999999999999999999999999999998888766533 34
Q ss_pred CCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 337 NTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 337 ~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+| +.... ..++ .++..+++..+|++.|+++++++|++
T Consensus 166 dp-----~~~~~-l~la-yL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 166 DP-----TVQNY-MTLS-YLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred Cc-----chHHH-HHHH-HHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 45 43332 3344 44444455545666666666666665
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.9e-12 Score=121.42 Aligned_cols=199 Identities=13% Similarity=0.067 Sum_probs=135.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH----HHHHH
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS----KAYSR 251 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~ 251 (433)
.....+..+|.++...|++++|+..++++++++|+++.++..+|.++...|++++|+.++++++...|..+ ..|..
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~ 191 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWH 191 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHH
Confidence 33677888999999999999999999999999999999999999999999999999999999999987543 35668
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHH-HH-HH---HHHHHHHH------HHHHhcccccccCCCc---cc--hh
Q 013948 252 LGLAYYAQGNYNDAIEKGFKKALQLDPNNEAV-KE-NI---RMAEQKLR------EERQRTGWDQTTSSSH---YS--QE 315 (433)
Q Consensus 252 lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~-~~-~l---~~~~~~~~------~~~~a~~~~~~~~~~~---~~--~~ 315 (433)
+|.++...|++++|+. .|++++...|..... .. .. ...+...| +++............. .. ..
T Consensus 192 la~~~~~~G~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 270 (355)
T cd05804 192 LALFYLERGDYEAALA-IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHA 270 (355)
T ss_pred HHHHHHHCCCHHHHHH-HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 9999999999999999 999998776622111 11 11 11111112 1211111111000000 00 01
Q ss_pred hhhhhcCCCCCCCCCcc-cccCCC-----CCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 316 SNQSTGGFRSHGTPPSF-TMPFNT-----NALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 316 ~~~~~~~~~~~~A~~~~-al~~~p-----~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
...+...|+.+.|...+ .+.... ..............+ .++...|++++|+..+..++.+
T Consensus 271 a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A-~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 271 ALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEA-LYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHH-HHHHHcCCHHHHHHHHHHHHHH
Confidence 33456668888877777 221111 001113455566677 7788999999999999988765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.7e-12 Score=103.71 Aligned_cols=108 Identities=18% Similarity=0.102 Sum_probs=103.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 199 ELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 199 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
+.|++++..+|++....+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+. +++++++.+|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAID-AYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCC
Confidence 468899999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 279 NNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
.++..+..+|.++...|++++|..+++.+
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLA 111 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999998887643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.32 E-value=6e-11 Score=95.74 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 251 (433)
+..++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+..|+.++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999877 5789999999999999999999999999998885 688999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013948 252 LGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286 (433)
Q Consensus 252 lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~ 286 (433)
+|.++...|++++|+. +++++++..|++..+...
T Consensus 82 ~~~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 82 LGMSLQELGDKEKAKA-TLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHhCChHHHHH-HHHHHHHHCcCChhHHHH
Confidence 9999999999999999 999999999998876543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.3e-10 Score=99.29 Aligned_cols=140 Identities=16% Similarity=0.181 Sum_probs=131.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+.+.|..++++.-+.+|.+ ..+....|..+...|++++|+++|+..+.-+|.+..++-..-.+...+|
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S----------~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGS----------KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQG 134 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCC----------hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcC
Confidence 588999999999999888887 7888889999999999999999999999999999999998888889999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 297 (433)
+..+|++.+..-++..+.++++|..++.+|...|+|++|.- |+++.+-+.|-++-....++.++.-+|..
T Consensus 135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~f-ClEE~ll~~P~n~l~f~rlae~~Yt~gg~ 204 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAF-CLEELLLIQPFNPLYFQRLAEVLYTQGGA 204 (289)
T ss_pred CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHH-HHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999888763
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.1e-10 Score=98.66 Aligned_cols=196 Identities=10% Similarity=-0.025 Sum_probs=165.3
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
.+.++-+++....+.-.+.. ...++....+-....+....|+..-|..++++.....|++...--..|..+...|+
T Consensus 26 rnseevv~l~~~~~~~~k~~----~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG----ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc----ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc
Confidence 35666777777766654432 01122233444455567788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
+++|+++|+..++-+|.+..++-+.-.+...+|+--+|++ .+...++..++|.++|..++.+|..+|++++|..+++.
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk-~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE- 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIK-ELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE- 179 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH-
Confidence 9999999999999999999999998888999999999999 99999999999999999999999999999999998774
Q ss_pred CCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCC---hhhHHHHHhhhcCCCCCc
Q 013948 308 SSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPS---QSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~---~~~A~~~~~~al~l~P~~ 380 (433)
.+-.+| .++..+..+| .++..+|- ++-|.++|.++++++|.+
T Consensus 180 -------------------------~ll~~P-----~n~l~f~rla-e~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 180 -------------------------LLLIQP-----FNPLYFQRLA-EVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred -------------------------HHHcCC-----CcHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 355678 8888888999 87777764 677899999999999965
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.8e-11 Score=109.58 Aligned_cols=122 Identities=33% Similarity=0.505 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---------------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID 242 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 242 (433)
+......|+.+++.|+|..|+..|++|+..-+.+ ..++.|++.|+.++++|.+|+..+.++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 6667788999999999999999999998764422 3579999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 013948 243 PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQR 300 (433)
Q Consensus 243 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 300 (433)
|+|..++|+.|.++..+|+|+.|+. .|+++++++|+|..+...|..+..+...+...
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~-df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARD-DFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 99999999999999999999999888876655
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.8e-11 Score=113.81 Aligned_cols=104 Identities=16% Similarity=0.176 Sum_probs=99.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+|++|+.+|+++|.++|.+ ..+++.+|.++...|++++|+..+++++.++|+++.+|+.+|.++..+|
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~----------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNN----------AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 489999999999999999988 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG 260 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 260 (433)
+|++|+..|+++++++|+++.+...++.|...+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988876663
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-11 Score=109.50 Aligned_cols=191 Identities=24% Similarity=0.262 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ 259 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 259 (433)
-....|+-|+++|+|++||++|.+++..+|.++..+.++|.+|+++++|..|...|..|+.++..+..+|.+.|.+-..+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH--HHHhc-ccccccC----CCccchhhhhhhcCCCCCCCCCcc
Q 013948 260 GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE--ERQRT-GWDQTTS----SSHYSQESNQSTGGFRSHGTPPSF 332 (433)
Q Consensus 260 g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--~~~a~-~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~ 332 (433)
|...+|.+ .++.+|.+.|++.+....++.+...... ..++. .+..+.. ..+....+..+...|.++-++..+
T Consensus 179 g~~~EAKk-D~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~ 257 (536)
T KOG4648|consen 179 GNNMEAKK-DCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDV 257 (536)
T ss_pred hhHHHHHH-hHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEe
Confidence 99999999 9999999999988877777666542221 11111 1111111 111112245566668888888887
Q ss_pred --ccc--CCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 333 --TMP--FNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 333 --al~--~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
-+. .+.+..+.+ + ..+.....++.++...-+++-++|..
T Consensus 258 ~~~~A~~~~~~~L~~~--------~-~~~~KI~~~~~~~~~~~~~~~~~~s~ 300 (536)
T KOG4648|consen 258 VSPRATIDDSNQLRIS--------D-EDIDKIFNSNCGIIEEVKKTNPKPTP 300 (536)
T ss_pred eccccccCccccCccc--------H-HHHHHHhhcchhHHHHHHhcCCCCCc
Confidence 222 222111111 1 22444456666776666777776665
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=88.66 Aligned_cols=99 Identities=43% Similarity=0.712 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ 259 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 259 (433)
+++.+|.+++..|++++|+..+.++++..|.+..+++.+|.++...+++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCC
Q 013948 260 GNYNDAIEKGFKKALQLDPN 279 (433)
Q Consensus 260 g~~~~A~~~~~~~al~~~p~ 279 (433)
|++++|.. ++.++++..|.
T Consensus 82 ~~~~~a~~-~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALE-AYEKALELDPN 100 (100)
T ss_pred HhHHHHHH-HHHHHHccCCC
Confidence 99999999 99999988873
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-10 Score=108.98 Aligned_cols=151 Identities=17% Similarity=0.114 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 255 (433)
....++|..+..++..|++++|+..++..+...|+++.++-..+.++.+.++..+|++.+++++.++|..+..++++|++
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 44778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCccccc
Q 013948 256 YYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMP 335 (433)
Q Consensus 256 ~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~ 335 (433)
+.+.|++.+|+. .++..+..+|+++..|..|+.+|..+|+..+
T Consensus 384 ll~~g~~~eai~-~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~------------------------------------ 426 (484)
T COG4783 384 LLKGGKPQEAIR-ILNRYLFNDPEDPNGWDLLAQAYAELGNRAE------------------------------------ 426 (484)
T ss_pred HHhcCChHHHHH-HHHHHhhcCCCCchHHHHHHHHHHHhCchHH------------------------------------
Confidence 999999999999 9999999999999999999999988876553
Q ss_pred CCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 336 FNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 336 ~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
+...++ ..+.-.|++++|+..+.++-+.
T Consensus 427 ------------a~~A~A-E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 427 ------------ALLARA-EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ------------HHHHHH-HHHHhCCCHHHHHHHHHHHHHh
Confidence 444556 6666678888888888777654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-10 Score=102.80 Aligned_cols=130 Identities=23% Similarity=0.284 Sum_probs=118.7
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh-
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH- 226 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~- 226 (433)
...+.-+.-++..|+.+|++ .+.|..||.+|+..|++..|...|.+|+++.|+++.++..+|.+++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d----------~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~ 205 (287)
T COG4235 136 QEMEALIARLETHLQQNPGD----------AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG 205 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCC----------chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 45778888899999999998 8999999999999999999999999999999999999999999988766
Q ss_pred --cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013948 227 --QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288 (433)
Q Consensus 227 --~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~ 288 (433)
...++...++++++++|.+..+.+.||..+++.|+|.+|+. .++..++..|.+..-...+-
T Consensus 206 ~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~-~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 206 QQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAA-AWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred CcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH-HHHHHHhcCCCCCchHHHHH
Confidence 46889999999999999999999999999999999999999 99999999987765444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-11 Score=100.09 Aligned_cols=104 Identities=13% Similarity=-0.003 Sum_probs=97.5
Q ss_pred HHHhc-CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 204 AIALC-GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 204 al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
...+. ++.-+..+.+|..++..|++++|...|+.+..++|.++..|++||.|+..+|+|++|+. .|.+++.++|+++.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~-aY~~A~~L~~ddp~ 104 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIY-AYGRAAQIKIDAPQ 104 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcCCCCch
Confidence 44566 77888999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccC
Q 013948 283 VKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
.++++|.|+..+|+.+.|...++.+.
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999988877543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-10 Score=98.21 Aligned_cols=106 Identities=22% Similarity=0.386 Sum_probs=95.8
Q ss_pred hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHH
Q 013948 174 QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYS 250 (433)
Q Consensus 174 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 250 (433)
.+..+..++.+|..+...|++++|+.+|++++...|+. ..+++++|.++...|++++|+..+.+++...|.+..++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34558889999999999999999999999999987764 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC--------------HHHHHHHHHHHHHhhCCCC
Q 013948 251 RLGLAYYAQGN--------------YNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 251 ~lg~~~~~~g~--------------~~~A~~~~~~~al~~~p~~ 280 (433)
.+|.++...|+ +++|+. ++++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~-~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAE-YWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHH-HHHHHHhhCchh
Confidence 99999999887 577888 888888888876
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.2e-11 Score=86.82 Aligned_cols=66 Identities=47% Similarity=0.739 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhCC
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG-NYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~~al~~~p 278 (433)
+..|..+|.++...|++++|+.+|.++++++|+++.+++++|.++..+| ++++|+. .++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~-~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIE-DFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHH-HHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHH-HHHHHHHcCc
Confidence 4455555555555555555555555555555555555555555555555 4555555 5555555554
|
... |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.7e-10 Score=115.97 Aligned_cols=234 Identities=12% Similarity=0.051 Sum_probs=170.6
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
..+++++|++..+.+++..|+....++..|.|+..-.....+.. +
T Consensus 43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~l---------------------------v-------- 87 (906)
T PRK14720 43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNL---------------------------L-------- 87 (906)
T ss_pred hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhh---------------------------h--------
Confidence 45679999999999999999999666655543333222221111 0
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC
Q 013948 114 DSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ 193 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 193 (433)
...+......++ .+++++...+...+.+ -.+++.+|.||-+.|+
T Consensus 88 -------------------------~~l~~~~~~~~~-~~ve~~~~~i~~~~~~----------k~Al~~LA~~Ydk~g~ 131 (906)
T PRK14720 88 -------------------------NLIDSFSQNLKW-AIVEHICDKILLYGEN----------KLALRTLAEAYAKLNE 131 (906)
T ss_pred -------------------------hhhhhcccccch-hHHHHHHHHHHhhhhh----------hHHHHHHHHHHHHcCC
Confidence 001111123466 6677777777667766 6799999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc--------------------CCCcHHH-----
Q 013948 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI--------------------DPNYSKA----- 248 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------------~p~~~~~----- 248 (433)
+++|...|+++++.+|+++.++.++|..|... +.++|+.++.+|+.. +|++...
T Consensus 132 ~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~ 210 (906)
T PRK14720 132 NKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIE 210 (906)
T ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHH
Confidence 99999999999999999999999999999999 999999999988765 3443222
Q ss_pred ---------------HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccc
Q 013948 249 ---------------YSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYS 313 (433)
Q Consensus 249 ---------------~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 313 (433)
+..+=.+|...++|++++. .++.+|+++|.|..+...++.||. +.|..
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~-iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-------------- 273 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY-ILKKILEHDNKNNKAREELIRFYK--EKYKD-------------- 273 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH-HHHHHHhcCCcchhhHHHHHHHHH--HHccC--------------
Confidence 2223377788888999999 999999999999999999988886 44431
Q ss_pred hhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-cccccc
Q 013948 314 QESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNI 386 (433)
Q Consensus 314 ~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~ 386 (433)
- ...+-+..+. .+-.....+..++..|++-+..+|++ -++.+.
T Consensus 274 ------------------------~-----~~~ee~l~~s-~l~~~~~~~~~~i~~fek~i~f~~G~yv~H~~W 317 (906)
T PRK14720 274 ------------------------H-----SLLEDYLKMS-DIGNNRKPVKDCIADFEKNIVFDTGNFVYHRTW 317 (906)
T ss_pred ------------------------c-----chHHHHHHHh-ccccCCccHHHHHHHHHHHeeecCCCEEEEcCC
Confidence 1 3334455566 45444467789999999999999998 444433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=111.09 Aligned_cols=171 Identities=16% Similarity=0.076 Sum_probs=135.8
Q ss_pred HhhhhCCCCCCCchhHHHHHHHHHHhh---cCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccch
Q 013948 23 FLDSVEPAPGVDLEGLEVARECLTEVF---KLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFS 99 (433)
Q Consensus 23 ~l~~~~~~~~~~~~~~e~A~~~~~kAl---~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (433)
||++.......+++..+.|..+|.+|+ ++||+++.+|.. +.. .+-.....++.
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~---lA~---~h~~~~~~g~~------------------ 314 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCL---LAE---CHMSLALHGKS------------------ 314 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHH---HHH---HHHHHHHhcCC------------------
Confidence 788888888899999999999999999 999999833221 111 11111110000
Q ss_pred hhhcccCcccccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHH
Q 013948 100 EASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAE 179 (433)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 179 (433)
. ...+..+|....+++++++|.+ +.
T Consensus 315 --------------------~-------------------------~~~~~~~a~~~A~rAveld~~D----------a~ 339 (458)
T PRK11906 315 --------------------E-------------------------LELAAQKALELLDYVSDITTVD----------GK 339 (458)
T ss_pred --------------------C-------------------------chHHHHHHHHHHHHHHhcCCCC----------HH
Confidence 0 1357788999999999999988 89
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHH
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA-YYA 258 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~ 258 (433)
++..+|.+....++++.|+..|++|+.++|+.+.+|+..|.+....|+.++|++.++++++++|.-..+-...-.+ .+-
T Consensus 340 a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~ 419 (458)
T PRK11906 340 ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV 419 (458)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999877665554444 555
Q ss_pred cCCHHHHHHHHHHHH
Q 013948 259 QGNYNDAIEKGFKKA 273 (433)
Q Consensus 259 ~g~~~~A~~~~~~~a 273 (433)
..-.+.|+. .|-+-
T Consensus 420 ~~~~~~~~~-~~~~~ 433 (458)
T PRK11906 420 PNPLKNNIK-LYYKE 433 (458)
T ss_pred CCchhhhHH-HHhhc
Confidence 677888888 66543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-11 Score=86.40 Aligned_cols=66 Identities=38% Similarity=0.541 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh-cHHHHHHHHHHHHhcCC
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH-QYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p 243 (433)
+..|..+|.+++..|+|++|+..|+++++++|+++.+|+++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 7889999999999999999999999999999999999999999999999 89999999999999998
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.4e-10 Score=91.40 Aligned_cols=109 Identities=12% Similarity=0.091 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGL 254 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 254 (433)
++..+..+..|.-++..|++++|...|+-....+|.++..|..||.|+..+++|++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCCHHHHH
Q 013948 255 AYYAQGNYNDAIEKGFKKALQLDPNNEAVKE 285 (433)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~ 285 (433)
|+..+|+.+.|.. +|+.++. .|.+..+..
T Consensus 114 C~l~l~~~~~A~~-~f~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 114 CQLLMRKAAKARQ-CFELVNE-RTEDESLRA 142 (165)
T ss_pred HHHHhCCHHHHHH-HHHHHHh-CcchHHHHH
Confidence 9999999999999 9999998 465544433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.9e-10 Score=104.84 Aligned_cols=137 Identities=22% Similarity=0.214 Sum_probs=124.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+++.|+..++..+...|+| ++.+...+.+++..++..+|++.+++++.++|+.+..++++|.+|++.|
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N----------~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDN----------PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred hcccchHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC
Confidence 489999999999999999988 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL 294 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (433)
++.+|+..++..+..+|+++..|..||.+|..+|+-.+|.. .+.+.+.+..+-..+...+..+....
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-ARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998 88888877776666666555554433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.2e-10 Score=96.48 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=101.5
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQ 224 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~ 224 (433)
+.+..+...+.+.++..+ ....+..++.+|.++...|++++|+..|.+++.+.|+. +.+|+++|.++..
T Consensus 13 ~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 13 KTFTIVADILLRILPTTS--------GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS 84 (168)
T ss_pred cccccchhhhhHhccCCc--------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 345566666655544322 23347889999999999999999999999999987763 4689999999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhhCCCCH
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY-------AQGNYN-------DAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-------~~g~~~-------~A~~~~~~~al~~~p~~~ 281 (433)
.|++++|+..|+++++++|.+...+..+|.++. .+|+++ +|+. ++++++..+|.+.
T Consensus 85 ~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~-~~~~a~~~~p~~~ 154 (168)
T CHL00033 85 NGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAE-YWKQAIALAPGNY 154 (168)
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHH-HHHHHHHhCcccH
Confidence 999999999999999999999999999999999 777776 5555 6667777788654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.6e-10 Score=93.24 Aligned_cols=118 Identities=34% Similarity=0.620 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL 252 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 252 (433)
+..+..-|+-++..|+|++|...|..||.++|.. ..+|.++|.++++++.++.|+..+.++|+++|.+..++.+.
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 6677788999999999999999999999999986 45889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013948 253 GLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 253 g~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
|.+|.++..|++|+. .|++.++.+|....+...+.++--....
T Consensus 175 Aeayek~ek~eeale-DyKki~E~dPs~~ear~~i~rl~~~i~e 217 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALE-DYKKILESDPSRREAREAIARLPPKINE 217 (271)
T ss_pred HHHHHhhhhHHHHHH-HHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence 999999999999999 9999999999998888877766544433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.6e-10 Score=118.15 Aligned_cols=242 Identities=10% Similarity=-0.020 Sum_probs=187.7
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-GNNAVYYSNRAAAYTQ 224 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 224 (433)
..|++++|+.+|++.....-. |+ ...+..+...+...|++++|...+...++.. +.+..++..+...|.+
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~--------pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVS--------ID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCC--------CC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 368999999999988664211 11 4578888888999999999999999998875 5577888899999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHhcc
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL--DPNNEAVKENIRMAEQKLREERQRTG 302 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~a~~ 302 (433)
.|++++|...|++..+ .+...|..+...|.+.|+.++|++ .|++..+. .| +...+..+..++...|..+++..
T Consensus 373 ~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~-lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 373 WGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVE-MFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred CCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHH
Confidence 9999999999998754 356789999999999999999999 99998764 34 45567777778888899998888
Q ss_pred cccccCC----Ccc----chhhhhhhcCCCCCCCCCcc-cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhh
Q 013948 303 WDQTTSS----SHY----SQESNQSTGGFRSHGTPPSF-TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVS 373 (433)
Q Consensus 303 ~~~~~~~----~~~----~~~~~~~~~~~~~~~A~~~~-al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~a 373 (433)
.+..... .|. ......|.+.|++++|.+.+ .+...| +. ..|..+. ..+...|+.+.|...+++.
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p-----~~-~~~~~Ll-~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKP-----TV-NMWAALL-TACRIHKNLELGRLAAEKL 520 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCC-----CH-HHHHHHH-HHHHHcCCcHHHHHHHHHH
Confidence 8766542 121 12256788889999999988 766777 54 4688888 8889999999999999999
Q ss_pred cCCCCCccccccccccc-c-cCCcHHHHHHHHHHHhh
Q 013948 374 GSDEPGIRIGGNINLNF-G-ENMPEDITGALRSMMEM 408 (433)
Q Consensus 374 l~l~P~~~~~~~~~~~l-~-~~~~~~~~~a~~~~~~~ 408 (433)
++++|++.....++..+ . ...+++..+.++.|.++
T Consensus 521 ~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 521 YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred hCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999983333333333 2 56777777777777654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.7e-10 Score=117.90 Aligned_cols=193 Identities=7% Similarity=-0.033 Sum_probs=154.8
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH--------
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS-------- 246 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------- 246 (433)
+....++..+...+...+++++|+..+..+++.+|+...+|+.+|.++.+.+++.++... .++...+.+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 344889999999999999999999999999999999999999999999999988777666 6666555554
Q ss_pred -----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh
Q 013948 247 -----------KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQE 315 (433)
Q Consensus 247 -----------~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 315 (433)
.+++.+|.||-++|++++|.. .|+++++++|+++.+..++|..+... +.++|...+.++...
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~-~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKG-VWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHH-HHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 899999999999999999999 99999999999999999999999999 999999987765422
Q ss_pred hhhhhcCCCCCCCCCcc--cccCCCCCC---------------CccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 316 SNQSTGGFRSHGTPPSF--TMPFNTNAL---------------PTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 316 ~~~~~~~~~~~~A~~~~--al~~~p~~~---------------~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
|...++|.++.+.- .+..+|..- -......+..+- ..|...+++++++..++.+++.+|
T Consensus 179 ---~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~-~~y~~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 179 ---FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY-EPYKALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred ---HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH-HHHhhhhhhhHHHHHHHHHHhcCC
Confidence 33334444444433 444555100 002223333444 667788899999999999999999
Q ss_pred Cc
Q 013948 379 GI 380 (433)
Q Consensus 379 ~~ 380 (433)
.+
T Consensus 255 ~n 256 (906)
T PRK14720 255 KN 256 (906)
T ss_pred cc
Confidence 99
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=115.13 Aligned_cols=149 Identities=13% Similarity=0.089 Sum_probs=105.9
Q ss_pred HHHHHHhhhhCCCCCCCchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCcc
Q 013948 18 RSFLHFLDSVEPAPGVDLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAK 97 (433)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (433)
.++-.||++.......+++.++.|+.||++|+++||+++.++ ..+...+... . .
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~---A~la~~~~~~----~-~------------------ 391 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQ---AEKALADIVR----H-S------------------ 391 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHH---HHHHHHHHHH----H-h------------------
Confidence 455667777766777789999999999999999999997222 2111111110 0 0
Q ss_pred chhhhcccCcccccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHH--Hhhccccccchh
Q 013948 98 FSEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINE--MEKSGAHAYNQK 175 (433)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 175 (433)
|.. ....++..+....++++.+ +|..
T Consensus 392 -----------------~~~---------------------------~~~~~l~~a~~~~~~a~al~~~~~~-------- 419 (517)
T PRK10153 392 -----------------QQP---------------------------LDEKQLAALSTELDNIVALPELNVL-------- 419 (517)
T ss_pred -----------------cCC---------------------------ccHHHHHHHHHHHHHhhhcccCcCC--------
Confidence 000 0123455666666666664 3332
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHH
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSK 247 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 247 (433)
+.++..+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus 420 --~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 420 --PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 56777788888888889999999999998888 5788888898888899999999999999999888774
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-10 Score=87.54 Aligned_cols=82 Identities=29% Similarity=0.440 Sum_probs=74.1
Q ss_pred HccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIALCGN--NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 267 (433)
.+|+|+.|+..|+++++..|. +..+++.+|.|+++.|+|++|+..+++ +..+|.+...++.+|.|+..+|+|++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 567888899999999999999999999 88999999999999999999999999999
Q ss_pred HHHHHH
Q 013948 268 KGFKKA 273 (433)
Q Consensus 268 ~~~~~a 273 (433)
.|+++
T Consensus 80 -~l~~~ 84 (84)
T PF12895_consen 80 -ALEKA 84 (84)
T ss_dssp -HHHHH
T ss_pred -HHhcC
Confidence 99875
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.3e-09 Score=92.11 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=125.9
Q ss_pred hhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHH
Q 013948 120 KDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIE 199 (433)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 199 (433)
...++......+.. |+|.+|+..|++++...|.. +....+.+.+|.+++..|++++|+.
T Consensus 5 ~~~lY~~a~~~~~~--------------g~y~~Ai~~f~~l~~~~P~s-------~~a~~A~l~la~a~y~~~~y~~A~~ 63 (203)
T PF13525_consen 5 AEALYQKALEALQQ--------------GDYEEAIKLFEKLIDRYPNS-------PYAPQAQLMLAYAYYKQGDYEEAIA 63 (203)
T ss_dssp HHHHHHHHHHHHHC--------------T-HHHHHHHHHHHHHH-TTS-------TTHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHCCCC-------hHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44556666666655 99999999999999999975 5558899999999999999999999
Q ss_pred HHHHHHHhcCCC---HHHHHHHHHHHHHhhc-----------HHHHHHHHHHHHhcCCCcHH-----------------H
Q 013948 200 LYSFAIALCGNN---AVYYSNRAAAYTQIHQ-----------YAEAVRDCLKSIDIDPNYSK-----------------A 248 (433)
Q Consensus 200 ~~~~al~~~p~~---~~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~-----------------~ 248 (433)
.|++.++..|++ ..+++.+|.+++.+.. ..+|+..|+..+...|++.. -
T Consensus 64 ~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 64 AYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp HHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 4689999999877643 35899999999999998532 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHh
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE---AVKENIRMAEQKLREERQR 300 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a 300 (433)
-+.+|..|++.|.|..|+. .++.+++..|+.+ .++..+..++..+|....+
T Consensus 144 e~~ia~~Y~~~~~y~aA~~-r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAII-RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHH-HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHcccHHHHHH-HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 3446888999999999999 9999999999875 5677888888888887744
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-09 Score=116.49 Aligned_cols=241 Identities=10% Similarity=-0.015 Sum_probs=158.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----cCCCHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL----CGNNAVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~ 222 (433)
.|++++|+.+|.+.....-. |+ ...|..+...+.+.|++++|.+.|.+.... .| +...|..+-.+|
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~--------PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay 589 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVK--------PD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKAC 589 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHH
Confidence 57888888888777654211 11 456777777778888888888888877652 34 456677777778
Q ss_pred HHhhcHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDID-PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL--DPNNEAVKENIRMAEQKLREERQ 299 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~ 299 (433)
.+.|++++|++.|+...+.+ +.+...|..+...|.+.|++++|+. .|.+..+. .| +...+..+...+.+.|+.++
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~-lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS-IYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH-HHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHH
Confidence 88888888888888887776 4466777778888888888888888 88777764 34 35567777777777777777
Q ss_pred hcccccccCC---Ccc----chhhhhhhcCCCCCCCCCcc-cc---cCCCCCCCccHHHHHHHHhhcccccCCChhhHHH
Q 013948 300 RTGWDQTTSS---SHY----SQESNQSTGGFRSHGTPPSF-TM---PFNTNALPTDIASMLMNMASNMPQAQPSQSRQGE 368 (433)
Q Consensus 300 a~~~~~~~~~---~~~----~~~~~~~~~~~~~~~A~~~~-al---~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~ 368 (433)
|......+.. .+. ......|...|++++|+..| .+ ...| +. ..|..+. ..|...|+.++|++
T Consensus 668 A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-----dv-vtyN~LI-~gy~k~G~~eeAle 740 (1060)
T PLN03218 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-----TV-STMNALI-TALCEGNQLPKALE 740 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----CH-HHHHHHH-HHHHHCCCHHHHHH
Confidence 7776555432 111 11245677778888888777 22 3445 43 4577777 77888888888888
Q ss_pred HHhhhc--CCCCCcccccccccccc-cCCcHHHHHHHHHHH
Q 013948 369 DSNVSG--SDEPGIRIGGNINLNFG-ENMPEDITGALRSMM 406 (433)
Q Consensus 369 ~~~~al--~l~P~~~~~~~~~~~l~-~~~~~~~~~a~~~~~ 406 (433)
.+++.. ...|+...+..++..++ ....+.....+..|.
T Consensus 741 lf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888654 34566644444443332 344444444444443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.5e-10 Score=113.88 Aligned_cols=140 Identities=12% Similarity=0.111 Sum_probs=120.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
..+++.|......+-+..|.. ...+.|..+|..+...+++.+|+..|+.+++.+|.+..+|..+|.+|...|
T Consensus 539 ~~~we~a~~I~l~~~qka~a~--------~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sG 610 (1238)
T KOG1127|consen 539 ESTWEEAFEICLRAAQKAPAF--------ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESG 610 (1238)
T ss_pred cccHHHHHHHHHHHhhhchHH--------HHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcC
Confidence 567888888866666655432 124567779999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLR 295 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 295 (433)
++..|++.|.++..++|.+..+.+..+.+....|+|.+|+. .+...+............++.++.++.
T Consensus 611 ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald-~l~~ii~~~s~e~~~q~gLaE~~ir~a 678 (1238)
T KOG1127|consen 611 RYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD-ALGLIIYAFSLERTGQNGLAESVIRDA 678 (1238)
T ss_pred ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 999988877666666666666665543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.9e-09 Score=103.57 Aligned_cols=217 Identities=11% Similarity=0.058 Sum_probs=170.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+-++|..+.+.++..++.+ .-.|..+|.++...++|++|+++|+.|+.+.|++..+|..++.+..+++
T Consensus 54 lg~~~ea~~~vr~glr~d~~S----------~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR 123 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKS----------HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR 123 (700)
T ss_pred ccchHHHHHHHHHHhccCccc----------chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 688999999999999988887 7789999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC---CCCHHH-----HHHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD---PNNEAV-----KENIRMAEQKLREER 298 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~---p~~~~~-----~~~l~~~~~~~~~~~ 298 (433)
+++.....-.+.+.+.|.....|+..+..+...|++..|.. .++...+.. |..... ......+....|..+
T Consensus 124 d~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~-il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q 202 (700)
T KOG1156|consen 124 DYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE-ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQ 202 (700)
T ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHH
Confidence 99999999999999999999999999999999999999999 877766554 433222 222333344445555
Q ss_pred HhcccccccCCCcc------chhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHH-HH
Q 013948 299 QRTGWDQTTSSSHY------SQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQG-ED 369 (433)
Q Consensus 299 ~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~-~~ 369 (433)
++......-..... ...+.+++..+++++|+..+ .+..+| ++...+..+- .++..-.+.-+++ ..
T Consensus 203 ~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP-----dn~~Yy~~l~-~~lgk~~d~~~~lk~l 276 (700)
T KOG1156|consen 203 KALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP-----DNLDYYEGLE-KALGKIKDMLEALKAL 276 (700)
T ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-----hhHHHHHHHH-HHHHHHhhhHHHHHHH
Confidence 55554333221111 12267889999999999999 889999 9999988888 7774223334444 55
Q ss_pred HhhhcCCCCCc
Q 013948 370 SNVSGSDEPGI 380 (433)
Q Consensus 370 ~~~al~l~P~~ 380 (433)
|...-+.-|..
T Consensus 277 y~~ls~~y~r~ 287 (700)
T KOG1156|consen 277 YAILSEKYPRH 287 (700)
T ss_pred HHHHhhcCccc
Confidence 55555554544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.8e-10 Score=110.75 Aligned_cols=123 Identities=23% Similarity=0.236 Sum_probs=88.4
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
+.-++|..++.++-.++|.. +..|+..|.++...|++.+|.+.|..|+.++|+++.+...+|.++.+.|+
T Consensus 664 ~~~~~a~~CL~Ea~~~~~l~----------~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 664 GNDDEARSCLLEASKIDPLS----------ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS 733 (799)
T ss_pred CCchHHHHHHHHHHhcchhh----------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 45556666666666666655 67777777777777777777777777777777777777777777777776
Q ss_pred HHHHHH--HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 228 YAEAVR--DCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 228 ~~~A~~--~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
..-|.. .+..+++++|.++++|+.+|.++..+|+.++|.+ +|..++++.+.+|
T Consensus 734 ~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae-cf~aa~qLe~S~P 788 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE-CFQAALQLEESNP 788 (799)
T ss_pred cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH-HHHHHHhhccCCC
Confidence 666666 7777777777777777777777777777777777 7777777766554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-10 Score=99.01 Aligned_cols=204 Identities=16% Similarity=0.129 Sum_probs=149.3
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGL 254 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 254 (433)
...+..++..|..|-..|-+.-|.-.|.+++.+.|+-+.+++.+|.-+...|+|+.|.+.|+..++++|.+..++.+.|.
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 34478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh----hhhhhcCCCCCCCCC
Q 013948 255 AYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQE----SNQSTGGFRSHGTPP 330 (433)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~A~~ 330 (433)
.++--|+|.-|.+ .+.+-.+-+|++|--..++-..-.+..-.+......+.........+ ...|+..=.-+...+
T Consensus 142 ~~YY~gR~~LAq~-d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~ 220 (297)
T COG4785 142 ALYYGGRYKLAQD-DLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLME 220 (297)
T ss_pred eeeecCchHhhHH-HHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHH
Confidence 9999999999999 99999999999986544444433333322222222222222221222 122332211111111
Q ss_pred cc-cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 331 SF-TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 331 ~~-al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.. +-..+.....+...+.++.+| +.+...|+.++|...|+-++..+--+
T Consensus 221 ~~~a~a~~n~~~Ae~LTEtyFYL~-K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 221 RLKADATDNTSLAEHLTETYFYLG-KYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred HHHhhccchHHHHHHHHHHHHHHH-HHHhccccHHHHHHHHHHHHHHhHHH
Confidence 11 222222222345667899999 99999999999999999998765433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-09 Score=108.03 Aligned_cols=191 Identities=14% Similarity=0.057 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...|-....||...|+..+|.....+-++ .|+++..|..+|.+.....-|++|.+..+.. +..+.+.+|...+
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~ 496 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLIL 496 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccc
Confidence 66777788888888998899888888888 6777888888877776554455544444432 2335566666666
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCC
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFN 337 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~ 337 (433)
..++|+++.. +++..++++|-....|+.+|.+..+++++..+...+. +.+.++
T Consensus 497 ~~~~fs~~~~-hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~--------------------------rcvtL~ 549 (777)
T KOG1128|consen 497 SNKDFSEADK-HLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH--------------------------RCVTLE 549 (777)
T ss_pred cchhHHHHHH-HHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH--------------------------HHhhcC
Confidence 6677777777 7777777777777777777777777776665555444 156666
Q ss_pred CCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-cccccccccc-ccCCcHHHHHHHHHHHhh
Q 013948 338 TNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNF-GENMPEDITGALRSMMEM 408 (433)
Q Consensus 338 p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l-~~~~~~~~~~a~~~~~~~ 408 (433)
| ++.++|.+++ .+|...|+..+|...+++|++-+-++ .++-|..... .-..+++...|+.++..+
T Consensus 550 P-----d~~eaWnNls-~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 550 P-----DNAEAWNNLS-TAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred C-----Cchhhhhhhh-HHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 7 7777777777 66777777777777777777666444 3333332211 123444555555555443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.4e-10 Score=80.35 Aligned_cols=64 Identities=34% Similarity=0.578 Sum_probs=41.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 217 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+. +|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~-~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALA-YYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHH-HHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCcCCC
Confidence 456666666666666666666666666666666666666666666666666 6666666666653
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-09 Score=117.67 Aligned_cols=236 Identities=12% Similarity=0.037 Sum_probs=167.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-cCCCHHH-----------
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL-CGNNAVY----------- 214 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~----------- 214 (433)
.|++++|.++|++..+ .+ ...|..+...+...|++++|+..|++.+.. .|+....
T Consensus 437 ~g~~~~A~~vf~~m~~---~d----------~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 437 CKCIDKALEVFHNIPE---KD----------VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIG 503 (857)
T ss_pred cCCHHHHHHHHHhCCC---CC----------eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhc
Confidence 5777888777776432 11 345667777777788888888888777643 3333222
Q ss_pred -----------------------HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013948 215 -----------------------YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFK 271 (433)
Q Consensus 215 -----------------------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 271 (433)
+..+-..|.+.|+.++|...|+.. +.+...|..+...|.+.|+.++|+. .|+
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~-lf~ 578 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVE-LFN 578 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHH-HHH
Confidence 223336788888899998888875 5677889999999999999999999 999
Q ss_pred HHHhh--CCCCHHHHHHHHHHHHHHHHHHHhcccccccCC----Cccc----hhhhhhhcCCCCCCCCCcc-cccCCCCC
Q 013948 272 KALQL--DPNNEAVKENIRMAEQKLREERQRTGWDQTTSS----SHYS----QESNQSTGGFRSHGTPPSF-TMPFNTNA 340 (433)
Q Consensus 272 ~al~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~----~~~~~~~~~~~~~~A~~~~-al~~~p~~ 340 (433)
+..+. .|+.. .+..+-.++...|..+++..++..... .|.. .....+.+.|++++|.+.+ .+...|
T Consensus 579 ~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p-- 655 (857)
T PLN03077 579 RMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITP-- 655 (857)
T ss_pred HHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCC--
Confidence 98764 45544 455555667888999998888766541 2221 1246788889999999988 777777
Q ss_pred CCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCcccccccccccc--cCCcHHHHHHHHHHHhh
Q 013948 341 LPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGIRIGGNINLNFG--ENMPEDITGALRSMMEM 408 (433)
Q Consensus 341 ~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~~~l~--~~~~~~~~~a~~~~~~~ 408 (433)
+ +..|..+- ..+...|+.+.+....++.++++|++.....++..+. ...+++..+..+.|.++
T Consensus 656 ---d-~~~~~aLl-~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 656 ---D-PAVWGALL-NACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred ---C-HHHHHHHH-HHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 5 45666666 6677789999999999999999999844433333332 56777777777777654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-09 Score=87.90 Aligned_cols=119 Identities=23% Similarity=0.192 Sum_probs=100.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 223 (433)
.++...+...+++.+..+|.. +....+.+.+|.+++..|++++|+..|++++...|+. ..+.+.+|.++.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s-------~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSS-------PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCC-------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 478888888889888887765 3446788889999999999999999999999987665 457888999999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al 274 (433)
..|++++|+..++. +.-.+-.+.++..+|.++...|++++|+. .|++++
T Consensus 97 ~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~-~y~~Al 145 (145)
T PF09976_consen 97 QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARA-AYQKAL 145 (145)
T ss_pred HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHH-HHHHhC
Confidence 99999999999976 34445567788889999999999999999 999875
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-09 Score=103.80 Aligned_cols=225 Identities=12% Similarity=0.126 Sum_probs=158.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+|++|+....+.+...|++ ..+....-.++.+.++|++|+...++-....- .....+..+.|.++++
T Consensus 25 ~~e~e~a~k~~~Kil~~~pdd----------~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIVPDD----------EDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYRLN 93 (652)
T ss_pred chHHHHHHHHHHHHHhcCCCc----------HhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHHcc
Confidence 589999999999999998887 88899999999999999999955444322221 1223378999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
..++|+..++ .+++.+.......|++++++|+|++|+. .|+..++.+.++.+........-. +..-.+. +.+.
T Consensus 94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydeald-iY~~L~kn~~dd~d~~~r~nl~a~--~a~l~~~-~~q~ 166 (652)
T KOG2376|consen 94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALD-IYQHLAKNNSDDQDEERRANLLAV--AAALQVQ-LLQS 166 (652)
T ss_pred cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcCCchHHHHHHHHHHHH--HHhhhHH-HHHh
Confidence 9999999999 6677788899999999999999999999 999998876655443332221111 1111111 1222
Q ss_pred cCCCccc------hhhhhhhcCCCCCCCCCcc--c--------ccCCCC--CCCccHHHHHHHHhhcccccCCChhhHHH
Q 013948 307 TSSSHYS------QESNQSTGGFRSHGTPPSF--T--------MPFNTN--ALPTDIASMLMNMASNMPQAQPSQSRQGE 368 (433)
Q Consensus 307 ~~~~~~~------~~~~~~~~~~~~~~A~~~~--a--------l~~~p~--~~~~~~~~a~~~la~~~~~~~g~~~~A~~ 368 (433)
....+.+ ..+-.+...|+|.+|++.+ + ...+.+ ..-.+......+++ .+++.+|+.++|..
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla-yVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA-YVLQLQGQTAEASS 245 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH-HHHHHhcchHHHHH
Confidence 2211111 1134456668888888777 5 222221 11134556788999 99999999999999
Q ss_pred HHhhhcCCCCCc----cccccccccc
Q 013948 369 DSNVSGSDEPGI----RIGGNINLNF 390 (433)
Q Consensus 369 ~~~~al~l~P~~----~~~~~~~~~l 390 (433)
.|...+..+|-+ .+..|.+..+
T Consensus 246 iy~~~i~~~~~D~~~~Av~~NNLva~ 271 (652)
T KOG2376|consen 246 IYVDIIKRNPADEPSLAVAVNNLVAL 271 (652)
T ss_pred HHHHHHHhcCCCchHHHHHhcchhhh
Confidence 999999999988 4445656555
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.9e-09 Score=95.58 Aligned_cols=177 Identities=12% Similarity=0.044 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVY---YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 251 (433)
+..++..|..++..|+|++|++.|++.+...|..+.+ .+.+|.++++.+++++|+..+++.++.+|++ +.+++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 6678889999999999999999999999999998654 5899999999999999999999999999886 578999
Q ss_pred HHHHHHHcC---------------C---HHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHhcccccccCCC
Q 013948 252 LGLAYYAQG---------------N---YNDAIEKGFKKALQLDPNNE---AVKENIRMAEQKLREERQRTGWDQTTSSS 310 (433)
Q Consensus 252 lg~~~~~~g---------------~---~~~A~~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 310 (433)
+|.++...+ + ..+|+. .|++.++..|+.. .+...+..+...+.+.+-
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~-~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~----------- 179 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR-DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL----------- 179 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHH-HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH-----------
Confidence 999875554 1 357888 9999999999874 455555555555554442
Q ss_pred ccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhh
Q 013948 311 HYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNV 372 (433)
Q Consensus 311 ~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~ 372 (433)
..+..|.+.|.|..|+.-+ ++..-| .++ ...++.+.++ ..+..+|..++|......
T Consensus 180 ---~ia~~Y~~~~~y~AA~~r~~~v~~~Yp-~t~-~~~eal~~l~-~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 ---SVAEYYTKRGAYVAVVNRVEQMLRDYP-DTQ-ATRDALPLME-NAYRQLQLNAQADKVAKI 237 (243)
T ss_pred ---HHHHHHHHcCchHHHHHHHHHHHHHCC-CCc-hHHHHHHHHH-HHHHHcCChHHHHHHHHH
Confidence 1235667777777777777 666666 222 5677888888 889999999999876543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.9e-10 Score=80.61 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=60.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS 246 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 246 (433)
+.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999985
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-08 Score=92.04 Aligned_cols=165 Identities=13% Similarity=0.054 Sum_probs=134.7
Q ss_pred ChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHH
Q 013948 119 SKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAI 198 (433)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 198 (433)
+....+......+.. |++++|+..|++++..+|.. +....+.+.+|.++++.+++++|+
T Consensus 31 ~~~~~Y~~A~~~~~~--------------g~y~~Ai~~f~~l~~~yP~s-------~~a~~a~l~la~ayy~~~~y~~A~ 89 (243)
T PRK10866 31 PPSEIYATAQQKLQD--------------GNWKQAITQLEALDNRYPFG-------PYSQQVQLDLIYAYYKNADLPLAQ 89 (243)
T ss_pred CHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHHHhcCCHHHHH
Confidence 455556666666554 99999999999999999875 444667899999999999999999
Q ss_pred HHHHHHHHhcCCC---HHHHHHHHHHHHHhh------------------cHHHHHHHHHHHHhcCCCcHH----------
Q 013948 199 ELYSFAIALCGNN---AVYYSNRAAAYTQIH------------------QYAEAVRDCLKSIDIDPNYSK---------- 247 (433)
Q Consensus 199 ~~~~~al~~~p~~---~~~~~~la~~~~~~~------------------~~~~A~~~~~~al~~~p~~~~---------- 247 (433)
..|++.++.+|++ ..+++.+|.++...+ ...+|+..|+..++..|+...
T Consensus 90 ~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~ 169 (243)
T PRK10866 90 AAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVF 169 (243)
T ss_pred HHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
Confidence 9999999999987 578999998875554 135788999999999998532
Q ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHHHHhccccc
Q 013948 248 -------AYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN---EAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 248 -------~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
--+..|..|.+.|.|..|+. -++.+++..|+. ++++..+..++..+|..+++..+..
T Consensus 170 l~~~la~~e~~ia~~Y~~~~~y~AA~~-r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 170 LKDRLAKYELSVAEYYTKRGAYVAVVN-RVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHH-HHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 22345778999999999999 999999998875 6678888999999999888876543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-10 Score=107.03 Aligned_cols=275 Identities=12% Similarity=0.090 Sum_probs=184.0
Q ss_pred CCchhHHHHHHHHHHhhcCCCCCC----CCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcc
Q 013948 33 VDLEGLEVARECLTEVFKLDSPSA----DGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGED 108 (433)
Q Consensus 33 ~~~~~~e~A~~~~~kAl~ldP~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (433)
+-.++++..+..|++|+++--++- .+|...|+.+-.+..|.++.+.-. .|-....+++.
T Consensus 28 ck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~----------------hDltlar~lgd- 90 (639)
T KOG1130|consen 28 CKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT----------------HDLTLARLLGD- 90 (639)
T ss_pred HhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhh----------------hhHHHHHHhcc-
Confidence 456678899999999999988775 223344444555555665555110 00000001110
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Q 013948 109 WTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRV 188 (433)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~ 188 (433)
-+.....-.+++....-.|.|++|+.++.+-|+....-+ +......++|++|++|
T Consensus 91 ---------------------klGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg----Drv~e~RAlYNlgnvY 145 (639)
T KOG1130|consen 91 ---------------------KLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG----DRVLESRALYNLGNVY 145 (639)
T ss_pred ---------------------hhccccccccccchhhhhcccchHHHHHHHHhHHHHHHh----HHHhhhHHHhhhhhhh
Confidence 001111112222222337999999999999998866543 2344588999999999
Q ss_pred HHccC--------------------HHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q 013948 189 MQSQQ--------------------YSDAIELYSFAIALCGNN------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID 242 (433)
Q Consensus 189 ~~~~~--------------------~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 242 (433)
...|+ ++.|.++|..-+++.... ..++-++|..|+-+|+|+.|+..-+.-+.+.
T Consensus 146 hakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia 225 (639)
T KOG1130|consen 146 HAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIA 225 (639)
T ss_pred hhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHH
Confidence 87764 345566666555553322 3578899999999999999999998888775
Q ss_pred CC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh----CCC--CHHHHHHHHHHHHHHHHHHHhcccccccCCC
Q 013948 243 PN------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL----DPN--NEAVKENIRMAEQKLREERQRTGWDQTTSSS 310 (433)
Q Consensus 243 p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~----~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 310 (433)
.. ...++.++|.++..+|+++.|++ +|++.+.+ ... .....+.||.+|..+.++++|+.+..+-...
T Consensus 226 ~efGDrAaeRRA~sNlgN~hiflg~fe~A~e-hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 226 QEFGDRAAERRAHSNLGNCHIFLGNFELAIE-HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred HHhhhHHHHHHhhcccchhhhhhcccHhHHH-HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44 24689999999999999999999 99987654 222 3456788999999999999999886532210
Q ss_pred ccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 311 HYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 311 ~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
.. .+..-. ....+++.+| +.+..+|..++|+...++.+++
T Consensus 305 Aq--------------------eL~Dri-----Ge~RacwSLg-na~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 305 AQ--------------------ELEDRI-----GELRACWSLG-NAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HH--------------------HHHHhh-----hhHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHH
Confidence 00 122223 4556888899 9999999999998777665543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.1e-10 Score=96.53 Aligned_cols=106 Identities=16% Similarity=0.228 Sum_probs=90.6
Q ss_pred ccCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHH
Q 013948 191 SQQYSDAIELYSFAIALCGNN--AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSRLGLAYYAQGNYNDA 265 (433)
Q Consensus 191 ~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A 265 (433)
.+.|..+...+.+.++.++.+ ..+|+.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 344666666666655566555 6788999999999999999999999999997763 46899999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013948 266 IEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297 (433)
Q Consensus 266 ~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 297 (433)
+. .+++++.++|.....+..++.++..+|+.
T Consensus 92 ~~-~~~~Al~~~~~~~~~~~~la~i~~~~~~~ 122 (168)
T CHL00033 92 LE-YYFQALERNPFLPQALNNMAVICHYRGEQ 122 (168)
T ss_pred HH-HHHHHHHhCcCcHHHHHHHHHHHHHhhHH
Confidence 99 99999999999999999999999866653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.6e-09 Score=95.43 Aligned_cols=108 Identities=11% Similarity=0.077 Sum_probs=97.7
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---cHHHHH
Q 013948 178 AEIFKCQGNRV-MQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN---YSKAYS 250 (433)
Q Consensus 178 ~~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~ 250 (433)
...++..|..+ +..|+|++|+..|++.+...|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46777778776 56799999999999999999998 589999999999999999999999999999887 478999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013948 251 RLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286 (433)
Q Consensus 251 ~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~ 286 (433)
.+|.++..+|++++|+. .|+++++..|+...+...
T Consensus 222 klg~~~~~~g~~~~A~~-~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKA-VYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred HHHHHHHHcCCHHHHHH-HHHHHHHHCcCCHHHHHH
Confidence 99999999999999999 999999999998765443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-10 Score=112.60 Aligned_cols=181 Identities=16% Similarity=0.155 Sum_probs=130.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
..|+..+|..+..+-++..| + +..|..+|.+.....=|++|.+..+.. ++.+...+|......
T Consensus 436 ~lg~~~kaeei~~q~lek~~-d----------~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~ 498 (777)
T KOG1128|consen 436 LLGQHGKAEEINRQELEKDP-D----------PRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSN 498 (777)
T ss_pred HhcccchHHHHHHHHhcCCC-c----------chhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccc
Confidence 35666666666666666322 2 666777777766555555555555442 334666667667777
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
++|+++..+++..++++|-....|+.+|.+..++++++.|.. +|..++.++|++.++|.+++.+|..+++..+|.....
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~-aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK-AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH-HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 888888888888888888888888888888888888888888 8888888888888888888888888888777766654
Q ss_pred ccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 306 TTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
. |++.+- +++..|.|.- .+..+.|.+++|+..|.+.+.+
T Consensus 578 E--------------------------AlKcn~-----~~w~iWENym-lvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 578 E--------------------------ALKCNY-----QHWQIWENYM-LVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred H--------------------------HhhcCC-----CCCeeeechh-hhhhhcccHHHHHHHHHHHHHh
Confidence 3 334444 5556666666 6667778888888888887655
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-08 Score=93.93 Aligned_cols=246 Identities=15% Similarity=0.118 Sum_probs=166.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
..||+.|+.+++-.+..+.+. .......+|.|++..|+|++|+..|+-+...+.-+...+.++|.|++-+|
T Consensus 35 ~rDytGAislLefk~~~~~EE---------E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREE---------EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLG 105 (557)
T ss_pred cccchhHHHHHHHhhccchhh---------hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHH
Confidence 468999999888777554332 24556668999999999999999999998877667899999999999999
Q ss_pred cHHHHHHHHHHHH--------------hcCC------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 227 QYAEAVRDCLKSI--------------DIDP------------NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 227 ~~~~A~~~~~~al--------------~~~p------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
.|.+|.....++- +++. +..+-.+.|+.+++..-.|.+|+. .|++++.-+|+.
T Consensus 106 ~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAId-vYkrvL~dn~ey 184 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAID-VYKRVLQDNPEY 184 (557)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHH-HHHHHHhcChhh
Confidence 9999988766542 2221 123445567778888888999999 999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCccch-h-h-----h---hh------------hcC----------------
Q 013948 281 EAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQ-E-S-----N---QS------------TGG---------------- 322 (433)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~-----~---~~------------~~~---------------- 322 (433)
...-..++.||.++.-++-+......-.....+. . . + .+ ...
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 8888888888888766555444322211111000 0 0 0 00 000
Q ss_pred ---CCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc----ccccccccccc-cCC
Q 013948 323 ---FRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI----RIGGNINLNFG-ENM 394 (433)
Q Consensus 323 ---~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~----~~~~~~~~~l~-~~~ 394 (433)
.+-+.|++.+ | ....-.|++..++. ..|..+|+..+|....+ +++|.. ..-+.....+| +..
T Consensus 265 VvFrngEgALqVL-----P-~L~~~IPEARlNL~-iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 265 VVFRNGEGALQVL-----P-SLMKHIPEARLNLI-IYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred EEEeCCccHHHhc-----h-HHHhhChHhhhhhe-eeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcC
Confidence 2223333333 3 11124558999999 99999999999988774 567776 22333333445 556
Q ss_pred cHHHHHHHHHHHhhcCCC
Q 013948 395 PEDITGALRSMMEMFSGP 412 (433)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~ 412 (433)
..+-....+.+..+.+++
T Consensus 335 SreHlKiAqqffqlVG~S 352 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGES 352 (557)
T ss_pred cHHHHHHHHHHHHHhccc
Confidence 666677777788777666
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.9e-10 Score=83.80 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=73.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+.+++++++..|.+ + ....++.+|.+++..|+|++|+..+++ +..+|.+...++.+|.|+.++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~-------~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTN-------P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGT-------H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHCCCC-------h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC
Confidence 589999999999999999853 1 266788899999999999999999999 8889988899999999999999
Q ss_pred cHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKS 238 (433)
Q Consensus 227 ~~~~A~~~~~~a 238 (433)
++++|+..++++
T Consensus 73 ~y~eAi~~l~~~ 84 (84)
T PF12895_consen 73 KYEEAIKALEKA 84 (84)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHhcC
Confidence 999999999875
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.3e-09 Score=103.52 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=108.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHh--cCCCHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS--------QQYSDAIELYSFAIAL--CGNNAVYYS 216 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~--~p~~~~~~~ 216 (433)
.+++.+|+.+|+++++++|++ +.++-.++.++... .+...+.....+++.+ +|.++.++.
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~----------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ 424 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDF----------TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYE 424 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHH
Confidence 467899999999999999988 77888777766543 2355677777776664 777889999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHH
Q 013948 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAV 283 (433)
Q Consensus 217 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~ 283 (433)
.+|......|++++|...+++|+.++| +..+|..+|.++...|++++|+. .|++|+.++|.++..
T Consensus 425 ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~-~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 425 ILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAAD-AYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCCchH
Confidence 999999999999999999999999999 57899999999999999999999 999999999998753
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-09 Score=93.97 Aligned_cols=171 Identities=23% Similarity=0.234 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 251 (433)
+..++..|..++..|+|.+|+..|++.+...|.+ ..+.+.+|.+++..|++++|+..+++.++..|++ +.+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 7789999999999999999999999999998876 6889999999999999999999999999999986 478999
Q ss_pred HHHHHHHcC-----------CHHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHHHHHHHhcccccccCCCccchhhh
Q 013948 252 LGLAYYAQG-----------NYNDAIEKGFKKALQLDPNNEA---VKENIRMAEQKLREERQRTGWDQTTSSSHYSQESN 317 (433)
Q Consensus 252 lg~~~~~~g-----------~~~~A~~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 317 (433)
+|.+++.+. ...+|+. .|+..+...|+++- +...+..+...+...+- ..+.
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~-~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~--------------~ia~ 149 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIE-EFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL--------------YIAR 149 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHH-HHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH--------------HHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHH-HHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH--------------HHHH
Confidence 999987653 3458999 99999999999754 44444544444444331 1235
Q ss_pred hhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhH
Q 013948 318 QSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQ 366 (433)
Q Consensus 318 ~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A 366 (433)
+|...|.|..|+.-+ ++..-|+ ++ ....++..++ ..+..+|..+.|
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~-t~-~~~~al~~l~-~~y~~l~~~~~a 197 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPD-TP-AAEEALARLA-EAYYKLGLKQAA 197 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTT-SH-HHHHHHHHHH-HHHHHTT-HHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-Cc-hHHHHHHHHH-HHHHHhCChHHH
Confidence 666677777777777 6666662 11 3445667777 778888887744
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-08 Score=109.76 Aligned_cols=246 Identities=11% Similarity=-0.006 Sum_probs=187.0
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-GNNAVYYSNRAAAYTQ 224 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 224 (433)
..|++++|..+|++....... | ....|..+...|.+.|++++|++.|.+..... ..+...|..+...+.+
T Consensus 484 k~G~vd~A~~vf~eM~~~Gv~--------P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k 554 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVNAGVE--------A-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCC--------C-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 368999999999988765321 1 16788888899999999999999999886643 2257788899999999
Q ss_pred hhcHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHH
Q 013948 225 IHQYAEAVRDCLKSIDI----DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD-PNNEAVKENIRMAEQKLREERQ 299 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~ 299 (433)
.|++++|.+.+...... .|+ ...|..+-.+|.+.|++++|.+ .|+...+.+ +.+...|..+...+.+.|+.++
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~e-lf~~M~e~gi~p~~~tynsLI~ay~k~G~~de 632 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKE-VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHH-HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Confidence 99999999999998763 444 5678888889999999999999 999998876 4577889999999999999999
Q ss_pred hcccccccCCC---ccc----hhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHH
Q 013948 300 RTGWDQTTSSS---HYS----QESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDS 370 (433)
Q Consensus 300 a~~~~~~~~~~---~~~----~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~ 370 (433)
|...+..+... |.. .....|...|++++|.+.+ ...... ..+...|..+. ..|...|++++|...|
T Consensus 633 Al~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~----~pd~~tynsLI-~ay~k~G~~eeA~~lf 707 (1060)
T PLN03218 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI----KLGTVSYSSLM-GACSNAKNWKKALELY 707 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CCCHHHHHHHH-HHHHhCCCHHHHHHHH
Confidence 99987766532 221 1245678889999999988 333221 03456788888 8999999999999999
Q ss_pred hhhcC--CCCCcccccccccccc-cCCcHHHHHHHHHHHh
Q 013948 371 NVSGS--DEPGIRIGGNINLNFG-ENMPEDITGALRSMME 407 (433)
Q Consensus 371 ~~al~--l~P~~~~~~~~~~~l~-~~~~~~~~~a~~~~~~ 407 (433)
+...+ ..|+...+..++..++ ....++..+.+..|.+
T Consensus 708 ~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 98754 5777655544444443 5666766666666653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-09 Score=113.17 Aligned_cols=215 Identities=8% Similarity=-0.075 Sum_probs=174.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|.+++...++..-.. ....+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~---------d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPL---------DIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHG 405 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCC---------CeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcC
Confidence 789999999999998864211 156788899999999999999999998653 36788999999999999
Q ss_pred cHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHHHHhccc
Q 013948 227 QYAEAVRDCLKSIDIDP-NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP--NNEAVKENIRMAEQKLREERQRTGW 303 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~ 303 (433)
+.++|++.|++..+... -+...+..+-.++...|..++|.. .|+...+..+ .+...+..+..++.+.|+.++|...
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~-~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE-IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999887542 245678888889999999999999 9999886433 2445788888999999999999998
Q ss_pred ccccCCCccchh----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC-
Q 013948 304 DQTTSSSHYSQE----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD- 376 (433)
Q Consensus 304 ~~~~~~~~~~~~----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l- 376 (433)
+......|.... ...+...|+++.|...+ .+..+| ++...|..++ ++|...|++++|.+.++...+.
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-----~~~~~y~~L~-~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP-----EKLNNYVVLL-NLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-----CCCcchHHHH-HHHHhCCCHHHHHHHHHHHHHcC
Confidence 877654443322 34566779999998888 788999 8888899999 9999999999999999875543
Q ss_pred ---CCCc
Q 013948 377 ---EPGI 380 (433)
Q Consensus 377 ---~P~~ 380 (433)
.|..
T Consensus 559 ~~k~~g~ 565 (697)
T PLN03081 559 LSMHPAC 565 (697)
T ss_pred CccCCCe
Confidence 4655
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.2e-09 Score=99.18 Aligned_cols=126 Identities=13% Similarity=0.075 Sum_probs=113.4
Q ss_pred chHHHHHHHHHHHH---HHHhhccccccchhhHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhcCCCHHHH
Q 013948 148 SQVDKASRIFHDAI---NEMEKSGAHAYNQKNLAEIFKCQGNRVMQS---------QQYSDAIELYSFAIALCGNNAVYY 215 (433)
Q Consensus 148 g~~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~ 215 (433)
...+.|..+|.+++ .++|.. +.+|..++.|++.. .+..+|.+...+|++++|.|+.++
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~----------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~ 341 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLK----------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKIL 341 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCccc----------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 46778999999999 777765 88888888887643 346789999999999999999999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHH
Q 013948 216 SNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284 (433)
Q Consensus 216 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~ 284 (433)
..+|.++...++++.|+..|++|+.++|+.+.+|+..|.++...|+.++|.. +++++++++|....+-
T Consensus 342 ~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~-~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 342 AIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARI-CIDKSLQLEPRRRKAV 409 (458)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH-HHHHHhccCchhhHHH
Confidence 9999999999999999999999999999999999999999999999999999 9999999999765543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-08 Score=81.03 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=86.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 223 (433)
.|++++|+..|.+++..+|.+ +....+++.+|.+++..|++++|+..|++++..+|++ +.+++.+|.++.
T Consensus 15 ~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 15 AGDYADAIQAFQAFLKKYPKS-------TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred cCCHHHHHHHHHHHHHHCCCc-------cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 589999999999999988764 2236789999999999999999999999999998885 678999999999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCcHHHH
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNYSKAY 249 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~~~~~ 249 (433)
+.|++++|+..+++++...|++..+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HhCChHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999999999999987654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-08 Score=101.44 Aligned_cols=218 Identities=11% Similarity=0.039 Sum_probs=163.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|++.+.+......+. ...+-.+|.++...|++++|...|...|+.+|++...+..+..+..-..
T Consensus 17 ~g~~~~AL~~L~~~~~~I~Dk----------~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQILDK----------LAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred CCCHHHHHHHHHhhhhhCCCH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 699999999998877665544 7788889999999999999999999999999999999888888872222
Q ss_pred -----cHHHHHHHHHHHHhcCC----------------------------------------------------------
Q 013948 227 -----QYAEAVRDCLKSIDIDP---------------------------------------------------------- 243 (433)
Q Consensus 227 -----~~~~A~~~~~~al~~~p---------------------------------------------------------- 243 (433)
+.+.-...|+......|
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 23333444443322222
Q ss_pred -----------------------Cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 013948 244 -----------------------NY--SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298 (433)
Q Consensus 244 -----------------------~~--~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 298 (433)
.. .++++.+|+.|...|++++|+. +.+++|+..|..++.+...|+++...|+..
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~-~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE-YIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 01 3567889999999999999999 999999999999999999999999999999
Q ss_pred HhcccccccCCCccchh------hhhhhcCCCCCCCCCcc-cccC---CCCCCCccHHHHHH--HHhhcccccCCChhhH
Q 013948 299 QRTGWDQTTSSSHYSQE------SNQSTGGFRSHGTPPSF-TMPF---NTNALPTDIASMLM--NMASNMPQAQPSQSRQ 366 (433)
Q Consensus 299 ~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~A~~~~-al~~---~p~~~~~~~~~a~~--~la~~~~~~~g~~~~A 366 (433)
+|..+...+........ ...+++.|+.++|...+ .... +|...-.+.--+|+ ..| .+|...|++..|
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a-~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECA-EAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHH-HHHHHHhhHHHH
Confidence 99998877763322211 45678889999999888 3322 23111111222443 345 788899999999
Q ss_pred HHHHhhhcCC
Q 013948 367 GEDSNVSGSD 376 (433)
Q Consensus 367 ~~~~~~al~l 376 (433)
+.-|..+.+.
T Consensus 325 Lk~~~~v~k~ 334 (517)
T PF12569_consen 325 LKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHH
Confidence 9888776544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-09 Score=93.28 Aligned_cols=93 Identities=23% Similarity=0.399 Sum_probs=83.5
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHH
Q 013948 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKE 285 (433)
Q Consensus 209 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~ 285 (433)
+....+++++|.++...|++++|+.+|+++++..|+. ..+++.+|.++...|++++|+. ++++++...|.+...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALE-YYHQALELNPKQPSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCcccHHHHH
Confidence 3457789999999999999999999999999987764 5789999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 013948 286 NIRMAEQKLREERQRTG 302 (433)
Q Consensus 286 ~l~~~~~~~~~~~~a~~ 302 (433)
.+|.++..+|+...+..
T Consensus 111 ~lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHHHcCChHhHhh
Confidence 99999998887655443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=76.99 Aligned_cols=93 Identities=31% Similarity=0.502 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
+++.+|.++...|++++|+..++++++..|.+..+++.+|.++...+++++|+. ++++++...|.+..++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALE-DYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCcchhHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHhccccccc
Q 013948 294 LREERQRTGWDQTT 307 (433)
Q Consensus 294 ~~~~~~a~~~~~~~ 307 (433)
.|+++.+......+
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 99999988776543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-08 Score=99.41 Aligned_cols=203 Identities=11% Similarity=0.056 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
.+.+.....++...|++++|++++.+....-.+...+.-.+|.++.++|++++|...|...|..+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 56777788899999999999999999988888889999999999999999999999999999999999999999988883
Q ss_pred HcC-----CHHHHHHHHHHHHHhhCCCC--------------------------------HHHHHHHHHHHHHHHHHHH-
Q 013948 258 AQG-----NYNDAIEKGFKKALQLDPNN--------------------------------EAVKENIRMAEQKLREERQ- 299 (433)
Q Consensus 258 ~~g-----~~~~A~~~~~~~al~~~p~~--------------------------------~~~~~~l~~~~~~~~~~~~- 299 (433)
... +.+.-.. .|.+.....|.. |.+..++...|..-.+..-
T Consensus 84 ~~~~~~~~~~~~~~~-~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLE-LYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred hhcccccccHHHHHH-HHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHH
Confidence 333 3444455 555555444432 2333333333321111000
Q ss_pred ---hccccccc-------------CCCccch-h-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhc
Q 013948 300 ---RTGWDQTT-------------SSSHYSQ-E-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASN 355 (433)
Q Consensus 300 ---a~~~~~~~-------------~~~~~~~-~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~ 355 (433)
...+.... ...|... + +..|...|++++|++.+ +|...| ..++.|+..| +
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-----t~~ely~~Ka-r 236 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-----TLVELYMTKA-R 236 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CcHHHHHHHH-H
Confidence 00000000 0111111 1 23455669999999999 999999 9999999999 9
Q ss_pred ccccCCChhhHHHHHhhhcCCCCCcccccccc
Q 013948 356 MPQAQPSQSRQGEDSNVSGSDEPGIRIGGNIN 387 (433)
Q Consensus 356 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~ 387 (433)
++...|++.+|.+++..|-++|+.|..+.+-.
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~ 268 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLADRYINSKC 268 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 99999999999999999999999995554433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=8e-09 Score=74.46 Aligned_cols=66 Identities=24% Similarity=0.236 Sum_probs=40.0
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 013948 189 MQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGL 254 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 254 (433)
+..|++++|+..|++++..+|++..+++.+|.|+.+.|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 345666666666666666666666666666666666666666666666666666666555555543
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.6e-08 Score=80.44 Aligned_cols=124 Identities=16% Similarity=0.069 Sum_probs=105.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 013948 181 FKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSRLGL 254 (433)
Q Consensus 181 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~ 254 (433)
.+.........++...+...+++.+..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. +.+.+++|.
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 3333344446889999999999999999998 5778889999999999999999999999988765 568899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 255 AYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++...|++++|+. .++. +.-.+-.+.++..+|.++...|++++|...++.
T Consensus 94 ~~~~~~~~d~Al~-~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALA-TLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHH-HHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999 8866 344455677888899999999999999888764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.7e-08 Score=92.56 Aligned_cols=113 Identities=13% Similarity=0.201 Sum_probs=90.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.+.++.|++++++..+.+|. +...++.++...++..+|+..+.+++..+|.+..++...+..+...+
T Consensus 182 t~~~~~ai~lle~L~~~~pe-------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE-------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc-------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 46788888888887776553 34557777777788888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKA 273 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~a 273 (433)
+++.|+...++++.+.|+....|+.|+.+|..+|+|+.|+. .++.+
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl-aLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL-ALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH-HHhcC
Confidence 88888888888888888888888888888888888888887 66643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-07 Score=103.51 Aligned_cols=213 Identities=8% Similarity=-0.024 Sum_probs=151.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+++.+.+++..+++..-.. ....+..+-..|.+.|++++|...|... +.+...|..+...|.+.|
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~---------~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G 568 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGF---------DGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHG 568 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCc---------cceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcC
Confidence 577788888777777653221 1334455667778888888888888775 457778888888888888
Q ss_pred cHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHHHHhcc
Q 013948 227 QYAEAVRDCLKSIDI--DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP--NNEAVKENIRMAEQKLREERQRTG 302 (433)
Q Consensus 227 ~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~a~~ 302 (433)
+.++|+..|++..+. .|+. ..+..+-..+.+.|.+++|.. +|+...+..+ .+...+..+..++.+.|+.++|..
T Consensus 569 ~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~-~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~ 646 (857)
T PLN03077 569 KGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLE-YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN 646 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHH-HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888887764 3443 345555566788888888888 8888774332 245677778888888888888888
Q ss_pred cccccCCCccchh----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhh---
Q 013948 303 WDQTTSSSHYSQE----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVS--- 373 (433)
Q Consensus 303 ~~~~~~~~~~~~~----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~a--- 373 (433)
.++.....|.... ...+...++.+.+.... .++++| +++..|..++ ++|...|++++|....+..
T Consensus 647 ~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p-----~~~~~y~ll~-n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 647 FINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDP-----NSVGYYILLC-NLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----CCcchHHHHH-HHHHHCCChHHHHHHHHHHHHc
Confidence 8777643333221 12334446665555444 788999 9999999999 9999999999999887664
Q ss_pred -cCCCCCc
Q 013948 374 -GSDEPGI 380 (433)
Q Consensus 374 -l~l~P~~ 380 (433)
+..+|..
T Consensus 721 g~~k~~g~ 728 (857)
T PLN03077 721 GLTVDPGC 728 (857)
T ss_pred CCCCCCCc
Confidence 5567776
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.6e-08 Score=77.08 Aligned_cols=96 Identities=21% Similarity=0.159 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---cHHHHHHH
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN---YSKAYSRL 252 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 252 (433)
.+++.+|.++-..|+.++|+.+|++++...... ..+++.+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 468899999999999999999999999976544 578999999999999999999999999999898 88889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 013948 253 GLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 253 g~~~~~~g~~~~A~~~~~~~al~ 275 (433)
+.++...|++++|+. ++-.++.
T Consensus 82 Al~L~~~gr~~eAl~-~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALE-WLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHH-HHHHHHH
Confidence 999999999999999 9888775
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.7e-08 Score=88.24 Aligned_cols=115 Identities=16% Similarity=0.102 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHH
Q 013948 193 QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG---NYNDAIEKG 269 (433)
Q Consensus 193 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~ 269 (433)
..+.-+.-++.-+..+|+|+.-|..||.+|+.+|++..|...|.+|+++.|+++..+..+|.+++.+. ...++.. .
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~-l 215 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA-L 215 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH-H
Confidence 46777788888999999999999999999999999999999999999999999999999999987654 3667888 9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 270 FKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 270 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
|+++++++|.+..+...|+..+...|++.+|....+...
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999999999999999999999999999988766543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.3e-08 Score=90.21 Aligned_cols=133 Identities=16% Similarity=0.153 Sum_probs=111.6
Q ss_pred CcchHHHHHHHHHHHHHHHhhcccccc-----chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAY-----NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAA 220 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~-----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 220 (433)
..|+|..|...|++++........... .......++.+++.|+.+.++|.+|+....++|.++|++..++|.+|.
T Consensus 220 K~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~ 299 (397)
T KOG0543|consen 220 KEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQ 299 (397)
T ss_pred hhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 379999999999999987653311110 112234578899999999999999999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
++..+|+|+.|+..|++++++.|+|..+...+..+..+...+.+...+.|.+.+..-+
T Consensus 300 A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 300 ALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999988888777764437888776544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-07 Score=85.65 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHHH
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSRL 252 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 252 (433)
.-.|..|.-++..|+|..|...|..-++..|++ +.++|+||.+++.+|+|+.|...|..+++-.|++ +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 338888999999999999999999999999987 6899999999999999999999999999998875 6889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013948 253 GLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288 (433)
Q Consensus 253 g~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~ 288 (433)
|.+...+|+.++|+. .|+++++..|+...+...-.
T Consensus 222 g~~~~~l~~~d~A~a-tl~qv~k~YP~t~aA~~Ak~ 256 (262)
T COG1729 222 GVSLGRLGNTDEACA-TLQQVIKRYPGTDAAKLAKV 256 (262)
T ss_pred HHHHHHhcCHHHHHH-HHHHHHHHCCCCHHHHHHHH
Confidence 999999999999999 99999999999887765443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-08 Score=73.42 Aligned_cols=67 Identities=22% Similarity=0.391 Sum_probs=39.1
Q ss_pred HHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHH
Q 013948 186 NRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL 252 (433)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 252 (433)
.++...++|++|++++++++.++|+++..|+.+|.++..+|++.+|+..++++++..|+++.+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4455555666666666666666666666666666666666666666666666666666555544433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-07 Score=87.36 Aligned_cols=199 Identities=14% Similarity=0.128 Sum_probs=135.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--CC----HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG--NN----AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la~ 220 (433)
.++|++|.+.|.++.+..-... .....+..+...+.++... ++++|+.+|++|+.+.- ++ +.++..+|.
T Consensus 48 ~~~~~~A~~ay~kAa~~~~~~~----~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~ 122 (282)
T PF14938_consen 48 AKDWEKAAEAYEKAADCYEKLG----DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAE 122 (282)
T ss_dssp TT-CHHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HhccchhHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7899999999999998876542 1233456666666666555 99999999999998732 22 568999999
Q ss_pred HHHHh-hcHHHHHHHHHHHHhcCC--C----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC----CH---HHHHH
Q 013948 221 AYTQI-HQYAEAVRDCLKSIDIDP--N----YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN----NE---AVKEN 286 (433)
Q Consensus 221 ~~~~~-~~~~~A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~----~~---~~~~~ 286 (433)
+|... |++++|+++|++|+.+.. + -..++..+|.++..+|+|++|+. .|+++....-+ .. ..+..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~-~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIE-IYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHH-HHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHhhcccccchhHHHHHHH
Confidence 99999 999999999999998832 1 24677889999999999999999 99999875322 12 34556
Q ss_pred HHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccc--cCCChh
Q 013948 287 IRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQ--AQPSQS 364 (433)
Q Consensus 287 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~--~~g~~~ 364 (433)
.+.|+...|+...|...+... ...+|+-...........+- .++. ....+.
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~--------------------------~~~~~~F~~s~E~~~~~~l~-~A~~~~D~e~f~ 254 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERY--------------------------CSQDPSFASSREYKFLEDLL-EAYEEGDVEAFT 254 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH--------------------------GTTSTTSTTSHHHHHHHHHH-HHHHTT-CCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH--------------------------HhhCCCCCCcHHHHHHHHHH-HHHHhCCHHHHH
Confidence 777888888888877765532 22334332334444555554 4433 345678
Q ss_pred hHHHHHhhhcCCCC
Q 013948 365 RQGEDSNVSGSDEP 378 (433)
Q Consensus 365 ~A~~~~~~al~l~P 378 (433)
+|+..|.+.-.+||
T Consensus 255 ~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 255 EAVAEYDSISRLDN 268 (282)
T ss_dssp HHCHHHTTSS---H
T ss_pred HHHHHHcccCccHH
Confidence 88888877766654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.3e-07 Score=86.62 Aligned_cols=224 Identities=9% Similarity=0.063 Sum_probs=162.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-AVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~ 225 (433)
.|+|.+|+....+.-+..+.. .-.+..-+......|+++.|=.++.++-+.-+++ ......++.++...
T Consensus 97 eG~~~qAEkl~~rnae~~e~p----------~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP----------VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch----------HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 599999999998866654432 4556666777889999999999999999984444 56677889999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC----------------------------
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD---------------------------- 277 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~---------------------------- 277 (433)
|++..|.....+++++.|.++.+....-.+|...|+|.+... .+.+.-+-.
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~-~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLA-ILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHH-HHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999998887 544433221
Q ss_pred --------------CCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhh---hhcCCCCCCCCCcc--cccCCC
Q 013948 278 --------------PNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQ---STGGFRSHGTPPSF--TMPFNT 338 (433)
Q Consensus 278 --------------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~--al~~~p 338 (433)
.+++.....++.-+..+|.+++|........+...+...-. ....+++..-+... .+...|
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred hHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCC
Confidence 11233444444445555666666655444433222222111 12224444444434 677778
Q ss_pred CCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCcccccccc
Q 013948 339 NALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGIRIGGNIN 387 (433)
Q Consensus 339 ~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~ 387 (433)
+++..+..+| .++...+.+.+|...++.|++..|+......+.
T Consensus 326 -----~~p~L~~tLG-~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la 368 (400)
T COG3071 326 -----EDPLLLSTLG-RLALKNKLWGKASEALEAALKLRPSASDYAELA 368 (400)
T ss_pred -----CChhHHHHHH-HHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHH
Confidence 8899999999 999999999999999999999999984443333
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-07 Score=86.60 Aligned_cols=96 Identities=15% Similarity=0.044 Sum_probs=87.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 223 (433)
.|+|++|+..|++.+..+|++ +..+.+++.+|.+++..|++++|+..|.+++...|++ +.+++.+|.++.
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s-------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~ 228 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDS-------TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ 228 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH
Confidence 489999999999999999986 3336799999999999999999999999999998875 789999999999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCcHHHH
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNYSKAY 249 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~~~~~ 249 (433)
.+|++++|...|+++++..|+...+.
T Consensus 229 ~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 229 DKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 99999999999999999999987543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-08 Score=72.55 Aligned_cols=67 Identities=25% Similarity=0.398 Sum_probs=61.7
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013948 222 YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRM 289 (433)
Q Consensus 222 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~ 289 (433)
++..|++++|+..|++++..+|++..+++.+|.++...|++++|.. .+++++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~-~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEE-LLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHH-HHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCcCHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999 999999999999888777664
|
... |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.5e-07 Score=90.30 Aligned_cols=190 Identities=14% Similarity=0.178 Sum_probs=132.1
Q ss_pred CCchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccC
Q 013948 33 VDLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEE 112 (433)
Q Consensus 33 ~~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (433)
.+.+.|++|+..-.+.+.+.|++++++.+.-....-...++.+.... ..+ +.+ ..
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~i--kk~-----------~~~-----~~------- 77 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLI--KKN-----------GAL-----LV------- 77 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHH--Hhc-----------chh-----hh-------
Confidence 47789999999999999999999988776665555566666665311 000 000 00
Q ss_pred CCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc
Q 013948 113 PDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ 192 (433)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~ 192 (433)
...+ .+..++- .| .++..++|+..++ .++ +.+ .......|+++++.|
T Consensus 78 --------~~~~-~fEKAYc---~Y--------rlnk~Dealk~~~-~~~--~~~----------~~ll~L~AQvlYrl~ 124 (652)
T KOG2376|consen 78 --------INSF-FFEKAYC---EY--------RLNKLDEALKTLK-GLD--RLD----------DKLLELRAQVLYRLE 124 (652)
T ss_pred --------cchh-hHHHHHH---HH--------HcccHHHHHHHHh-ccc--ccc----------hHHHHHHHHHHHHHh
Confidence 0000 0111111 11 2578888888877 222 221 346777889999999
Q ss_pred CHHHHHHHHHHHHHhcCC-------------------------------CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 193 QYSDAIELYSFAIALCGN-------------------------------NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 193 ~~~~A~~~~~~al~~~p~-------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
+|++|++.|+..++.+.+ +.+.+||.|.++...|+|.+|++.+++++++
T Consensus 125 ~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 125 RYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI 204 (652)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999888644322 3457999999999999999999999999544
Q ss_pred C-------CC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 242 D-------PN--------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 242 ~-------p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
- .. -..+...|+.++..+|+.++|.. .|...++.+|.|.
T Consensus 205 ~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~-iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 205 CREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS-IYVDIIKRNPADE 258 (652)
T ss_pred HHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHhcCCCc
Confidence 1 11 13467779999999999999999 9999999887764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-08 Score=72.25 Aligned_cols=71 Identities=23% Similarity=0.468 Sum_probs=65.6
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013948 218 RAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRM 289 (433)
Q Consensus 218 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~ 289 (433)
|..+|...++|++|+.++++++.++|+++..|+.+|.++..+|++.+|.. .|+++++..|+++.+....+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~-~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALE-DLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHH-HHHHHHHHCCCcHHHHHHHHh
Confidence 35689999999999999999999999999999999999999999999999 999999999999887665543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-07 Score=75.56 Aligned_cols=106 Identities=23% Similarity=0.284 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 251 (433)
+..++..|...+..|+|.+|++.|+......|.. ..+...+|.+|++.+++++|+..+++.++++|.+ +.+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 6789999999999999999999999999988865 6789999999999999999999999999999987 478999
Q ss_pred HHHHHHHcCC---------------HHHHHHHHHHHHHhhCCCCHHHH
Q 013948 252 LGLAYYAQGN---------------YNDAIEKGFKKALQLDPNNEAVK 284 (433)
Q Consensus 252 lg~~~~~~g~---------------~~~A~~~~~~~al~~~p~~~~~~ 284 (433)
.|.+++.+.. ..+|.. .|++.++..|++.-+-
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~-~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFR-DFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHH-HHHHHHHHCcCChhHH
Confidence 9999999887 889999 9999999999986543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.3e-09 Score=93.83 Aligned_cols=213 Identities=12% Similarity=0.040 Sum_probs=155.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013948 143 GNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAY 222 (433)
Q Consensus 143 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 222 (433)
.+..+|.|++|+.+|.+++..+|.+ +-.+.+.+..|++.+.|..|...+..|+.++.....+|..+|.+.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~N----------pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHN----------PVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCC----------ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 3334899999999999999999987 778889999999999999999999999999988899999999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHH---------HHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENI---------RMAEQK 293 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l---------~~~~~~ 293 (433)
..+|...+|.+.|+.+|++.|++.+..-.++.+-. ..++.- +.+-.|...++..+. |.....
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I-----~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk 246 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPKNIELKKSLARINS----LRERKI-----ATKSTPGFTPARQGMIQILPIKKPGYKFSK 246 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhH-----HhhcCCCCCccccchhhhccccCcchhhhh
Confidence 99999999999999999999997765554444332 222221 222233333332222 444556
Q ss_pred HHHHHHhcccccccCCCccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhH
Q 013948 294 LREERQRTGWDQTTSSSHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQ 366 (433)
Q Consensus 294 ~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A 366 (433)
.|.+..++.++-.......... ...|..-.++++++... ++..+| ....++-..+ .+---.|...++
T Consensus 247 ~~~~~~~i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~-----s~~~~~s~~~-~A~T~~~~~~E~ 320 (536)
T KOG4648|consen 247 KAMRSVPVVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKP-----TPMPDTSGPP-KAETIAKTSKEV 320 (536)
T ss_pred hhccccceeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCC-----CcCcccCCCc-hhHHHHhhhhhc
Confidence 6777777776554332111111 34466667888888777 777777 4444455555 555566788899
Q ss_pred HHHHhhhcCCCCCc
Q 013948 367 GEDSNVSGSDEPGI 380 (433)
Q Consensus 367 ~~~~~~al~l~P~~ 380 (433)
...++.++.+.|.+
T Consensus 321 K~~~~T~~~~~P~~ 334 (536)
T KOG4648|consen 321 KPTKQTAVKVAPAV 334 (536)
T ss_pred Ccchhheeeecccc
Confidence 99999999999998
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-07 Score=77.87 Aligned_cols=90 Identities=13% Similarity=0.028 Sum_probs=84.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|..+|+-....+|.+ .+.|+.||-|+...++|++|+..|..+..++++++...+..|.|++.+|
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~n----------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFYN----------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcCc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 599999999999999998887 8889999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSK 247 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~ 247 (433)
+.+.|..+|..++. .|.+..
T Consensus 120 ~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 120 KAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred CHHHHHHHHHHHHh-CcchHH
Confidence 99999999999999 465443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-08 Score=86.65 Aligned_cols=98 Identities=35% Similarity=0.555 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+.-+...|+.++...+|..|+.+|.++|.++|..+.+|.+++.|++++.+|+.+...+.+++.++|+...+++.+|.+..
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 55677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhh
Q 013948 258 AQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~ 276 (433)
....|++|+. .++++..+
T Consensus 90 ~s~~~~eaI~-~Lqra~sl 107 (284)
T KOG4642|consen 90 QSKGYDEAIK-VLQRAYSL 107 (284)
T ss_pred hhccccHHHH-HHHHHHHH
Confidence 9999999999 99999655
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.9e-07 Score=85.22 Aligned_cols=152 Identities=26% Similarity=0.443 Sum_probs=121.7
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCH
Q 013948 115 STGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQY 194 (433)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 194 (433)
..|...+ .....+.+.|+|.+..+...+.+.--.+++ +|..++..+ .+...+.-+..-|+-|++.++|
T Consensus 30 ~k~~~~D----ew~kEm~k~PfFMt~~p~~gd~~~~~~~Lq----slK~da~E~----ep~E~Aen~KeeGN~~fK~Kry 97 (390)
T KOG0551|consen 30 RKGFHED----EWEKEMNKVPFFMTRAPSEGDPNPDNVCLQ----SLKADAEEG----EPHEQAENYKEEGNEYFKEKRY 97 (390)
T ss_pred cCCCCHH----HHHHHHhcCcHHHhcCCCCCCCCccHHHHH----HhhhccccC----ChHHHHHHHHHHhHHHHHhhhH
Confidence 4455544 466778899999988887665544444433 333343221 1223578888999999999999
Q ss_pred HHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013948 195 SDAIELYSFAIALCGNN----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270 (433)
Q Consensus 195 ~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 270 (433)
..|+..|.++|+....+ +.+|.|+|.|...+|+|-.|+..+.+++.++|.+..++++-+.|++.+.++.+|.. |.
T Consensus 98 k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~n-w~ 176 (390)
T KOG0551|consen 98 KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVN-WC 176 (390)
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHH-HH
Confidence 99999999999986655 57899999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHhhCCC
Q 013948 271 KKALQLDPN 279 (433)
Q Consensus 271 ~~al~~~p~ 279 (433)
+..+.++..
T Consensus 177 ee~~~~d~e 185 (390)
T KOG0551|consen 177 EEGLQIDDE 185 (390)
T ss_pred hhhhhhhHH
Confidence 887766543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.7e-07 Score=99.88 Aligned_cols=228 Identities=11% Similarity=0.008 Sum_probs=161.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--------CHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN--------NAVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l 218 (433)
.|++++|...+++++......+. ......++..+|.+++..|++++|...+.+++..... ...++..+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~----~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDV----YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcc----hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 58999999999999987654321 1223557788999999999999999999999886321 23456678
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC---HHHHHH----
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDIDPN-----YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN---EAVKEN---- 286 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~---~~~~~~---- 286 (433)
|.++...|++++|...+.+++.+... ...++..+|.++...|++++|.. .+.++..+.+.. ......
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~-~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARR-YLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHhcccccHhHhhHHHHH
Confidence 99999999999999999999886332 35567778999999999999999 999998764322 111111
Q ss_pred HHHHHHHHHHHHHhcccccccCCCc--c--------chhhhhhhcCCCCCCCCCcc--cccCCC-CCCCccHHHHHHHHh
Q 013948 287 IRMAEQKLREERQRTGWDQTTSSSH--Y--------SQESNQSTGGFRSHGTPPSF--TMPFNT-NALPTDIASMLMNMA 353 (433)
Q Consensus 287 l~~~~~~~~~~~~a~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~A~~~~--al~~~p-~~~~~~~~~a~~~la 353 (433)
....+...|+.+.+..+........ . ...+..+...|++++|+..+ ++.... ...+.+...++..+|
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 1122233456666666543322111 0 11244567779999999888 444321 011225667888899
Q ss_pred hcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 354 SNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.++...|+.++|...+.+|+++....
T Consensus 739 -~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 739 -QLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred -HHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999987665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.6e-08 Score=92.41 Aligned_cols=201 Identities=17% Similarity=0.148 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--CC----HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-----CC-c
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCG--NN----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID-----PN-Y 245 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~-~ 245 (433)
+..+..-|.+|...++|++|.++|.++....- ++ ...+...+.++.+. ++++|+.+|++++.+. |. -
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 33444456777778899999999998876532 12 45677777777666 9999999999999873 11 2
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhh
Q 013948 246 SKAYSRLGLAYYAQ-GNYNDAIEKGFKKALQLDPN--N----EAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQ 318 (433)
Q Consensus 246 ~~~~~~lg~~~~~~-g~~~~A~~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 318 (433)
..++..+|.+|... |++++|++ +|++|+.+... . ...+..++.++..+|++++|...+.........
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~-~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~----- 187 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIE-YYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE----- 187 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHH-HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc-----
Confidence 57889999999998 99999999 99999987321 2 346778899999999999999987754321100
Q ss_pred hhcCCCCCCCCCccccc-CCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc--cccccccccc----c
Q 013948 319 STGGFRSHGTPPSFTMP-FNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI--RIGGNINLNF----G 391 (433)
Q Consensus 319 ~~~~~~~~~A~~~~al~-~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~~~~l----~ 391 (433)
.. ... .....++..+ .++...|+...|...+++....+|.+ +.-..++-.+ .
T Consensus 188 ---------------~~l~~~-----~~~~~~l~a~-l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 188 ---------------NNLLKY-----SAKEYFLKAI-LCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp ---------------HCTTGH-----HHHHHHHHHH-HHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred ---------------ccccch-----hHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 00 112 3334566667 78999999999999999999999998 3334444333 1
Q ss_pred cCCcHHHHHHHHHHH
Q 013948 392 ENMPEDITGALRSMM 406 (433)
Q Consensus 392 ~~~~~~~~~a~~~~~ 406 (433)
..+.+.+..++..+.
T Consensus 247 ~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYD 261 (282)
T ss_dssp TT-CCCHHHHCHHHT
T ss_pred hCCHHHHHHHHHHHc
Confidence 567776666666554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-07 Score=79.13 Aligned_cols=106 Identities=20% Similarity=0.299 Sum_probs=91.7
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 013948 140 MPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRA 219 (433)
Q Consensus 140 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 219 (433)
.+......|+|++|..-|+.||.+.|... .....-.|.+.|.++++.+.++.|+..+.++|+++|....++..+|
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~-----~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTS-----TEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCcccc-----HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 33334457999999999999999988762 2334556778999999999999999999999999999999999999
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCcHHHHH
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDPNYSKAYS 250 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 250 (433)
.+|.++..|++|+..|.++++.+|....+.-
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence 9999999999999999999999998765443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7e-06 Score=76.94 Aligned_cols=75 Identities=9% Similarity=-0.018 Sum_probs=52.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHH
Q 013948 269 GFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASM 348 (433)
Q Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a 348 (433)
..++.++..|+++..+..||..+.+.+.|.+|..+.+. +++..| ..+.
T Consensus 316 ~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~lea--------------------------Al~~~~------s~~~ 363 (400)
T COG3071 316 AAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEA--------------------------ALKLRP------SASD 363 (400)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHH--------------------------HHhcCC------Chhh
Confidence 44455555566666677777777777777766666552 455555 3456
Q ss_pred HHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 349 LMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 349 ~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
+..+| .++..+|+..+|...++.++-+
T Consensus 364 ~~~la-~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 364 YAELA-DALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHH-HHHHHcCChHHHHHHHHHHHHH
Confidence 77788 9999999999999999998743
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.3e-07 Score=74.01 Aligned_cols=110 Identities=20% Similarity=0.189 Sum_probs=97.6
Q ss_pred CChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHH
Q 013948 118 VSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDA 197 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A 197 (433)
.+...++....+++.. |+|++|++.|+.+....|.. +....+...+|.+++..+++++|
T Consensus 8 ~~~~~ly~~a~~~l~~--------------~~Y~~A~~~le~L~~ryP~g-------~ya~qAqL~l~yayy~~~~y~~A 66 (142)
T PF13512_consen 8 KSPQELYQEAQEALQK--------------GNYEEAIKQLEALDTRYPFG-------EYAEQAQLDLAYAYYKQGDYEEA 66 (142)
T ss_pred CCHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHHhcCCCC-------cccHHHHHHHHHHHHHccCHHHH
Confidence 4567788888888877 99999999999999998875 44478899999999999999999
Q ss_pred HHHHHHHHHhcCCCH---HHHHHHHHHHHHhhc---------------HHHHHHHHHHHHhcCCCcHHH
Q 013948 198 IELYSFAIALCGNNA---VYYSNRAAAYTQIHQ---------------YAEAVRDCLKSIDIDPNYSKA 248 (433)
Q Consensus 198 ~~~~~~al~~~p~~~---~~~~~la~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~ 248 (433)
+..+++-|+++|.++ .+++.+|.+++.+.. ..+|+..|+++++..|++..+
T Consensus 67 ~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 67 IAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999999999999884 689999999999877 889999999999999998654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.9e-07 Score=76.60 Aligned_cols=98 Identities=29% Similarity=0.352 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--
Q 013948 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ----------YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN-- 261 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-- 261 (433)
|+.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|+.||.++|+...+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 7889999999999999999999999999988755 4678888999999999999999999999988764
Q ss_pred ---------HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013948 262 ---------YNDAIEKGFKKALQLDPNNEAVKENIRMAEQ 292 (433)
Q Consensus 262 ---------~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (433)
|++|.. +|++|...+|++...+..|..+..
T Consensus 87 ~d~~~A~~~F~kA~~-~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 87 PDTAEAEEYFEKATE-YFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp --HHHHHHHHHHHHH-HHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHH-HHHHHHhcCCCcHHHHHHHHHHHh
Confidence 889999 999999999999998888877643
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.7e-07 Score=81.47 Aligned_cols=148 Identities=20% Similarity=0.243 Sum_probs=129.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
..+|..|+.++..-.+..|.+ ...+..+|.||+...+|..|.++|++.-.+.|......+..+..+++.+
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~----------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRS----------RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccc----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 368889999988888887766 6788899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHh----------c--------------------CC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSID----------I--------------------DP--NYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 227 ~~~~A~~~~~~al~----------~--------------------~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al 274 (433)
.+..|+........ + -| +.+....+.|.+.++.|+|++|++ -|+.++
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq-kFqaAl 171 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ-KFQAAL 171 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH-HHHHHH
Confidence 99998877653322 1 13 456778889999999999999999 999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 275 QLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 275 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
+...-++-+-++++.++...+++..|..+..
T Consensus 172 qvsGyqpllAYniALaHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLALAHYSSRQYASALKHIS 202 (459)
T ss_pred hhcCCCchhHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999999999999999988754
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.6e-08 Score=91.82 Aligned_cols=70 Identities=17% Similarity=0.083 Sum_probs=64.0
Q ss_pred chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q 013948 173 NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVY---YSNRAAAYTQIHQYAEAVRDCLKSIDID 242 (433)
Q Consensus 173 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~ 242 (433)
..|+.+.+|+++|..++..|+|++|+..|+++|+++|++..+ |+++|.+|..+|++++|+.++++|+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 467789999999999999999999999999999999999854 9999999999999999999999999983
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.4e-07 Score=87.75 Aligned_cols=119 Identities=18% Similarity=0.117 Sum_probs=108.1
Q ss_pred HHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 013948 186 NRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDA 265 (433)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 265 (433)
..+...++++.|+..|++..+.+|+ +...++.++...++..+|+..+.+++..+|.+...+...+..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 4455678999999999999888874 5666899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 266 IEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 266 ~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
+. ..++++.+.|.+...|..|+.+|..+|+++.|......+.
T Consensus 254 L~-iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 254 LE-IAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HH-HHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99 9999999999999999999999999999999987655433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-06 Score=68.45 Aligned_cols=103 Identities=25% Similarity=0.342 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc----HHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY----SKAYSRLG 253 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg 253 (433)
...+-..|..+...|+.+.|++.|.+++.+.|..+.+|++++.++.-+|+.++|+..+++++++.... -.++...|
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 44566678888899999999999999999999999999999999999999999999999999996543 35788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 254 LAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
.+|..+|+-+.|.. .|+.+-++.....
T Consensus 123 ~lyRl~g~dd~AR~-DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 123 LLYRLLGNDDAARA-DFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHhCchHHHHH-hHHHHHHhCCHHH
Confidence 99999999999999 9999988765443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=9e-07 Score=79.60 Aligned_cols=97 Identities=13% Similarity=0.142 Sum_probs=89.5
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQ 224 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~ 224 (433)
|+|..|...|+..++.+|++ ...+.++|.||.+++.+|+|+.|...|..+++-.|++ ++.++.+|.|...
T Consensus 155 gdy~~A~~~F~~fi~~YP~s-------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~ 227 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNS-------TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR 227 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCC-------cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 89999999999999999986 4458899999999999999999999999999998876 6899999999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHH
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSR 251 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~ 251 (433)
+|+.++|-..|+++++..|..+.+...
T Consensus 228 l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 228 LGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred hcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999998776543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-07 Score=69.51 Aligned_cols=66 Identities=21% Similarity=0.354 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-------GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
..+.++..+|.++...|+|++|+.+|++++.+. |..+.+++++|.++..+|++++|++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 346677777777777777777777777777551 112456777777777777777777777777664
|
... |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-07 Score=90.73 Aligned_cols=118 Identities=35% Similarity=0.571 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+...-..+...+..+.|+.|+..|.+||+++|+++.++-+++.++.+.+++..|+..+.+|++++|....+|++.|.++.
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 33455567788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
.++++.+|.. .|++...+.|+++.+...+..|.....+
T Consensus 84 ~l~~~~~A~~-~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 84 ALGEFKKALL-DLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred hHHHHHHHHH-HHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999998888655443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-07 Score=86.41 Aligned_cols=142 Identities=15% Similarity=0.139 Sum_probs=115.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..+.+. .+ .+.....-.++...++++.|.+.++.+-+.+.+..-+....|++....|
T Consensus 115 ~~~~~~AL~~l~~~-----~~----------lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 115 EGDYEEALKLLHKG-----GS----------LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG 179 (290)
T ss_dssp CCHHHHHHCCCTTT-----TC----------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHcc-----Cc----------ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC
Confidence 58899888877664 11 5666777789999999999999999998888776666666677777777
Q ss_pred --cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH-HHhccc
Q 013948 227 --QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE-RQRTGW 303 (433)
Q Consensus 227 --~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-~~a~~~ 303 (433)
.+.+|...|+......+..+..+..++.++..+|+|++|.. .+++++..+|+++.++.++..+...+|+. +...++
T Consensus 180 ~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~-~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEE-LLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHH-HHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 59999999999888888999999999999999999999999 99999999999999999999999999987 333334
Q ss_pred c
Q 013948 304 D 304 (433)
Q Consensus 304 ~ 304 (433)
.
T Consensus 259 l 259 (290)
T PF04733_consen 259 L 259 (290)
T ss_dssp H
T ss_pred H
Confidence 3
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.6e-06 Score=73.95 Aligned_cols=190 Identities=23% Similarity=0.285 Sum_probs=154.0
Q ss_pred cchHHHHHHHHHHHHH--HHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHH
Q 013948 147 PSQVDKASRIFHDAIN--EMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAA-AYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~ 223 (433)
.+++..+...+...+. ..+.. ...+...+......+++..++..+.+++...+.........+. ++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 72 LGRLEEALELLEKALELELLPNL----------AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred cccHHHHHHHHHHHHhhhhccch----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 4778888888888876 33333 7788889999999999999999999999988877666666666 899
Q ss_pred HhhcHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHH
Q 013948 224 QIHQYAEAVRDCLKSIDIDP---NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN-NEAVKENIRMAEQKLREERQ 299 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~ 299 (433)
..|+++.|+..+.+++..+| .....+...+..+...++++.++. .+.+++...+. ....+..++.++...+....
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 142 ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE-LLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH-HHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence 99999999999999988877 466777777888889999999999 99999999999 68888899988888886666
Q ss_pred hcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 300 RTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 300 a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
+...... ++...| .....+..++ ..+...+..+++...+.+++..+|.
T Consensus 221 a~~~~~~--------------------------~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 221 ALEYYEK--------------------------ALELDP-----DNAEALYNLA-LLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHH--------------------------HHhhCc-----ccHHHHhhHH-HHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 6555442 455566 5556677777 5555778899999999999999887
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.2e-07 Score=72.27 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC---CHHHHHH
Q 013948 213 VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN---NEAVKEN 286 (433)
Q Consensus 213 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~---~~~~~~~ 286 (433)
.++|++|.++-.+|+.++|+..|++++...... ..+++.+|.++..+|++++|+. .+++++...|+ +..+...
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~-~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALA-LLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCCCccccHHHHHH
Confidence 578999999999999999999999999986544 6799999999999999999999 99999999888 7888889
Q ss_pred HHHHHHHHHHHHHhcccccc
Q 013948 287 IRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 287 l~~~~~~~~~~~~a~~~~~~ 306 (433)
++.++...|+.++|..+...
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999888653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.8e-07 Score=88.64 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=67.1
Q ss_pred hcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Q 013948 207 LCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKA---YSRLGLAYYAQGNYNDAIEKGFKKALQLD 277 (433)
Q Consensus 207 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~~al~~~ 277 (433)
.+|+++..|+++|.+|..+|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+. ++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla-~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAAD-CLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhc
Confidence 589999999999999999999999999999999999999855 9999999999999999999 999999973
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.3e-06 Score=77.59 Aligned_cols=248 Identities=11% Similarity=0.114 Sum_probs=171.8
Q ss_pred HHHHHHHHHHhhhhCCCCCCCchhHHHHHH-----HHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCC
Q 013948 14 RRIVRSFLHFLDSVEPAPGVDLEGLEVARE-----CLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSS 88 (433)
Q Consensus 14 ~~~~~~~~~~l~~~~~~~~~~~~~~e~A~~-----~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (433)
+-|+..++.|=++.- +.+.+|++|. -|++-+.-+|-|.|++..+-.|.+....-+...+--
T Consensus 280 eeL~k~~~~fEKqfG-----d~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~y--------- 345 (677)
T KOG1915|consen 280 EELYKKYTAFEKQFG-----DKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETY--------- 345 (677)
T ss_pred HHHHHHHHHHHHHhc-----chhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHH---------
Confidence 448888888887763 4455666654 488888999999988776666665553333222200
Q ss_pred CcccCCCccchhhhcccCcccccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhcc
Q 013948 89 SSAQNMDAKFSEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSG 168 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 168 (433)
.-+...+.+ ..+..+| .++.-....+..|.. ....|.+.+.+.|+.+|++.|..
T Consensus 346 ----------ErAIanvpp-~~ekr~W---------~RYIYLWinYalyeE-----le~ed~ertr~vyq~~l~lIPHk- 399 (677)
T KOG1915|consen 346 ----------ERAIANVPP-ASEKRYW---------RRYIYLWINYALYEE-----LEAEDVERTRQVYQACLDLIPHK- 399 (677)
T ss_pred ----------HHHHccCCc-hhHHHHH---------HHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHhhcCcc-
Confidence 000000100 1111112 122111111111110 02478999999999999998875
Q ss_pred ccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHH
Q 013948 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKA 248 (433)
Q Consensus 169 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 248 (433)
....+..|...|....++.+...|...+-.||-.+|.+-. .-..-.+-.++++++.+...|++-|+.+|.+..+
T Consensus 400 -----kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl-Fk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 400 -----KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL-FKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred -----cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH-HHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 5777899999999999999999999999999999998743 3334456778999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHHHhcccccccC
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA--EQKLREERQRTGWDQTTS 308 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~ 308 (433)
|...|..-..+|+.+.|.. .|+-|+....-+..-...-+.+ -...|.++.+...++...
T Consensus 474 W~kyaElE~~LgdtdRaRa-ifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARA-IFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHHHHHhhhHHHHHH-HHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 9999999999999999999 9999998765554433333333 345677788777776544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.9e-08 Score=70.76 Aligned_cols=67 Identities=34% Similarity=0.643 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDID-------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 209 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
|+-..++.++|.+|..+|+|++|+.+|++++.+. |....++.++|.++..+|++++|+. ++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~-~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALE-YYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhh
Confidence 4456789999999999999999999999999762 2236789999999999999999999 99999976
|
... |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.1e-06 Score=83.49 Aligned_cols=193 Identities=12% Similarity=0.046 Sum_probs=125.8
Q ss_pred cCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC--
Q 013948 208 CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-DPN-----YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN-- 279 (433)
Q Consensus 208 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~-- 279 (433)
+|++..-|..+.. ...|+..+-+..|..|++. +|. ....|..+|..|...|+.+.|.. .|+++++.+=.
T Consensus 345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv-ifeka~~V~y~~v 421 (835)
T KOG2047|consen 345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV-IFEKATKVPYKTV 421 (835)
T ss_pred CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH-HHHHhhcCCccch
Confidence 4555555555433 3456778888888877754 554 35789999999999999999999 99999987532
Q ss_pred --CHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh-----------hhhhhcC-------------CCCCCCCCcc-
Q 013948 280 --NEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQE-----------SNQSTGG-------------FRSHGTPPSF- 332 (433)
Q Consensus 280 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~~-------------~~~~~A~~~~- 332 (433)
-..+|..-|..-....+.+.|....+.+...|.... ...+... |-++.....|
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 256788888777778888888888777765444322 0111111 3333333334
Q ss_pred -cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc---cccccccc----ccccCCcHHHHHHHHH
Q 013948 333 -TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI---RIGGNINL----NFGENMPEDITGALRS 404 (433)
Q Consensus 333 -al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~~~----~l~~~~~~~~~~a~~~ 404 (433)
.+++-- --|....|.| ..+....-++++.+.|++.+.+-|=- ..+...+. .+|+...|.....++.
T Consensus 502 riidLri-----aTPqii~NyA-mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 502 RIIDLRI-----ATPQIIINYA-MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHhc-----CCHHHHHHHH-HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 555554 5567788888 88888888999999999988885432 22222221 2236667766666666
Q ss_pred HHhhc
Q 013948 405 MMEMF 409 (433)
Q Consensus 405 ~~~~~ 409 (433)
..+.+
T Consensus 576 aL~~C 580 (835)
T KOG2047|consen 576 ALDGC 580 (835)
T ss_pred HHhcC
Confidence 65543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.1e-07 Score=85.47 Aligned_cols=189 Identities=16% Similarity=0.133 Sum_probs=136.8
Q ss_pred HHHccCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 013948 188 VMQSQQYSDAIELYSFAIALCGNNA-VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAI 266 (433)
Q Consensus 188 ~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 266 (433)
+....+|..|+..++-.+..+.+.. ..-..+|.|++++|+|++|+..|..+...+.-+.+.+.+|+.|++-+|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 3456789999999988876654433 566778999999999999999999999988778899999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh--hhhhhcCCCCCCCCCcc--cccCCCCCCC
Q 013948 267 EKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQE--SNQSTGGFRSHGTPPSF--TMPFNTNALP 342 (433)
Q Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~--al~~~p~~~~ 342 (433)
. ...+ .|+++-....+-.+-.++++.++-..+.........+.. +....-.-+|++|+..| .+..+|
T Consensus 112 ~-~~~k----a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~---- 182 (557)
T KOG3785|consen 112 S-IAEK----APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP---- 182 (557)
T ss_pred H-HHhh----CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh----
Confidence 8 6555 456655444444444556655544444333332222211 33333345677888888 777888
Q ss_pred ccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCcccccccc
Q 013948 343 TDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGIRIGGNIN 387 (433)
Q Consensus 343 ~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~ 387 (433)
+....-..+| .+|..+.=++-+.+...--+..-|+....-|+.
T Consensus 183 -ey~alNVy~A-LCyyKlDYydvsqevl~vYL~q~pdStiA~NLk 225 (557)
T KOG3785|consen 183 -EYIALNVYMA-LCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLK 225 (557)
T ss_pred -hhhhhHHHHH-HHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHH
Confidence 7777777788 788888888888888888888888884444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-05 Score=70.63 Aligned_cols=167 Identities=16% Similarity=0.142 Sum_probs=136.4
Q ss_pred CCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHH
Q 013948 117 GVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSD 196 (433)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 196 (433)
..+..+++......+.. |+|++|+..|+++...+|.. +....+...++..+++.+++++
T Consensus 31 ~~p~~~LY~~g~~~L~~--------------gn~~~A~~~fe~l~~~~p~s-------~~~~qa~l~l~yA~Yk~~~y~~ 89 (254)
T COG4105 31 NLPASELYNEGLTELQK--------------GNYEEAIKYFEALDSRHPFS-------PYSEQAQLDLAYAYYKNGEYDL 89 (254)
T ss_pred CCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCC-------cccHHHHHHHHHHHHhcccHHH
Confidence 34677888888888877 99999999999999988875 4447899999999999999999
Q ss_pred HHHHHHHHHHhcCCCH---HHHHHHHHHHHHh--------hcHHHHHHHHHHHHhcCCCcH-----------------HH
Q 013948 197 AIELYSFAIALCGNNA---VYYSNRAAAYTQI--------HQYAEAVRDCLKSIDIDPNYS-----------------KA 248 (433)
Q Consensus 197 A~~~~~~al~~~p~~~---~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~-----------------~~ 248 (433)
|+...++-+.+.|+++ .+++..|.+++.. .-..+|+..++..+...|+.. .-
T Consensus 90 A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 90 ALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 9999999999999874 5677788887643 224678999999999999842 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHHHHhccccc
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN---EAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
-+..|..|.+.|.|..|+. -++.+++..|+. .+++..+..+|..+|-.++|.....
T Consensus 170 Em~IaryY~kr~~~~AA~n-R~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 170 EMAIARYYLKRGAYVAAIN-RFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHHHHhcChHHHHH-HHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 2346888999999999999 999999987765 4567777888889998888877655
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-05 Score=77.06 Aligned_cols=318 Identities=11% Similarity=0.052 Sum_probs=219.0
Q ss_pred HHHHhhhhCCCCCCCchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhh-cccCCCCCCCCcccCCCccc
Q 013948 20 FLHFLDSVEPAPGVDLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDAL-GIKSDNAPSSSSAQNMDAKF 98 (433)
Q Consensus 20 ~~~~l~~~~~~~~~~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 98 (433)
=++||.-+.+...+..+.+|.|...|.+++.---.- ....-+++.|..++...-. +++ ... .. ...+.
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tv----rDFt~ifd~Ya~FEE~~~~~~me-~a~----~~-~~n~e- 314 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTV----RDFTQIFDAYAQFEESCVAAKME-LAD----EE-SGNEE- 314 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheeh----hhHHHHHHHHHHHHHHHHHHHHh-hhh----hc-ccChh-
Confidence 356777777778889999999999999998643222 1223445555555554331 111 000 00 00000
Q ss_pred hhhhcccCcccccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCC--------------CCcchHHHHHHHHHHHHHH-
Q 013948 99 SEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGN--------------DDPSQVDKASRIFHDAINE- 163 (433)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~g~~~~A~~~~~~al~~- 163 (433)
--...+--+..+...+...+.+.+..-.- .-.|+..+-+..|.+|++.
T Consensus 315 -----------------d~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~v 377 (835)
T KOG2047|consen 315 -----------------DDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTV 377 (835)
T ss_pred -----------------hhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHcc
Confidence 01122222444455554444433321110 0237788888889888764
Q ss_pred HhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 013948 164 MEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----AVYYSNRAAAYTQIHQYAEAVRDCLKSI 239 (433)
Q Consensus 164 ~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al 239 (433)
+|... .......|..+|..|...|+.+.|...|++++..+-.. +.+|++.|..-+...+++.|+..++.|.
T Consensus 378 dP~ka-----~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 378 DPKKA-----VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred CcccC-----CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 45542 22346789999999999999999999999999875432 6789999999999999999999999998
Q ss_pred hcCCC-------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 013948 240 DIDPN-------------------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQR 300 (433)
Q Consensus 240 ~~~p~-------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 300 (433)
.. |. ....|..++...-..|-++.... .|.+.+.+.--.|....+.+..+....-++++
T Consensus 453 ~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~-vYdriidLriaTPqii~NyAmfLEeh~yfees 530 (835)
T KOG2047|consen 453 HV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA-VYDRIIDLRIATPQIIINYAMFLEEHKYFEES 530 (835)
T ss_pred cC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHH
Confidence 76 32 35678888888889999999999 99999999999999999999998888889999
Q ss_pred cccccccCCCccc---hh-hhhh-------hcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHH
Q 013948 301 TGWDQTTSSSHYS---QE-SNQS-------TGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQG 367 (433)
Q Consensus 301 ~~~~~~~~~~~~~---~~-~~~~-------~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~ 367 (433)
...+++-...+.- .+ -+.| .++.+.+-|...| +++..| |......|...+ .+-..-|-...|+
T Consensus 531 Fk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp---p~~aKtiyLlYA-~lEEe~GLar~am 606 (835)
T KOG2047|consen 531 FKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP---PEHAKTIYLLYA-KLEEEHGLARHAM 606 (835)
T ss_pred HHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHH-HHHHHhhHHHHHH
Confidence 8888776643221 11 1222 3346667777777 888777 444555666777 7777779999999
Q ss_pred HHHhhhcCC
Q 013948 368 EDSNVSGSD 376 (433)
Q Consensus 368 ~~~~~al~l 376 (433)
..|++|-.-
T Consensus 607 siyerat~~ 615 (835)
T KOG2047|consen 607 SIYERATSA 615 (835)
T ss_pred HHHHHHHhc
Confidence 999997544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-05 Score=70.48 Aligned_cols=185 Identities=18% Similarity=0.149 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH---HHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS---KAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~ 251 (433)
+..|+..|...+..|+|++|++.|++....+|.. ..+...++.++++.+++++|+...++-+++.|.++ .+++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 6789999999999999999999999999998876 57899999999999999999999999999998764 67888
Q ss_pred HHHHHHHcC--------CHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhh
Q 013948 252 LGLAYYAQG--------NYNDAIEKGFKKALQLDPNNE---AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQST 320 (433)
Q Consensus 252 lg~~~~~~g--------~~~~A~~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 320 (433)
.|.+++..= -..+|+. .|+..+...|++. .+...+..+...+..++-+ .+.+|.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~-~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~--------------IaryY~ 178 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFA-AFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMA--------------IARYYL 178 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHH-HHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHH--------------HHHHHH
Confidence 899977542 2456787 8999999999864 3333333333333222221 123444
Q ss_pred cCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 321 GGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 321 ~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
..|.+-.|+.-+ .++--|+.. ...+++..+. .+|..+|-.++|...-+-.-..-|+.
T Consensus 179 kr~~~~AA~nR~~~v~e~y~~t~--~~~eaL~~l~-eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 179 KRGAYVAAINRFEEVLENYPDTS--AVREALARLE-EAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HhcChHHHHHHHHHHHhcccccc--chHHHHHHHH-HHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 444444444444 333323111 4455677777 77999999999977544443334443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.3e-05 Score=67.50 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC--cHHHHHHHHHH
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIA-LCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN--YSKAYSRLGLA 255 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~ 255 (433)
.-.+.+|+.+...|++.+|..+|++++. +...++..+..++.+.+..+++..|...+++..+.+|. .+...+.+|.+
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 4567889999999999999999999985 46678999999999999999999999999999999986 57888999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 256 YYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 256 ~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
+..+|.+.+|.. .|+.++...|+ +.+...++..+.++|+..++...+.
T Consensus 170 laa~g~~a~Aes-afe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 170 LAAQGKYADAES-AFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHhcCCchhHHH-HHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHH
Confidence 999999999999 99999999885 6777888888888887766655433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.9e-06 Score=92.87 Aligned_cols=223 Identities=7% Similarity=-0.082 Sum_probs=156.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|...+++++...+... ......+...+|.++...|++++|...+.+++...... ..++.++|.
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~-----~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTW-----YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCcc-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 5899999999999998654331 11234567788999999999999999999999764321 346778899
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC-----CHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPN--------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN-----NEAVKENI 287 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~-----~~~~~~~l 287 (433)
++...|++++|...+++++.+... ....+..+|.++...|++++|.. .+.+++.+... ....+..+
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQ-CARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHH-HHHHhHHhhhccCchHHHHHHHHH
Confidence 999999999999999999886221 23446678999999999999999 99999876332 24456667
Q ss_pred HHHHHHHHHHHHhcccccccCC----Cc--cch-------hhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHH
Q 013948 288 RMAEQKLREERQRTGWDQTTSS----SH--YSQ-------ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNM 352 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~~~~----~~--~~~-------~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~l 352 (433)
+.++...|+++.|......+.. .. ... ....+...|+.+.|...+ .....+ ..+......+..+
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~ 697 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF-ANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC-ccchhHHHHHHHH
Confidence 8888888988888776544421 10 000 012233456666666655 222111 0010122235678
Q ss_pred hhcccccCCChhhHHHHHhhhcCCC
Q 013948 353 ASNMPQAQPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 353 a~~~~~~~g~~~~A~~~~~~al~l~ 377 (433)
+ .++...|++++|...+.+++...
T Consensus 698 a-~~~~~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 698 A-RAQILLGQFDEAEIILEELNENA 721 (903)
T ss_pred H-HHHHHcCCHHHHHHHHHHHHHHH
Confidence 8 88999999999999999998763
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.6e-07 Score=82.61 Aligned_cols=165 Identities=10% Similarity=0.059 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
.......|.++...|++++|++.+.+. .+.++......+++.+++++.|.+.++..-+.+.+..-..+..+.+..
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l 176 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNL 176 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 345566677888899999999888764 577888888899999999999999999999999888777777777777
Q ss_pred HcC--CHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCccccc
Q 013948 258 AQG--NYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMP 335 (433)
Q Consensus 258 ~~g--~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~ 335 (433)
..| .+.+|.. .|+......|.++..+..++.++..+|++++|...... ++.
T Consensus 177 ~~g~e~~~~A~y-~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~--------------------------al~ 229 (290)
T PF04733_consen 177 ATGGEKYQDAFY-IFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEE--------------------------ALE 229 (290)
T ss_dssp HHTTTCCCHHHH-HHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHH--------------------------HCC
T ss_pred HhCchhHHHHHH-HHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH--------------------------HHH
Confidence 766 5999999 99998888888999999999999999999999886552 567
Q ss_pred CCCCCCCccHHHHHHHHhhcccccCCCh-hhHHHHHhhhcCCCCCc
Q 013948 336 FNTNALPTDIASMLMNMASNMPQAQPSQ-SRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 336 ~~p~~~~~~~~~a~~~la~~~~~~~g~~-~~A~~~~~~al~l~P~~ 380 (433)
.+| .++.++.+++ .+...+|+. +.+.+...+....+|+.
T Consensus 230 ~~~-----~~~d~LaNli-v~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 230 KDP-----NDPDTLANLI-VCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp C-C-----CHHHHHHHHH-HHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred hcc-----CCHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 889 9999999999 888888988 55666666666678874
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.4e-07 Score=80.64 Aligned_cols=181 Identities=12% Similarity=0.070 Sum_probs=134.3
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 013948 189 MQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 268 (433)
.+..+|..||+++..-.+.+|.+...+..+|.||+...+|..|..+|++.-.+.|......+..++.+++.+.+..|+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr- 99 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR- 99 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH-
Confidence 5677899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhCCCCHHHHHHH----HHHHHHHHHHHHhcccccccC-CCcc---chhhhhhhcCCCCCCCCCcc--cccCCC
Q 013948 269 GFKKALQLDPNNEAVKENI----RMAEQKLREERQRTGWDQTTS-SSHY---SQESNQSTGGFRSHGTPPSF--TMPFNT 338 (433)
Q Consensus 269 ~~~~al~~~p~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~-~~~~---~~~~~~~~~~~~~~~A~~~~--al~~~p 338 (433)
....... ++...... +.+....++...+........ .... ...+-+..+.|+|+.|++.| +++...
T Consensus 100 V~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 100 VAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 6555432 23222221 222222222222222111111 0111 11133455669999999999 888887
Q ss_pred CCCCccHHHHHHHHhhcccccCCChhhHHHHHhh----hcCCCCCc
Q 013948 339 NALPTDIASMLMNMASNMPQAQPSQSRQGEDSNV----SGSDEPGI 380 (433)
Q Consensus 339 ~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~----al~l~P~~ 380 (433)
-.+..-++++ .++...|+++.|++.... .+...|+.
T Consensus 176 -----yqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 176 -----YQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred -----CCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 7778889999 899999999999977655 45567776
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7e-06 Score=64.99 Aligned_cols=89 Identities=15% Similarity=0.246 Sum_probs=81.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----AVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 222 (433)
.|+++.|++.|.++|.+.|+. +.+|++.+..+.-+|+.++|++.+++++++.... ..++..+|.+|
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~r----------aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPER----------ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred ccchHHHHHHHHHHHHhcccc----------hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 589999999999999999988 8999999999999999999999999999996554 46799999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCc
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNY 245 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~ 245 (433)
..+|+.+.|...|..+-++...+
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCHH
Confidence 99999999999999988876543
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.6e-06 Score=71.19 Aligned_cols=105 Identities=26% Similarity=0.335 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cCCC----------HHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIAL--------CGNN----------AVYYSNRAAAYTQIHQYAEAVRDCLKSI 239 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al 239 (433)
..++...|+-++..|+|.+|...|..|+.. .|.+ ..++.|++.|++..|+|-++++.+..++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 557788999999999999999999999743 3444 3578999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHH
Q 013948 240 DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAV 283 (433)
Q Consensus 240 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~ 283 (433)
...|.+..+++..|.++...=+..+|.. .|.++|+++|.-..+
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~-D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKA-DLQKVLELDPSLASV 300 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHH-HHHHHHhcChhhHHH
Confidence 9999999999999999999999999999 999999999975543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.7e-06 Score=68.92 Aligned_cols=95 Identities=20% Similarity=0.192 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS----------QQYSDAIELYSFAIALCGNNAVYYSNR 218 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~l 218 (433)
-|+.|.+.++.....+|.+ ++.++.-|..+... .-+++|+.-|++||.++|+...+++++
T Consensus 6 ~FE~ark~aea~y~~nP~D----------adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~l 75 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLD----------ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCL 75 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-----------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHh----------HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 4778999999999999987 66666666655433 346889999999999999999999999
Q ss_pred HHHHHHhhc-----------HHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 219 AAAYTQIHQ-----------YAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 219 a~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
|.+|..++. |++|..+|++|...+|++......|.
T Consensus 76 GnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 76 GNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 999988764 78899999999999999975544443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.6e-06 Score=76.55 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=126.9
Q ss_pred HHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 013948 128 FAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL 207 (433)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 207 (433)
.....+-..|.+++..+.-+|+|+.|+...+.-|.+....+ +....-.++.++|+++...|+++.|+++|.+.+.+
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG----DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG----DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh----hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 33334445566777777778999999999999888876653 22334678999999999999999999999987654
Q ss_pred c----C--CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 208 C----G--NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 208 ~----p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
. . ..+...|.+|..|.-..++.+||.++.+-+.+... -..++..||.++..+|..++|+. +.++.++
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~-fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY-FAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH-HHHHHHH
Confidence 2 1 23567889999999999999999999987776432 45788899999999999999998 7777665
Q ss_pred h----C-CC-CHHHHHHHHHHHHHHHHHH
Q 013948 276 L----D-PN-NEAVKENIRMAEQKLREER 298 (433)
Q Consensus 276 ~----~-p~-~~~~~~~l~~~~~~~~~~~ 298 (433)
+ + +. ...+..+|......+|..+
T Consensus 344 ~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 344 SSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 4 2 22 3456677777777777644
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.4e-05 Score=67.52 Aligned_cols=191 Identities=22% Similarity=0.266 Sum_probs=153.6
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHh
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIA--LCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~ 225 (433)
+.+..+...+...+...+.. .........+..+...+++..++..+...+. ..+.....+...+.++...
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (291)
T COG0457 37 GELAEALELLEEALELLPNS--------DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEAL 108 (291)
T ss_pred hhHHHHHHHHHHHHhcCccc--------cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Confidence 45666666777766665431 1256778888999999999999999999997 6888899999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHHHHHHHhc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGL-AYYAQGNYNDAIEKGFKKALQLDP---NNEAVKENIRMAEQKLREERQRT 301 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~a~ 301 (433)
+++..++..+.+++...+.........+. ++...|+++.|.. .+.+++..+| .........+..+...++...+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 187 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALE-LYEKALELDPELNELAEALLALGALLEALGRYEEAL 187 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHH
Confidence 99999999999999998888666777777 8999999999999 9999988777 34455555555555556666665
Q ss_pred ccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCcc-HHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 302 GWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTD-IASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~-~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
..... ++...+ . ....+..++ ..+...+++++|...+.+++...|.
T Consensus 188 ~~~~~--------------------------~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 188 ELLEK--------------------------ALKLNP-----DDDAEALLNLG-LLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHH--------------------------HHhhCc-----ccchHHHHHhh-HHHHHcccHHHHHHHHHHHHhhCcc
Confidence 55442 455566 5 577888999 8999999999999999999999998
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5e-05 Score=81.10 Aligned_cols=193 Identities=10% Similarity=0.116 Sum_probs=146.4
Q ss_pred CCchhHHHHHHHHHHhh-cCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCccccc
Q 013948 33 VDLEGLEVARECLTEVF-KLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTE 111 (433)
Q Consensus 33 ~~~~~~e~A~~~~~kAl-~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (433)
+....+|+|++..++|| .||+...+ -.-+++.+|.+++.+.-
T Consensus 1469 LelsEiekAR~iaerAL~tIN~REee---EKLNiWiA~lNlEn~yG---------------------------------- 1511 (1710)
T KOG1070|consen 1469 LELSEIEKARKIAERALKTINFREEE---EKLNIWIAYLNLENAYG---------------------------------- 1511 (1710)
T ss_pred hhhhhhHHHHHHHHHHhhhCCcchhH---HHHHHHHHHHhHHHhhC----------------------------------
Confidence 46677999999999999 68887762 12222233333322211
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc
Q 013948 112 EPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS 191 (433)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~ 191 (433)
...+..+.|+++.+....+..+..+...+...+.+++|.++++..++.+.+. ...|..+|..+++.
T Consensus 1512 ----~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~----------~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1512 ----TEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT----------RKVWIMYADFLLRQ 1577 (1710)
T ss_pred ----cHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch----------hhHHHHHHHHHhcc
Confidence 0012344566666666655666666555556788899999999998887643 77899999999999
Q ss_pred cCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 013948 192 QQYSDAIELYSFAIALCGN--NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269 (433)
Q Consensus 192 ~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 269 (433)
.+-+.|...+.+|+..-|. +....-..|.+.++.|+.+.+...|+-.+..+|.-...|.-+...-...|+.+-... .
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~-l 1656 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRD-L 1656 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHH-H
Confidence 9889999999999998887 678888889999999999999999999999999999999988888888999888888 9
Q ss_pred HHHHHhhC
Q 013948 270 FKKALQLD 277 (433)
Q Consensus 270 ~~~al~~~ 277 (433)
|++++.+.
T Consensus 1657 feRvi~l~ 1664 (1710)
T KOG1070|consen 1657 FERVIELK 1664 (1710)
T ss_pred HHHHHhcC
Confidence 99988764
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-05 Score=73.68 Aligned_cols=225 Identities=11% Similarity=0.067 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 013948 122 ELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELY 201 (433)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 201 (433)
..+.++.+.+..+..+....+...+.|.+++++.+--..|+...... +..-...++.+++..+....++.+++.+-
T Consensus 31 ~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~----ds~~~~ea~lnlar~~e~l~~f~kt~~y~ 106 (518)
T KOG1941|consen 31 KVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE----DSDFLLEAYLNLARSNEKLCEFHKTISYC 106 (518)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44667777777777777777777788999988877655555433221 11223678888999999899999999888
Q ss_pred HHHHHhcCCC-----HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 013948 202 SFAIALCGNN-----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY------SKAYSRLGLAYYAQGNYNDAIEKGF 270 (433)
Q Consensus 202 ~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~ 270 (433)
+..+.+-..+ .....-+|.++..++.++++++.|++|++...++ -.++..||..+.++.++++|.- +.
T Consensus 107 k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~-f~ 185 (518)
T KOG1941|consen 107 KTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALF-FP 185 (518)
T ss_pred HHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhh-hh
Confidence 8777664333 3566778999999999999999999999985443 2577889999999999999999 89
Q ss_pred HHHHhhCCC----CH------HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCC
Q 013948 271 KKALQLDPN----NE------AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNA 340 (433)
Q Consensus 271 ~~al~~~p~----~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~ 340 (433)
.+|.++-.. +. -+.+.++..+..+|....|.++-+.+..... .....|
T Consensus 186 ~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal--------------------~~Gdra-- 243 (518)
T KOG1941|consen 186 CKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL--------------------QHGDRA-- 243 (518)
T ss_pred HhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH--------------------HhCChH--
Confidence 999876432 22 3567788888888888777776443221000 112234
Q ss_pred CCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCC
Q 013948 341 LPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 341 ~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~ 377 (433)
-.+....-+| .+|...|+.+.|..-|+.|....
T Consensus 244 ---~~arc~~~~a-DIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 244 ---LQARCLLCFA-DIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred ---HHHHHHHHHH-HHHHhcccHhHHHHHHHHHHHHH
Confidence 6677788889 99999999999999998886543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.2e-05 Score=69.49 Aligned_cols=121 Identities=21% Similarity=0.099 Sum_probs=99.3
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
..|-+.-|.--|.+++.+.|+- +.+++.+|..+...|+|+.|.+.|...++++|...-++.|+|..++--
T Consensus 77 SlGL~~LAR~DftQaLai~P~m----------~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~ 146 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDM----------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 146 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCc----------HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeec
Confidence 4788999999999999998876 999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD 277 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~ 277 (433)
|+|.-|.+.+.+--..+|++|.--..+-..- ..-+..+|.....+++-..+
T Consensus 147 gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~dP~~A~tnL~qR~~~~d 197 (297)
T COG4785 147 GRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLDPKQAKTNLKQRAEKSD 197 (297)
T ss_pred CchHhhHHHHHHHHhcCCCChHHHHHHHHHH-hhCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999974333332222 23455666651334454444
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.2e-05 Score=72.12 Aligned_cols=198 Identities=11% Similarity=0.029 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...|...|.--..++++..|..+|++||..+..+..+|...+.+-++.++...|...+++|+.+-|.-...|+..-.+--
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCC-Cccch-h---hhhhhcCCCCCCCCCcc
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSS-SHYSQ-E---SNQSTGGFRSHGTPPSF 332 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~-~---~~~~~~~~~~~~A~~~~ 332 (433)
.+|+...|.+ .|++-++..|+ ..+|......-......+.|...+..-.. .|.-. . +.+-...|+...+...|
T Consensus 153 ~LgNi~gaRq-iferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQ-IFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHH-HHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999999 99999999985 56777777777777888888888776543 22211 1 23344557666666666
Q ss_pred --cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 333 --TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 333 --al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
|++.-. .+......+...| ..-..+..++.|...|+-||.--|.+
T Consensus 231 erAie~~~--~d~~~e~lfvaFA-~fEe~qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 231 ERAIEFLG--DDEEAEILFVAFA-EFEERQKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred HHHHHHhh--hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 444333 0113444555555 55566677888888888888777764
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.7e-06 Score=54.62 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHH
Q 013948 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL 252 (433)
Q Consensus 215 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 252 (433)
|+.+|.+|..+|++++|+..|+++++.+|+++.+|..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 33344444444444444444444444444444444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.11 E-value=7e-06 Score=53.28 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013948 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRM 289 (433)
Q Consensus 246 ~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~ 289 (433)
|.+++.+|.+|..+|++++|+. .|+++++.+|+++.+|..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~-~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAER-LLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCcCCHHHHHHhhh
Confidence 4678999999999999999999 999999999999999999875
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.6e-06 Score=78.29 Aligned_cols=96 Identities=31% Similarity=0.511 Sum_probs=89.2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN 261 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 261 (433)
...+.-.+..|.++.|++.|..+|.++|..+.++..++.++++++++..|+..|..+++++|+....|-..|.+...+|+
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 33445566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCC
Q 013948 262 YNDAIEKGFKKALQLDP 278 (433)
Q Consensus 262 ~~~A~~~~~~~al~~~p 278 (433)
|++|.. .+..+.+++=
T Consensus 198 ~e~aa~-dl~~a~kld~ 213 (377)
T KOG1308|consen 198 WEEAAH-DLALACKLDY 213 (377)
T ss_pred hHHHHH-HHHHHHhccc
Confidence 999999 9999998863
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.7e-06 Score=51.08 Aligned_cols=31 Identities=39% Similarity=0.755 Sum_probs=15.2
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 013948 235 CLKSIDIDPNYSKAYSRLGLAYYAQGNYNDA 265 (433)
Q Consensus 235 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 265 (433)
|+++|+++|+++.+|+++|.+|...|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 3444444555555555555555444544444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.06 E-value=4e-06 Score=50.93 Aligned_cols=34 Identities=41% Similarity=0.474 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHH
Q 013948 200 LYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVR 233 (433)
Q Consensus 200 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 233 (433)
+|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999863
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=74.49 Aligned_cols=232 Identities=12% Similarity=0.073 Sum_probs=138.1
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
+...+++|+....+.++.-.+..+-+.++|.+....-.+....+...-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~-------------------------------- 65 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF-------------------------------- 65 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH--------------------------------
Confidence 455678888888888877766666666777776666666555442200
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC
Q 013948 114 DSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ 193 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 193 (433)
..+.-..+....+.......|.+....+....++.+++.+.+-.+.+-...+.. .-..+...+|+.+...+.
T Consensus 66 ---a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~-----~~gq~~l~~~~Ahlgls~ 137 (518)
T KOG1941|consen 66 ---AVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQ-----LGGQVSLSMGNAHLGLSV 137 (518)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc-----ccchhhhhHHHHhhhHHH
Confidence 001111222233333333333333333333455666666555555542222111 113455567777777788
Q ss_pred HHHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC----------cHHHHHHHHHHHH
Q 013948 194 YSDAIELYSFAIALCGN--N----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN----------YSKAYSRLGLAYY 257 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~ 257 (433)
|+++++.|++|++...+ | ..++..+|..+..+.++++|+-+..+|.++... ..-+.+.++..+.
T Consensus 138 fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR 217 (518)
T KOG1941|consen 138 FQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR 217 (518)
T ss_pred HHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH
Confidence 88888888888776332 2 346777888888888888888888887776432 1345666777777
Q ss_pred HcCCHHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 258 AQGNYNDAIEKGFKKALQLD------PNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
.+|..-.|.+ +.+++.++. +-.......++.+|...|+.+.+...|+.
T Consensus 218 ~~G~LgdA~e-~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 218 LLGRLGDAME-CCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HhcccccHHH-HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 8888888877 777776542 22334556677777777777666555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00013 Score=74.89 Aligned_cols=217 Identities=13% Similarity=0.002 Sum_probs=154.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.++|.+|.....+.++.+|+. ..+....|..+.+.|+.++|..+++..-...++|-..+.-+-.||..++
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~----------~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNA----------LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCc----------HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence 489999999999999998887 7888889999999999999998888766677788888889999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHHHHHHHhcc---
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN-IRMAEQKLREERQRTG--- 302 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~-l~~~~~~~~~~~~a~~--- 302 (433)
++++|..+|++++..+|. .+..+.+=.+|.+-+.|.+=.+ .--+..+..|+++-..+. +..+.......+....
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQk-aa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQK-AALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchh
Confidence 999999999999999999 8888888899999998887666 555666677877654433 3333333322222221
Q ss_pred ------cccccCCCc--c--chhh----hhhhcCCCCCCCCCcc---cccCCCCCCCccHHHHHHHHhhcccccCCChhh
Q 013948 303 ------WDQTTSSSH--Y--SQES----NQSTGGFRSHGTPPSF---TMPFNTNALPTDIASMLMNMASNMPQAQPSQSR 365 (433)
Q Consensus 303 ------~~~~~~~~~--~--~~~~----~~~~~~~~~~~A~~~~---al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~ 365 (433)
..+.....+ . ..+. .+.-..|++++|++.+ ..+..+ .......+++...+...+++.+
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~-----~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT-----SANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc-----ccchHHHHHHHHHHHHhcChHH
Confidence 111111111 1 1222 2334558899998887 223333 2233343344356677788888
Q ss_pred HHHHHhhhcCCCCCc
Q 013948 366 QGEDSNVSGSDEPGI 380 (433)
Q Consensus 366 A~~~~~~al~l~P~~ 380 (433)
-.+...+++.-+|++
T Consensus 245 l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 245 LFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHhCCcc
Confidence 877777777777775
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00012 Score=65.13 Aligned_cols=137 Identities=18% Similarity=0.193 Sum_probs=113.1
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----c--CCCHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL----C--GNNAVYYSNRA 219 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~~~~la 219 (433)
..|+|.-+...+.+++..+|.. .+.....+|.+.++.|+.+.|..+|++.-+. + .......-+.+
T Consensus 189 G~kEy~iS~d~~~~vi~~~~e~---------~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIKYYPEQ---------EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred cchhhhhhHHHHHHHHHhCCcc---------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 4578888899999999977443 2667788999999999999999999854432 2 22356777888
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN---EAVKENIRMAEQ 292 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~---~~~~~~l~~~~~ 292 (433)
.++...++|.+|...|.+++..+|.++.+..+.|.|+..+|+...|++ .++.++...|.. ..+..+|-.++.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK-~~e~~~~~~P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALK-QLEAMVQQDPRHYLHESVLFNLTTMYE 334 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHH-HHHHHhccCCccchhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 999999999963 445555554443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00061 Score=59.77 Aligned_cols=131 Identities=17% Similarity=0.157 Sum_probs=102.0
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS-QQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
++..+|+.+++++++++..-+.- ..-+.-+..+|.+|... .++++||.+|+++-+-...+ -.++...|.
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf----~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRF----TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHH----HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 68999999999999998765311 11245566899998876 89999999999998765433 245666677
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYS-------KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAV 283 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~ 283 (433)
.-..+++|.+|+..|+++....-++. ..++.-|.|++-..+.-.+.. .+++..+++|.....
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~-ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQR-ALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHH-HHHHHHhcCCccccc
Confidence 77889999999999999988766654 334556888888888888888 899999999986543
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.7e-05 Score=68.22 Aligned_cols=88 Identities=16% Similarity=0.057 Sum_probs=82.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 013948 144 NDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYT 223 (433)
Q Consensus 144 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 223 (433)
+.....|+.|+..|.++|.++|.. +..|.+.+.|+++.++|+.......+++++.|+.+..++.+|.+..
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~----------~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTV----------ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCc----------chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 334678999999999999999987 7888999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHHHhc
Q 013948 224 QIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~ 241 (433)
....|++|+..+.++..+
T Consensus 90 ~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred hhccccHHHHHHHHHHHH
Confidence 999999999999999766
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00018 Score=60.87 Aligned_cols=152 Identities=11% Similarity=0.039 Sum_probs=117.7
Q ss_pred HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHH
Q 013948 187 RVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-DPNYSKAYSRLGLAYYAQGNYNDA 265 (433)
Q Consensus 187 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A 265 (433)
...+.=+.+....-..+.++.-|.. .-.+.+|..+.++|++.+|...|++++.- .-.++...+.++++.+..+++..|
T Consensus 65 a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 65 ALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 3344446666666667777776644 55678999999999999999999999874 567888999999999999999999
Q ss_pred HHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCc
Q 013948 266 IEKGFKKALQLDPN--NEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPT 343 (433)
Q Consensus 266 ~~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~ 343 (433)
.. .+++..+.+|. .+.....+++++...|++.+|+.-++. ++.--|
T Consensus 144 ~~-tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~--------------------------a~~~yp----- 191 (251)
T COG4700 144 QQ-TLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEV--------------------------AISYYP----- 191 (251)
T ss_pred HH-HHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHH--------------------------HHHhCC-----
Confidence 99 99999999885 567788889999999988877665542 233334
Q ss_pred cHHHHHHHHhhcccccCCChhhHHHHHhhh
Q 013948 344 DIASMLMNMASNMPQAQPSQSRQGEDSNVS 373 (433)
Q Consensus 344 ~~~~a~~~la~~~~~~~g~~~~A~~~~~~a 373 (433)
.+.+....+ .++..+|+.++|.+-|...
T Consensus 192 -g~~ar~~Y~-e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 192 -GPQARIYYA-EMLAKQGRLREANAQYVAV 219 (251)
T ss_pred -CHHHHHHHH-HHHHHhcchhHHHHHHHHH
Confidence 235566677 7888899888887766544
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.5e-05 Score=76.80 Aligned_cols=111 Identities=19% Similarity=0.199 Sum_probs=99.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.++|+.|+..|.++|+++|++ +..+-+.+..+.+.++|..|+.-+.+||+.+|....+|+..|.+...++
T Consensus 17 ~~~fd~avdlysKaI~ldpnc----------a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNC----------AIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcc----------eeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 489999999999999999988 7778888889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--cCCHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA--QGNYNDAIE 267 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~ 267 (433)
.+.+|+..|++...+.|+.+.+...+-.|-.. ...++.|+.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~ 129 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAIL 129 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhccc
Confidence 99999999999999999999998888777543 333444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00024 Score=63.46 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=112.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ- 224 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 224 (433)
..|++++|......... .++...--.++.+..+++-|...+++...++.+ ..+..||.++.+
T Consensus 120 ~~~~~deAl~~~~~~~~---------------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~l 182 (299)
T KOG3081|consen 120 HDGDFDEALKALHLGEN---------------LEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKL 182 (299)
T ss_pred cCCChHHHHHHHhccch---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHH
Confidence 45888998887777433 344555567888899999999999999887643 344445554443
Q ss_pred ---hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhc
Q 013948 225 ---IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRT 301 (433)
Q Consensus 225 ---~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 301 (433)
.+++.+|.-.|+..-...|..+.....++.|+..+|+|++|.. .++.+|..++++++++.++..+-...|...++.
T Consensus 183 a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~-lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAES-LLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHH-HHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 3468999999999999888899999999999999999999999 999999999999999999999988888865554
Q ss_pred cc
Q 013948 302 GW 303 (433)
Q Consensus 302 ~~ 303 (433)
..
T Consensus 262 ~r 263 (299)
T KOG3081|consen 262 ER 263 (299)
T ss_pred HH
Confidence 43
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00061 Score=70.25 Aligned_cols=212 Identities=12% Similarity=0.036 Sum_probs=146.7
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 013948 189 MQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 268 (433)
...+++.+|+....+.++..|+...+...-|.++.++|+.++|..+++..-...+++...+-.+-.||..++++++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~- 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH- 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH-
Confidence 4578999999999999999999999999999999999999999999888888889999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH----hcccccccCCCccchh--hhhhhcC-CCCCCCCC-cc--------
Q 013948 269 GFKKALQLDPNNEAVKENIRMAEQKLREERQ----RTGWDQTTSSSHYSQE--SNQSTGG-FRSHGTPP-SF-------- 332 (433)
Q Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~--~~~~~~~-~~~~~A~~-~~-------- 332 (433)
.|++++..+|+ .+....+=.+|.+.+.+.+ |...+......+...+ ..++++. ...+.... .+
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 99999999999 7777777777766665433 4555665555555444 2333333 33444433 22
Q ss_pred --cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhh--hcCCCCCcccccccccccc--cCCcHHHHHHHHHHH
Q 013948 333 --TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNV--SGSDEPGIRIGGNINLNFG--ENMPEDITGALRSMM 406 (433)
Q Consensus 333 --al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~--al~l~P~~~~~~~~~~~l~--~~~~~~~~~a~~~~~ 406 (433)
.++.. + .-...+++...+ .++..+|.+++|.+.+.. +-.+-+.+...-+..+.+. -..+.++.+...++.
T Consensus 178 ~~~l~~~-g-k~~s~aE~~Lyl--~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 178 QKLLEKK-G-KIESEAEIILYL--LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHhccC-C-ccchHHHHHHHH--HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 22222 1 112333443333 356778999999998844 2233333344444444443 345555444444444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.1e-05 Score=47.75 Aligned_cols=29 Identities=34% Similarity=0.646 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 013948 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 215 ~~~la~~~~~~~~~~~A~~~~~~al~~~p 243 (433)
|+++|.++..+|++++|+.+|+++++++|
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 33444444444444444444444444433
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0011 Score=58.61 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=102.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
...|.++..+++++..+.-+++ .|+.+..-...+--....-++++|+.+|++++.+-..+ .+.+-..+.
T Consensus 84 ~~klsEvvdl~eKAs~lY~E~G-----spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 84 LSKLSEVVDLYEKASELYVECG-----SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHhHHHHHHHHHHHHHHHHhC-----CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 4678899999999999988874 44445555566666778889999999999999875443 456777889
Q ss_pred HHHHhhcHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC----CCCHHHHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD----PNNEAVKENIRMA 290 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~----p~~~~~~~~l~~~ 290 (433)
++.+.++|.+|-..+.+-... .|+.-..+...-.+|....+|..|.. +++..-++. |.+..+..+|-..
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aek-c~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEK-CYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHH-HhcchhcCccccChHHHHHHHHHHHH
Confidence 999999999998888765433 24444556666667777789999999 999877653 4445555555444
Q ss_pred H
Q 013948 291 E 291 (433)
Q Consensus 291 ~ 291 (433)
|
T Consensus 238 y 238 (308)
T KOG1585|consen 238 Y 238 (308)
T ss_pred h
Confidence 3
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0031 Score=55.48 Aligned_cols=167 Identities=14% Similarity=0.157 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhCCCCHH--
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY------SKAYSRLGLAYYAQ-GNYNDAIEKGFKKALQLDPNNEA-- 282 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~~al~~~p~~~~-- 282 (433)
...|...+.||.+ .++.+|+.++++++.+.-+. +..+..+|.+|..- .++++|+. +|+++-+.......
T Consensus 74 at~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~-~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 74 ATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIA-HYEQAAEYYKGEESVS 151 (288)
T ss_pred HHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHH-HHHHHHHHHcchhhhh
Confidence 3445555555544 37777777777777765443 23344677777543 77777777 77777665433211
Q ss_pred ----HHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccc
Q 013948 283 ----VKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQ 358 (433)
Q Consensus 283 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~ 358 (433)
.+.-.+..-..++++.+|+..+..+..... +.+-..-.....++.-| .++.
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~------------------------~n~LLKys~KdyflkAg-LChl 206 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL------------------------DNNLLKYSAKDYFLKAG-LCHL 206 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------------cchHHHhHHHHHHHHHH-HHhH
Confidence 222233334456677777666554321110 00000002223344444 5666
Q ss_pred cCCChhhHHHHHhhhcCCCCCc--ccccccccccc----cCCcHHHHHHHHHH
Q 013948 359 AQPSQSRQGEDSNVSGSDEPGI--RIGGNINLNFG----ENMPEDITGALRSM 405 (433)
Q Consensus 359 ~~g~~~~A~~~~~~al~l~P~~--~~~~~~~~~l~----~~~~~~~~~a~~~~ 405 (433)
-..+.-.+....++-.+++|.+ +.-.+++-.|. +.+.+.+.+..+.+
T Consensus 207 ~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkef 259 (288)
T KOG1586|consen 207 CKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEF 259 (288)
T ss_pred hcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 6567666777777778888988 55566665552 55555555554443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.001 Score=58.74 Aligned_cols=219 Identities=11% Similarity=0.036 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHH
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAAAY 222 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~ 222 (433)
...++.+...+.+..+..++ ...+..|..-+.++...++|++|..++.+|++-..++ +..+-..|.+.
T Consensus 8 ki~ea~e~~a~t~~~wkad~------dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLa 81 (308)
T KOG1585|consen 8 KISEADEMTALTLTRWKADW------DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLA 81 (308)
T ss_pred HHHHHHHHHHHHhhccCCCc------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 44555555555544332221 1224556666777888899999999999999665544 34566677788
Q ss_pred HHhhcHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDI-----DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN------EAVKENIRMAE 291 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~------~~~~~~l~~~~ 291 (433)
..+..+.++..+|++|..+ .|+....-+..+-=....-+.++|++ .|++++.+-..+ .+.+-..++++
T Consensus 82 ke~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~Alq-lYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 82 KELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQ-LYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHH-HHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 8889999999999999987 35555445555555667788999999 999988764332 23344556677
Q ss_pred HHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHh
Q 013948 292 QKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSN 371 (433)
Q Consensus 292 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~ 371 (433)
..+.++.+|.....+...... -...-| +....+.... .++....++..|..+|+
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~--------------------~~~~y~-----~~~k~~va~i-lv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAAD--------------------KCDAYN-----SQCKAYVAAI-LVYLYAHDYVQAEKCYR 214 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHH--------------------HHhhcc-----cHHHHHHHHH-HHHhhHHHHHHHHHHhc
Confidence 777777776655442110000 122234 4455566666 66777789999999999
Q ss_pred hhcCC----CCCc-ccccccccccccCCcHHHHH
Q 013948 372 VSGSD----EPGI-RIGGNINLNFGENMPEDITG 400 (433)
Q Consensus 372 ~al~l----~P~~-~~~~~~~~~l~~~~~~~~~~ 400 (433)
..-+. .|++ ....|++......++|.+..
T Consensus 215 ~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~k 248 (308)
T KOG1585|consen 215 DCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKK 248 (308)
T ss_pred chhcCccccChHHHHHHHHHHHHhccCCHHHHHH
Confidence 86443 4444 66667765553556665544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.86 E-value=3e-05 Score=47.10 Aligned_cols=34 Identities=47% Similarity=0.947 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 246 ~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
+.+|+++|.++..+|++++|+. +|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~-~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALE-YYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHH-HHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHH-HHHHHHHHCcCC
Confidence 4689999999999999999999 999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00032 Score=64.62 Aligned_cols=149 Identities=9% Similarity=-0.030 Sum_probs=123.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CCCc---HHHHHHHHHHHHH
Q 013948 183 CQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-DPNY---SKAYSRLGLAYYA 258 (433)
Q Consensus 183 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~ 258 (433)
..+.+....|++.+|.....+.++..|.+.-++..--.++..+|+...-...+++++-. +|+. ..+.-.++..+..
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 34556677899999999999999999999988888888899999999999999999987 6665 5667778899999
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh----------hhhhhcCCCCCCC
Q 013948 259 QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQE----------SNQSTGGFRSHGT 328 (433)
Q Consensus 259 ~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~~~~~~A 328 (433)
.|-|++|.+ ...+++++||.+..+...++.++...+++.++.++.......-.+.. +..+..++.|+.|
T Consensus 188 ~g~y~dAEk-~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 188 CGIYDDAEK-QADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred hccchhHHH-HHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 999999999 99999999999999999999999999999998888665442211111 3456777899999
Q ss_pred CCcc
Q 013948 329 PPSF 332 (433)
Q Consensus 329 ~~~~ 332 (433)
++.|
T Consensus 267 leIy 270 (491)
T KOG2610|consen 267 LEIY 270 (491)
T ss_pred HHHH
Confidence 9888
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.7e-05 Score=46.13 Aligned_cols=29 Identities=62% Similarity=1.024 Sum_probs=11.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
|+.+|.+++.+|++++|+. +|+++++++|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~-~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIE-YFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHH-HHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHH-HHHHHHHHCc
Confidence 3333333333344444433 3333333333
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.2e-05 Score=45.90 Aligned_cols=34 Identities=32% Similarity=0.476 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY 245 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 245 (433)
+.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999985
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0003 Score=62.04 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=90.0
Q ss_pred hhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccc-cccchh-------hHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 013948 135 HYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGA-HAYNQK-------NLAEIFKCQGNRVMQSQQYSDAIELYSFAIA 206 (433)
Q Consensus 135 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 206 (433)
+.+...++.....|+|.+|...|+.|+....+-.. ..+..+ .....+.+..+|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 33444444444579999999999999875433210 011111 2245677889999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHH
Q 013948 207 LCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAY 249 (433)
Q Consensus 207 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 249 (433)
.+|.+..+++.+|.+....-+.++|...+.++++++|....+-
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 9999999999999999999999999999999999999865443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0011 Score=64.65 Aligned_cols=107 Identities=17% Similarity=0.135 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CCCcHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN--NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-DPNYSKAYSRLGL 254 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~ 254 (433)
..+...+|.|..+.|+.++|++.++..++.+|. +..++.++-.+++.++.|.++...+.+-=.+ -|..+...+..+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 456677999999999999999999999988876 4678999999999999999999988886433 2666777776666
Q ss_pred HHHHc-CC---------------HHHHHHHHHHHHHhhCCCCHHHHH
Q 013948 255 AYYAQ-GN---------------YNDAIEKGFKKALQLDPNNEAVKE 285 (433)
Q Consensus 255 ~~~~~-g~---------------~~~A~~~~~~~al~~~p~~~~~~~ 285 (433)
.-.+. ++ -..|++ .+.+|++.||.-+..+.
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~ave-Ai~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVE-AIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHH-HHHHHHHhCCCCchhhh
Confidence 54332 21 134677 89999999998776543
|
The molecular function of this protein is uncertain. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00046 Score=74.07 Aligned_cols=204 Identities=12% Similarity=0.008 Sum_probs=155.4
Q ss_pred cchHHHHHHHHHHHHHHH-hhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEM-EKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.++.++|.+.+++||.-. +.. .......|..+-+....-|.-+.-.+.|++|.+.+ +-...|..|.-+|...
T Consensus 1471 lsEiekAR~iaerAL~tIN~RE------eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ 1543 (1710)
T KOG1070|consen 1471 LSEIEKARKIAERALKTINFRE------EEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKS 1543 (1710)
T ss_pred hhhhHHHHHHHHHHhhhCCcch------hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHh
Confidence 789999999999998754 322 12224455555555555677777888999998765 4567888888999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHhccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN--NEAVKENIRMAEQKLREERQRTGW 303 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~ 303 (433)
+++++|.+.++..++...+....|..+|..++++.+-++|.. .+.+||+.-|. +.+...-.+....+.|+.+++...
T Consensus 1544 ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~-lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtl 1622 (1710)
T KOG1070|consen 1544 EKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARE-LLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTL 1622 (1710)
T ss_pred hcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHH-HHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHH
Confidence 999999999999999888888999999999999999999999 99999999888 666677778888888888887665
Q ss_pred ccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhh--cCCCCCc-
Q 013948 304 DQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVS--GSDEPGI- 380 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~a--l~l~P~~- 380 (433)
+.. .+...| .....|.-+. ..-...|+.+.+...|+|+ +.+.|..
T Consensus 1623 fEg--------------------------ll~ayP-----KRtDlW~VYi-d~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1623 FEG--------------------------LLSAYP-----KRTDLWSVYI-DMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred HHH--------------------------HHhhCc-----cchhHHHHHH-HHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 442 355567 7777777777 7777788888888888885 4688877
Q ss_pred cccccccccc
Q 013948 381 RIGGNINLNF 390 (433)
Q Consensus 381 ~~~~~~~~~l 390 (433)
-+..+.-+.+
T Consensus 1671 KfffKkwLey 1680 (1710)
T KOG1070|consen 1671 KFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHH
Confidence 3333333344
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0013 Score=61.43 Aligned_cols=125 Identities=10% Similarity=0.126 Sum_probs=94.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ-SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.+..+.|..+|.+|+...+.. ...|...|.+.+. .++.+.|..+|+.+++..|.+..+|......+...
T Consensus 14 ~~g~~~aR~vF~~a~~~~~~~----------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 14 TEGIEAARKVFKRARKDKRCT----------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCS-----------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hCChHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 356788888888887432222 5677778888666 56777799999999999999999998888888999
Q ss_pred hcHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 226 HQYAEAVRDCLKSIDIDPNYS---KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
++.+.|...|++++..-|... ..|......-...|+.+.... ..+++.+..|.+..
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~-v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRK-VEKRAEELFPEDNS 142 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHH-HHHHHHHHTTTS-H
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhhhhhH
Confidence 999999999999988866654 577777777788888888888 88888888887443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0005 Score=61.32 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc----C--CCcHHH
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI----D--PNYSKA 248 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~ 248 (433)
....+.+.+..++...|+|.-.+..+.+.++.+ |.++.....+|.+.++.|+.+.|..+++.+-+. + ..+.-+
T Consensus 175 Rl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 175 RLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 345677888899999999999999999999998 668999999999999999999999999955433 2 234567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
..+.+.++.-.++|..|.. .+.+++..+|.++.+..+.+.|...+|+..+|.+....+
T Consensus 255 ~~n~a~i~lg~nn~a~a~r-~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHR-FFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred HhhhhhheecccchHHHHH-HHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999 999999999999999999999999999999998876643
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0015 Score=58.49 Aligned_cols=128 Identities=14% Similarity=0.142 Sum_probs=102.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
..+++-|.+..++..+.+.+. .-...+.+|..++ ...+++..|.-+|+..-+..|..+.....++.|.+.++
T Consensus 150 ~~r~d~A~~~lk~mq~ided~-----tLtQLA~awv~la---~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDEDA-----TLTQLAQAWVKLA---TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHccchHH-----HHHHHHHHHHHHh---ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc
Confidence 457788888888887775542 0111233333332 23457999999999999888889999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
+|++|...++.++..+++++..+.++-.+-...|.-.++..+.+.+.....|..+-
T Consensus 222 ~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 99999999999999999999999999999999999988887577777777887664
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00037 Score=67.18 Aligned_cols=118 Identities=15% Similarity=0.112 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH-HHhcCC------C--HHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-------
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFA-IALCGN------N--AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI------- 241 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~p~------~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 241 (433)
+.+.+..++.++..|+|.+|.+.+... +...|. . ...|+++|.+++++|.|.-+..+|.+|++-
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 778889999999999999999988653 222332 2 345789999999999999999999999961
Q ss_pred --CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013948 242 --DP---------NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 242 --~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
.| ...++.|+.|..|...|+.-.|.+ +|.++....-.+|..|..++.|+....+
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~Afq-Cf~~av~vfh~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQ-CFQKAVHVFHRNPRLWLRLAECCIMALQ 384 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 22 246889999999999999999999 9999999999999999999999875433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0011 Score=66.48 Aligned_cols=119 Identities=18% Similarity=0.143 Sum_probs=91.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----AVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 222 (433)
..+.+.|.+++....+.+|+. ....+..|+++...|+.++|++.|++++.....- .-+++.+|+++
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s----------~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~ 315 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNS----------ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCH 315 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHH
Confidence 457788888888888888876 7778888889999999999999999887533222 35688889999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhh
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNY-SKAYSRLGLAYYAQGNY-------NDAIEKGFKKALQL 276 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~-------~~A~~~~~~~al~~ 276 (433)
.-+.+|++|..++.+..+.+.-. ....|..|.|+...++. ++|.. .|.++-.+
T Consensus 316 ~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~-l~~~vp~l 376 (468)
T PF10300_consen 316 MFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEE-LFRKVPKL 376 (468)
T ss_pred HHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHH-HHHHHHHH
Confidence 99999999999998888875443 34455578888888888 77777 77766544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0045 Score=58.39 Aligned_cols=225 Identities=11% Similarity=0.024 Sum_probs=149.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH--HHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAA--AYT 223 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~ 223 (433)
..||-..|....+++-.+...++ .+-++..-++...-.|+++.|.+.|+..+. +|+. ..+-.+|. --.
T Consensus 96 gAGda~lARkmt~~~~~llssDq--------epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAq 165 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQ--------EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQ 165 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccc--------hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHH
Confidence 35888888888888765544331 255667777888889999999999987664 4533 22222222 234
Q ss_pred HhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH------------------------------------
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE------------------------------------ 267 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~------------------------------------ 267 (433)
..|..+.|..+...+-...|.-++++...=...+..|+|+.|++
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 67888999999999999999998888888888888899988887
Q ss_pred ----HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCC-CccchhhhhhhcCCCCCCCCCcc-----cccCC
Q 013948 268 ----KGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSS-SHYSQESNQSTGGFRSHGTPPSF-----TMPFN 337 (433)
Q Consensus 268 ----~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~-----al~~~ 337 (433)
+.-.+++++.|+...+-.--+..+...|+..++-...+.+-+ .|.......|.....=+.++.-+ .-.+.
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcC
Confidence 123344555666666666666777777776666665554432 22233344444443323333333 34456
Q ss_pred CCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCccccccc
Q 013948 338 TNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGIRIGGNI 386 (433)
Q Consensus 338 p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 386 (433)
| ++.+..+..+ ..-..-|++..|...-+.+....|.-.++..+
T Consensus 326 ~-----nnaes~~~va-~aAlda~e~~~ARa~Aeaa~r~~pres~~lLl 368 (531)
T COG3898 326 P-----NNAESSLAVA-EAALDAGEFSAARAKAEAAAREAPRESAYLLL 368 (531)
T ss_pred c-----cchHHHHHHH-HHHHhccchHHHHHHHHHHhhhCchhhHHHHH
Confidence 6 7888888888 77777888888888888888888876444433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0032 Score=52.57 Aligned_cols=95 Identities=24% Similarity=0.278 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----------------------HHHHHHHHHHHHHhhcHHHHHHHHHH
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----------------------AVYYSNRAAAYTQIHQYAEAVRDCLK 237 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~ 237 (433)
.+...|......++...++..+.+++.+...+ ..+...++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34444556667778888888888888764221 23566677788889999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 238 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
++..+|-+..+|..+-.++...|++.+|+. .|++...
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~-~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALR-VYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHH-HHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHH-HHHHHHH
Confidence 999999999999999999999999999999 8887653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0021 Score=62.67 Aligned_cols=116 Identities=19% Similarity=0.152 Sum_probs=90.0
Q ss_pred HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC-----------------------
Q 013948 187 RVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP----------------------- 243 (433)
Q Consensus 187 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----------------------- 243 (433)
...+..+...-++.-.+|++++|+++.+|..||.= ......+|...|+++++...
T Consensus 177 ~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rd 254 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRD 254 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccc
Confidence 33466788889999999999999999999887652 22235666666666665421
Q ss_pred C--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 244 N--YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN--NEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 244 ~--~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
. ...+..++|.|..++|+.++|++ .++..++..|. +..++.+|..++..++.+.++.....
T Consensus 255 t~~~~y~KrRLAmCarklGr~~EAIk-~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 255 TNVLVYAKRRLAMCARKLGRLREAIK-MFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred cchhhhhHHHHHHHHHHhCChHHHHH-HHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0 14566779999999999999999 99999988775 56689999999999999988877654
|
The molecular function of this protein is uncertain. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.001 Score=62.26 Aligned_cols=126 Identities=10% Similarity=-0.007 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI-HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
+|..+.+...+.+..+.|..+|.+|++..+-...+|...|.+.+.. ++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 5666677777788899999999999966666789999999998885 555669999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHhcccccc
Q 013948 259 QGNYNDAIEKGFKKALQLDPNNE---AVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 259 ~g~~~~A~~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
.++.+.|.. .|++++..-|... .+|.....--...|+.+........
T Consensus 83 ~~d~~~aR~-lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 83 LNDINNARA-LFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp TT-HHHHHH-HHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred hCcHHHHHH-HHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999 9999998877655 4666666555666766655555443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0099 Score=51.01 Aligned_cols=100 Identities=15% Similarity=0.088 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc-HHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY-SKAYSRLG 253 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg 253 (433)
..+...++..+...+++++|+..++.++....+. ..+-.++|.+...+|.+++|+..+...-. +.. +..-...|
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrG 166 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRG 166 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhh
Confidence 4456678889999999999999999999754433 45678899999999999999998876533 222 23355689
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 254 LAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
.++...|+-++|.. .|++++...+..
T Consensus 167 Dill~kg~k~~Ar~-ay~kAl~~~~s~ 192 (207)
T COG2976 167 DILLAKGDKQEARA-AYEKALESDASP 192 (207)
T ss_pred hHHHHcCchHHHHH-HHHHHHHccCCh
Confidence 99999999999999 999999987543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.003 Score=63.43 Aligned_cols=153 Identities=14% Similarity=0.102 Sum_probs=110.6
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHH-H--H--HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNR-V--M--QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAY 222 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~-~--~--~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 222 (433)
||-+.++..+.++.+. +.-. . .--...-..+..+.. + . .....+.|.+.+.......|+.+-..+..|.++
T Consensus 202 gdR~~GL~~L~~~~~~-~~i~--~-~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~ 277 (468)
T PF10300_consen 202 GDRELGLRLLWEASKS-ENIR--S-PLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLE 277 (468)
T ss_pred CcHHHHHHHHHHHhcc-CCcc--h-HHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 8888888888887662 1110 0 000001111111111 1 1 355788999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPN----YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK-ENIRMAEQKLREE 297 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~-~~l~~~~~~~~~~ 297 (433)
...|+.++|++.|++++..... ..-+++.+|.++..+++|++|.. ++.+.++.+.-....+ +..|.|+..+++.
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~-~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE-YFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH-HHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999864433 35678889999999999999999 9999998766544443 4457788888887
Q ss_pred -------HHhccccc
Q 013948 298 -------RQRTGWDQ 305 (433)
Q Consensus 298 -------~~a~~~~~ 305 (433)
++|...+.
T Consensus 357 ~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 357 EEAKEHKKEAEELFR 371 (468)
T ss_pred hhhhhhHHHHHHHHH
Confidence 55555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00031 Score=42.47 Aligned_cols=29 Identities=31% Similarity=0.592 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 013948 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 215 ~~~la~~~~~~~~~~~A~~~~~~al~~~p 243 (433)
|+.+|.++..+|++++|+.+|+++++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33333333333333333333333333333
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0036 Score=52.27 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=69.9
Q ss_pred chHHHHHHHHHHHHHHHhhccccc-----c-------chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHA-----Y-------NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYY 215 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~-----~-------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 215 (433)
++.+.++..+++++.+....--.. + -......+...++..+...|++++|+..+++++..+|.+..+|
T Consensus 20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~ 99 (146)
T PF03704_consen 20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAY 99 (146)
T ss_dssp T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 677888888888888764331111 0 0122345566677888899999999999999999999999999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 216 SNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 216 ~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
..+-.+|...|++.+|+..|+++.+.
T Consensus 100 ~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 100 RLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999988654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0061 Score=54.55 Aligned_cols=135 Identities=15% Similarity=0.163 Sum_probs=112.2
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYS-DAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.++.+-++++.+.+..+|++ ..+|...-.+....|++. .-+++...++..+..+..+|..+-+|...-+
T Consensus 92 ~dL~~El~~l~eI~e~npKN----------YQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~ 161 (318)
T KOG0530|consen 92 SDLNKELEYLDEIIEDNPKN----------YQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFK 161 (318)
T ss_pred HHHHHHHHHHHHHHHhCccc----------hhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHh
Confidence 36778888999999999988 888888888888888888 8889999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ-G-----NYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g-----~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
.|+.-+.+....|+.+-.|-.+|...-.+.... | ..+.-+. +..+.+.+.|++..+|..|.-++..
T Consensus 162 ~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~-yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 162 DYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELN-YTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred hHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHH-HHHHHHHhCCCCccHHHHHHHHHHh
Confidence 999999999999999988777777654443332 2 2344566 7788899999999999999877654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0026 Score=58.84 Aligned_cols=116 Identities=9% Similarity=0.009 Sum_probs=90.0
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-cCCC---HHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL-CGNN---AVYYSNRAAA 221 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~la~~ 221 (433)
..|++-+|-....+.|+.+|.+ .-++..--..++..|+...-...+++.+-. +|+- ..+.-.++.+
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtD----------lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTD----------LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred ccccccHHHHHHHHHHHhCchh----------hhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 3578888888999999999987 566666667777788888888888888776 5554 3444556777
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013948 222 YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKK 272 (433)
Q Consensus 222 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 272 (433)
+..+|-|++|.+..+++++++|.+..+...++.++...|++.++.+ ...+
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~e-FM~~ 234 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKE-FMYK 234 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHH-HHHh
Confidence 8888888888888888888888888888888888888888888887 4443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.01 Score=54.25 Aligned_cols=137 Identities=12% Similarity=0.125 Sum_probs=96.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH--HHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRA--AAYTQ 224 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~ 224 (433)
.|++.+|...|..+++..|++ ..+...++.++...|+.+.|...+...=... .+....-..+ ..+.+
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~----------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPEN----------SEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQ 215 (304)
T ss_pred ccchhhHHHHHHHHHHhCccc----------chHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHH
Confidence 588999999999999998887 7888899999999999988887776521111 1111111112 22333
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHH
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP--NNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~ 296 (433)
.....+ ...+.+.+..+|++..+-+.+|..+...|+.++|.+ .+-..++.+- .+..+...+-.+....|.
T Consensus 216 aa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale-~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 216 AAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALE-HLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 333222 345677788899999999999999999999999999 8888887654 356666666666665553
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.002 Score=65.90 Aligned_cols=186 Identities=11% Similarity=0.053 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHH----------HHhcC----------CCHHHHHHHHHHHHHhhcHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFA----------IALCG----------NNAVYYSNRAAAYTQIHQYAEAVRDCL 236 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~~~~~~A~~~~~ 236 (433)
.-..|+..+..+...++.+.|+++|+++ +.-+| .+..+|-..|.-+...|+.+.|+.+|.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 3567889999999999999999999886 22233 345678888999999999999999998
Q ss_pred HHHhc---------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------hCCCC--HHHHHHH
Q 013948 237 KSIDI---------------------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ------LDPNN--EAVKENI 287 (433)
Q Consensus 237 ~al~~---------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~------~~p~~--~~~~~~l 287 (433)
.|-.. ...+-.+.|.+|..|...|++.+|+. .|.+|-. +...+ .+-+.++
T Consensus 937 ~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~-FfTrAqafsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 937 SAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVK-FFTRAQAFSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred HhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77432 23466788999999999999999998 7776543 32221 1112222
Q ss_pred HHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcc------------cccCCCCCCCccHHHHHHHHhhc
Q 013948 288 RMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF------------TMPFNTNALPTDIASMLMNMASN 355 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~------------al~~~p~~~~~~~~~a~~~la~~ 355 (433)
+..- ...+...|..+++... ........+|-+.|.+.+|++.- +-.++|+ .++......+ .
T Consensus 1016 al~s-~~~d~v~aArYyEe~g-~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~----sDp~ll~Rca-d 1088 (1416)
T KOG3617|consen 1016 ALMS-GGSDLVSAARYYEELG-GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG----SDPKLLRRCA-D 1088 (1416)
T ss_pred Hhhc-CchhHHHHHHHHHHcc-hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC----CCHHHHHHHH-H
Confidence 2111 1111222333333211 01112234566777777776542 4455663 3445555555 8
Q ss_pred ccccCCChhhHHHHH
Q 013948 356 MPQAQPSQSRQGEDS 370 (433)
Q Consensus 356 ~~~~~g~~~~A~~~~ 370 (433)
.+....+|++|...+
T Consensus 1089 FF~~~~qyekAV~lL 1103 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLL 1103 (1416)
T ss_pred HHHhHHHHHHHHHHH
Confidence 888888899887543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.002 Score=66.00 Aligned_cols=31 Identities=6% Similarity=-0.062 Sum_probs=26.3
Q ss_pred cHHHHHHHHhhcccccCCChhhHHHHHhhhcC
Q 013948 344 DIASMLMNMASNMPQAQPSQSRQGEDSNVSGS 375 (433)
Q Consensus 344 ~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~ 375 (433)
.+..+-+.+| +.|...|++.+|+..|.+|-.
T Consensus 965 gd~AAcYhla-R~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 965 GDKAACYHLA-RMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred ccHHHHHHHH-HHhhhhHHHHHHHHHHHHHHH
Confidence 6667888899 999999999999998888643
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.012 Score=56.45 Aligned_cols=181 Identities=13% Similarity=0.019 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHH---hhcHHHHHHHHHH-HHhcCCCcHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIAL----CGNNAVYYSNRAAAYTQ---IHQYAEAVRDCLK-SIDIDPNYSKAY 249 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~ 249 (433)
++....+=..|...++|+.-+...+..-.+ -++...+.+.+|.++.+ .|+.++|+..+.. .....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 455566666788899999888888765554 34457788899999999 9999999999999 555667889999
Q ss_pred HHHHHHHHHc---------CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhh
Q 013948 250 SRLGLAYYAQ---------GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQST 320 (433)
Q Consensus 250 ~~lg~~~~~~---------g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 320 (433)
..+|.+|... ...++|+. +|.++.+++|+ .-.-.|++.++...|.........++... .......
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~-~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~----~l~~llg 294 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIE-WYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGV----KLSSLLG 294 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHH-HHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHH----HHHHHHH
Confidence 9999999753 35789999 99999999964 33444555555555542221111110000 0001111
Q ss_pred cCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 321 GGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 321 ~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
..| .++... +.+..-..+ .+..-.|++++|..++++++.+.|..
T Consensus 295 ~kg---------~~~~~~-----dYWd~ATl~--Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 295 RKG---------SLEKMQ-----DYWDVATLL--EASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred hhc---------cccccc-----cHHHHHHHH--HHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 111 122223 444433333 34455799999999999999999886
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0012 Score=60.78 Aligned_cols=93 Identities=17% Similarity=0.235 Sum_probs=81.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.++|..|+..|.++|...-.+ +.-.+-.|.+++-+.+..|+|..|+.-..+++.++|.+..+++.-|.|++.++
T Consensus 94 ~Kryk~A~~~Yt~Glk~kc~D------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 94 EKRYKDAVESYTEGLKKKCAD------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hhhHHHHHHHHHHHHhhcCCC------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 589999999999999975443 22346778899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCc
Q 013948 227 QYAEAVRDCLKSIDIDPNY 245 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~ 245 (433)
++++|..+++..+.++-+.
T Consensus 168 ~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 168 RFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHhhhhhhhHHH
Confidence 9999999999987775443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00085 Score=40.47 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGN 210 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 210 (433)
.+|+.+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57999999999999999999999999999985
|
... |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00011 Score=67.78 Aligned_cols=87 Identities=22% Similarity=0.244 Sum_probs=82.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|.+++|++.|..+|.++|.. +..+..++.++...++...|++.+..++.++|+...-|-.+|.+...+|
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~----------a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPL----------AILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred CcchhhhhcccccccccCCch----------hhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 588999999999999998887 8889999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCC
Q 013948 227 QYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p 243 (433)
+|++|...+..+++++-
T Consensus 197 ~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDY 213 (377)
T ss_pred chHHHHHHHHHHHhccc
Confidence 99999999999999863
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0016 Score=64.22 Aligned_cols=107 Identities=21% Similarity=0.228 Sum_probs=95.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 013948 185 GNRVMQSQQYSDAIELYSFAIALCGNN-AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYN 263 (433)
Q Consensus 185 g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 263 (433)
|..+...|+...|+.++..|+...|.. .....++|.++.+.|-.-.|-..+.+++.++-.-+-.++.+|.++..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 344456799999999999999988865 3567899999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013948 264 DAIEKGFKKALQLDPNNEAVKENIRMAEQ 292 (433)
Q Consensus 264 ~A~~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (433)
.|++ .|++|++++|+++.....|-.+..
T Consensus 694 ~a~~-~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALE-AFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHH-HHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999 999999999999998888776655
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.03 Score=53.04 Aligned_cols=208 Identities=12% Similarity=0.056 Sum_probs=138.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---cCCC-----HHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL---CGNN-----AVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~-----~~~~~~l 218 (433)
.|+.+.|+.+...+-..-|.- .+++...-......|+|+.|++..+..... .++. ..++...
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l----------~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQL----------PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred cccHHHHHHHHHHHHhhccCC----------chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 488888888888888877765 666666666677889999999888765543 2222 1223333
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 298 (433)
+..... .+...|.....+++++.|+...+-..-+..+++.|+..++-. .++.+-+..|. +.++..+- +.+-|+..
T Consensus 237 A~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~-ilE~aWK~ePH-P~ia~lY~--~ar~gdta 311 (531)
T COG3898 237 AMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSK-ILETAWKAEPH-PDIALLYV--RARSGDTA 311 (531)
T ss_pred HHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhh-HHHHHHhcCCC-hHHHHHHH--HhcCCCcH
Confidence 333222 367888889999999999999999999999999999999999 99999998884 33332221 22222211
Q ss_pred Hh--cccccccCCCccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhccc-ccCCChhhHHH
Q 013948 299 QR--TGWDQTTSSSHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMP-QAQPSQSRQGE 368 (433)
Q Consensus 299 ~a--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~-~~~g~~~~A~~ 368 (433)
.. .....-....+.+.+ ...-+..|+|..|...- +....| ...+|..|+ .+- .+.|+..+...
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p------res~~lLlA-dIeeAetGDqg~vR~ 384 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP------RESAYLLLA-DIEEAETGDQGKVRQ 384 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc------hhhHHHHHH-HHHhhccCchHHHHH
Confidence 11 111111112233333 23345668888877776 666777 345677777 654 45599999999
Q ss_pred HHhhhcCC
Q 013948 369 DSNVSGSD 376 (433)
Q Consensus 369 ~~~~al~l 376 (433)
+..+++.-
T Consensus 385 wlAqav~A 392 (531)
T COG3898 385 WLAQAVKA 392 (531)
T ss_pred HHHHHhcC
Confidence 99999764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.052 Score=52.18 Aligned_cols=155 Identities=10% Similarity=0.011 Sum_probs=95.0
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH---ccCHHHHHHHHHHH-HHhcCCCHHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ---SQQYSDAIELYSFA-IALCGNNAVYYSNRAAA 221 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~---~~~~~~A~~~~~~a-l~~~p~~~~~~~~la~~ 221 (433)
+..+|+.=+.+.+..-.. |.. .-.....+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.+..+|.+
T Consensus 153 diqdydamI~Lve~l~~~-p~~-----~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 153 DIQDYDAMIKLVETLEAL-PTC-----DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred hhhhHHHHHHHHHHhhcc-Ccc-----chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 467777777666554333 222 112235667778888887 89999999999994 45566788999999998
Q ss_pred HHH---------hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hh-------C----CCC
Q 013948 222 YTQ---------IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL-QL-------D----PNN 280 (433)
Q Consensus 222 ~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al-~~-------~----p~~ 280 (433)
|-. ....++|+..|.++.+++|+. ..-.+++.++...|.-.+... -+++.. ++ . -.+
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~-el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSE-ELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchH-HHHHHHHHHHHHHHhhcccccccc
Confidence 843 224789999999999999643 344555556655554333222 122211 11 0 112
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 281 EAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
-...-.+..+....|+++++..+.+++.
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2223334555556677777777666654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.011 Score=54.02 Aligned_cols=125 Identities=8% Similarity=-0.020 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH--HH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG--LA 255 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg--~~ 255 (433)
...-+..+.-....|++.+|...|..++...|++..+...++.||...|+.+.|...+...-.-..+... ....+ ..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~-~~l~a~i~l 212 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAA-HGLQAQIEL 212 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHH-HHHHHHHHH
Confidence 3445556777889999999999999999999999999999999999999999998877764333222211 11112 23
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 256 YYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 256 ~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
+.+.....+.. .+++.+..+|++.++.+.++..+...|+.+.|.....
T Consensus 213 l~qaa~~~~~~--~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll 260 (304)
T COG3118 213 LEQAAATPEIQ--DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLL 260 (304)
T ss_pred HHHHhcCCCHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444333 3677788899999999999999999999999887754
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.016 Score=45.11 Aligned_cols=92 Identities=12% Similarity=0.219 Sum_probs=73.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhhc-----------HHHHHHHHHHHHhcCCCcHHHH
Q 013948 184 QGNRVMQSQQYSDAIELYSFAIALCGNNA---VYYSNRAAAYTQIHQ-----------YAEAVRDCLKSIDIDPNYSKAY 249 (433)
Q Consensus 184 lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~ 249 (433)
++..++..|++-+|++..+..+..++++. ..+...|.++..+.. .-.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46678899999999999999999988876 556667888766553 3458888888899999888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 250 SRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 250 ~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
+.+|.-+.....|+++.. -.+++|.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~-kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVK-KAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHH-HHHHHhcc
Confidence 888887777777888887 77777765
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.13 Score=52.70 Aligned_cols=230 Identities=14% Similarity=0.067 Sum_probs=113.2
Q ss_pred hhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHH------HHHHhhccccccchhhHHHHHHHHHHHHHHccC
Q 013948 120 KDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDA------INEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ 193 (433)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a------l~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 193 (433)
..++++++..++.+-..|...++......++++|+++|++. +++..-. .+......--..|..+...|+
T Consensus 647 de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfa-----fp~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 647 DEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA-----FPEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred cHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHh
Confidence 34556677777777677777777777788899999887753 3332111 011112223345677778888
Q ss_pred HHHHHHHHHHHHHhc------------C-------------CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHH
Q 013948 194 YSDAIELYSFAIALC------------G-------------NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKA 248 (433)
Q Consensus 194 ~~~A~~~~~~al~~~------------p-------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 248 (433)
++.|+.+|-.+-.+- | .-...|-..+.-|...|+|+-|.+.|.++=..+
T Consensus 722 ~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~------ 795 (1636)
T KOG3616|consen 722 LDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFK------ 795 (1636)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhH------
Confidence 888888876542110 0 001123334444444555555554444331110
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCC
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE-AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHG 327 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (433)
.--.+|.+.|+|++|.. .-.+.. .|... ..+...+.-....|++.+|...+.....+ +.....|-+-|.++.
T Consensus 796 --dai~my~k~~kw~da~k-la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p--~~aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 796 --DAIDMYGKAGKWEDAFK-LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEP--DKAIQMYDKHGLDDD 868 (1636)
T ss_pred --HHHHHHhccccHHHHHH-HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCc--hHHHHHHHhhCcchH
Confidence 11123444555555544 333322 12221 22223333344455555555544432211 112223333333332
Q ss_pred CCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhh
Q 013948 328 TPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVS 373 (433)
Q Consensus 328 A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~a 373 (433)
.+... -...| ......+..+| .-+...|+...|.+.|-++
T Consensus 869 mirlv-~k~h~----d~l~dt~~~f~-~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 869 MIRLV-EKHHG----DHLHDTHKHFA-KELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHH-HHhCh----hhhhHHHHHHH-HHHHhccChhHHHHHHHhh
Confidence 22211 11122 23344667777 7788889999998888665
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0082 Score=40.31 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 248 AYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 248 ~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
.++.+|..++++|+|++|.. +.+.+|+++|++..+......+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~-~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARR-YCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHH-HHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHH-HHHHHHhhCCCcHHHHHHHHHHH
Confidence 45666777777777777777 77777777777766655554443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0024 Score=37.99 Aligned_cols=29 Identities=24% Similarity=0.317 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 013948 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 215 ~~~la~~~~~~~~~~~A~~~~~~al~~~p 243 (433)
++.+|.++...|++++|+..|+++++..|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34444444444444444444444444444
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.015 Score=53.65 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHH
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKE 285 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~ 285 (433)
...++=.+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|.. .++..++..|+++.+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~-DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALS-DLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHhCCCchhHHH
Confidence 344555566666666666666666666666666666666666666666666666 66666666666665443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0059 Score=59.73 Aligned_cols=102 Identities=29% Similarity=0.315 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh---cHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH---QYAEAVRDCLKSIDIDPNYSKAYSRLGL 254 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~ 254 (433)
.+-+..-|+-.+..+.+..|+..|.+++...|....++.+++.++++.+ +.-.|+..+..+++++|....+|+.|+.
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 4555556666666778899999999999999999999999999998754 6778999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 255 AYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
++..++++.+|+. +...+....|.+
T Consensus 454 aL~el~r~~eal~-~~~alq~~~Ptd 478 (758)
T KOG1310|consen 454 ALNELTRYLEALS-CHWALQMSFPTD 478 (758)
T ss_pred HHHHHhhHHHhhh-hHHHHhhcCchh
Confidence 9999999999999 766666666643
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.032 Score=46.65 Aligned_cols=105 Identities=13% Similarity=0.006 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...+.....+-...++.+++...+...-.+.|+.+..-..-|+++...|+|.+|+..++.+....|..+.+--.++.|++
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 55677777777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHH
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKE 285 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~ 285 (433)
.+|+.+== . +-.++++..+ ++.+..
T Consensus 90 ~~~D~~Wr-~-~A~evle~~~-d~~a~~ 114 (160)
T PF09613_consen 90 ALGDPSWR-R-YADEVLESGA-DPDARA 114 (160)
T ss_pred HcCChHHH-H-HHHHHHhcCC-ChHHHH
Confidence 99986421 1 3344555444 444433
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0015 Score=63.12 Aligned_cols=82 Identities=13% Similarity=0.014 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------cC---------CCHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIAL---------CG---------NNAVYYSNRAAAYTQIHQYAEAVRDCLKSI 239 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al 239 (433)
.-.|.++|.+++..+.|.-++.+|.+|++. .| ....+.|+.|..|...|++-.|.++|.++.
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 345789999999999999999999999961 11 235789999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHc
Q 013948 240 DIDPNYSKAYSRLGLAYYAQ 259 (433)
Q Consensus 240 ~~~p~~~~~~~~lg~~~~~~ 259 (433)
.....+|..|++++.|+...
T Consensus 363 ~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999998753
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.056 Score=46.52 Aligned_cols=117 Identities=10% Similarity=0.008 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHHHHhccc
Q 013948 230 EAVRDCLKSIDIDPNYS---KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN---EAVKENIRMAEQKLREERQRTGW 303 (433)
Q Consensus 230 ~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~ 303 (433)
+......+...-+|... -+-+.++..+...+++++|+. .++.++....+. .-+-.+|+++....|++++|...
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~a-qL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEA-QLKQALAQTKDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHH-HHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 44455555555565553 345568899999999999999 999998654332 34567889999999999988776
Q ss_pred ccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 304 DQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
... +..+. -.+.....+| .++...|+.++|+..|+++++.+++.
T Consensus 149 L~t---------------------------~~~~~-----w~~~~~elrG-Dill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 149 LDT---------------------------IKEES-----WAAIVAELRG-DILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred Hhc---------------------------ccccc-----HHHHHHHHhh-hHHHHcCchHHHHHHHHHHHHccCCh
Confidence 551 11121 2334456678 99999999999999999999987664
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0067 Score=55.50 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=66.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 181 FKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 181 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
-...+.-....|+.++|...|..|+.+.|++++++..+|......++.-+|-.+|-+|+.++|.+.+++.+.+...
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 3344555678899999999999999999999999999999999999999999999999999999999988876543
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.079 Score=47.68 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=97.5
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS-QQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
..-..|+.+...+|.++|.+ ..+|...-.++... .+..+-++.+.+.+..+|.+..+|..+-.+....|
T Consensus 57 E~S~RAl~LT~d~i~lNpAn----------YTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~ 126 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPAN----------YTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG 126 (318)
T ss_pred ccCHHHHHHHHHHHHhCccc----------chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc
Confidence 35567788888888887776 66666666665443 45677778888888888888888888888888888
Q ss_pred cHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013948 227 QYA-EAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286 (433)
Q Consensus 227 ~~~-~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~ 286 (433)
++. .-++..+.++..+..+-.+|...-.+....+.|+.-+. +..+.|+.+-.+-.+|..
T Consensus 127 d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~-y~~~Lle~Di~NNSAWN~ 186 (318)
T KOG0530|consen 127 DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELA-YADELLEEDIRNNSAWNQ 186 (318)
T ss_pred CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHH-HHHHHHHHhhhccchhhe
Confidence 777 77888888888888888888888888888888888888 778888777666666654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0042 Score=36.91 Aligned_cols=33 Identities=36% Similarity=0.703 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 247 KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 247 ~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
++++.+|.++...|++++|+. .|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~-~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIE-YFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHH-HHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHH-HHHHHHHHCcCC
Confidence 478999999999999999999 999999999974
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.011 Score=58.45 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=91.2
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
..|+...|++++..|+-..|... .-....+++++...|-...|-.++.+++.++...+-.++.+|.+++.+
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~---------~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l 689 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQ---------DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL 689 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhh---------cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH
Confidence 45899999999999999877652 345778899999999999999999999999988899999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
.+.+.|++.++.|++++|+++.+-..|-.+-+
T Consensus 690 ~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 690 KNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999999988777666555
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.036 Score=54.14 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 013948 195 SDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN-YNDAIEKGFKKA 273 (433)
Q Consensus 195 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~~a 273 (433)
..-...|+.|+...+.|+.+|.....-..+.+.+.+--..|.+++..+|+++..|..-|.-.+.-+. .+.|.. .|.++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRa-lflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARA-LFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHH-HHHHH
Confidence 4456788999999999999999988777777779999999999999999999999999998888776 888888 99999
Q ss_pred HhhCCCCHHHHHHHHHH
Q 013948 274 LQLDPNNEAVKENIRMA 290 (433)
Q Consensus 274 l~~~p~~~~~~~~l~~~ 290 (433)
|+.+|+++..|...-+.
T Consensus 167 LR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFRM 183 (568)
T ss_pred hhcCCCChHHHHHHHHH
Confidence 99999999888765443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.028 Score=51.84 Aligned_cols=79 Identities=11% Similarity=0.056 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
.....++-.++...++++.|+.+.+..+.+.|+++.-+-.+|.+|.++|.+..|...++..++..|+++.+-.....+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 4456667778899999999999999999999999999999999999999999999999999999999998776655544
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.011 Score=54.14 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=66.3
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 217 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
+.|.-..+.|+.++|...|+.|+.++|+++.++..+|......++.-+|-. +|-+||.++|.+.+++.+..+..
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq-~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQ-CYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhh-hhheeeeeCCCchHHHhhhhccc
Confidence 344445678999999999999999999999999999999999999999999 99999999999999888776553
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.07 Score=43.01 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHHhh---cHHHHHHHHHHHHh-cCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHH
Q 013948 211 NAVYYSNRAAAYTQIH---QYAEAVRDCLKSID-IDPN-YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKE 285 (433)
Q Consensus 211 ~~~~~~~la~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~ 285 (433)
.....+++|+++.+.. +..+.+.+++..++ -.|+ .-+..+.|+..+++.++|+.++. +....++..|++.++..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~-yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLR-YVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHH-HHHHHHhhCCCcHHHHH
Confidence 4577889999998765 45778889999986 4454 45788889999999999999999 99999999999998876
Q ss_pred HHHHHHHHH
Q 013948 286 NIRMAEQKL 294 (433)
Q Consensus 286 ~l~~~~~~~ 294 (433)
.--.+.-++
T Consensus 110 Lk~~ied~i 118 (149)
T KOG3364|consen 110 LKETIEDKI 118 (149)
T ss_pred HHHHHHHHH
Confidence 655554443
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.063 Score=42.17 Aligned_cols=98 Identities=16% Similarity=0.239 Sum_probs=74.1
Q ss_pred HHHHHHHHH--HHHHccCHHHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc--
Q 013948 178 AEIFKCQGN--RVMQSQQYSDAIELYSFAIALCGN------------NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-- 241 (433)
Q Consensus 178 ~~~~~~lg~--~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-- 241 (433)
+.+|..|+. -.+..|-|++|...+.+|++.... ++-++-.|+.++..+|+|++++....++|..
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 455655554 456779999999999999987533 2557888999999999999998888888754
Q ss_pred -----CCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 242 -----DPNY----SKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 242 -----~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
+.+. ..+.+..|..+..+|+.++|+. .|+.+-+.
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~-~fr~agEM 129 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALK-EFRMAGEM 129 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHH-HHHHHHHH
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHH-HHHHHHHH
Confidence 4443 3455678999999999999999 99987653
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.095 Score=50.03 Aligned_cols=164 Identities=5% Similarity=-0.073 Sum_probs=104.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 013948 199 ELYSFAIALCGNNAVYYSNRAAAYTQIHQ------------YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAI 266 (433)
Q Consensus 199 ~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 266 (433)
.-|++.++.+|.|..+|..+....-..-. .+.-+..|++|++.+|++...+..+=.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778888889998888888765544322 456778888999999988888888877888888888878
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH-HHH--HHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCc
Q 013948 267 EKGFKKALQLDPNNEAVKENIRMAEQK-LRE--ERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPT 343 (433)
Q Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~ 343 (433)
. -+++++..+|++..+|..+-..... ... .......+..+....... ..+. ..-..++.....
T Consensus 86 ~-~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~------~~~~-------~~~~~~~~~~e~ 151 (321)
T PF08424_consen 86 K-KWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRR------RSGR-------MTSHPDLPELEE 151 (321)
T ss_pred H-HHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh------hccc-------cccccchhhHHH
Confidence 7 8899999899888877665433222 111 222222222111000000 0000 000001111112
Q ss_pred cHHHHHHHHhhcccccCCChhhHHHHHhhhcCCC
Q 013948 344 DIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 344 ~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~ 377 (433)
.....+..+. ..+.+.|-.+.|+..++..++++
T Consensus 152 ~~l~v~~r~~-~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 152 FMLYVFLRLC-RFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHH-HHHHHCCchHHHHHHHHHHHHHH
Confidence 5666777888 88999999999999999998874
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.034 Score=42.11 Aligned_cols=64 Identities=23% Similarity=0.184 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCC
Q 013948 198 IELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY--SKAYSRLGLAYYAQGN 261 (433)
Q Consensus 198 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~ 261 (433)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.++++ ..+.-.+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 456677777777777777777777777777777777777777777655 3333333334444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0066 Score=37.19 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=12.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Q 013948 181 FKCQGNRVMQSQQYSDAIELYSFA 204 (433)
Q Consensus 181 ~~~lg~~~~~~~~~~~A~~~~~~a 204 (433)
+..+|.++...|+|++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555555555555553
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.014 Score=39.21 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 213 VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 213 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
++++.+|..+.++|+|++|..+++.++++.|+|..+.....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 35666777777777777777777777777777766554433
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.15 Score=47.81 Aligned_cols=130 Identities=20% Similarity=0.119 Sum_probs=97.9
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ----SQQYSDAIELYSFAIALCGNN-AVYYSNRAAAY 222 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 222 (433)
.+..+|..+|+.+... ..+.+.+.+|..+.. ..++.+|...|.+|....-.. ..+.+.+|.+|
T Consensus 91 ~~~~~A~~~~~~~a~~------------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~ 158 (292)
T COG0790 91 RDKTKAADWYRCAAAD------------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAY 158 (292)
T ss_pred ccHHHHHHHHHHHhhc------------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 5688888888854442 126678889988876 458999999999998875333 34488888888
Q ss_pred HHhh-------cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 223 TQIH-------QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA----QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 223 ~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
..-. +...|+..|.++.... ++.+.+.+|.+|.. ..++.+|.. +|.++.+... ....+.++ ++
T Consensus 159 ~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~-wy~~Aa~~g~--~~a~~~~~-~~ 232 (292)
T COG0790 159 LSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFR-WYKKAAEQGD--GAACYNLG-LM 232 (292)
T ss_pred HcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHH-HHHHHHHCCC--HHHHHHHH-HH
Confidence 7641 3347899999888876 88899999988866 348899999 9999998776 77778888 55
Q ss_pred HHHH
Q 013948 292 QKLR 295 (433)
Q Consensus 292 ~~~~ 295 (433)
...|
T Consensus 233 ~~~g 236 (292)
T COG0790 233 YLNG 236 (292)
T ss_pred HhcC
Confidence 5444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0061 Score=37.36 Aligned_cols=25 Identities=44% Similarity=0.740 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al 274 (433)
|..||.+|..+|+|++|+. +|+++|
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~-~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIE-YYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHH-HHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence 4556666666666666666 666644
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0065 Score=35.12 Aligned_cols=29 Identities=31% Similarity=0.542 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 013948 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 215 ~~~la~~~~~~~~~~~A~~~~~~al~~~p 243 (433)
++.+|.++...+++++|+..++++++++|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444444444444444444444444433
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.38 Score=44.93 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=97.1
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhc----CCC---------
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ-QYSDAIELYSFAIALC----GNN--------- 211 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~----p~~--------- 211 (433)
..|+++.|..++.|+-...+. ..+..-...+..+++.|......+ +++.|+..++++.++- +.+
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~--~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNS--LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhc--CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 369999999999999877631 112223556889999999999999 9999999999999883 111
Q ss_pred -HHHHHHHHHHHHHhhcHH---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 212 -AVYYSNRAAAYTQIHQYA---EAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 212 -~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
..++..++.+|...+.++ +|....+.+-.-.|+.+..+...=.++...++.+++.+ .+.+.+..-+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~-~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEE-ILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHH-HHHHHHHhcc
Confidence 356778899999888654 45555566666678888777555555555888999988 8888887544
|
It is also involved in sporulation []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.034 Score=58.64 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
+..|..+|......|...+|++.|-+| +++..|...-.+..+.|.|++-+.++..+-+.
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 778999999999999999999999875 57778888888888999999988888777554
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.11 Score=49.77 Aligned_cols=112 Identities=15% Similarity=0.222 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-------------C-----HHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGN-------------N-----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------------~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
+-..-|..++++++|..|..-|..++++..+ + ..+-..+..||+.+++.+.|+....+.|-+
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence 3334455667778888888888888776432 1 234667899999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHH
Q 013948 242 DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL---QLDPNNEAVKENIRMAEQ 292 (433)
Q Consensus 242 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al---~~~p~~~~~~~~l~~~~~ 292 (433)
+|.+...++..|.|+..+.+|.+|.. .+.-+. -++..+..-...+-..|+
T Consensus 258 nP~~frnHLrqAavfR~LeRy~eAar-Samia~ymywl~g~~~q~~S~lIklyW 310 (569)
T PF15015_consen 258 NPSYFRNHLRQAAVFRRLERYSEAAR-SAMIADYMYWLSGGSEQRISKLIKLYW 310 (569)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchHhHHHHHHHHH
Confidence 99999999999999999999999988 655543 344444444333444443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.045 Score=53.49 Aligned_cols=90 Identities=13% Similarity=0.202 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-HHH
Q 013948 152 KASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ-YAE 230 (433)
Q Consensus 152 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~ 230 (433)
.-..+|+.|+..++.+ ...|........+.+.+.+--..|.+++..+|+++.+|..-|.-.+..+. .+.
T Consensus 89 rIv~lyr~at~rf~~D----------~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~s 158 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGD----------VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIES 158 (568)
T ss_pred HHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHH
Confidence 3456789999988876 77888877777777889999999999999999999999999988888776 899
Q ss_pred HHHHHHHHHhcCCCcHHHHHH
Q 013948 231 AVRDCLKSIDIDPNYSKAYSR 251 (433)
Q Consensus 231 A~~~~~~al~~~p~~~~~~~~ 251 (433)
|...+.++|+.+|+++..|..
T Consensus 159 aRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 159 ARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred HHHHHHHHhhcCCCChHHHHH
Confidence 999999999999999987764
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0089 Score=34.52 Aligned_cols=33 Identities=52% Similarity=0.864 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 247 KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 247 ~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
.+++.+|.++...+++++|+. +++++++++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~-~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALE-YYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHH-HHHHHHccCCCC
Confidence 478899999999999999999 999999998863
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.086 Score=47.03 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=68.9
Q ss_pred HccCHHHHHHHHHHHHHh----cCC---CHHHHHHHHHHHHHhhcHHH-------HHHHHHHHHhcCCC------cHHHH
Q 013948 190 QSQQYSDAIELYSFAIAL----CGN---NAVYYSNRAAAYTQIHQYAE-------AVRDCLKSIDIDPN------YSKAY 249 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~----~p~---~~~~~~~la~~~~~~~~~~~-------A~~~~~~al~~~p~------~~~~~ 249 (433)
....+++|++.|.-|+-. ... -+.++..+|++|...|+.+. |+..|.++++.... .....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 345677777777766532 111 25788899999999998554 55555555554322 35788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC-HHHHHHHHH
Q 013948 250 SRLGLAYYAQGNYNDAIEKGFKKALQLDPNN-EAVKENIRM 289 (433)
Q Consensus 250 ~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~-~~~~~~l~~ 289 (433)
+.+|.+.++.|++++|.. +|.+++...... +.....+++
T Consensus 169 YLigeL~rrlg~~~eA~~-~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKR-WFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHhCCHHHHHH-HHHHHHcCCCCCCcHHHHHHHH
Confidence 899999999999999999 999999764333 245555554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.21 Score=48.06 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc--C-C-----
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN----NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI--D-P----- 243 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~-p----- 243 (433)
.....|...+.+..+.|+++.|...+.++...++. .+.+.+..+.+++..|+..+|+..++..+.. . +
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 34788999999999999999999999999876522 5678888999999999999999999888871 1 1
Q ss_pred --------------------------CcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 244 --------------------------NYSKAYSRLGLAYYAQ------GNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 244 --------------------------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
....+++.+|...... +..++++. .|+++++++|....+|..+|..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILK-YYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHH-HHHHHHHhChhHHHHHHHHHHHH
Confidence 0245666777777777 88889999 99999999999999999999888
Q ss_pred HHHHHHH
Q 013948 292 QKLREER 298 (433)
Q Consensus 292 ~~~~~~~ 298 (433)
..+-...
T Consensus 303 ~~~~~~~ 309 (352)
T PF02259_consen 303 DKLLESD 309 (352)
T ss_pred HHHHHhh
Confidence 7665544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.61 Score=46.36 Aligned_cols=175 Identities=8% Similarity=-0.037 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc--------------HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcC---
Q 013948 199 ELYSFAIALCGNNAVYYSNRAAAYTQIHQ--------------YAEAVRDCLKSIDIDPN-YSKAYSRLGLAYYAQG--- 260 (433)
Q Consensus 199 ~~~~~al~~~p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g--- 260 (433)
-.|++++..-+-.+.+|+..+.-+...++ -+++..+|++++..--. +.-.++.++.--...-
T Consensus 266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n 345 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDN 345 (656)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc
Confidence 35677777778888888887777776666 68888889888876322 3333333333322222
Q ss_pred CHHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHHHHHhcccccccCCCccch----hh---hhhhcCCCCCCCCCcc
Q 013948 261 NYNDAIEKGFKKALQLDPNNEA-VKENIRMAEQKLREERQRTGWDQTTSSSHYSQ----ES---NQSTGGFRSHGTPPSF 332 (433)
Q Consensus 261 ~~~~A~~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~---~~~~~~~~~~~A~~~~ 332 (433)
+++..-. .+++++.+...++. ++..+-..-.+..-...|...+.++....... .. --|.-.++..-|...|
T Consensus 346 ~~~~~~~-~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIF 424 (656)
T KOG1914|consen 346 KEKKVHE-IYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIF 424 (656)
T ss_pred hhhhhHH-HHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHH
Confidence 2556666 77777776544433 34444333333333344444444443222111 11 1244457788888888
Q ss_pred --cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC--CCCc
Q 013948 333 --TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD--EPGI 380 (433)
Q Consensus 333 --al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l--~P~~ 380 (433)
.+...+ +.+..-+... ..+..+|+-..|...|++++.. .|+-
T Consensus 425 eLGLkkf~-----d~p~yv~~Yl-dfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 425 ELGLKKFG-----DSPEYVLKYL-DFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred HHHHHhcC-----CChHHHHHHH-HHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 888888 8888888888 8888899999999999999876 5443
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.41 Score=46.88 Aligned_cols=152 Identities=16% Similarity=0.074 Sum_probs=105.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-C--HHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN-N--AVYYSNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~ 223 (433)
.|++.+|+.....+.+.....+.+.......+..++.+|......+-|+.|...|..|++.... + +-+..++|.+|.
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL 415 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL 415 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Confidence 3889999888887777655543322233445778889999999999999999999999987543 2 445678899999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC------HHHHHHH
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNY----------SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN------EAVKENI 287 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~------~~~~~~l 287 (433)
..++-+.-.+.++ .+.|.+ ..+++..|...+.++++.+|.. .+.+.++..... ...+..|
T Consensus 416 ~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~-~l~e~Lkmanaed~~rL~a~~LvLL 491 (629)
T KOG2300|consen 416 RIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKR-FLRETLKMANAEDLNRLTACSLVLL 491 (629)
T ss_pred HhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHhhcchhhHHHHHHHHHHHH
Confidence 9877544333333 334442 4577788899999999999999 999999876211 1223344
Q ss_pred HHHHHHHHHHHHhcc
Q 013948 288 RMAEQKLREERQRTG 302 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~ 302 (433)
+.+...+|+..++..
T Consensus 492 s~v~lslgn~~es~n 506 (629)
T KOG2300|consen 492 SHVFLSLGNTVESRN 506 (629)
T ss_pred HHHHHHhcchHHHHh
Confidence 555555555554433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.41 Score=41.35 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC--cH---
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN--YS--- 246 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~--- 246 (433)
.....++..+|..|.+.|+++.|++.|.++.+..... .+.++++-.+....+++.....+..++-.+-.. +.
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 4446789999999999999999999999988765443 567888888999999999999999998776322 22
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 247 -KAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 247 -~~~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
.....-|..+...++|.+|.. .|-.++.
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~-~fl~~~~ 141 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAE-LFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHH-HHHccCc
Confidence 233445777888899999998 8776653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.011 Score=51.98 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=29.2
Q ss_pred HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc
Q 013948 190 QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY 245 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 245 (433)
..++.+.|.+.|.+++.+-|+...-|+.+|....+.|+++.|...|++.++++|.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44455555555555555555555555555555555555555555555555555544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.19 Score=51.84 Aligned_cols=245 Identities=13% Similarity=0.023 Sum_probs=146.9
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ-----QYSDAIELYSFAIALCGNNAVYYSNRAA 220 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~la~ 220 (433)
...|.+.|+.+++.+........ ....+.+.+.+|.+|.... ++..|+.+|.++-+.. ++.+.+.+|.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a-----~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~ 333 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAA-----TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGV 333 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHH-----hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHH
Confidence 35799999999999987211110 0012457888999998743 7889999999998765 6788888999
Q ss_pred HHHHhh---cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 221 AYTQIH---QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ----GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 221 ~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
++..-. ++..|.++|..|... .+..+.+.+|.||..- .+...|.. +++++.+.+ .+.+...++..+..
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~-~~k~aA~~g--~~~A~~~~~~~~~~ 408 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFA-YYKKAAEKG--NPSAAYLLGAFYEY 408 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHH-HHHHHHHcc--ChhhHHHHHHHHHH
Confidence 998766 578999999999875 5778999999998763 57899999 999999887 45555555544433
Q ss_pred H-HHHHHhccccc--ccCC-CccchhhhhhhcCC-----------CCCCCCCcccccCCCCCCCccHHHHHHHHhhcccc
Q 013948 294 L-REERQRTGWDQ--TTSS-SHYSQESNQSTGGF-----------RSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQ 358 (433)
Q Consensus 294 ~-~~~~~a~~~~~--~~~~-~~~~~~~~~~~~~~-----------~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~ 358 (433)
. +....+...+. +... .........+...+ +..-+...+.-.... .++.+...+| .+|.
T Consensus 409 g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----g~~~a~~~lg-d~y~ 482 (552)
T KOG1550|consen 409 GVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ-----GNADAILKLG-DYYY 482 (552)
T ss_pred ccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc-----cCHHHHhhhc-ceee
Confidence 2 33332222211 1110 00000011111111 000011111111222 5567777788 6665
Q ss_pred cC----CChhhHHHHHhhhcCCCCCccccccccccc-ccCCcHHHHHHHHHHHhhcC
Q 013948 359 AQ----PSQSRQGEDSNVSGSDEPGIRIGGNINLNF-GENMPEDITGALRSMMEMFS 410 (433)
Q Consensus 359 ~~----g~~~~A~~~~~~al~l~P~~~~~~~~~~~l-~~~~~~~~~~a~~~~~~~~~ 410 (433)
.- .+++.|...|.++-... -....|+..-. ++...+.+.-+.+.+.....
T Consensus 483 ~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 483 YGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred ecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 43 45889999999987666 33333333222 13333335556666655543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.055 Score=40.97 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHH
Q 013948 231 AVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN--EAVKENIRMAEQKLREE 297 (433)
Q Consensus 231 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~ 297 (433)
.+..+++.+..+|++..+.+.+|..+...|++++|++ .+-.+++.+++. ..+...+-.+...+|..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~-~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALD-QLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHH-HHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4678899999999999999999999999999999999 999999998764 67777777777777763
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.18 Score=51.91 Aligned_cols=143 Identities=16% Similarity=0.145 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHh-----cCCCHHHHHHH
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS-----QQYSDAIELYSFAIAL-----CGNNAVYYSNR 218 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~-----~~~~~A~~~~~~al~~-----~p~~~~~~~~l 218 (433)
+...+..+++.+....- ..+...+|.+++.- ++.+.|+.+|..+... .-..+.+.+.+
T Consensus 227 ~~~~a~~~~~~~a~~g~------------~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~l 294 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH------------SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGL 294 (552)
T ss_pred hhhHHHHHHHHHHhhcc------------hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHH
Confidence 45678888888776522 66788888887643 6899999999999771 11256788899
Q ss_pred HHHHHHhh-----cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013948 219 AAAYTQIH-----QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG---NYNDAIEKGFKKALQLDPNNEAVKENIRMA 290 (433)
Q Consensus 219 a~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~~al~~~p~~~~~~~~l~~~ 290 (433)
|.+|.+.. ++..|+.+|.++-.+ .++.+.+.+|.++.... ++..|.+ +|..|.+. .+..+.+.++.|
T Consensus 295 g~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~-yy~~Aa~~--G~~~A~~~la~~ 369 (552)
T KOG1550|consen 295 GRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFE-YYSLAAKA--GHILAIYRLALC 369 (552)
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHH-HHHHHHHc--CChHHHHHHHHH
Confidence 99998843 788899999999987 45668899999998766 6789999 99998864 678899999999
Q ss_pred HHHH----HHHHHhcccccccC
Q 013948 291 EQKL----REERQRTGWDQTTS 308 (433)
Q Consensus 291 ~~~~----~~~~~a~~~~~~~~ 308 (433)
+..- .+...|..|+.++.
T Consensus 370 y~~G~gv~r~~~~A~~~~k~aA 391 (552)
T KOG1550|consen 370 YELGLGVERNLELAFAYYKKAA 391 (552)
T ss_pred HHhCCCcCCCHHHHHHHHHHHH
Confidence 8743 23566666665544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.15 Score=42.02 Aligned_cols=85 Identities=15% Similarity=-0.035 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
..+......-....+.+++...+...--+.|+.+.+-..-|.++...|+|.+|+..++...+-.+..+.+.-.++.|++-
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 34444445555688999999999998889999999999999999999999999999999999998999999999999999
Q ss_pred cCCHH
Q 013948 259 QGNYN 263 (433)
Q Consensus 259 ~g~~~ 263 (433)
+|+.+
T Consensus 91 l~Dp~ 95 (153)
T TIGR02561 91 KGDAE 95 (153)
T ss_pred cCChH
Confidence 99854
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.13 Score=51.81 Aligned_cols=98 Identities=12% Similarity=0.188 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 251 (433)
...+++-|.-+++.++|..+++.|...+..-|.| +...-+++.||..+.+.+.|.++++.|-+.+|.++-....
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 4556677778889999999999999999877665 4567788999999999999999999999999999999998
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 252 LGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 252 lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
+-.+....+.-++|+. +..+....
T Consensus 434 ~~~~~~~E~~Se~AL~-~~~~~~s~ 457 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALT-CLQKIKSS 457 (872)
T ss_pred HHHHHHHhcchHHHHH-HHHHHHhh
Confidence 8888889999999998 87766543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.12 Score=43.22 Aligned_cols=86 Identities=10% Similarity=0.042 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
...+.....+-...++.+++...+...--+.|..+..-..-|.++...|+|.+|+. .|+.+..-.|..+-+.-.++.|+
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~r-lLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALR-LLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHH-HHHHHhccCCCChHHHHHHHHHH
Confidence 34566677777888899999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHH
Q 013948 292 QKLREER 298 (433)
Q Consensus 292 ~~~~~~~ 298 (433)
..+++..
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 8888744
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.38 Score=46.30 Aligned_cols=129 Identities=18% Similarity=0.179 Sum_probs=98.5
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-cC-C-----------
Q 013948 144 NDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL-CG-N----------- 210 (433)
Q Consensus 144 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p-~----------- 210 (433)
....|.++.|...+.++....+... ...+...+..+..+...|+..+|+..++..+.. .. .
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~------~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~ 229 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSE------SLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKS 229 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCccc------CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhh
Confidence 3357999999999999888654331 112677888899999999999999999888871 11 0
Q ss_pred ---------------------CHHHHHHHHHHHHHh------hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-
Q 013948 211 ---------------------NAVYYSNRAAAYTQI------HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNY- 262 (433)
Q Consensus 211 ---------------------~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~- 262 (433)
.+.++..+|...... +..++++..|.++++++|....+|+.+|..+...-+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~ 309 (352)
T PF02259_consen 230 GLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESD 309 (352)
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhh
Confidence 034566777777777 7889999999999999999999999999988765222
Q ss_pred ----------------HHHHHHHHHHHHhhCCC
Q 013948 263 ----------------NDAIEKGFKKALQLDPN 279 (433)
Q Consensus 263 ----------------~~A~~~~~~~al~~~p~ 279 (433)
..|+. .|-+++.+.+.
T Consensus 310 ~~~~~~~~~~~~~~~~~~ai~-~y~~al~~~~~ 341 (352)
T PF02259_consen 310 PREKEESSQEDRSEYLEQAIE-GYLKALSLGSK 341 (352)
T ss_pred hhcccccchhHHHHHHHHHHH-HHHHHHhhCCC
Confidence 23677 78888887776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.3 Score=47.33 Aligned_cols=122 Identities=13% Similarity=0.009 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------cCC------------C---HHHHHHHHHHHHHh
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL--------------CGN------------N---AVYYSNRAAAYTQI 225 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------------~p~------------~---~~~~~~la~~~~~~ 225 (433)
|...+++..++.++..+|+++.|.+.+++|+-. ++. | ..+.+.....+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 444999999999999999999999999999732 111 1 23566677888899
Q ss_pred hcHHHHHHHHHHHHhcCCC-cHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHHHHH
Q 013948 226 HQYAEAVRDCLKSIDIDPN-YSK-AYSRLGLAYYAQGNYNDAIEKGFKKALQLDP-----NNEAVKENIRMAEQKLREE 297 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~-~~~-~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p-----~~~~~~~~l~~~~~~~~~~ 297 (433)
|.+..|+++++-.++++|. +|- +.+.+=....+.++|+--+. .++....... .-|...+.++.++..+++.
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~-~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~ 194 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLID-FSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKE 194 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHH-HHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCc
Confidence 9999999999999999999 764 44445555577888887777 6665544211 1345677778888887776
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.56 E-value=2 Score=40.00 Aligned_cols=127 Identities=14% Similarity=0.058 Sum_probs=80.2
Q ss_pred c-hHHHHHHHHHHHHHHHhh---cccc-ccchhhHHHHHHHHHHHHHHccCHH---HHHHHHHHHHHhcCCCHHHHHHHH
Q 013948 148 S-QVDKASRIFHDAINEMEK---SGAH-AYNQKNLAEIFKCQGNRVMQSQQYS---DAIELYSFAIALCGNNAVYYSNRA 219 (433)
Q Consensus 148 g-~~~~A~~~~~~al~~~p~---~~~~-~~~~~~~~~~~~~lg~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~la 219 (433)
+ +++.|+.+++++++.... .... +....-...++..++.++...+.++ +|....+.+-...|+.+..+...=
T Consensus 49 ~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l 128 (278)
T PF08631_consen 49 KDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKL 128 (278)
T ss_pred CCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 5 899999999999998533 1111 1122345677888999999887654 455555555556787777775555
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCC-CcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHh
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDP-NYSKAYSRLGLA-YYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~-~~~~g~~~~A~~~~~~~al~ 275 (433)
.++.+.++.+++.+.+.+.+..-+ .....-..+..+ .........+.. ++...+.
T Consensus 129 ~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~-~ld~~l~ 185 (278)
T PF08631_consen 129 EILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAF-CLDYLLL 185 (278)
T ss_pred HHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHH-HHHHHHH
Confidence 555568899999999999988754 222222222222 122344556666 7766664
|
It is also involved in sporulation []. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.63 Score=44.43 Aligned_cols=110 Identities=6% Similarity=-0.031 Sum_probs=84.1
Q ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 013948 156 IFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ------------QYSDAIELYSFAIALCGNNAVYYSNRAAAYT 223 (433)
Q Consensus 156 ~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 223 (433)
-+++.+..+|.+ ..+|..+....-..- -.+.-+..|++||+.+|++..++..+=.+..
T Consensus 7 el~~~v~~~P~d----------i~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~ 76 (321)
T PF08424_consen 7 ELNRRVRENPHD----------IEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGE 76 (321)
T ss_pred HHHHHHHhCccc----------HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 466777777777 778887776543321 2567788999999999999999998888888
Q ss_pred HhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhh
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA---QGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~~al~~ 276 (433)
+..+.++...-+++++..+|.++..|...-..... .-.++.... .|.+++..
T Consensus 77 ~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~-~y~~~l~~ 131 (321)
T PF08424_consen 77 KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRD-VYEKCLRA 131 (321)
T ss_pred HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHH
Confidence 88899999999999999999998888765433322 335677777 77777653
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.27 Score=49.28 Aligned_cols=129 Identities=16% Similarity=0.031 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHH
Q 013948 153 ASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAV 232 (433)
Q Consensus 153 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 232 (433)
++..+...+..++.+ +...-+.+ +...+...+....+.-.+..++..+|++..++.++|.++...|....++
T Consensus 50 ~~~a~~~~~~~~~~~-------~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~ 121 (620)
T COG3914 50 AIYALLLGIAINDVN-------PELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLAL 121 (620)
T ss_pred HHHHHHccCccCCCC-------HHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHH
Confidence 444444444544443 33333444 6777778899989999999999999999999999999998888776666
Q ss_pred HHHHH-HHhcCCCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013948 233 RDCLK-SIDIDPNYSKAYSRL------GLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA 290 (433)
Q Consensus 233 ~~~~~-al~~~p~~~~~~~~l------g~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~ 290 (433)
..+.. +....|++......+ |.....+|+..++.. .+.++..+.|.++.+...+...
T Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 122 ADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAEL-ALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhhhhhhhhHhHHHHH
Confidence 66655 899999987766665 888888999999999 9999999999987766555544
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.045 Score=50.31 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=77.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 200 LYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSR-LGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 200 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
.|.++....|+|+..|...+.-..+.|.|.+--..|.+++..+|.+.+.|.. .+.-+...++++.+.. .|.+++.++|
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra-~f~~glR~N~ 173 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRA-MFLKGLRMNS 173 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHH-HHHhhhccCC
Confidence 4566667789999999999888888999999999999999999999999988 5666888999999999 9999999999
Q ss_pred CCHHHHHHHHH
Q 013948 279 NNEAVKENIRM 289 (433)
Q Consensus 279 ~~~~~~~~l~~ 289 (433)
.+|..|...-+
T Consensus 174 ~~p~iw~eyfr 184 (435)
T COG5191 174 RSPRIWIEYFR 184 (435)
T ss_pred CCchHHHHHHH
Confidence 99988876543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.028 Score=49.42 Aligned_cols=61 Identities=18% Similarity=0.388 Sum_probs=56.7
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
....+.++.+.|.+.|.+++.+.|++...|+++|....+.|+++.|.. .|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~-a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAA-AYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHH-HHHHHHcCCcccc
Confidence 345678899999999999999999999999999999999999999999 9999999999863
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.14 E-value=1 Score=44.21 Aligned_cols=158 Identities=13% Similarity=0.112 Sum_probs=106.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchh----hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---CC-------CH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQK----NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC---GN-------NA 212 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~-------~~ 212 (433)
.|-+++|.++-.++|....+........+ -....+-.+..|-.-.|++.+|++....+.+.. |. .+
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 48899999999999887544321110111 112234456667778999999999888776653 33 35
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC---------
Q 013948 213 VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN---YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN--------- 280 (433)
Q Consensus 213 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~--------- 280 (433)
.+++.+|.-....+.++.|...|..|.++-.. ...+..++|.+|.+.|+-+.-.+ .++. +.|.+
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~-~ld~---i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYK-ALDL---IGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHH-HHHh---cCCCCCCcchHHHH
Confidence 67888898888899999999999999987433 34566779999999887655444 3333 34442
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 281 -EAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 281 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
..+++..|......+++.+|........
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~L 472 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETL 472 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 2344555655666777888877765433
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.57 Score=47.01 Aligned_cols=111 Identities=17% Similarity=0.048 Sum_probs=87.6
Q ss_pred ccCHHHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 013948 191 SQQYSDAIELYSFAIALCGNNAVYYSN--RAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268 (433)
Q Consensus 191 ~~~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 268 (433)
.+....++..+...+.+++.++.++.. +...+...+....+......++..+|++..+..+||.+....|....+...
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD 123 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH
Confidence 344445788888888889988876443 477788889999999999999999999999999999999888877777762
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 013948 269 GFKKALQLDPNNEAVKENIRMAEQKLREERQRTG 302 (433)
Q Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 302 (433)
+.+.+....|++......+-.++. ++++..+..
T Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 156 (620)
T COG3914 124 ISEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKLLG 156 (620)
T ss_pred HHHHHHhcCcchHHHHhhHHHHHH-HHHHHHHhc
Confidence 445589999999998888866666 666555444
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.89 Score=43.77 Aligned_cols=133 Identities=8% Similarity=0.087 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH------------HccCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 013948 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM------------QSQQYSDAIELYSFAIALCGNNAVYYSNR 218 (433)
Q Consensus 151 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l 218 (433)
+++++.-.+.+..+|.. ..+|+..-.++. ...-+++-+.+...+++.+|++..+|+.+
T Consensus 46 ~e~l~lt~~ll~~npe~----------~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR 115 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEF----------YTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHR 115 (421)
T ss_pred hHHHHHHHHHHhhCchh----------hhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHH
Confidence 35677777777777664 455554333322 22346777888899999999999999999
Q ss_pred HHHHHHhh--cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013948 219 AAAYTQIH--QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN----YNDAIEKGFKKALQLDPNNEAVKENIRMAEQ 292 (433)
Q Consensus 219 a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (433)
.+++.+.+ ++..=++.+.++++.+|.+-.+|...-.+...... ..+-++ +..+++.-++.|-.+|.....+..
T Consensus 116 ~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~-ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 116 KWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE-FTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH-HHHHHHhccchhhhHHHHHHHHHH
Confidence 99999877 46888999999999999998888777666655433 456666 788888889999999998887766
Q ss_pred HH
Q 013948 293 KL 294 (433)
Q Consensus 293 ~~ 294 (433)
.+
T Consensus 195 ~l 196 (421)
T KOG0529|consen 195 TL 196 (421)
T ss_pred Hh
Confidence 33
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.11 Score=51.17 Aligned_cols=91 Identities=16% Similarity=0.055 Sum_probs=78.3
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS---QQYSDAIELYSFAIALCGNNAVYYSNRAAAY 222 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 222 (433)
..+.+..++..|.++++..|.. ...+.+.+.++++. |+.-.|+.-...|++++|....+|+.|+.++
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~----------~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL 455 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDA----------IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARAL 455 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccch----------hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHH
Confidence 3578889999999999998876 77777788877765 4666788888999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCcH
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNYS 246 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~~ 246 (433)
.+++++.+|+.+...+....|.+.
T Consensus 456 ~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 456 NELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHhhHHHhhhhHHHHhhcCchhh
Confidence 999999999999999888888553
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=94.87 E-value=1.5 Score=34.65 Aligned_cols=95 Identities=14% Similarity=0.136 Sum_probs=68.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccc-cccchhh-HHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hcCCC----HH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGA-HAYNQKN-LAEIFKCQGNRVMQSQQYSDAIELYSFAIA-------LCGNN----AV 213 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-------~~p~~----~~ 213 (433)
.|.|++|..-++++++.....+. ..+++.. .+-.+-.|+..+...|+|++++..-.++|. ++.+. ..
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 48899999999999998765532 2223222 255667788889999999998877777764 34443 34
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
+.+++|.++..+|+.++|+..|+++-++
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 5678899999999999999999998765
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.86 E-value=2.1 Score=38.20 Aligned_cols=109 Identities=12% Similarity=-0.003 Sum_probs=75.6
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCH-------HHHHHHHHHHHHhcCC-----
Q 013948 143 GNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQY-------SDAIELYSFAIALCGN----- 210 (433)
Q Consensus 143 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~-------~~A~~~~~~al~~~p~----- 210 (433)
.....-.+++|++.|.-|+-...-.. ..+...+..+..+|-+|...|+- ..|++.|.+++.....
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~---~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~ 162 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKK---EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGM 162 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCc
Confidence 33345689999999998887543221 11234577888888888888884 4566666666654322
Q ss_pred -CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH-HHHHHHHH
Q 013948 211 -NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS-KAYSRLGL 254 (433)
Q Consensus 211 -~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~ 254 (433)
...+.+.+|.+..+.|++++|..+|.+++....... .....+|.
T Consensus 163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 257889999999999999999999999998743332 34444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.32 Score=49.87 Aligned_cols=36 Identities=3% Similarity=-0.081 Sum_probs=32.2
Q ss_pred cHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 344 DIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 344 ~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
..++++..++ ..+...|++++|-++|-.+++++.-+
T Consensus 993 k~~~vhlk~a-~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 993 KMGEVHLKLA-MFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred cCccchhHHh-hhhhhccchhhhhHhhHHHhhccccc
Confidence 4557888899 88999999999999999999999877
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.93 Score=45.97 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENI 287 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l 287 (433)
++.+-|.-.++..+|..++++|...++.-|. .......++.||..+.+.+.|.+ +++.|-+.+|.++-....+
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E-~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVE-VYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHhhccccHHHHHHH
Confidence 4556677788999999999999999988665 36778889999999999999999 9999999999999888888
Q ss_pred HHHHHHHHHHHHhcccccccC
Q 013948 288 RMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~~~ 308 (433)
-.+....+..++|.....+..
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHH
Confidence 888888888888888766554
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.75 Score=37.22 Aligned_cols=74 Identities=11% Similarity=0.102 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHc---cCHHHHHHHHHHHHH-hcCCC-HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHH
Q 013948 178 AEIFKCQGNRVMQS---QQYSDAIELYSFAIA-LCGNN-AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~---~~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 251 (433)
....+.++.++... .+..+.+.+++..++ -.|.. .++.+.++..++++++|+.++.+.+..++..|+|..+.-.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45667777777654 467889999999996 45543 5788899999999999999999999999999999876543
|
|
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.065 Score=50.27 Aligned_cols=117 Identities=27% Similarity=0.309 Sum_probs=95.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcC-------------------CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 181 FKCQGNRVMQSQQYSDAIELYSFAIALCG-------------------NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 181 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
....|...++.++|..|..-|.+++..-. .-.....+++.+-++.+.+..|+.....+++.
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~ 304 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD 304 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence 33445667777888888887777764311 11345667889999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 013948 242 DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298 (433)
Q Consensus 242 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 298 (433)
++....+++.++..+....++++|++ +++.+....|++......+..+.....++.
T Consensus 305 ~~s~tka~~Rr~~~~~~~~~~~~a~~-~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 305 ERSKTKAHYRRGQAYKLLKNYDEALE-DLKKAKQKAPNDKAIEEELENVRQKKKQYN 360 (372)
T ss_pred ChhhCcHHHHHHhHHHhhhchhhhHH-HHHHhhccCcchHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999 999999999999998888877766665544
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.54 E-value=1.8 Score=40.50 Aligned_cols=118 Identities=22% Similarity=0.176 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ-------QYSDAIELYSFAIALCGNNAVYYSNRAA 220 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~la~ 220 (433)
.|..+|..+|+++....-.. -..+.+.+|.++..-. +...|+..|.++-... ++.+.+.+|.
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~---------a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~ 195 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVE---------AALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGR 195 (292)
T ss_pred cCHHHHHHHHHHHHHcCChh---------HHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHH
Confidence 48899999999998873221 0234777777776541 3347999999988766 8889999998
Q ss_pred HHHH----hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHhhCCCC
Q 013948 221 AYTQ----IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG---------------NYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 221 ~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---------------~~~~A~~~~~~~al~~~p~~ 280 (433)
+|.. ..++.+|+.+|.++.+... ..+.+.++ +++..| +...|.. ++..+....+..
T Consensus 196 ~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~ 270 (292)
T COG0790 196 MYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALE-WLQKACELGFDN 270 (292)
T ss_pred HHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHH-HHHHHHHcCChh
Confidence 8865 3389999999999999877 88999999 777666 7788888 888877665543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.28 Score=47.91 Aligned_cols=123 Identities=12% Similarity=0.129 Sum_probs=96.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.||+-.|-.-...++...|.. +.-....+.+....|+|+.|...+.-+-..-.....+...+-....++|
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~----------p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQD----------PVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCC----------chhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchh
Confidence 478888888888888877766 5556667888889999999988886655444333444444556677899
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
++++|.......+.-.-+.++....-+-....+|-++++.. ++++.+.++|..
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~-~wk~~~~~~~~~ 424 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH-YWKRVLLLNPET 424 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH-HHHHHhccCChh
Confidence 99999999988888877888887777777888899999999 999999988753
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.34 Score=44.17 Aligned_cols=72 Identities=22% Similarity=0.277 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~ 286 (433)
...++=.++...++++.|..+.++.+.++|+++.-+.-.|.+|.++|.+.-|+. .++..++..|+++.+-.-
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~-dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALE-DLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHH-HHHHHHHhCCCchHHHHH
Confidence 344455667777888888888888888888888888888888888888888888 888888888887765443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.099 Score=32.65 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
++.++|.+|..+|++++|+.++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4445555555555555555555555443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.20 E-value=5.7 Score=42.16 Aligned_cols=204 Identities=11% Similarity=0.005 Sum_probs=122.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-----AVYYSNRAAA 221 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~ 221 (433)
..++++|..+..++....+... ........+...-..|.+....|++++|++..+.++..-|.+ ..+...+|.+
T Consensus 428 ~~r~~ea~~li~~l~~~l~~~~-~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 428 QHRLAEAETLIARLEHFLKAPM-HSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred ccChHHHHHHHHHHHHHhCcCc-ccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 3678888888877766554421 111122335666678888999999999999999999987765 5678889999
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCC----c--HHHHHHHHHHHHHcCCHHHHHHH-HHHHH----HhhCCCCHHHHHHHHHH
Q 013948 222 YTQIHQYAEAVRDCLKSIDIDPN----Y--SKAYSRLGLAYYAQGNYNDAIEK-GFKKA----LQLDPNNEAVKENIRMA 290 (433)
Q Consensus 222 ~~~~~~~~~A~~~~~~al~~~p~----~--~~~~~~lg~~~~~~g~~~~A~~~-~~~~a----l~~~p~~~~~~~~l~~~ 290 (433)
..-.|++++|..+...+.++... + ..+.+..+.++..+|+...|... .+... +...|-..-.....+.+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 99999999999999999888432 2 34445568888889943333220 22222 22233333233333333
Q ss_pred HHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHH
Q 013948 291 EQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDS 370 (433)
Q Consensus 291 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~ 370 (433)
+...-+.+.+..... ..+.+...-...+.....+...++ .+....|+.++|....
T Consensus 587 l~~~~r~~~~~~ear------------------------~~~~~~~~~~~~~~~~~~~~~~LA-~l~~~~Gdl~~A~~~l 641 (894)
T COG2909 587 LRAWLRLDLAEAEAR------------------------LGIEVGSVYTPQPLLSRLALSMLA-ELEFLRGDLDKALAQL 641 (894)
T ss_pred HHHHHHHhhhhHHhh------------------------hcchhhhhcccchhHHHHHHHHHH-HHHHhcCCHHHHHHHH
Confidence 322222332222111 001011111112223344445888 9999999999998877
Q ss_pred hhhcCC
Q 013948 371 NVSGSD 376 (433)
Q Consensus 371 ~~al~l 376 (433)
.....+
T Consensus 642 ~~~~~l 647 (894)
T COG2909 642 DELERL 647 (894)
T ss_pred HHHHHH
Confidence 765443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.45 Score=37.16 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=66.9
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhhCCCCHHH
Q 013948 218 RAAAYTQIHQYAEAVRDCLKSIDIDPNYS---KAYSRLGLAYYAQGN-----------YNDAIEKGFKKALQLDPNNEAV 283 (433)
Q Consensus 218 la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~-----------~~~A~~~~~~~al~~~p~~~~~ 283 (433)
+|.-++..|++-+|++..+..+...+++. ..+..-|.++..+.. .-.+++ +|.++..+.|.....
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve-~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVE-CFSRAVELSPDSAHS 80 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHH-HHHHHhccChhHHHH
Confidence 46778999999999999999999988876 556667888876542 346788 999999999999888
Q ss_pred HHHHHHHHHHHHHHHHhccccc
Q 013948 284 KENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 284 ~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
++.+|.-+....-|+++....+
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak 102 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAK 102 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 8888866555555555554433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.61 Score=38.48 Aligned_cols=84 Identities=13% Similarity=-0.003 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
.+.....+-...++++++...+...--+.|+.+..-..-|.++...|+|.+|+. .|+....-.+..+-..-.++.|+..
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~r-vlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAAR-ILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHH-HHHhhhccCCCchHHHHHHHHHHHh
Confidence 344444555568999999999999999999999999999999999999999999 9999988888888888889999998
Q ss_pred HHHHH
Q 013948 294 LREER 298 (433)
Q Consensus 294 ~~~~~ 298 (433)
+|+..
T Consensus 91 l~Dp~ 95 (153)
T TIGR02561 91 KGDAE 95 (153)
T ss_pred cCChH
Confidence 88743
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.74 Score=49.13 Aligned_cols=159 Identities=12% Similarity=0.027 Sum_probs=102.5
Q ss_pred ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013948 191 SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270 (433)
Q Consensus 191 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 270 (433)
.+..+.|.++-.+ -+.+..|..+|.+.++.|...+|++.|-+| +++..|...-.+..+.|.|++-+. ++
T Consensus 1088 i~~ldRA~efAe~-----~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~-yL 1156 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAER-----CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVK-YL 1156 (1666)
T ss_pred hhhHHHHHHHHHh-----hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHH-HH
Confidence 3555555554444 246789999999999999999999998765 778889999999999999999999 87
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHH
Q 013948 271 KKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLM 350 (433)
Q Consensus 271 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~ 350 (433)
.-+-+.- ..+.+-..|-.+|.+.++..+-+.+..-.........+.-....+.|+.|.- -- .+..-|.
T Consensus 1157 ~MaRkk~-~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl------~y-----~~vSN~a 1224 (1666)
T KOG0985|consen 1157 LMARKKV-REPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKL------LY-----SNVSNFA 1224 (1666)
T ss_pred HHHHHhh-cCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHH------HH-----HHhhhHH
Confidence 7776542 2223333444555566665554444332221111112222333343333332 22 4445567
Q ss_pred HHhhcccccCCChhhHHHHHhhh
Q 013948 351 NMASNMPQAQPSQSRQGEDSNVS 373 (433)
Q Consensus 351 ~la~~~~~~~g~~~~A~~~~~~a 373 (433)
.++ ..+..+|++..|...-++|
T Consensus 1225 ~La-~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1225 KLA-STLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHH-HHHHHHHHHHHHHHHhhhc
Confidence 788 7788889999998888887
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.83 E-value=4.7 Score=40.81 Aligned_cols=123 Identities=11% Similarity=0.007 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDID-PNYSKAYSRLGLAY 256 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 256 (433)
...|......-...|+++.....|++++--+......|...+..+...|+.+-|-..+..+.+.. |..+..++.-+..-
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 44566666667788999999999999998888889999999999999999999998888888774 77788888888899
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhc
Q 013948 257 YAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRT 301 (433)
Q Consensus 257 ~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 301 (433)
-..|++..|.. .+++...-.|+...+-..........|+.+.+.
T Consensus 377 e~~~n~~~A~~-~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 377 ESNGNFDDAKV-ILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HhhccHHHHHH-HHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 99999999999 999999877998887777777777777776665
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.087 Score=48.53 Aligned_cols=75 Identities=11% Similarity=0.169 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSN-RAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL 252 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 252 (433)
+..|...+......|-|.+--..|.+++..+|.++++|.. -+.=+...++++.+...+.++++++|++|..|+..
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 6777777777778889999999999999999999999976 45557778899999999999999999999888653
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.17 Score=31.50 Aligned_cols=30 Identities=40% Similarity=0.643 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 246 ~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
..++.++|.+|..+|++++|.. ++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~-~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALE-LLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhH-HHHHHHHH
Confidence 3578899999999999999999 99999875
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=93.54 E-value=1.7 Score=33.09 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=47.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG 209 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 209 (433)
.|++..|++.+.+..+.......... ......+...+|.++...|++++|+..+++++.+-.
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~-~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSS-NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchh-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 48999999999999988766532211 123456788889999999999999999999988743
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.37 E-value=8.8 Score=37.76 Aligned_cols=127 Identities=11% Similarity=0.143 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHH--HHHHHHhc---------CC
Q 013948 176 NLAEIFKCQGNRVMQSQQ-YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVR--DCLKSIDI---------DP 243 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~---------~p 243 (433)
....-+..-|.-+...|. -++|+..++.++...|.|..+-. ....+. ...|.+|+. .+.+.+.+ .|
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n-~v~~fv-Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECEN-IVFLFV-KQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHH-HHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 345556666777777776 88999999999999988875432 222222 223444443 22333332 12
Q ss_pred ---CcHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 244 ---NYSKAYSRL--GLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 244 ---~~~~~~~~l--g~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
.+.+.-.-| |.-++.+|+|.++.. +-.-..++.| .+.++..+|.|.....++.+|-.+...
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~-ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYL-YSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 233444444 444678999999999 8888889999 899999999999999999999888774
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.75 Score=41.99 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
...++=..+...++++.|..+.++.+.++|+++.-+--+|.+|.++|.+.-|++.+...++.-|+.+.+-...+...
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34444456778899999999999999999999999999999999999999999999999999999987766555443
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=92.61 E-value=1 Score=48.81 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=79.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhh-------cHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 184 QGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIH-------QYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 184 lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
..+.+...+.|++|+..|++...-.|.. .++.+..|..+...- .+++|+..|++... .|.-|--|+..|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHH
Confidence 3456677888999999999999888865 578888888876542 46777777776544 477788899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCCHHHH
Q 013948 254 LAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284 (433)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~ 284 (433)
.+|.++|+|++-++ +|.-|++..|+.|..-
T Consensus 560 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 560 LVYQRLGEYNEEIK-SLLLALKRYSQHPEIS 589 (932)
T ss_pred HHHHHhhhHHHHHH-HHHHHHHhcCCCCccH
Confidence 99999999999999 9999999998887643
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.55 E-value=3.6 Score=37.55 Aligned_cols=121 Identities=14% Similarity=0.173 Sum_probs=72.8
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-----CCCH-HHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-----GNNA-VYYSNRAAA 221 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~-~~~~~la~~ 221 (433)
.+.++|+.-|++++++.+..+ ..-..++...-.+.++.++|++-++.|.+.+..- .+.. ...+.+-..
T Consensus 41 ~~p~~Al~sF~kVlelEgEKg------eWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDy 114 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKG------EWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDY 114 (440)
T ss_pred cCHHHHHHHHHHHHhcccccc------hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 478899999999999987753 2235577777888999999999999998876431 1111 111111111
Q ss_pred HHHhhcHHHHHHHHHHHHhc--CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 222 YTQIHQYAEAVRDCLKSIDI--DPNYSKAY----SRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 222 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
-....+.+--..+|+..+.. +..+...| ..||.+++..++|.+-.. .+++.-.
T Consensus 115 iStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~K-IlkqLh~ 173 (440)
T KOG1464|consen 115 ISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQK-ILKQLHQ 173 (440)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHH-HHHHHHH
Confidence 11222233333334333322 12233333 458999999999887776 6665443
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.37 E-value=1.8 Score=41.70 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=102.9
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ--QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.-+++-+.+...+++.+|+. ..+|+.+..++.+.+ ++..=+...+++++.+|.+..+|..+=.+....
T Consensus 89 ~~ld~eL~~~~~~L~~npks----------Y~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~ 158 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKS----------YGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQA 158 (421)
T ss_pred HhhHHHHHHHHHHHHhCchh----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHH
Confidence 35677888999999999987 899999999888765 468889999999999999998888776666554
Q ss_pred hc----HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013948 226 HQ----YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA------QGN------YNDAIEKGFKKALQLDPNNEAVKENI 287 (433)
Q Consensus 226 ~~----~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------~g~------~~~A~~~~~~~al~~~p~~~~~~~~l 287 (433)
.. ..+=+++..++|..++.|..+|.....++.. .|+ ...-++ .-..|+-.+|+|..+|+..
T Consensus 159 ~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle-~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 159 ERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELE-MVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred hcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHH-HHHHHHhcCccccceeeeh
Confidence 43 5677889999999999999999998888763 231 233444 5667777899999988773
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.79 Score=34.91 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 247 KAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 247 ~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
.+.+++|.++...|++++|+. .+++++++
T Consensus 42 ~all~lA~~~~~~G~~~~A~~-~l~eAi~~ 70 (94)
T PF12862_consen 42 YALLNLAELHRRFGHYEEALQ-ALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHHHhCCHHHHHH-HHHHHHHH
Confidence 344455555555555555555 55555544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.13 E-value=2.2 Score=39.48 Aligned_cols=63 Identities=14% Similarity=0.079 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSID 240 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 240 (433)
..++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555555555555555444
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=92.11 E-value=7 Score=37.94 Aligned_cols=132 Identities=13% Similarity=0.045 Sum_probs=97.5
Q ss_pred cchHHHHHHHHHHHHHHHh-----hc---------c--ccc---cchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEME-----KS---------G--AHA---YNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL 207 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p-----~~---------~--~~~---~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 207 (433)
.|+...|.++.++||-... .. + ... ..+.....+.+.....+.+.|-+..|.++.+-.+.+
T Consensus 53 ~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsL 132 (360)
T PF04910_consen 53 QGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSL 132 (360)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 5788888888888874332 11 1 111 224445667777778888999999999999999999
Q ss_pred cCC-CH-HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHcCCH---------------HHH
Q 013948 208 CGN-NA-VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP-----NYSKAYSRLGLAYYAQGNY---------------NDA 265 (433)
Q Consensus 208 ~p~-~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~---------------~~A 265 (433)
+|. |+ .+.+.+-....+.++|+--+..++....... ..|..-+..+.+++..++- +.|
T Consensus 133 dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A 212 (360)
T PF04910_consen 133 DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESA 212 (360)
T ss_pred CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHH
Confidence 999 65 3455556666788888888888877665211 1356778889999999988 899
Q ss_pred HHHHHHHHHhhCCC
Q 013948 266 IEKGFKKALQLDPN 279 (433)
Q Consensus 266 ~~~~~~~al~~~p~ 279 (433)
.. .+++|+...|.
T Consensus 213 ~~-~L~~Ai~~fP~ 225 (360)
T PF04910_consen 213 DE-ALQKAILRFPW 225 (360)
T ss_pred HH-HHHHHHHHhHH
Confidence 99 99999998874
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.07 E-value=13 Score=39.72 Aligned_cols=125 Identities=13% Similarity=0.126 Sum_probs=82.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC--HHHHHHHHHHH----HHhcCCCHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ--YSDAIELYSFA----IALCGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~--~~~A~~~~~~a----l~~~p~~~~~~~~la~ 220 (433)
.|++++|..+.+.+.++....+..+ -..++....+.++..+|+ +.+....|... +...|-+.-....++.
T Consensus 510 ~G~~~~Al~~~~~a~~~a~~~~~~~----l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 510 RGELTQALALMQQAEQMARQHDVYH----LALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred hchHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 5999999999999998866543221 225666777888888994 34444444332 2223444344444555
Q ss_pred HHHHhhcHHHHHHHHHHHHhcC----CC--cHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 221 AYTQIHQYAEAVRDCLKSIDID----PN--YSK-AYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~----p~--~~~-~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
++...-+++.+.....+.++.. |. .+. +++.|+.+.+..|++++|.. .+.....+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~-~l~~~~~l 647 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALA-QLDELERL 647 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHH
Confidence 5555555888888877777763 22 222 33489999999999999999 88877654
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.6 Score=28.48 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHH--HHHHHhhCCCC
Q 013948 246 SKAYSRLGLAYYAQGNYNDAIEKG--FKKALQLDPNN 280 (433)
Q Consensus 246 ~~~~~~lg~~~~~~g~~~~A~~~~--~~~al~~~p~~ 280 (433)
++.++.+|..+...|++++|+. . |.-+..+++.|
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~-~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIH-FFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHH-HHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHhcccC
Confidence 3578899999999999999999 9 44777777754
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=91.90 E-value=2.4 Score=30.89 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHH---HHHHHHhhcHHHHHHHHHHHHhc
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR---AAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~~~~~~A~~~~~~al~~ 241 (433)
+......|.-++...+.++|+..++++++..++....+..+ ..+|...|+|.+.+.+...=+.+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667777788888888888887777665544443 45566777777777665544443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.86 E-value=9.9 Score=37.37 Aligned_cols=193 Identities=8% Similarity=-0.111 Sum_probs=94.5
Q ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHH
Q 013948 157 FHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCL 236 (433)
Q Consensus 157 ~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 236 (433)
++++++..+-. ++.|+.....+...++-+.|+....+++...|. +.+.++.+|...++-+....+|+
T Consensus 291 ~~q~~~y~~~~----------~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fd 357 (660)
T COG5107 291 HNQILDYFYYA----------EEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFD 357 (660)
T ss_pred HHHHHHHhhhh----------HHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHH
Confidence 56666665555 666666666666666777777666666655554 56666666666666665555666
Q ss_pred HHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCc--
Q 013948 237 KSIDIDPNYSKAYSRLGLAYYA---QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSH-- 311 (433)
Q Consensus 237 ~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 311 (433)
+++..= .--+.++..-.. -|+++...+ .+-+-. ....-+|+-+-..-.+..-.+.|...+-++...+
T Consensus 358 k~~q~L----~r~ys~~~s~~~s~~D~N~e~~~E-ll~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~ 429 (660)
T COG5107 358 KCTQDL----KRKYSMGESESASKVDNNFEYSKE-LLLKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV 429 (660)
T ss_pred HHHHHH----HHHHhhhhhhhhccccCCccccHH-HHHHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC
Confidence 554320 000001110000 122211111 111100 0111222222111122222233333333333222
Q ss_pred --cchhh---hhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 312 --YSQES---NQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 312 --~~~~~---~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
.-... --|...|++.-|...| .+...| +.+......- ..+...++-+.|...|+++++.
T Consensus 430 ~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~-----d~~~y~~kyl-~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 430 GHHVYIYCAFIEYYATGDRATAYNIFELGLLKFP-----DSTLYKEKYL-LFLIRINDEENARALFETSVER 495 (660)
T ss_pred CcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCC-----CchHHHHHHH-HHHHHhCcHHHHHHHHHHhHHH
Confidence 10011 1134447777777777 777777 6666555555 6677778888888888866543
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=91.72 E-value=2.2 Score=46.37 Aligned_cols=129 Identities=15% Similarity=0.170 Sum_probs=94.4
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc----c---CHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS----Q---QYSDAIELYSFAIALCGNNAVYYSNRAA 220 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~----~---~~~~A~~~~~~al~~~p~~~~~~~~la~ 220 (433)
+.|++|+..|++.-..+|.- ..-.++.+..|..+..+ | .+++|+..|++.. -.|.-+-=|...|.
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGR-------KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCc-------ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 67888888888888877754 33467888888776532 2 5788888887744 35666778999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhhCCCCHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG-----NYNDAIEKGFKKALQLDPNNEAVKE 285 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~~al~~~p~~~~~~~ 285 (433)
+|..+|+|++-+++|..|++..|.+|..-...-.+.+++. +...|.. ..--++.+.|.......
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 629 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALV-FMLLALWIAPEKISSRE 629 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCcccccchH
Confidence 9999999999999999999999998876655555544432 3345666 56667777887654443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.70 E-value=9.6 Score=34.88 Aligned_cols=124 Identities=11% Similarity=0.178 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------------HHHHH
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------------AVYYS 216 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~ 216 (433)
+.+--..+|+..++...... ...-+......+|.+++..++|.+-.+.+.+.-..+..+ ..+|-
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAK----NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAK----NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhh----cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 34444455555555432210 011223344568999999998888777776665443221 23444
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHH--HH----HHHHHHHcCCHHHHHHHHHHHHHhhC
Q 013948 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAY--SR----LGLAYYAQGNYNDAIEKGFKKALQLD 277 (433)
Q Consensus 217 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~----lg~~~~~~g~~~~A~~~~~~~al~~~ 277 (433)
.--..|..+++..+-...|++++.+...-|... -. =|..+.+.|+|++|-. .|=.|++..
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT-DFFEAFKNY 261 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT-DFFEAFKNY 261 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh-HHHHHHhcc
Confidence 445677888888888889999998854432222 11 2556788899999999 777777653
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.51 E-value=1.9 Score=47.47 Aligned_cols=131 Identities=12% Similarity=0.160 Sum_probs=105.3
Q ss_pred hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc----
Q 013948 174 QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL--------CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI---- 241 (433)
Q Consensus 174 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---- 241 (433)
++..+..+..++.++...+++++|+..-.++.-+ .|+....+.+++...+..++...|+..+.++..+
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 3445889999999999999999999998888654 3455678899999999999999999999998876
Q ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 242 ----DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN--------NEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 242 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
.|.-.....+++.++...++++.|+. +++.|++.+-. ....+..+++....++++..+.....
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~-~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALR-YLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHH-HHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHh
Confidence 35556677889999999999999999 99999986422 34456667777777888777666654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.51 E-value=13 Score=37.80 Aligned_cols=111 Identities=13% Similarity=-0.013 Sum_probs=92.2
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-GNNAVYYSNRAAAYTQ 224 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 224 (433)
..|+++...-.|++++--...- ...|...+.-....|+.+-|-..+.++.++. |..+.++..-+..--.
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y----------~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~ 378 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALY----------DEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES 378 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhh----------HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh
Confidence 4589999999999988754443 6788888888888899999998888888774 5667788888888888
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAI 266 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 266 (433)
.|+++.|...++++.+--|....+-........+.|+.+.+.
T Consensus 379 ~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 899999999999999888988888888888888888888877
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.42 E-value=4.1 Score=35.10 Aligned_cols=96 Identities=13% Similarity=0.051 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--CCCHHHHH-
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN---YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD--PNNEAVKE- 285 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~--p~~~~~~~- 285 (433)
..++..+|..|.+.|+.++|++.|.++...-.. ....++.+-.+....++|..... ++.++-.+- +.++....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~-~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEK-YIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHhccchHHHHHH
Confidence 467889999999999999999999998776433 24677888888999999999999 888887653 33443332
Q ss_pred ---HHHHHHHHHHHHHHhcccccccC
Q 013948 286 ---NIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 286 ---~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
.-|..+...+++..|...+....
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccC
Confidence 22444556677777777665444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.32 E-value=6 Score=40.88 Aligned_cols=111 Identities=13% Similarity=0.183 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 174 QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 174 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
+.....++..+|..+.....|++|.++|.+.-.. -++..|++.+.+|++-.. ....-|++...+-.+|
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a 859 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGELEV----LARTLPEDSELLPVMA 859 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHH
Confidence 3445678888888888888888888888765322 245667777777766433 3333488888888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 254 LAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
.++...|.-++|.+ +|-+. ..+.+ -......+.+|.+|.+..+
T Consensus 860 ~mf~svGMC~qAV~-a~Lr~-----s~pka---Av~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 860 DMFTSVGMCDQAVE-AYLRR-----SLPKA---AVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHhhchHHHHHH-HHHhc-----cCcHH---HHHHHHHHHHHHHHHHHHH
Confidence 99999999899888 66442 11211 1123455667776666555
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.4 Score=29.62 Aligned_cols=28 Identities=21% Similarity=0.506 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIAL 207 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 207 (433)
++..+|.+....++|++|+.-|.+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=91.09 E-value=7.4 Score=33.44 Aligned_cols=104 Identities=14% Similarity=0.078 Sum_probs=68.9
Q ss_pred cchHHHHH-HHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 013948 147 PSQVDKAS-RIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM-----QSQQYSDAIELYSFAIALCGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~-~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 220 (433)
+|+|-+++ +.|++|..+...+.... ..+...+.+|..++ ..++...|++.|..+.. .+++.+..++|.
T Consensus 40 LgdYlEgi~knF~~A~kv~K~nCden----~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gL 113 (248)
T KOG4014|consen 40 LGDYLEGIQKNFQAAVKVFKKNCDEN----SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGL 113 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc----CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhh
Confidence 35555555 34666666555553221 22566777776655 35689999999999886 457888888888
Q ss_pred HHHHhh-------cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 221 AYTQIH-------QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 221 ~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
+++.-. +..+|.+++.++..++ +..+.+.|...|..
T Consensus 114 l~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~ 156 (248)
T KOG4014|consen 114 LHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMG 156 (248)
T ss_pred hhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhc
Confidence 886532 3688999999998874 44566666665553
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.46 Score=29.37 Aligned_cols=29 Identities=34% Similarity=0.609 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 247 KAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 247 ~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
.++..||.+-...++|++|+. .|+++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~-D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIE-DYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHH-HHHHHHHH
Confidence 356677777777777777777 77777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=90.69 E-value=1 Score=41.81 Aligned_cols=62 Identities=21% Similarity=0.174 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 197 AIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 197 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
|+.+|.+|+.+.|++...|+.+|.+....|+.-.|+-+|-+++......+.+..+|...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555554443344555555555444
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.41 E-value=12 Score=36.31 Aligned_cols=133 Identities=16% Similarity=0.133 Sum_probs=92.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCC-CHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL-----CGN-NAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~~~la~ 220 (433)
.+++.+|.++-...+.......... -+--.+..|+.+..++...|+...-...+...+.. +.. .+.+.+.+=.
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRt-lD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRT-LDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhh-HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 5788888887777665432211000 01112667888888888888876665555544432 211 2556677778
Q ss_pred HHHHhhcHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDI----DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
+|...+.|+.|-....+..-- +...+...+.+|.+..-+++|..|.+ ++-+|+...|.+.
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~-~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALE-YFLQALRKAPQHA 281 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHH-HHHHHHHhCcchh
Confidence 899999999998887776521 11345677889999999999999999 9999999999753
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.27 E-value=9.9 Score=33.30 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHHHHHHHhc
Q 013948 245 YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN----NEAVKENIRMAEQKLREERQRT 301 (433)
Q Consensus 245 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~a~ 301 (433)
.+...+.+|..|. ..+.++++. .+.++|++.+. ++++...|+.++..+++++.|-
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~-ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQ-LLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHH-HHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4455555554444 455556666 66666655432 3555666666666666555543
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.26 E-value=1.3 Score=48.60 Aligned_cols=174 Identities=20% Similarity=0.189 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHH------HHH-HHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC--------
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIE------LYS-FAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDID-------- 242 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~------~~~-~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------- 242 (433)
+.-....|......+.+.+|.+ .+. ..-.+.|.....+..++.++.+++++++|+....++.-+.
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 4556667777778888888877 444 2234477888999999999999999999999998887653
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccch
Q 013948 243 PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL--------DPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQ 314 (433)
Q Consensus 243 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 314 (433)
|+....+.+++...+..++...|.. .+.+++.+ .|.-.....++..++..+++++.|..+.+.+.......
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~-~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALK-SLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhh-hHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 5567888999999999999999999 88888765 35555666788888888899999888877544211100
Q ss_pred hhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 315 ESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 315 ~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
.....- .....+..++ +++.-++++..|....+....+
T Consensus 1091 ------------------~g~~~l-----~~~~~~~~~a-~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1091 ------------------LGPKEL-----ETALSYHALA-RLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred ------------------cCccch-----hhhhHHHHHH-HHHhhhHHHHHHHHHHhhHHHH
Confidence 111222 5566777778 8888888888887777665543
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.2 Score=41.34 Aligned_cols=62 Identities=24% Similarity=0.283 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 231 AVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 231 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
|..+|.+|+.+.|.+...|..+|.++...|+.-.|+- +|-+++-.....+.+..+|.....+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy-~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVY-YYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHH-HHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHH-HHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999 9999997766668889999888877
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.83 E-value=13 Score=37.72 Aligned_cols=121 Identities=14% Similarity=0.070 Sum_probs=89.1
Q ss_pred cchHHHHHHHHHHHHHHHhhcc--ccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cC----------
Q 013948 147 PSQVDKASRIFHDAINEMEKSG--AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL-----CG---------- 209 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p---------- 209 (433)
...|++|...|.-+....+.+. ......|.....+..++.++..+|+.+-|.+...++|-. .|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3678899998888887665543 234566888999999999999999999999998888742 22
Q ss_pred ------CCH---HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC-cHHHHHHHHHHH-HHcCCHHHHHH
Q 013948 210 ------NNA---VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN-YSKAYSRLGLAY-YAQGNYNDAIE 267 (433)
Q Consensus 210 ------~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~-~~~g~~~~A~~ 267 (433)
.+- -+++..-.-+.+.|.+..|+++++-.++++|. +|.+...+-.+| .+..+|+==+.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~ 399 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIE 399 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHH
Confidence 221 23333445566789999999999999999999 887777766665 34555554444
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.42 Score=26.65 Aligned_cols=18 Identities=33% Similarity=0.331 Sum_probs=7.1
Q ss_pred HHHHHHHHHcCCHHHHHH
Q 013948 250 SRLGLAYYAQGNYNDAIE 267 (433)
Q Consensus 250 ~~lg~~~~~~g~~~~A~~ 267 (433)
+.+|.++..+|++++|..
T Consensus 5 ~~la~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 5 LALARALLAQGDPDEAER 22 (26)
T ss_pred HHHHHHHHHcCCHHHHHH
Confidence 333334444444444333
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=89.70 E-value=3.5 Score=39.96 Aligned_cols=94 Identities=16% Similarity=0.089 Sum_probs=70.6
Q ss_pred cchHHHHHHHHHHHHHHHhhcccccc------ch--hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAY------NQ--KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~------~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 218 (433)
.++|..|..-|+.+|.+..+-..... .+ .-....--.+..||...++.+.|+.+..+.|.++|....-+...
T Consensus 189 qk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrq 268 (569)
T PF15015_consen 189 QKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQ 268 (569)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHH
Confidence 46777777777777776544321110 01 11123344588899999999999999999999999999999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHh
Q 013948 219 AAAYTQIHQYAEAVRDCLKSID 240 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~ 240 (433)
|.|+..+.+|.+|-..+.-+.-
T Consensus 269 AavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 269 AAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887766543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.66 E-value=8.1 Score=32.97 Aligned_cols=115 Identities=16% Similarity=0.096 Sum_probs=54.6
Q ss_pred HccCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHH
Q 013948 190 QSQQYSDAIELYSFAIALCGNN--AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY----SKAYSRLGLAYYAQGNYN 263 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~ 263 (433)
..+..++|+..|...-+-.-.. .-+.+..|.+..+.|+-..|+..|..+-.-.|-- --+.+.-+.++...|-|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3445555555555433322222 2344455555556666666666665554443221 123344455555555555
Q ss_pred HHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 264 DAIEKGFKKA-LQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 264 ~A~~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
+-.. -.+.. -.-+|--..+...||...++.|++..|..++.
T Consensus 150 dV~s-rvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~ 191 (221)
T COG4649 150 DVSS-RVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFV 191 (221)
T ss_pred HHHH-HhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHH
Confidence 5444 22221 12233344555555555555566555555544
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.64 E-value=0.47 Score=26.42 Aligned_cols=24 Identities=21% Similarity=-0.172 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHH
Q 013948 213 VYYSNRAAAYTQIHQYAEAVRDCL 236 (433)
Q Consensus 213 ~~~~~la~~~~~~~~~~~A~~~~~ 236 (433)
.+.+.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998875
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.37 E-value=2 Score=42.23 Aligned_cols=119 Identities=11% Similarity=0.041 Sum_probs=93.3
Q ss_pred HHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 013948 188 VMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267 (433)
Q Consensus 188 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 267 (433)
....|+.-.|-.....++...|.++......+.+...+|.|+.+...+.-+-..-..-..+..-+-..++.+|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 35678999999999999999999999999999999999999999998876655544444555556667788999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 268 KGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
...-.+.-.-.++++..--+..-..+|-.+++..+.+..
T Consensus 379 -~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~ 417 (831)
T PRK15180 379 -TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRV 417 (831)
T ss_pred -HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHH
Confidence 888877766677777666666666677777776654444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.48 E-value=5.4 Score=36.97 Aligned_cols=80 Identities=19% Similarity=0.200 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013948 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKA 273 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~a 273 (433)
|..=+...+++++. ....++..++..+...|+++.++..++..+.++|-+...|..+-..|...|+...|+. .|++.
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~-~y~~l 213 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIR-AYRQL 213 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHH-HHHHH
Confidence 44444444444442 2567888999999999999999999999999999999999999999999999999999 88887
Q ss_pred Hhh
Q 013948 274 LQL 276 (433)
Q Consensus 274 l~~ 276 (433)
-+.
T Consensus 214 ~~~ 216 (280)
T COG3629 214 KKT 216 (280)
T ss_pred HHH
Confidence 653
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=88.41 E-value=4.1 Score=29.71 Aligned_cols=53 Identities=11% Similarity=0.158 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHH---HHHHHHcCCHHHHHH
Q 013948 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL---GLAYYAQGNYNDAIE 267 (433)
Q Consensus 215 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---g~~~~~~g~~~~A~~ 267 (433)
....|.=++..++..+|+..+.++++..++.+..+..+ ..+|...|+|.+.+.
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677888888888888888877766555544 455677888888777
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=87.54 E-value=40 Score=35.35 Aligned_cols=127 Identities=18% Similarity=0.152 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCC--C----HHHHHHHHHHH
Q 013948 150 VDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM-QSQQYSDAIELYSFAIALCGN--N----AVYYSNRAAAY 222 (433)
Q Consensus 150 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~ 222 (433)
...|+.+++-+++..+ ..+...+.+.+.+|.+++ ...+++.|..++.+++.+... . ..+.+.++.++
T Consensus 37 I~~ai~CL~~~~~~~~------l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~ 110 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFK------LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIY 110 (608)
T ss_pred HHHHHHHHHHHhccCC------CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 4456666666665211 123445888999999987 779999999999999888743 2 23456678888
Q ss_pred HHhhcHHHHHHHHHHHHhcCCC----cHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhhC--CCCHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPN----YSKAYSRLG--LAYYAQGNYNDAIEKGFKKALQLD--PNNEAVK 284 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg--~~~~~~g~~~~A~~~~~~~al~~~--p~~~~~~ 284 (433)
.+.+... |+..++++++.... .....+.+- ..+...+++..|++ .++...... +.++.+.
T Consensus 111 ~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~-~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 111 FKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALE-NLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHhhhcCCHHHH
Confidence 8888777 99999999988655 222233332 22223379999999 999888765 4555543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=87.51 E-value=9 Score=34.99 Aligned_cols=87 Identities=9% Similarity=0.106 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHH
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAAAY 222 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~ 222 (433)
.-...++++.+|+..+..... ..........+|..|+..|+|++|+.+|+.+....... ..+...+..|+
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~----~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca 228 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQ----NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECA 228 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 444566777777776655421 12234455667777888888888888887775543322 34556666777
Q ss_pred HHhhcHHHHHHHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSI 239 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al 239 (433)
..+|+.+..+...-+.+
T Consensus 229 ~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 229 KRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 77777777666554443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=86.96 E-value=3.6 Score=42.99 Aligned_cols=116 Identities=27% Similarity=0.417 Sum_probs=94.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHh--hcHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFAIALCGNN----AVYYSNRAAAYTQI--HQYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 255 (433)
..-|+.++..+++..|.--|..++.+-|.+ .....+.+.|+..+ ++|..++....-++...|....+++..+.+
T Consensus 57 ~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~ 136 (748)
T KOG4151|consen 57 KEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARK 136 (748)
T ss_pred HhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhH
Confidence 344678888899999988888888887743 56677788777765 599999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 013948 256 YYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298 (433)
Q Consensus 256 ~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 298 (433)
|...+.++-|++ .+.-.....|.+..+..-....+..+...+
T Consensus 137 y~al~k~d~a~r-dl~i~~~~~p~~~~~~eif~elk~ll~~~d 178 (748)
T KOG4151|consen 137 YEALNKLDLAVR-DLRIVEKMDPSNVSASEIFEELKGLLELKD 178 (748)
T ss_pred HHHHHHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHHHHhhcC
Confidence 999999999999 888888889999776665555554443333
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.94 E-value=16 Score=34.42 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=75.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC---------------------
Q 013948 185 GNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP--------------------- 243 (433)
Q Consensus 185 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------------------- 243 (433)
-+...+..+..+-|..-..|++++|.++.++..++.-- ..-..+|...++++++...
T Consensus 191 MQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~r 268 (556)
T KOG3807|consen 191 MQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLR 268 (556)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhh
Confidence 34445566777788888889999999999988876432 2345666666666665411
Q ss_pred --Cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHH
Q 013948 244 --NY--SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN--EAVKENIRMAEQKLREERQ 299 (433)
Q Consensus 244 --~~--~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~ 299 (433)
.+ ..+..+++.|..++|+..+|++ .++...+-.|-. ..+..+|-.++..+..+.+
T Consensus 269 RDtnvl~YIKRRLAMCARklGrlrEA~K-~~RDL~ke~pl~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 269 RDTNVLVYIKRRLAMCARKLGRLREAVK-IMRDLMKEFPLLTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred cccchhhHHHHHHHHHHHHhhhHHHHHH-HHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 2345568999999999999999 998887766632 2334455555555555444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=86.27 E-value=24 Score=34.90 Aligned_cols=122 Identities=11% Similarity=0.081 Sum_probs=86.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhH-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNL-AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.+++.+|.++|.+..+.....+ ... .+.+-.+-...+-.++.+.-...+...-+..|.++......|...++.
T Consensus 19 q~~~~esEkifskI~~e~~~~~------f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEKESSP------FLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ 92 (549)
T ss_pred HhhhhHHHHHHHHHHHHhhcch------HHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 6899999999999888654431 111 123333333345567777777777777777899999999999999999
Q ss_pred hcHHHHHHHHHHHHhc----CCC---------cHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 226 HQYAEAVRDCLKSIDI----DPN---------YSK--AYSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~----~p~---------~~~--~~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
+.|.+|++.+..--.. .|. .+. .-...+.++...|+|.++.. .+++.+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~-iLn~i~~ 156 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRA-ILNRIIE 156 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHH-HHHHHHH
Confidence 9999999988654433 111 111 22236888999999999999 8888764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=85.43 E-value=2.6 Score=24.08 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=20.1
Q ss_pred cCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 013948 192 QQYSDAIELYSFAIALCGNNAVYYSNRAA 220 (433)
Q Consensus 192 ~~~~~A~~~~~~al~~~p~~~~~~~~la~ 220 (433)
|+++.|...|++++...|.+..+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45667777777777777777777766543
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.29 E-value=1.3 Score=41.85 Aligned_cols=118 Identities=15% Similarity=0.091 Sum_probs=89.6
Q ss_pred CcchHHHHHHHHHHHHHHHh---hccc--c----ccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEME---KSGA--H----AYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYS 216 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p---~~~~--~----~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 216 (433)
..++++.|..-+.+++.... .... . .............++.+-...+.+..|+..-..+++.++....+++
T Consensus 234 kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~ 313 (372)
T KOG0546|consen 234 KKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHY 313 (372)
T ss_pred hhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHH
Confidence 46788888888888876543 1110 0 1112223345556788888999999999998888888888999999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 013948 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYN 263 (433)
Q Consensus 217 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 263 (433)
.++..+..+.++++|++.+..+....|++....-.+..+-....++.
T Consensus 314 Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 314 RRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYN 360 (372)
T ss_pred HHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999887766666655544443
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.12 E-value=23 Score=35.68 Aligned_cols=207 Identities=13% Similarity=0.017 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcH
Q 013948 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN--NAVYYSNRAAAYTQIHQY 228 (433)
Q Consensus 151 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~ 228 (433)
+...+.+.......|++ +--....+..+...|+.+.|+..++..+...-. ....++.+|+++..+.+|
T Consensus 250 ~~~~~~Ll~~~~~~p~g----------a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~ 319 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKG----------ALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQY 319 (546)
T ss_pred HHHHHHhHHHHHhCCCC----------ccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555655 455566677777777788889888888761111 245788899999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHH-HHHHH--------cCCHHHHHHHHHHHH---HhhCCCCHHHHHHHHHHHHHHHH
Q 013948 229 AEAVRDCLKSIDIDPNYSKAYSRLG-LAYYA--------QGNYNDAIEKGFKKA---LQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 229 ~~A~~~~~~al~~~p~~~~~~~~lg-~~~~~--------~g~~~~A~~~~~~~a---l~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
..|...+......+.=..-.|..++ -|+.+ .|+-+.|.. .++.. +...|.+.++-..+. .+-++
T Consensus 320 ~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~-~~k~~~~l~~~a~K~~P~E~f~~---RKver 395 (546)
T KOG3783|consen 320 SRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQL-YFKVGEELLANAGKNLPLEKFIV---RKVER 395 (546)
T ss_pred HHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHH-HHHHHHHHHHhccccCchhHHHH---HHHHH
Confidence 9999999988887643333333343 44432 234444444 33332 333444333222211 22233
Q ss_pred HHHhcccccccCCCcc-chhhhhhhcC----CCCCCCCCcc-cccCCCCC-CCccHHHHHHHHhhcccccCCChhhHHHH
Q 013948 297 ERQRTGWDQTTSSSHY-SQESNQSTGG----FRSHGTPPSF-TMPFNTNA-LPTDIASMLMNMASNMPQAQPSQSRQGED 369 (433)
Q Consensus 297 ~~~a~~~~~~~~~~~~-~~~~~~~~~~----~~~~~A~~~~-al~~~p~~-~~~~~~~a~~~la~~~~~~~g~~~~A~~~ 369 (433)
+..-.. .++..... ......|... ...++.. .+ +--.+|.- ++.+..--++-+| .++..+|+...|..+
T Consensus 396 f~~~~~--~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g-~~lR~Lg~~~~a~~~ 471 (546)
T KOG3783|consen 396 FVKRGP--LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKG-VILRNLGDSEVAPKC 471 (546)
T ss_pred Hhcccc--ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHH-HHHHHcCCHHHHHHH
Confidence 332221 01111111 0111122222 1111111 11 22223322 2224444566677 899999999999999
Q ss_pred HhhhcC
Q 013948 370 SNVSGS 375 (433)
Q Consensus 370 ~~~al~ 375 (433)
|+..++
T Consensus 472 f~i~~~ 477 (546)
T KOG3783|consen 472 FKIQVE 477 (546)
T ss_pred HHHHHH
Confidence 999883
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.21 E-value=30 Score=30.82 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=52.7
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
-+.+.++..+|+...+.-++.+|.+......+-..+.-.|+|++|.. .++-+-.+.|++.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~-Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALA-QLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHH-HHHHHhhcCcccc
Confidence 45677888999999999999999999888888899999999999999 8999999998764
|
|
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=84.03 E-value=25 Score=30.36 Aligned_cols=65 Identities=15% Similarity=0.043 Sum_probs=47.2
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc-----c--CHHHHHHHHHHHHHhcCCCHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS-----Q--QYSDAIELYSFAIALCGNNAVYYSNR 218 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~l 218 (433)
+.+++..|+..|..+...+. +.+...+|.++... + +..+|.++++++.+++ +..+.++|
T Consensus 85 ~~~~l~~a~r~~~~aC~~n~------------~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~L 150 (248)
T KOG4014|consen 85 DDASLSKAIRPMKIACDANI------------PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLL 150 (248)
T ss_pred CccCHHHHHHHHHHHhccCC------------HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHH
Confidence 45788999999998887432 56777777776532 2 3789999999998765 66666667
Q ss_pred HHHHHH
Q 013948 219 AAAYTQ 224 (433)
Q Consensus 219 a~~~~~ 224 (433)
...++.
T Consensus 151 S~m~~~ 156 (248)
T KOG4014|consen 151 STMYMG 156 (248)
T ss_pred HHHHhc
Confidence 666654
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.87 E-value=28 Score=33.82 Aligned_cols=97 Identities=18% Similarity=0.153 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-------C-Cc
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID-------P-NY 245 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p-~~ 245 (433)
.-.++..+|..|..-|+++.|++.|.++-..+.+. ...|.++-.+-..+|+|.....+-.+|.+.- + -.
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 35678899999999999999999999977766543 4567788888888999999888888887761 0 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013948 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 246 ~~~~~~lg~~~~~~g~~~~A~~~~~~~al 274 (433)
+.+...-|.+...+++|..|.. +|-.+.
T Consensus 229 ~kl~C~agLa~L~lkkyk~aa~-~fL~~~ 256 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLKKYKSAAK-YFLLAE 256 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 3455556777778889999998 776553
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.63 E-value=59 Score=33.01 Aligned_cols=151 Identities=13% Similarity=0.110 Sum_probs=104.3
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS---QQYSDAIELYSFAIALCGNNA-VYYSNRAAAYT 223 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~ 223 (433)
.--+++..++++++...-.. ....++.++..-... ..++.-...+++++.+.-.++ -+|+++-..-.
T Consensus 307 ~~t~e~~~~yEr~I~~l~~~---------~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~ir 377 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLKE---------NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIR 377 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHH
Confidence 34678888888888764332 133444444433222 247778888888887754443 34555545555
Q ss_pred HhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA-YYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTG 302 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 302 (433)
+..-.+.|...|.+|-+..-.-..++..-|.+ |+..++..-|.. .|+-.++..++.+........-+..+++-..+..
T Consensus 378 R~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~Afr-IFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~ 456 (656)
T KOG1914|consen 378 RAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFR-IFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARA 456 (656)
T ss_pred HhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHH-HHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHH
Confidence 66667888888888877654445666666665 667899999999 9999999999999888887777788888777666
Q ss_pred cccccC
Q 013948 303 WDQTTS 308 (433)
Q Consensus 303 ~~~~~~ 308 (433)
.++.+.
T Consensus 457 LFEr~l 462 (656)
T KOG1914|consen 457 LFERVL 462 (656)
T ss_pred HHHHHH
Confidence 655443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.14 E-value=18 Score=42.91 Aligned_cols=116 Identities=15% Similarity=0.071 Sum_probs=88.3
Q ss_pred hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-CC--------
Q 013948 174 QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDID-PN-------- 244 (433)
Q Consensus 174 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~-------- 244 (433)
+....+.|...|++....|+++.|...+-.|.+.. -+.++..+|..++..|+-..|+..+++.++.+ |+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 34568899999999999999999999999988766 67889999999999999999999999999764 22
Q ss_pred --c------HHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013948 245 --Y------SKAYSRLGLAYYAQGNYN--DAIEKGFKKALQLDPNNEAVKENIRMAEQ 292 (433)
Q Consensus 245 --~------~~~~~~lg~~~~~~g~~~--~A~~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (433)
. ..+.+.++.-....++++ +-+. +|+.+.++.|....-++.+|.-+.
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk-~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILK-YYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHcccccCceeeHHHHHH
Confidence 1 123444444444555533 3344 899999999987777777774443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.07 E-value=32 Score=29.52 Aligned_cols=134 Identities=16% Similarity=0.066 Sum_probs=91.8
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----AVYYSNRAAAYT 223 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~ 223 (433)
+..++|+..|...-+-.-. ..-.-+.+..|-+...+|+-..|+..|..+-...|-- -.+...-+.++.
T Consensus 72 ~k~d~Alaaf~~lektg~g--------~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYG--------SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred CCchHHHHHHHHHHhcCCC--------cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh
Confidence 5667777776665442111 1114467777888999999999999999876654321 234556678888
Q ss_pred HhhcHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 224 QIHQYAEAVRDCLKSI-DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
..|.|++.....+..- ..+|--..+.-.||..-++.|++..|.. +|.+... +...+....+.+.+.
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~-~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKS-WFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHH-HHHHHHc-cccCcHHHHHHHHHH
Confidence 9999998766655432 2345556777789999999999999999 9999776 444444444444443
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.85 E-value=27 Score=35.50 Aligned_cols=104 Identities=16% Similarity=0.097 Sum_probs=75.2
Q ss_pred HccCHHHHHHHHHHHHHh------------cCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc----------------
Q 013948 190 QSQQYSDAIELYSFAIAL------------CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI---------------- 241 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------- 241 (433)
....|++|...|.-+... +|.+...+..++.+...+|+.+-|.....++|=.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345688999988888765 3556788999999999999998888877776532
Q ss_pred -----CCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHH
Q 013948 242 -----DPNYSK---AYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN-NEAVKENIRMAEQKL 294 (433)
Q Consensus 242 -----~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 294 (433)
.|.|-. +.+..-..+.+.|-+.-|.+ +.+-.++++|. +|-+...+-.+|...
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E-~cKlllsLdp~eDPl~~l~~ID~~ALr 390 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALE-WCKLLLSLDPSEDPLGILYLIDIYALR 390 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHH-HHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence 233322 23333444567799999999 99999999998 877666665555433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.79 E-value=23 Score=36.87 Aligned_cols=94 Identities=12% Similarity=0.115 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-----C---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-------
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN-----N---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID------- 242 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------- 242 (433)
+..|..++.....+-.++-|...|-+.-....- - ..--..+|.+-.--|+|++|.+.|-.+=+.+
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAielr~ 771 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAIELRK 771 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhHHHHH
Confidence 678888888877777777777766554211100 0 0001233444444566666666653321110
Q ss_pred ------------------C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013948 243 ------------------P---NYSKAYSRLGLAYYAQGNYNDAIEKGFKK 272 (433)
Q Consensus 243 ------------------p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 272 (433)
. ....++.++|..+..+..|++|.+ +|.+
T Consensus 772 klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~-yY~~ 821 (1189)
T KOG2041|consen 772 KLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK-YYSY 821 (1189)
T ss_pred hhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Confidence 1 123456666666666666666666 6554
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=81.75 E-value=58 Score=32.32 Aligned_cols=158 Identities=12% Similarity=0.011 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhhc--------------HHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAAAYTQIHQ--------------YAEAVRDCLK 237 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------~~~A~~~~~~ 237 (433)
......+|+.++..++|+-|...|+.+.+-..+| +.+.-..|.++...+. ++.|...|.+
T Consensus 208 E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 208 EAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 4456779999999999999999999887754433 1223333444444442 2344444444
Q ss_pred HH----hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CCC-----CHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 238 SI----DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL--DPN-----NEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 238 al----~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~--~p~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
+- ....--..+.+..+.++...+.+.+|.. .+-+.... ..+ ..-++..++.|+ .
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~-~~~~~~~~~l~~~l~~~~~alllE~~a~~~-------------~- 352 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAAD-QLIRWTSEILESDLRPFGSALLLEQAAYCY-------------A- 352 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHH-HHHHHHHHHHhhhhhhHhhHHHHHHHHHhh-------------c-
Confidence 21 1112234566667788888888888777 66555543 211 222333334333 0
Q ss_pred cCCCccchhhhhhhcCCCCCCCCCcccccCC---CCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 307 TSSSHYSQESNQSTGGFRSHGTPPSFTMPFN---TNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~---p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
.+..+ |...-..-...|+-||+.-|...|+...|..+|.+|+..
T Consensus 353 --------------------------~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 353 --------------------------SLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred --------------------------ccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 01110 100001345567778878899999999999999998754
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.08 E-value=10 Score=38.98 Aligned_cols=179 Identities=11% Similarity=-0.020 Sum_probs=91.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHH------HHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHh--cCCCcHHHHHHHH
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFA------IALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSID--IDPNYSKAYSRLG 253 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~a------l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg 253 (433)
..++.++.-.|+|.+|.+.|.+. +++..+ .-.+.++.=++..|..++-....++--+ .+-+.|. .-|
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAA 710 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAA 710 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHH
Confidence 45677777788888888888652 332211 1234445555555555444433333211 1112222 246
Q ss_pred HHHHHcCCHHHHHH-----HHHH----HHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCC
Q 013948 254 LAYYAQGNYNDAIE-----KGFK----KALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFR 324 (433)
Q Consensus 254 ~~~~~~g~~~~A~~-----~~~~----~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 324 (433)
.++...|+.++|+. .|.. -+-+++-.+.+.+..++.-+..+....-|.+.+++... .......+...++
T Consensus 711 EmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--~ksiVqlHve~~~ 788 (1081)
T KOG1538|consen 711 EMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--LKSLVQLHVETQR 788 (1081)
T ss_pred HHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--HHHHhhheeeccc
Confidence 67778888888876 1111 22223333333333333333333333333333322111 1111244556677
Q ss_pred CCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhc
Q 013948 325 SHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSG 374 (433)
Q Consensus 325 ~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al 374 (433)
+.+|...- +..| +-.+.+|+..| .++.+..++++|.+.|.+|-
T Consensus 789 W~eAFalA--e~hP----e~~~dVy~pya-qwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 789 WDEAFALA--EKHP----EFKDDVYMPYA-QWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred chHhHhhh--hhCc----cccccccchHH-HHhhhhhhHHHHHHHHHHhc
Confidence 77775422 2333 23345778888 88888888888888887764
|
|
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=80.07 E-value=9.5 Score=31.48 Aligned_cols=51 Identities=18% Similarity=0.100 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 228 (433)
.+.....+...+..|++.-|.++...++..+|++..+...++.++.++|.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 456666777778888888888888888888888888888888888777743
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 433 | ||||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 6e-24 | ||
| 3sz7_A | 164 | Crystal Structure Of The Sgt2 Tpr Domain From Asper | 7e-17 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 7e-17 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 2e-16 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 2e-14 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 6e-12 | ||
| 4gco_A | 126 | Central Domain Of Stress-Induced Protein-1 (Sti-1) | 7e-11 | ||
| 1wao_1 | 477 | Pp5 Structure Length = 477 | 9e-11 | ||
| 1elw_A | 118 | Crystal Structure Of The Tpr1 Domain Of Hop In Comp | 2e-10 | ||
| 2lni_A | 133 | Solution Nmr Structure Of Stress-Induced-Phosphopro | 2e-10 | ||
| 1a17_A | 166 | Tetratricopeptide Repeats Of Protein Phosphatase 5 | 2e-10 | ||
| 2bug_A | 140 | Solution Structure Of The Tpr Domain From Protein P | 4e-10 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 5e-10 | ||
| 3uq3_A | 258 | Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = | 1e-09 | ||
| 2c2l_A | 281 | Crystal Structure Of The Chip U-Box E3 Ubiquitin Li | 5e-08 | ||
| 3upv_A | 126 | Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = | 7e-08 | ||
| 3q47_B | 137 | Crystal Structure Of Tpr Domain Of Chip Complexed W | 9e-08 | ||
| 3fp2_A | 537 | Crystal Structure Of Tom71 Complexed With Hsp82 C-T | 1e-07 | ||
| 3lca_A | 533 | Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term | 1e-07 | ||
| 2gw1_A | 514 | Crystal Structure Of The Yeast Tom70 Length = 514 | 4e-07 | ||
| 1p5q_A | 336 | Crystal Structure Of Fkbp52 C-Terminal Domain Lengt | 2e-06 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-06 | ||
| 1qz2_A | 336 | Crystal Structure Of Fkbp52 C-Terminal Domain Compl | 9e-06 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 2e-05 | ||
| 1kt0_A | 457 | Structure Of The Large Fkbp-like Protein, Fkbp51, I | 2e-05 | ||
| 1kt1_A | 457 | Structure Of The Large Fkbp-Like Protein, Fkbp51, I | 3e-05 | ||
| 1ihg_A | 370 | Bovine Cyclophilin 40, Monoclinic Form Length = 370 | 9e-05 | ||
| 1elr_A | 131 | Crystal Structure Of The Tpr2a Domain Of Hop In Com | 2e-04 | ||
| 3esk_A | 129 | Structure Of Hop Tpr2a Domain In Complex With The N | 3e-04 |
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126 | Back alignment and structure |
|
| >pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477 | Back alignment and structure |
|
| >pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118 | Back alignment and structure |
|
| >pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133 | Back alignment and structure |
|
| >pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258 | Back alignment and structure |
|
| >pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 | Back alignment and structure |
|
| >pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126 | Back alignment and structure |
|
| >pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137 | Back alignment and structure |
|
| >pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537 | Back alignment and structure |
|
| >pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533 | Back alignment and structure |
|
| >pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514 | Back alignment and structure |
|
| >pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457 | Back alignment and structure |
|
| >pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457 | Back alignment and structure |
|
| >pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370 | Back alignment and structure |
|
| >pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex With The Hsp90 Peptide Meevd Length = 131 | Back alignment and structure |
|
| >pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The Non-Cognate Hsc70 Peptide Ligand Length = 129 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 7e-51
Identities = 58/123 (47%), Positives = 81/123 (65%), Gaps = 1/123 (0%)
Query: 174 QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVR 233
AE K +GN M+ + + A+ Y AI L NAVY+ NRAAAY+++ YA AV+
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67
Query: 234 DCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293
DC ++I IDP YSKAY R+GLA + + +A+ +KKAL+LDP+NE K N+++AE K
Sbjct: 68 DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAY-YKKALELDPDNETYKSNLKIAELK 126
Query: 294 LRE 296
LRE
Sbjct: 127 LRE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-05
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 237 KSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+ D ++ G N+ A+ + KA++L+P N
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHF-YGKAIELNPAN 45
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 5e-50
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
K +GN+ + DA++ YS AI L +N V YSNR+AAY + Y +A D K
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293
++D+ P++ K YSR A + +A +++ L+ + NN +KE ++ E +
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKR-TYEEGLKHEANNPQLKEGLQNMEAR 118
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 5e-49
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 171 AYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAE 230
AY LA+ K +GN + Y A+ Y+ A+ NA+ YSNRAA T++ ++
Sbjct: 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQR 65
Query: 231 AVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA 290
A+ DC I +D + K Y R A ++ A ++ ALQ+DP+NE +E +R
Sbjct: 66 ALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQR-AYEDALQVDPSNEEAREGVRNC 124
Query: 291 EQ 292
+
Sbjct: 125 LR 126
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 1e-48
Identities = 36/128 (28%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Query: 171 AYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAE 230
A AE K Q N +++ Y +AI+ YS AI L +NA+YY NR+ AY + Y
Sbjct: 6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGY 65
Query: 231 AVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA 290
A+ D ++I++D Y K Y R + A G + A+ + ++ +++ P+++ K +
Sbjct: 66 ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL-RDYETVVKVKPHDKDAKMKYQEC 124
Query: 291 EQKLREER 298
+ ++++
Sbjct: 125 NKIVKQKA 132
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 2e-48
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 172 YNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEA 231
+ + A+ K QGNR+ ++Y +A Y AI AVYY+NRA Y ++ Q +A
Sbjct: 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 62
Query: 232 VRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN-----EAVKEN 286
+ DC +++++D KA+ LG +Y++AI ++A L + +
Sbjct: 63 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIAN-LQRAYSLAKEQRLNFGDDIPSA 121
Query: 287 IRMAEQKLRE--ERQR 300
+R+A++K E +R
Sbjct: 122 LRIAKKKRWNSIEERR 137
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 3e-48
Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Query: 165 EKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ 224
H++ +LA + K +GN Q Y A++ Y+ AI +A YSNRAA YT+
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284
+ ++ A++DC + I ++P + K Y+R A A +Y A++ ++KAL LD + +
Sbjct: 63 LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV-YQKALDLDSSCKEAA 121
Query: 285 ENIRMAEQKLR 295
+ +
Sbjct: 122 DGYQRCMMAQY 132
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 4e-47
Identities = 45/134 (33%), Positives = 77/134 (57%), Gaps = 3/134 (2%)
Query: 168 GAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227
G + ++ K +GN M ++YS AI+LY+ A+++ N +Y SNRAAAY+ Q
Sbjct: 1 GPRSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ 60
Query: 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN--EAVKE 285
+ +A D + +DP YSKA+SRLGLA + +Y A E ++K ++ + N +A+K
Sbjct: 61 HEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKE-AYEKGIEAEGNGGSDAMKR 119
Query: 286 NIRMAEQKLREERQ 299
+ ++K+ E +
Sbjct: 120 GLETTKRKIEEANR 133
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 1e-46
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE + +G + +A++ Y+ I +A YSNRAAA ++ + EA+ DC K
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I+ DPN+ +AY R A A Y A+E A D + + +
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALET-LDAARTKDAEVNNGSSAREIDQLYYKAS 122
Query: 298 RQR 300
+QR
Sbjct: 123 QQR 125
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 1e-43
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
A K GN + + + A++ Y A L N Y +N+AA Y + Y + C K
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 238 SIDIDPN-------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA 290
+I++ +KAY+R+G +Y+ + Y DAI + K+L + +K + A
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIH-FYNKSLAEHRTPDVLK-KCQQA 121
Query: 291 EQKLREERQ 299
E+ L+E+ +
Sbjct: 122 EKILKEQER 130
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 3e-43
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 171 AYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG---NNAVYYSNRAAAYTQIHQ 227
A + E + +GN + + Y A+ Y+ A+ L + AV + NRAA + ++
Sbjct: 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED 80
Query: 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENI 287
Y +A + K+I+ D KA R A G + A+ ++ + L+P N+ +E +
Sbjct: 81 YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVL-DLQRCVSLEPKNKVFQEAL 139
Query: 288 R 288
R
Sbjct: 140 R 140
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 1e-40
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 174 QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVR 233
+ A K GN + + + A Y AI L +N +Y+N+AA Y + ++AE V+
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 234 DCLKSIDIDPN-------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286
C K++++ +KA SR G A+ Q + + A++ F ++L + E VK
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQ-WFHRSLSEFRDPELVK-K 121
Query: 287 IRMAEQ 292
++ E+
Sbjct: 122 VKELEK 127
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-06
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 240 DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL 294
+ + + A LG A Y Q ++ A + KA++LDP+N N +
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVH-YDKAIELDPSNITFYNNKAAVYFEE 55
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 145 bits (366), Expect = 1e-40
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 6/128 (4%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
A+ K QGNR+ ++Y +A Y AI AVYY+NRA Y ++ Q +A+ DC +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN-----EAVKENIRMAEQ 292
++++D KA+ LG +Y++AI ++A L + + +R+A++
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIAN-LQRAYSLAKEQRLNFGDDIPSALRIAKK 122
Query: 293 KLREERQR 300
K +
Sbjct: 123 KRWNSIEE 130
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 2e-38
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 1/109 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
E K QGN + + Y +A+ Y I N V YSN+A A ++ +Y +A++ C +
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286
+ R Y A+ +++D E +
Sbjct: 64 GLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVVEVDELPEGYDRS 111
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 8e-33
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 17/141 (12%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----------------AVYYSNRA 219
A K +GN + + ++AI Y A+ + N A
Sbjct: 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95
Query: 220 AAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279
Y + Y +A+ K + ID N KA +LG+A G +A E KA L+PN
Sbjct: 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN-LYKAASLNPN 154
Query: 280 NEAVKENIRMAEQKLREERQR 300
N ++ + + KL+E R++
Sbjct: 155 NLDIRNSYELCVNKLKEARKK 175
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 1e-32
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 4/141 (2%)
Query: 157 FHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYS 216
+ + E AY AE + +G + +A++ Y+ I +A YS
Sbjct: 121 AEKELKKAEAE---AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS 177
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
NRAAA ++ + EA+ DC K+I+ DPN+ +AY R A A Y A+E A
Sbjct: 178 NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET-LDAARTK 236
Query: 277 DPNNEAVKENIRMAEQKLREE 297
D + + +
Sbjct: 237 DAEVNNGSSAREIDQLYYKAS 257
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 1e-26
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
++A+ K +GN+ +++Q+ +AIE Y+ A L + Y +NRAAA + +Y A+
Sbjct: 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL-HKDITYLNNRAAAEYEKGEYETAISTL 61
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282
+++ Y + ++ GN + KK ++ +
Sbjct: 62 NDAVEQGREMRADYKVISKSFARIGNAYHKLGD-LKKTIEYYQKSLT 107
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 7e-21
Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 5/124 (4%)
Query: 157 FHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYS 216
+ + +++K Y QK+L E + + + + ++ + A
Sbjct: 88 AYHKLGDLKK--TIEYYQKSLTEHRT--ADILTKLRNAEKELKKAEAEAYVNPEKAEEAR 143
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
Y + AV+ + I P ++ YS A ++ +AI KA++
Sbjct: 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD-CNKAIEK 202
Query: 277 DPNN 280
DPN
Sbjct: 203 DPNF 206
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 7e-08
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 243 PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282
+ + G +Y +++AIE + KA +L +
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEH-YNKAWELHKDITY 40
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 3e-32
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
E G +++ + Q +DA+ + A+ +N + Y RA + + + A+ D K
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
I + +++ A + G QG ++A + FKK L+ +P+ + KE + +
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDD-FKKVLKSNPSEQEEKEAESQLVKADEMQ 121
Query: 298 RQ 299
R
Sbjct: 122 RL 123
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 3e-30
Identities = 25/134 (18%), Positives = 61/134 (45%), Gaps = 5/134 (3%)
Query: 171 AYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVY----YSNRAAAYTQIH 226
Y Q +++ +Y+DA Y + + A Y +++
Sbjct: 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDE 286
Query: 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286
+ EA+R C + + ++P+ A AY + Y++AI+ ++ A + + N++ ++E
Sbjct: 287 KPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD-YEAAQEHNENDQQIREG 345
Query: 287 IRMAEQKLREERQR 300
+ A++ L++ ++R
Sbjct: 346 LEKAQRLLKQSQKR 359
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-26
Identities = 21/150 (14%), Positives = 59/150 (39%), Gaps = 12/150 (8%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQ--------GNRVMQSQQYSDAIEL 200
++D+A F + + S +++ K Y+ AI
Sbjct: 86 KLDEAEDDFKKVL-KSNPSEQEEKE--AESQLVKADEMQRLRSQALDAFDGADYTAAITF 142
Query: 201 YSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG 260
+ +C +A RA + + + +A+ D + + + ++A+ ++ YY G
Sbjct: 143 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG 202
Query: 261 NYNDAIEKGFKKALQLDPNNEAVKENIRMA 290
++ ++ + ++ L+LD +++ + +
Sbjct: 203 DHELSLSE-VRECLKLDQDHKRCFAHYKQV 231
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 8e-19
Identities = 22/149 (14%), Positives = 49/149 (32%), Gaps = 28/149 (18%)
Query: 157 FHDAINEMEK------SGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN 210
+ AI ++K A AE F +G + AI A L +
Sbjct: 136 YTAAITFLDKILEVCVWDAELRE--LRAECFIKEG-------EPRKAISDLKAASKLKSD 186
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL------------GLAYYA 258
N + + Y Q+ + ++ + + + +D ++ + ++
Sbjct: 187 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 246
Query: 259 QGNYNDAIEKGFKKALQLDPNNEAVKENI 287
G Y DA K ++ ++ +P+
Sbjct: 247 DGRYTDATSK-YESVMKTEPSVAEYTVRS 274
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 15/127 (11%), Positives = 32/127 (25%), Gaps = 25/127 (19%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR---------- 218
A + QG + +A + + + +
Sbjct: 71 TAARL--QRGHLLLKQG-------KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121
Query: 219 -----AAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKA 273
A Y A+ K +++ ++ + +G AI K A
Sbjct: 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD-LKAA 180
Query: 274 LQLDPNN 280
+L +N
Sbjct: 181 SKLKSDN 187
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270
+ + Q A+A+ ++D DP+ AY R + A G A+
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD-L 60
Query: 271 KKALQLDPNNE 281
K + L +
Sbjct: 61 TKVIALKMDFT 71
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 8e-32
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
E G +++ + Q +DA+ + A+ +N + Y RA + + + A+ D K
Sbjct: 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQ 292
I + +++ A + G QG ++A + FKK L+ +P+ KE +
Sbjct: 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDD-FKKVLKSNPSENEEKEAQSQLIK 139
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-28
Identities = 23/159 (14%), Positives = 68/159 (42%), Gaps = 9/159 (5%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLA---EIFKCQGNRVMQSQQYSDAIELYSFAI 205
+ + + + ++++ + +++ +Y+DA Y +
Sbjct: 226 DHELSLSEVRECL-KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 284
Query: 206 ALCGNNAVY----YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN 261
+ A Y +++ + EA+R C + + ++P+ A AY +
Sbjct: 285 KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM 344
Query: 262 YNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQR 300
Y++AI+ ++ A + + N++ ++E + A++ L++ ++R
Sbjct: 345 YDEAIQD-YETAQEHNENDQQIREGLEKAQRLLKQSQKR 382
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 22/153 (14%), Positives = 64/153 (41%), Gaps = 8/153 (5%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNL------AEIFKCQGNRVMQSQQYSDAIELYS 202
++D+A F + + S ++ + + Q S Y+ AI
Sbjct: 109 KLDEAEDDFKKVL-KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167
Query: 203 FAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNY 262
+ +C +A RA + + + +A+ D + + + ++A+ ++ YY G++
Sbjct: 168 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDH 227
Query: 263 NDAIEKGFKKALQLDPNNEAVKENIRMAEQKLR 295
++ + ++ L+LD +++ + + ++ +
Sbjct: 228 ELSLSE-VRECLKLDQDHKRCFAHYKQVKKLNK 259
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 6e-18
Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 22/160 (13%)
Query: 157 FHDAINEMEKSGAHAYNQKNLAEIFKCQGNRV---MQSQQYSDAIELYSFAIALCGNNAV 213
+ DA ++ E + + + ++ +AI + S + + +N
Sbjct: 273 YTDATSKYES--VMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVN 330
Query: 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG------------- 260
+RA AY Y EA++D + + + N + L A
Sbjct: 331 ALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390
Query: 261 ----NYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296
+ I+ K ALQ P+N +E + AE+K +
Sbjct: 391 KRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFID 430
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 4e-16
Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 28/145 (19%)
Query: 157 FHDAINEMEK------SGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN 210
+ AI ++K A AE F +G + AI A L +
Sbjct: 159 YTAAIAFLDKILEVCVWDAELRE--LRAECFIKEG-------EPRKAISDLKAASKLKND 209
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA------------YYA 258
N + + Y Q+ + ++ + + + +D ++ + ++
Sbjct: 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 269
Query: 259 QGNYNDAIEKGFKKALQLDPNNEAV 283
G Y DA K ++ ++ +P+
Sbjct: 270 DGRYTDATSK-YESVMKTEPSIAEY 293
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 26/153 (16%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
Q+ A FH A+ + + AY A +F G + A+ + I L
Sbjct: 41 QLADALSQFHAAV-DGDPDNYIAYY--RRATVFLAMG-------KSKAALPDLTKVIQLK 90
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYS---------------RLG 253
+ R + + EA D K + +P+ ++
Sbjct: 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQA 150
Query: 254 LAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286
L + G+Y AI K L++ + ++E
Sbjct: 151 LNAFGSGDYTAAIAF-LDKILEVCVWDAELREL 182
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 28/137 (20%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
+ +A R+ + + +ME +A + AE + + Y +AI+ Y A
Sbjct: 310 KPVEAIRVCSEVL-QMEPDNVNALK--DRAEAYLIEEM-------YDEAIQDYETAQEHN 359
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDID------------------PNYSKAYS 250
N+ A + Q + + + + P+ +
Sbjct: 360 ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEE 419
Query: 251 RLGLAYYAQGNYNDAIE 267
A + A E
Sbjct: 420 EKKKAEKKFIDIAAAKE 436
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 1e-31
Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 20/145 (13%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN------------------NAVYYSN 217
E + +GN + + Y +AI+ Y A+ N Y+N
Sbjct: 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68
Query: 218 RAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD 277
+ Y I EA + + + KA R A A ++A E K L+
Sbjct: 69 MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEED-LKLLLRNH 127
Query: 278 PNN-EAVKENIRMAEQKLREERQRT 301
P V +++ ++ E++ +
Sbjct: 128 PAAASVVAREMKIVTERRAEKKADS 152
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 4e-31
Identities = 35/126 (27%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE K Q N +++ Y +AI+ YS AI L +NA+YY NR+ AY + Y A+ D +
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I++D Y K Y R + A G + A+ + ++ +++ P+++ K + + ++++
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAAL-RDYETVVKVKPHDKDAKMKYQECNKIVKQK 124
Query: 298 RQRTGW 303
Sbjct: 125 AFERAI 130
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 8e-31
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Query: 174 QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVR 233
+ A K +GN+ ++++Y DAI+ Y++A+ L + V+YSN +A Y + + V
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVE 60
Query: 234 DCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293
K++++ P+YSK R A G + DA+ +L D N+ +++ + K
Sbjct: 61 MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNK 120
Query: 294 LREER 298
+
Sbjct: 121 QAMSK 125
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 8e-27
Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 20/159 (12%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
+ D +F +A N AEI + + A++ Y AI L
Sbjct: 353 KFDDCETLFSEAK-RKFPEAPEVPN--FFAEILTDKN-------DFDKALKQYDLAIELE 402
Query: 209 GNNAVYYSNRAAAYTQ---------IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ 259
Y A + + + EA K+ +DP +A L Q
Sbjct: 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462
Query: 260 GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298
+ ++AI F+++ L E + I AE ++R
Sbjct: 463 EDIDEAITL-FEESADLARTMEEKLQAITFAEAAKVQQR 500
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 2e-22
Identities = 16/152 (10%), Positives = 51/152 (33%), Gaps = 11/152 (7%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
+ F A+ +++ + + Y + ++ Y A + + A L
Sbjct: 285 DSTEYYNYFDKAL-KLDSNNSSVYY--HRGQMNFILQ-------NYDQAGKDFDKAKELD 334
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
N Y A + +++ + ++ P + + + +++ A+++
Sbjct: 335 PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ 394
Query: 269 GFKKALQLDPNNEAVKENIRMAEQKLREERQR 300
+ A++L+ + + I K +
Sbjct: 395 -YDLAIELENKLDGIYVGIAPLVGKATLLTRN 425
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 6e-22
Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 10/112 (8%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
++Y +A I + ++ + A+ L NN+ Y +R + Y
Sbjct: 270 VNSYI--YMALIMADRN-------DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+A +D K+ ++DP Y +L Y + ++D F +A + P
Sbjct: 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETL-FSEAKRKFPEA 371
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 2e-20
Identities = 26/157 (16%), Positives = 55/157 (35%), Gaps = 20/157 (12%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
D+A + F A E++ Y LA + + ++ D L+S A
Sbjct: 319 NYDQAGKDFDKAK-ELDPENIFPYI--QLACLAYREN-------KFDDCETLFSEAKRKF 368
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY---------YAQ 259
+ A T + + +A++ +I+++ Y +
Sbjct: 369 PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428
Query: 260 GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296
N+ +A +KA +LDP +E K + + + +
Sbjct: 429 ENFIEATNL-LEKASKLDPRSEQAKIGLAQMKLQQED 464
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 1e-17
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 192 QQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSR 251
+ + + ++ + L A+ + + A D K+I++ P + +Y
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIY 275
Query: 252 LGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+ L + + + F KAL+LD NN
Sbjct: 276 MALIMADRNDSTEYYNY-FDKALKLDSNN 303
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 23/131 (17%), Positives = 40/131 (30%), Gaps = 11/131 (8%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
DKA + + AI E+E Y R + + +A L A L
Sbjct: 387 DFDKALKQYDLAI-ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
+ A Q EA+ +S D+ + + A A+
Sbjct: 446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAK--------- 496
Query: 269 GFKKALQLDPN 279
++ ++ DP
Sbjct: 497 -VQQRIRSDPV 506
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 3e-14
Identities = 21/172 (12%), Positives = 53/172 (30%), Gaps = 2/172 (1%)
Query: 112 EPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHA 171
D S + + + D + + + S + +++
Sbjct: 102 NGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161
Query: 172 YNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ-IHQYAE 230
+ + IFK + + EL + L + Y ++T+ + E
Sbjct: 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221
Query: 231 AVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282
+ + + + + G+ + + + A E KKA++L P +
Sbjct: 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHED-IKKAIELFPRVNS 272
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 25/153 (16%), Positives = 45/153 (29%), Gaps = 21/153 (13%)
Query: 157 FHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN------ 210
F DA+ ++ + E + + + A A
Sbjct: 89 FADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA 148
Query: 211 -------NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYN 263
+ A++ I + + +S + D S L + +Y+
Sbjct: 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS--NLYKRSPESYD 206
Query: 264 DAIEKGFKKALQ-----LDPNNEAVKENIRMAE 291
A E F KA + LD NNE K ++A
Sbjct: 207 KADES-FTKAARLFEEQLDKNNEDEKLKEKLAI 238
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 2e-30
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 174 QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---------------AVYYSNR 218
+ + I K +G + +Y A+ Y ++ + N
Sbjct: 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202
Query: 219 AAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278
A + ++ ++ A+ C K++++D N K SR G A+ A ++ A F+K LQL P
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARAD-FQKVLQLYP 261
Query: 279 NNEAVKENIRMAEQKLREERQR 300
NN+A K + + +Q++R + R
Sbjct: 262 NNKAAKTQLAVCQQRIRRQLAR 283
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 2e-27
Identities = 32/127 (25%), Positives = 61/127 (48%)
Query: 173 NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAV 232
++ A K +GN ++ +++AI+ Y +AI L N V+YSN +A Y + +
Sbjct: 20 QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVI 79
Query: 233 RDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQ 292
K+++I P++SKA R A + GN+ DA+ +L D + +++ +
Sbjct: 80 EFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLN 139
Query: 293 KLREERQ 299
K +
Sbjct: 140 KQAMKVL 146
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 4e-25
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 15/129 (11%)
Query: 157 FHDAINEMEKS-----GAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN 211
DA +++S ++Y LA + + + + A+ L
Sbjct: 259 LLDAQVLLQESINLHPTPNSYI--FLALTLADKE-------NSQEFFKFFQKAVDLNPEY 309
Query: 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFK 271
Y +R Y + Y A D K+ ++P Y +L Y QG + ++ F
Sbjct: 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF-FN 368
Query: 272 KALQLDPNN 280
+ P
Sbjct: 369 ETKLKFPTL 377
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 21/146 (14%), Positives = 51/146 (34%), Gaps = 11/146 (7%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
+ + F A+ ++ Y + +++ Y +A E + A +L
Sbjct: 291 NSQEFFKFFQKAV-DLNPEYPPTYY--HRGQMYFILQ-------DYKNAKEDFQKAQSLN 340
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
N Y A + ++ E+ ++ P + + +G+++ AI++
Sbjct: 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ 400
Query: 269 GFKKALQLDPNNEAVKENIRMAEQKL 294
+ A +L+ E + I K
Sbjct: 401 -YDIAKRLEEVQEKIHVGIGPLIGKA 425
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 27/166 (16%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
+ ++ F++ + AEI +G + AI+ Y A L
Sbjct: 359 KFTESEAFFNETK-LKFPTLPEVPT--FFAEILTDRG-------DFDTAIKQYDIAKRLE 408
Query: 209 GNNAVYYSNRAAAYTQIH----------------QYAEAVRDCLKSIDIDPNYSKAYSRL 252
+ + ++ A++ K+ ++DP +A L
Sbjct: 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468
Query: 253 GLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298
++AIE F+ + L + + AE ++R
Sbjct: 469 AQLKLQMEKIDEAIEL-FEDSAILARTMDEKLQATTFAEAAKIQKR 513
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 2e-20
Identities = 30/205 (14%), Positives = 61/205 (29%), Gaps = 12/205 (5%)
Query: 76 DALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFH 135
L + D +S +A K + E+ +++ + F
Sbjct: 117 SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN-TSLASFFGIFD 175
Query: 136 YFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYS 195
+ S D A + DA+ + + + K Y
Sbjct: 176 S-HLEVSSVNTSSNYDTAYALLSDALQRLYSA-TDEGYLVANDLLTKSTD-------MYH 226
Query: 196 DAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255
+ + L N A+ + + +A +SI++ P +Y L L
Sbjct: 227 SLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALT 285
Query: 256 YYAQGNYNDAIEKGFKKALQLDPNN 280
+ N + + F+KA+ L+P
Sbjct: 286 LADKENSQEFFKF-FQKAVDLNPEY 309
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 9e-20
Identities = 23/164 (14%), Positives = 51/164 (31%), Gaps = 27/164 (16%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
A F A + + Y LA + QG ++++ ++
Sbjct: 325 DYKNAKEDFQKAQ-SLNPENVYPYI--QLACLLYKQGK-------FTESEAFFNETKLKF 374
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA------------- 255
+ A T + A++ + ++ K + +G
Sbjct: 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434
Query: 256 ---YYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296
+ +N AI+ KA +LDP +E K + + ++ +
Sbjct: 435 DPTQLDEEKFNAAIKL-LTKACELDPRSEQAKIGLAQLKLQMEK 477
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 2e-17
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 193 QYSDAIELYSFAIALCGNN----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKA 248
+ + + L + AV NR + + EA++ +I++DPN
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 249 YSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
YS + Y + G+ IE KAL++ P++
Sbjct: 62 YSNISACYISTGDLEKVIEF-TTKALEIKPDH 92
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 4e-16
Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 16/173 (9%)
Query: 125 GQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYN--------QKN 176
G F A+ D + + + A+ + ++ + +
Sbjct: 107 GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS 166
Query: 177 LAEIFKC-----QGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYT--QIHQYA 229
LA F + + V S Y A L S A+ + A Y
Sbjct: 167 LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYH 226
Query: 230 EAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282
+ + N + A G+ ++ + N DA ++++ L P +
Sbjct: 227 SLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVL-LQESINLHPTPNS 278
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 8e-14
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 17/139 (12%)
Query: 151 DKASRI---FHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL 207
D A R+ + + + Q + ++++ AI+L + A L
Sbjct: 402 DIAKRLEEVQEKIHVGI----GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457
Query: 208 CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267
+ A Q+ + EA+ S + + A A+
Sbjct: 458 DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAK-------- 509
Query: 268 KGFKKALQLDPNNEAVKEN 286
+K L+ DP A E
Sbjct: 510 --IQKRLRADPIISAKMEL 526
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-25
Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 150 VDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG 209
+ + H + + + +H + Q R + Y A E ++ AI
Sbjct: 1 MGSSHHHHHHSSGLVPRG-SHMAS--MTGG---QQMGRGSEFGDYEKAAEAFTKAIEENK 54
Query: 210 NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269
+A+ Y N A + +++ A+ K++++D + + AY G Y + Y +A +
Sbjct: 55 EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKD-M 113
Query: 270 FKKALQLDPNN 280
F+KAL+ N
Sbjct: 114 FEKALRAGMEN 124
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 2e-23
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 10/112 (8%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
+ L + Q A+ A+ L N+
Sbjct: 125 GDLFY--MLGTVLVKLE-------QPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
EA+ + DP ++ A+ G+ Y + N A+E KA+ + P++
Sbjct: 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM-LDKAIDIQPDH 226
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 2e-23
Identities = 17/112 (15%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
A AY ++ + Y +A +++ A+ N + ++ Q
Sbjct: 91 ATAYY--GAGNVYVVKE-------MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQP 141
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
A+ ++++++ N ++A + G+ +G ++A+ + F + DP +
Sbjct: 142 KLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ-FAAVTEQDPGH 192
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 1e-21
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 10/112 (8%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
A Y N A + + A+ Y A+ L + A Y Y Y
Sbjct: 57 AIPYI--NFANLLSSVN-------ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMY 107
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
EA K++ + LG A+ ++A++L+ N+
Sbjct: 108 KEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPY-LQRAVELNEND 158
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 3e-17
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 9/94 (9%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
A +G +A+ ++ +A + N Y
Sbjct: 159 TEARF--QFGMCLANEG-------MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENR 209
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNY 262
+A+ K+IDI P++ A L + ++
Sbjct: 210 EKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 4e-25
Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 5/135 (3%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
++ L +++ G Q+ ++ DA +++ L +A Y+ A + Y
Sbjct: 10 LRGLSEDTLEQLYA-LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY 68
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN---EAVKE 285
+A++ +D N + + G+ + A GF A L EA+
Sbjct: 69 EQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAES-GFYSARALAAAQPAHEALAA 127
Query: 286 NIRMAEQKLREERQR 300
+ + + R
Sbjct: 128 RAGAMLEAVTARKDR 142
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-07
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 237 KSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296
+ + + LG Y G ++DA + F+ LD + + Q L
Sbjct: 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQK-IFQALCMLDHYDARYFLGLGACRQSLGL 67
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 7e-25
Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 14/149 (9%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
DKA + + + + + AE+ C+G DA+ +Y + L
Sbjct: 69 NYDKAYLFYKELL-QKAPNNVDCLE--ACAEMQVCRGQ-------EKDALRMYEKILQLE 118
Query: 209 GNNAVYYSNRAAAY-TQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267
+N Y Q + + K + A R GL+ Y A
Sbjct: 119 ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARN 178
Query: 268 KGFKKALQLDPNNEAVK--ENIRMAEQKL 294
+K + P+ EA K + I E+++
Sbjct: 179 S-LQKVILRFPSTEAQKTLDKILRIEKEV 206
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 3e-23
Identities = 22/146 (15%), Positives = 43/146 (29%), Gaps = 9/146 (6%)
Query: 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN 210
D+ + +++ + + LA +K N Y A Y + N
Sbjct: 36 DRTEMYYWTNVDKNSEISSKLAT--ELALAYKKNRN-------YDKAYLFYKELLQKAPN 86
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270
N A Q +A+R K + ++ + A LG YY +
Sbjct: 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETD 146
Query: 271 KKALQLDPNNEAVKENIRMAEQKLRE 296
K L + + +++
Sbjct: 147 YKKLSSPTKMQYARYRDGLSKLFTTR 172
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 3e-20
Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 17/126 (13%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA----------------VYYSNRAAA 221
+ + + +++ Q A+ + IAL + + A A
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63
Query: 222 YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281
Y + Y +A + + PN +G DA+ ++K LQL+ +N
Sbjct: 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRM-YEKILQLEADNL 122
Query: 282 AVKENI 287
A +
Sbjct: 123 AANIFL 128
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-25
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
AY NLA K +G ++A + Y+ A+ LC +A +N A +
Sbjct: 271 PDAYC--NLANALKEKG-------SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288
EAVR K++++ P ++ A+S L QG +A+ +K+A+++ P N+
Sbjct: 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM-HYKEAIRISPTFADAYSNMG 380
Query: 289 MAEQKLRE 296
+++++
Sbjct: 381 NTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 5e-24
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 11/132 (8%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
++++A + AI E + + A A++ NL +F QG + AI + A+ L
Sbjct: 150 RLEEAKACYLKAI-ETQPNFAVAWS--NLGCVFNAQG-------EIWLAIHHFEKAVTLD 199
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
N Y N + + AV L+++ + PN++ + L YY QG + AI+
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT 259
Query: 269 GFKKALQLDPNN 280
+++A++L P+
Sbjct: 260 -YRRAIELQPHF 270
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 8e-24
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
AY NL + K + A+ Y A++L N+AV + N A Y +
Sbjct: 203 LDAYI--NLGNVLKEAR-------IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI 253
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
A+ ++I++ P++ AY L A +G+ +A + + AL+L P +
Sbjct: 254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED-CYNTALRLCPTH 304
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 8e-24
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 11/132 (8%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
++ A + + A+ + + +L + K G + +A Y AI
Sbjct: 116 DMEGAVQAYVSAL-QYNPDLYCVRS--DLGNLLKALG-------RLEEAKACYLKAIETQ 165
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
N AV +SN + + A+ K++ +DPN+ AY LG ++ A+
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225
Query: 269 GFKKALQLDPNN 280
+ +AL L PN+
Sbjct: 226 -YLRALSLSPNH 236
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 9e-24
Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 11/132 (8%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
+ A R + + L+ I + + + AI
Sbjct: 14 DFEAAERHCMQLWRQEPDN-TGVLL--LLSSIHFQCR-------RLDRSAHFSTLAIKQN 63
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
A YSN Y + Q EA+ ++ + P++ Y L A A G+ A++
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 269 GFKKALQLDPNN 280
+ ALQ +P+
Sbjct: 124 -YVSALQYNPDL 134
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
Q+ +A + A+ ++ Y NLA G A++ Y A+
Sbjct: 82 QLQEAIEHYRHAL-RLKPDFIDGYI--NLAAALVAAG-------DMEGAVQAYVSALQYN 131
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
+ S+ + + EA LK+I+ PN++ A+S LG + AQG AI
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191
Query: 269 GFKKALQLDPNN 280
F+KA+ LDPN
Sbjct: 192 -FEKAVTLDPNF 202
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 6e-23
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
++D+++ AI + A AY+ NL ++K +G Q +AIE Y A+ L
Sbjct: 48 RLDRSAHFSTLAI-KQNPLLAEAYS--NLGNVYKERG-------QLQEAIEHYRHALRLK 97
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
+ Y N AAA AV+ + ++ +P+ S LG A G +A
Sbjct: 98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAC 157
Query: 269 GFKKALQLDPNN 280
+ KA++ PN
Sbjct: 158 -YLKAIETQPNF 168
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 2e-22
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 10/126 (7%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
A + NLA ++ QG AI+ Y AI L + Y N A A +
Sbjct: 237 AVVHG--NLACVYYEQG-------LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV 287
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288
AEA ++ + P ++ + + L QGN +A+ ++KAL++ P A N+
Sbjct: 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR-LYRKALEVFPEFAAAHSNLA 346
Query: 289 MAEQKL 294
Q+
Sbjct: 347 SVLQQQ 352
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 6e-21
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 184 QGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243
+R Q+ + A +N ++ + Q + + +I +P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 244 NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
++AYS LG Y +G +AIE ++ AL+L P+
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEH-YRHALRLKPDF 100
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 7e-14
Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274
A Q + A R C++ +P+ + L ++ + + A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHF-STLAI 60
Query: 275 QLDPNN 280
+ +P
Sbjct: 61 KQNPLL 66
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 102 bits (254), Expect = 2e-24
Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 18/140 (12%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVY-----------------YSNRAA 220
A+ K GN + + ++ +A++ Y AIA G++ ++ + N AA
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAA 238
Query: 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
++ +Y EA+ C + + KA R G A G + A + F+KA + P++
Sbjct: 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDD-FRKAQKYAPDD 297
Query: 281 EAVKENIRMAEQKLREERQR 300
+A++ +R ++ + Q+
Sbjct: 298 KAIRRELRALAEQEKALYQK 317
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-24
Identities = 28/129 (21%), Positives = 44/129 (34%), Gaps = 11/129 (8%)
Query: 152 KASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN 211
K + + K+ + + +I +G Q S AI+ Y A+
Sbjct: 58 KDIETYFSKV-NATKAKSADFE--YYGKILMKKG-------QDSLAIQQYQAAVDRDTTR 107
Query: 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFK 271
Y + + + A++ K I K + LG AYY Y A F
Sbjct: 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS-SFV 166
Query: 272 KALQLDPNN 280
K L+L PN
Sbjct: 167 KVLELKPNI 175
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 2e-23
Identities = 20/106 (18%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC-- 235
++ + + ++ Y++AIE+++ A N+ Y+ RA Y ++ +Y A +D
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62
Query: 236 -LKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
++ S + G +G + AI++ ++ A+ D
Sbjct: 63 YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQ-YQAAVDRDTTR 107
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 2e-21
Identities = 24/157 (15%), Positives = 45/157 (28%), Gaps = 22/157 (14%)
Query: 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN 210
A + I + + L + + +Y A + + L N
Sbjct: 125 PLAIQYMEKQI-RPTTTDPKVFY--ELGQAYYYNK-------EYVKADSSFVKVLELKPN 174
Query: 211 NAVYYSNRAAAYT---QIHQYAEAVRDCLKSIDIDP--------NYSKAYSRLGLAYYAQ 259
+ Y RA A + A K I++ +A + Y
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234
Query: 260 GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296
+ A +K L LDP N+ + ++M +
Sbjct: 235 RDKVKADAA-WKNILALDPTNKKAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 3e-20
Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 14/139 (10%)
Query: 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN 210
A + + A+ + + + Y + F +GN + AI+ I
Sbjct: 91 SLAIQQYQAAV-DRDTTRLDMYG--QIGSYFYNKGN-------FPLAIQYMEKQIRPTTT 140
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN---YNDAIE 267
+ + AY +Y +A +K +++ PN Y A AQ A
Sbjct: 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKP 200
Query: 268 KGFKKALQLDPNNEAVKEN 286
++K +++ A ++
Sbjct: 201 Y-YEKLIEVCAPGGAKYKD 218
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 1e-14
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE--K 268
N A + + YAEA+ K N Y+R + YY Y+ A + +
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 269 GFKKALQLDPNN 280
+ +
Sbjct: 62 TYFSKVNATKAK 73
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 2e-14
Identities = 20/123 (16%), Positives = 34/123 (27%), Gaps = 15/123 (12%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
+ KA F + E++ + Y A Q + A Y I +C
Sbjct: 157 EYVKADSSFVKVL-ELKPNIYIGYL--WRARANAAQD----PDTKQGLAKPYYEKLIEVC 209
Query: 209 GNNAVY--------YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG 260
A YT +A + +DP KA L +
Sbjct: 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269
Query: 261 NYN 263
+++
Sbjct: 270 HHH 272
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 95.9 bits (240), Expect = 4e-24
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 10/112 (8%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
A A+ NL + QG Y +AIE Y A+ L +A + N AY + Y
Sbjct: 35 AEAWY--NLGNAYYKQG-------DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
EA+ K++++DP ++A+ LG AYY QG+Y++AIE ++KAL+LDP +
Sbjct: 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY-YQKALELDPRS 136
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 93.2 bits (233), Expect = 5e-23
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 10/112 (8%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
A A+ NL + QG Y +AIE Y A+ L +A + N AY + Y
Sbjct: 1 AEAWY--NLGNAYYKQG-------DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 51
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
EA+ K++++DP ++A+ LG AYY QG+Y++AIE ++KAL+LDP +
Sbjct: 52 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE-YYQKALELDPRS 102
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 1e-23
Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 10/129 (7%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
A ++ G + A +S A+A+ + ++ TQ +
Sbjct: 43 AQLLY--ERGVLYDSLG-------LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288
A +++DP Y+ A+ G+A Y G A + Q DPN+ +
Sbjct: 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD-LLAFYQDDPNDPFRSLWLY 152
Query: 289 MAEQKLREE 297
+AEQKL E+
Sbjct: 153 LAEQKLDEK 161
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 5e-19
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 185 GNRVMQSQQYSDAIELYSFAIALCG----NNAVYYSNRAAAYTQIHQYAEAVRDCLKSID 240
+ + Q + +A A R Y + A A D +++
Sbjct: 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71
Query: 241 IDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
I P+ + ++ LG+ GN++ A E F L+LDP
Sbjct: 72 IRPDMPEVFNYLGIYLTQAGNFDAAYEA-FDSVLELDPTY 110
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 2e-15
Identities = 20/151 (13%), Positives = 40/151 (26%), Gaps = 15/151 (9%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
+ A + + + LAE Q A E+
Sbjct: 126 RDKLAQDDLLAFY-QDDPNDPFRSLWLYLAE----------QKLDEKQAKEVLKQHFEKS 174
Query: 209 GNNAVYYSNRAAAYTQIHQ---YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDA 265
++ I + D + + + S+ LG Y + G+ + A
Sbjct: 175 DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSA 234
Query: 266 IEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296
FK A+ + +N + L +
Sbjct: 235 TA-LFKLAVANNVHNFVEHRYALLELSLLGQ 264
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 3e-15
Identities = 22/129 (17%), Positives = 34/129 (26%), Gaps = 11/129 (8%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
+N L G + A E + + L + NR A +
Sbjct: 77 PEVFN--YLGIYLTQAG-------NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD 127
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288
A D L DPN L LA A E K+ + + +
Sbjct: 128 KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD-EKQAKEV-LKQHFEKSDKEQWGWNIVE 185
Query: 289 MAEQKLREE 297
+ E+
Sbjct: 186 FYLGNISEQ 194
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 3e-13
Identities = 6/78 (7%), Positives = 18/78 (23%)
Query: 190 QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAY 249
+ + +L + + Y + A ++ + + +
Sbjct: 193 EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 252
Query: 250 SRLGLAYYAQGNYNDAIE 267
L G D +
Sbjct: 253 RYALLELSLLGQDQDDLA 270
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 9/69 (13%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
+ L + + G A L+ A+A +N V + + + Q
Sbjct: 215 SETNF--YLGKYYLSLG-------DLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 265
Query: 229 AEAVRDCLK 237
+ + + +
Sbjct: 266 QDDLAESDQ 274
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 2e-23
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 10/112 (8%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
+L + G EL ++A +N + Y Q+ +Y
Sbjct: 42 VDVAL--HLGIAYVKTG-------AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY 92
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
AV +K + +P RLG+A G +++AI+ FK AL L PN
Sbjct: 93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID-SFKIALGLRPNE 143
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 95.2 bits (238), Expect = 3e-23
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 10/112 (8%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
Y + G +YS A+ L + + AY +
Sbjct: 8 QVYYR--DKGISHAKAG-------RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAV 58
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+S+ P+ K + LGL Y Y+ A+ K + +P N
Sbjct: 59 DRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVP-LLIKVAEANPIN 109
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 94.8 bits (237), Expect = 4e-23
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 10/112 (8%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
L + +Y A+ L N A + ++
Sbjct: 76 VKVAT--VLGLTYVQVQ-------KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRF 126
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
EA+ ++ + PN K + + +Y G + +A+ FKKA +LD
Sbjct: 127 DEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH-FKKANELDEGA 177
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 80.2 bits (199), Expect = 8e-18
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 210 NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269
VYY ++ ++ + +Y++AV + D D LG+AY G + E
Sbjct: 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL- 64
Query: 270 FKKALQLDPNN 280
+++L P+N
Sbjct: 65 LERSLADAPDN 75
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 1e-11
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
+ L G ++ +AI+ + A+ L N + A +Y Q+ ++
Sbjct: 110 FNVRF--RLGVALDNLG-------RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRH 160
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRL 252
EA+ K+ ++D S + +
Sbjct: 161 EEALPHFKKANELDEGASVELALV 184
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 6e-07
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 239 IDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+ D Y G+++ G Y+ A+ ++ D +
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVM-LLEQVYDADAFD 41
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 91.7 bits (229), Expect = 1e-22
Identities = 46/112 (41%), Positives = 66/112 (58%), Gaps = 10/112 (8%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
A A+ NL + QG Y +AIE Y A+ L NNA + N AY + Y
Sbjct: 9 AEAWY--NLGNAYYKQG-------DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY 59
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
EA+ K++++DPN ++A+ LG AYY QG+Y++AIE ++KAL+LDPNN
Sbjct: 60 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE-YYQKALELDPNN 110
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 73.6 bits (182), Expect = 4e-16
Identities = 32/71 (45%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 210 NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269
N+A + N AY + Y EA+ K++++DPN ++A+ LG AYY QG+Y++AIE
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE-Y 65
Query: 270 FKKALQLDPNN 280
++KAL+LDPNN
Sbjct: 66 YQKALELDPNN 76
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 71.3 bits (176), Expect = 3e-15
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
A A+ NL + QG Y +AIE Y A+ L NNA + N AY + Y
Sbjct: 43 AEAWY--NLGNAYYKQG-------DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY 93
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG 260
EA+ K++++DPN ++A LG A QG
Sbjct: 94 DEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 49.3 bits (119), Expect = 1e-07
Identities = 23/41 (56%), Positives = 33/41 (80%), Gaps = 2/41 (4%)
Query: 241 IDP-NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+DP N ++A+ LG AYY QG+Y++AIE ++KAL+LDPNN
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEY-YQKALELDPNN 42
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 1e-22
Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 3/141 (2%)
Query: 143 GNDDPSQVDKASRIFHDAINEMEKSG-AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELY 201
G+ + ++ + S DAIN +A + +I+ + +A +
Sbjct: 1 GSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYS-YAYDFYNKGRIEEAEVFF 59
Query: 202 SFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN 261
F N Y AA Y Q+ +A + + N G
Sbjct: 60 RFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA 119
Query: 262 YNDAIEKGFKKALQLDPNNEA 282
A E F+ +Q + +
Sbjct: 120 PLKAKE-CFELVIQHSNDEKL 139
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 4e-11
Identities = 15/124 (12%), Positives = 33/124 (26%), Gaps = 8/124 (6%)
Query: 173 NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAV 232
N I + + D + + + +Y + A + + EA
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMM-----DDIY--SYAYDFYNKGRIEEAE 56
Query: 233 RDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQ 292
D L Y + + A + + A L N+ + +
Sbjct: 57 VFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADL-YAVAFALGKNDYTPVFHTGQCQL 115
Query: 293 KLRE 296
+L+
Sbjct: 116 RLKA 119
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 2e-21
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Query: 195 SDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGL 254
E +A +N + Y + Q+ A+ ++D DP YS A+ LG
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 255 AYYAQGNYNDAIEKGFKKALQLDPNN--EAVKENIRMAEQKLREE 297
QG+ A + ++ L + + V + +++ ++L E
Sbjct: 62 TLQGQGDRAGARQA-WESGLAAAQSRGDQQVVKELQVFLRRLARE 105
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 3e-21
Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 21/125 (16%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH-- 226
A LA G + A+E +A Y + AY ++
Sbjct: 39 PEALY--WLARTQLKLG-------LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQ 89
Query: 227 ---------QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD 277
+A+ + ++P Y+ + + GL Y G + A K+AL L+
Sbjct: 90 AEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEAS-LKQALALE 148
Query: 278 PNNEA 282
E
Sbjct: 149 DTPEI 153
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 1e-19
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 11/111 (9%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
A + ++ G + A A+AL + S A Y + +
Sbjct: 118 APLHL--QRGLVYALLG-------ERDKAEASLKQALAL-EDTPEIRSALAELYLSMGRL 167
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279
EA+ K+++ P R A +G +A +
Sbjct: 168 DEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARA-AALEHHHHHH 217
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 2e-19
Identities = 20/123 (16%), Positives = 35/123 (28%), Gaps = 21/123 (17%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
L G +Y A+ L+ A+ + A ++
Sbjct: 5 EQNPL--RLGVQLYALG-------RYDAALTLFERALKENPQDPEALYWLARTQLKLGLV 55
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYA-----------QGNYNDAIEKGFKKALQLD 277
A+ + + P Y Y L AY A +G A+ K A +++
Sbjct: 56 NPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSV-LKDAERVN 114
Query: 278 PNN 280
P
Sbjct: 115 PRY 117
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 1e-18
Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 8/116 (6%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQ----QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ 224
Y L+E + + + A+ + A + A + R Y
Sbjct: 73 LGGYM--VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130
Query: 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+ + +A +++ ++ + S L Y + G ++A+ + KAL+ P +
Sbjct: 131 LGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALA-QYAKALEQAPKD 184
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 3e-14
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Query: 210 NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269
+ +Y A+ +++ +P +A L G N A+E
Sbjct: 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN- 61
Query: 270 FKKALQLDPNN 280
K + P
Sbjct: 62 GKTLVARTPRY 72
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 2e-05
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 243 PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+ RLG+ YA G Y+ A+ F++AL+ +P +
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTL-FERALKENPQD 38
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 5e-21
Identities = 23/155 (14%), Positives = 53/155 (34%), Gaps = 20/155 (12%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
A R F A+ + + + + G ++ A + + A+
Sbjct: 174 NSKLAERFFSQAL-SIAPEDPFVMH--EVGVVAFQNG-------EWKTAEKWFLDALEKI 223
Query: 209 G---------NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ 259
+N ++ +YAEA+ +++ + P + YS +G +
Sbjct: 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM 283
Query: 260 GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL 294
GN+ +A++ F AL L ++ + +
Sbjct: 284 GNFENAVDY-FHTALGLRRDDTFSVTMLGHCIEMY 317
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 9e-20
Identities = 19/148 (12%), Positives = 47/148 (31%), Gaps = 10/148 (6%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
+ ++ + H + ++ S ++ + + G + A S A L
Sbjct: 71 KANELFYLSHKLV-DLYPSNPVSWF--AVGCYYLMVG------HKNEHARRYLSKATTLE 121
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
+ ++ ++ +A+ + + +GL Y N A
Sbjct: 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181
Query: 269 GFKKALQLDPNNEAVKENIRMAEQKLRE 296
F +AL + P + V + + + E
Sbjct: 182 -FSQALSIAPEDPFVMHEVGVVAFQNGE 208
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 9e-20
Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 1/112 (0%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
+ Q+N ++ R + + +L S + +A ++++
Sbjct: 14 SVDGLQEN-LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKA 72
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
E K +D+ P+ ++ +G Y G+ N+ + KA L+
Sbjct: 73 NELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY 124
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 2e-18
Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 11/141 (7%)
Query: 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN 210
+ A R A +EK+ A+ F + + A+ Y A L
Sbjct: 108 EHARRYLSKAT-TLEKTYGPAWI--AYGHSFAVESE-------HDQAMAAYFTAAQLMKG 157
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270
+ Y + A R +++ I P +G+ + G + A + F
Sbjct: 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKW-F 216
Query: 271 KKALQLDPNNEAVKENIRMAE 291
AL+ +
Sbjct: 217 LDALEKIKAIGNEVTVDKWEP 237
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
+ A + F DA+ E K+ + + G+ + ++Y++A++ + A+ L
Sbjct: 208 EWKTAEKWFLDAL-EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
NA YS ++ + + AV ++ + + + + + LG ++A
Sbjct: 267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIG 326
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 8e-06
Identities = 6/51 (11%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 230 EAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+ +S+D L +Y ++ + ++ DP +
Sbjct: 6 PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKL-TSVVMEKDPFH 55
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 5e-21
Identities = 18/148 (12%), Positives = 44/148 (29%), Gaps = 7/148 (4%)
Query: 157 FHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYS 216
+ + + L +++ QS Y DA ++ L ++ ++
Sbjct: 3 LGSGGGTIAM--LNEISSDTLEQLYS-LAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFL 59
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
A + QY A+ +D + G +A G A +L
Sbjct: 60 GLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAES-GLFLAQEL 118
Query: 277 D---PNNEAVKENIRMAEQKLREERQRT 301
P + + + ++ +++
Sbjct: 119 IANXPEFXELSTRVSSMLEAIKLKKEMK 146
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 93.6 bits (232), Expect = 6e-21
Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 16/176 (9%)
Query: 140 MPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIE 199
P +P+ E + A I K +G + +Y A+
Sbjct: 230 KPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVI 289
Query: 200 LYSFAIALCGNNAVY---------------YSNRAAAYTQIHQYAEAVRDCLKSIDIDPN 244
Y ++ + N A Y ++ +Y +AV C K++ +D
Sbjct: 290 QYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349
Query: 245 YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQR 300
K R G A + A F+K L+++P N+A + I M ++K +E +R
Sbjct: 350 NEKGLYRRGEAQLLMNEFESAKGD-FEKVLEVNPQNKAARLQISMCQKKAKEHNER 404
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 7e-21
Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 1/127 (0%)
Query: 170 HAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYA 229
A N E +G +++ ++A + + + + +
Sbjct: 13 EANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDG 72
Query: 230 EAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRM 289
A+ + +DP ++ L +++ + N N A+ + L P E +
Sbjct: 73 LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALA-SLRAWLLSQPQYEQLGSVNLQ 131
Query: 290 AEQKLRE 296
A+ + +
Sbjct: 132 ADVDIDD 138
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 8e-20
Identities = 23/143 (16%), Positives = 55/143 (38%), Gaps = 11/143 (7%)
Query: 145 DDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFA 204
P++ + + H A+ EM + A + +L ++ Y A A
Sbjct: 149 AAPNEYRECRTLLHAAL-EMNPNDAQLHA--SLGVLYNLSN-------NYDSAAANLRRA 198
Query: 205 IALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYND 264
+ L ++A ++ A ++ EA+ +++DI+P Y + + ++Y Y+
Sbjct: 199 VELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258
Query: 265 AIEKGFKKALQLDPNNEAVKENI 287
A ++ +A+ +
Sbjct: 259 AAKQ-LVRAIYMQVGGTTPTGEA 280
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 1e-19
Identities = 16/118 (13%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 169 AHAYNQKNLAEIFKCQ------GNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAY 222
+ A++ +Y + L A+ + N+A +++ Y
Sbjct: 123 EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLY 182
Query: 223 TQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+ Y A + +++++ P+ ++ +++LG +A++ + +AL ++P
Sbjct: 183 NLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD-AYNRALDINPGY 239
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-16
Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 25/127 (19%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
A+ +L + AI + A L + ++ A ++T H
Sbjct: 55 EEAWR--SLGLTQAENE-------KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 105
Query: 229 AEAVRDCLKSIDIDPNYSKAYSR---------------LGLAYYAQGNYNDAIEKGFKKA 273
A+ + P Y + S + A Y + A
Sbjct: 106 NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTL-LHAA 164
Query: 274 LQLDPNN 280
L+++PN+
Sbjct: 165 LEMNPND 171
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 16/88 (18%), Positives = 22/88 (25%), Gaps = 1/88 (1%)
Query: 193 QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL 252
Y F + ++ AEA P +A+ L
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 253 GLAYYAQGNYNDAIEKGFKKALQLDPNN 280
GL AI A LDP +
Sbjct: 62 GLTQAENEKDGLAII-ALNHARMLDPKD 88
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 8e-12
Identities = 17/129 (13%), Positives = 42/129 (32%), Gaps = 15/129 (11%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
A +N L + +A++ Y+ A+ + N A +Y+ + QY
Sbjct: 206 AQLWN--KLGATLANGN-------RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288
A + +++I + + ++ F+ L + + V+
Sbjct: 257 DLAAKQLVRAIYMQVGGTTPTGEAS------REATRSMWDFFRMLLNVMNRPDLVELTYA 310
Query: 289 MAEQKLREE 297
+ +E
Sbjct: 311 QNVEPFAKE 319
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 2e-20
Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 9/151 (5%)
Query: 140 MPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIE 199
M D S ++ ++ +A Q L +F G +++ AI+
Sbjct: 183 MSKSPVDSSVLEGVKELYLEAA-HQNGDMIDPDLQTGLGVLFHLSG-------EFNRAID 234
Query: 200 LYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ 259
++ A+ + + ++ A + EAV ++++I P + ++ LG++
Sbjct: 235 AFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL 294
Query: 260 GNYNDAIEKGFKKALQLDPNNEAVKENIRMA 290
G Y +A+ F AL L + ++ A
Sbjct: 295 GAYREAVSN-FLTALSLQRKSRNQQQVPHPA 324
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 4e-20
Identities = 26/177 (14%), Positives = 61/177 (34%), Gaps = 13/177 (7%)
Query: 122 ELFGQFFAALEKFHYFRTMPDGNDDPSQ--VDKASRIFHDAINEMEKSGAHAYNQKNLAE 179
E + + A E+ + + + +Q V + + ++ K A+ +
Sbjct: 17 EFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEE----- 71
Query: 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSI 239
G + ++ I AI +A + + A+ + +
Sbjct: 72 -----GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126
Query: 240 DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296
++ PN KA L ++Y + DA E K ++ +P + + +N + + R
Sbjct: 127 ELQPNNLKALMALAVSYTNTSHQQDACEA-LKNWIKQNPKYKYLVKNKKGSPGLTRR 182
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 2e-15
Identities = 19/138 (13%), Positives = 32/138 (23%), Gaps = 24/138 (17%)
Query: 157 FHDAINEMEK------SGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN 210
I ME A A+ L AI + L N
Sbjct: 81 LPVTILFMEAAILQDPGDAEAWQ--FLGITQAENE-------NEQAAIVALQRCLELQPN 131
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE--- 267
N A +YT +A I +P Y + + +
Sbjct: 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191
Query: 268 ------KGFKKALQLDPN 279
+ + +A + +
Sbjct: 192 VLEGVKELYLEAAHQNGD 209
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 3e-14
Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 22/124 (17%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
A LA + DA E I N+ + +
Sbjct: 133 LKALM--ALAVSYTNTS-------HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM 183
Query: 229 AEAVRDCLKSIDIDPNYSKA------------YSRLGLAYYAQGNYNDAIEKGFKKALQL 276
+++ D + Y +A + LG+ ++ G +N AI+ F AL +
Sbjct: 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID-AFNAALTV 242
Query: 277 DPNN 280
P +
Sbjct: 243 RPED 246
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 3e-12
Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 27/128 (21%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
+N L + +A+E Y+ A+ + N + + Y
Sbjct: 247 YSLWN--RLGATLANGD-------RSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297
Query: 229 AEAVRDCLKSIDIDPNYSKAYS--------------RLGLAYYAQGNYNDAIEKG----F 270
EAV + L ++ + R+ L+ Q A G
Sbjct: 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357
Query: 271 KKALQLDP 278
+A LDP
Sbjct: 358 LRAFNLDP 365
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 3e-20
Identities = 22/149 (14%), Positives = 50/149 (33%), Gaps = 18/149 (12%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
+ A+ + + + N L + + AI + A+ L
Sbjct: 456 NILLANEYLQSSY-ALFQYDPLLLN--ELGVVAFNKS-------DMQTAINHFQNALLLV 505
Query: 209 G-------NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN 261
A ++N AY ++ Y A+ + + + N + ++ + L Y +
Sbjct: 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565
Query: 262 YNDAIEKGFKKALQLDPNNEAVKENIRMA 290
AI ++L + PN + ++ A
Sbjct: 566 PGLAITH-LHESLAISPNEIMASDLLKRA 593
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 91.8 bits (228), Expect = 4e-20
Identities = 16/122 (13%), Positives = 46/122 (37%), Gaps = 1/122 (0%)
Query: 159 DAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR 218
D + E + + +++ C+ + + ++ D + + + + + N Y
Sbjct: 286 DELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH 345
Query: 219 AAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278
A+ + + + +D P + + +G+ Y ++A + F K+ +DP
Sbjct: 346 LASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR-RYFSKSSTMDP 404
Query: 279 NN 280
Sbjct: 405 QF 406
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 7e-20
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 11/138 (7%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
++ +A R F + M+ A+ A F +G + AI Y+ A L
Sbjct: 388 KISEARRYFSKSS-TMDPQFGPAWI--GFAHSFAIEGE-------HDQAISAYTTAARLF 437
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
+ Y + Q+ A S + + LG+ + + + AI
Sbjct: 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINH 497
Query: 269 GFKKALQLDPNNEAVKEN 286
F+ AL L ++ ++
Sbjct: 498 -FQNALLLVKKTQSNEKP 514
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 2e-19
Identities = 18/144 (12%), Positives = 47/144 (32%), Gaps = 11/144 (7%)
Query: 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN 210
+K I +D + + A + + + C + S+A +S + +
Sbjct: 356 NKLYLISNDLV-DRHPEKAVTWL--AVGIYYLCVN-------KISEARRYFSKSSTMDPQ 405
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270
+ A ++ ++ +A+ + + Y LG+ + GN A E
Sbjct: 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEY-L 464
Query: 271 KKALQLDPNNEAVKENIRMAEQKL 294
+ + L + + + +
Sbjct: 465 QSSYALFQYDPLLLNELGVVAFNK 488
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 5e-18
Identities = 20/130 (15%), Positives = 43/130 (33%), Gaps = 11/130 (8%)
Query: 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN 210
I + E++ Y G + + + + +
Sbjct: 322 IDVLAITTKIL-EIDPYNLDVYP--LHLASLHESG-------EKNKLYLISNDLVDRHPE 371
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270
AV + Y +++ +EA R KS +DP + A+ ++ +G ++ AI +
Sbjct: 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA-Y 430
Query: 271 KKALQLDPNN 280
A +L
Sbjct: 431 TTAARLFQGT 440
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 5e-17
Identities = 19/119 (15%), Positives = 36/119 (30%), Gaps = 17/119 (14%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
Y L GN A E + AL + + +
Sbjct: 441 HLPYL--FLGMQHMQLGN-------ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDM 491
Query: 229 AEAVRDCLKSIDI-------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
A+ ++ + + ++ ++ LG AY Y+ AI+ + L L N+
Sbjct: 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA-LNQGLLLSTND 549
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 1e-15
Identities = 16/122 (13%), Positives = 38/122 (31%), Gaps = 2/122 (1%)
Query: 159 DAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR 218
D + ++ S + L ++ + N+ + E Y +I ++ +
Sbjct: 253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNK-TSHEDELRRAEDYLSSINGLEKSSDLLLCK 311
Query: 219 AAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278
A ++ + + K ++IDP Y + + G N + P
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLI-SNDLVDRHP 370
Query: 279 NN 280
Sbjct: 371 EK 372
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 4e-12
Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 10/106 (9%)
Query: 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN 210
A + + + A + NL ++ Y AI+ + + L N
Sbjct: 499 QNALLLVKKTQSNEKPW-AATWA--NLGHAYRKLK-------MYDAAIDALNQGLLLSTN 548
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256
+A ++ A Y A+ +S+ I PN A L A
Sbjct: 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 5e-09
Identities = 13/128 (10%), Positives = 38/128 (29%), Gaps = 1/128 (0%)
Query: 172 YNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEA 231
+ G + +A +L + ++ Y R YT + + A
Sbjct: 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCY-LRGQVYTNLSNFDRA 219
Query: 232 VRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291
+++ +D +A+ +L + + + + + ++ +
Sbjct: 220 KECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279
Query: 292 QKLREERQ 299
K E +
Sbjct: 280 NKTSHEDE 287
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 16/161 (9%), Positives = 37/161 (22%), Gaps = 14/161 (8%)
Query: 123 LFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFK 182
L L + + + F K K A +
Sbjct: 155 LAAFCLVKLYDW----------QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCY 204
Query: 183 CQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCL---KSI 239
+G + A E Y A+ + + + + + L
Sbjct: 205 LRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYS 264
Query: 240 DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
D + ++ L L + + E + ++ +
Sbjct: 265 KEDAAFLRSLYMLKLNKTSHEDELRRAED-YLSSINGLEKS 304
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 2/133 (1%)
Query: 162 NEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAA 221
+ +++ A + + + + + + QQY A + + + GN + A
Sbjct: 68 SFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-WLAQV 126
Query: 222 YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281
Y YA A K + + + Y ++ A+ +
Sbjct: 127 YCCTGDYARAKCLLTKEDLYNRSSACRY-LAAFCLVKLYDWQGALNLLGETNPFRKDEKN 185
Query: 282 AVKENIRMAEQKL 294
A K ++ KL
Sbjct: 186 ANKLLMQDGGIKL 198
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 7e-20
Identities = 25/144 (17%), Positives = 60/144 (41%), Gaps = 16/144 (11%)
Query: 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN 210
A R+ +I+ L +F G +Y A++ ++ A+++ N
Sbjct: 205 LAAVRLDPTSID------PDVQC--GLGVLFNLSG-------EYDKAVDCFTAALSVRPN 249
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270
+ + ++ A +Q EAV +++++ P Y ++ LG++ G + +A+E F
Sbjct: 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH-F 308
Query: 271 KKALQLDPNNEAVKENIRMAEQKL 294
+AL + + + + +
Sbjct: 309 LEALNMQRKSRGPRGEGGAMSENI 332
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 1e-18
Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 1/108 (0%)
Query: 184 QGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243
+G R +Q +A+ L+ A+ + + + Q A+ + +++ P
Sbjct: 70 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129
Query: 244 NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291
+ A L +++ + A E + L+ P +
Sbjct: 130 DNQTALMALAVSFTNESLQRQACE-ILRDWLRYTPAYAHLVTPAEEGA 176
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 5e-16
Identities = 25/130 (19%), Positives = 37/130 (28%), Gaps = 7/130 (5%)
Query: 157 FHDAINEMEKSGAHAYN-QKNLAEIFKCQGNRVMQSQQYSD-AIELYSFAIALCGNN--- 211
F A + +E Q L E+ K Y D Y N
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62
Query: 212 -AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270
Q AV ++ DP + +A+ LG AI
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISA-L 121
Query: 271 KKALQLDPNN 280
++ L+L P+N
Sbjct: 122 RRCLELKPDN 131
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 1e-14
Identities = 20/145 (13%), Positives = 38/145 (26%), Gaps = 31/145 (21%)
Query: 157 FHDAINEMEK------SGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN 210
+A+ E A+ L Q AI + L +
Sbjct: 80 LPNAVLLFEAAVQQDPKHMEAWQ--YLGTTQAENE-------QELLAISALRRCLELKPD 130
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGL---------------A 255
N A ++T +A + P Y+ + +
Sbjct: 131 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190
Query: 256 YYAQGNYNDAIEKGFKKALQLDPNN 280
+ + + E F A++LDP +
Sbjct: 191 LLSDSLFLEVKEL-FLAAVRLDPTS 214
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 6e-13
Identities = 21/129 (16%), Positives = 36/129 (27%), Gaps = 27/129 (20%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI--- 225
A LA F + A E+ + A +
Sbjct: 132 QTALM--ALAVSFTNES-------LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 182
Query: 226 ------------HQYAEAVRDCLKSIDIDPNYSKA--YSRLGLAYYAQGNYNDAIEKGFK 271
+ E L ++ +DP LG+ + G Y+ A++ F
Sbjct: 183 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD-CFT 241
Query: 272 KALQLDPNN 280
AL + PN+
Sbjct: 242 AALSVRPND 250
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 21/117 (17%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
+N L Q +A+ Y A+ L N + + +
Sbjct: 251 YLLWN--KLGATLANGN-------QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 301
Query: 229 AEAVRDCLKSIDIDPNY-----------SKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274
EAV L+++++ +S L LA G + + L
Sbjct: 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG-AADARDL 357
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 1e-19
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 12/114 (10%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
Y + G + Y+++I+L+ AI L + Y+ + A + +Y
Sbjct: 6 PEEYYLE---------GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERY 56
Query: 229 AEAVRDCLKSIDIDPNY--SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
EAV I++ + ++ A E + +L+ ++
Sbjct: 57 EEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEI-AEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 73.6 bits (182), Expect = 2e-16
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 210 NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269
N Y Y E++ K+I +DP SK + G A Y Y +A++
Sbjct: 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC- 62
Query: 270 FKKALQLDPNNE 281
+ + + +
Sbjct: 63 YNYVINVIEDEY 74
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 6e-08
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 241 IDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+ + Y G+ Y GNY ++I+ F+KA+QLDP
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDL-FEKAIQLDPEE 39
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 1e-19
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 184 QGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243
+G + + A++ +S ++ N YT + EA + +SI+ D
Sbjct: 12 EGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68
Query: 244 NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL 294
+ + AY + G+ YY Y+ AI K K+AL N+ + I + KL
Sbjct: 69 HLAVAYFQRGMLYYQTEKYDLAI-KDLKEALIQLRGNQLIDYKILGLQFKL 118
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 3e-17
Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 29/144 (20%)
Query: 157 FHDAINEMEK---SGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAV 213
+ A++ + N+ ++ N ++A + ++ +I + AV
Sbjct: 22 WKGALDAFSAVQDPHSRICF--NIGCMYTILKN-------MTEAEKAFTRSINRDKHLAV 72
Query: 214 YYSNRAAAYTQIHQYAEAVRDCLKSI-DIDPNYSKAYSRL---------------GLAYY 257
Y R Y Q +Y A++D +++ + N Y L Y
Sbjct: 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA 132
Query: 258 AQGNYNDAIEKGFKKALQLDPNNE 281
+ + A E+ A +
Sbjct: 133 KKEEWKKAEEQ-LALATSMKSEPR 155
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 1e-12
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270
A+ N + A+ + +S+ +G Y N +A + F
Sbjct: 5 EAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKA-F 60
Query: 271 KKALQLDPNN 280
+++ D +
Sbjct: 61 TRSINRDKHL 70
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 18/146 (12%), Positives = 37/146 (25%), Gaps = 41/146 (28%)
Query: 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN 210
D A + +A+ ++ + Y L FK
Sbjct: 88 DLAIKDLKEALIQLRGNQLIDYK--ILGLQFKLFA------------------------- 120
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270
N A Y + ++ +A + + + A+E
Sbjct: 121 -CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PRHSKIDKAMEC-V 166
Query: 271 KKALQLDPNNEAVKENIRMAEQKLRE 296
K +P V R E+++ +
Sbjct: 167 WKQKLYEPVVIPVGRLFRPNERQVAQ 192
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 5e-19
Identities = 23/151 (15%), Positives = 43/151 (28%), Gaps = 11/151 (7%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
+ A+ A+ LA+ G + +AL
Sbjct: 4 DGPRELLQLRAAV-RHRPQDFVAWL--MLADAELGMG-------DTTAGEMAVQRGLALH 53
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
+ + ++AEA ++ D P + LG A G A
Sbjct: 54 PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAA 113
Query: 269 GFKKALQLDPNNEAVKENIRMAEQKLREERQ 299
+ +A QL P + + ++L + R
Sbjct: 114 -YTRAHQLLPEEPYITAQLLNWRRRLCDWRA 143
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 3e-10
Identities = 14/127 (11%), Positives = 33/127 (25%), Gaps = 3/127 (2%)
Query: 157 FHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYS 216
+++ A + + E G Q++++A L A +
Sbjct: 39 TTAGEMAVQR--GLALHPGH-PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIAL 95
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
A Q A ++ + P ++L ++ + +
Sbjct: 96 WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155
Query: 277 DPNNEAV 283
AV
Sbjct: 156 AQGVGAV 162
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 88.3 bits (219), Expect = 5e-19
Identities = 14/135 (10%), Positives = 33/135 (24%), Gaps = 11/135 (8%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
V + + A + A + + + + A L
Sbjct: 359 TVQRLLPVLCQAH-GLTPEQVVAIA--SNGGGKQALE-------TVQRLLPVLCQAHGLT 408
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
V ++ + + ++ + P A + G A + + +
Sbjct: 409 PEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSR 468
Query: 269 GFKKALQLDPNNEAV 283
AL N+ V
Sbjct: 469 -PDPALAALTNDHLV 482
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 88.3 bits (219), Expect = 5e-19
Identities = 13/148 (8%), Positives = 31/148 (20%), Gaps = 11/148 (7%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
V + + A + A + + + + A L
Sbjct: 325 TVQRLLPVLCQAH-GLTPQQVVAIA--SHDGGKQALE-------TVQRLLPVLCQAHGLT 374
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
V ++ + + ++ + P A + A +
Sbjct: 375 PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPV 434
Query: 269 GFKKALQLDPNNEAVKENIRMAEQKLRE 296
+A L P + L
Sbjct: 435 -LCQAHGLTPQQVVAIASNGGGRPALES 461
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 1e-18
Identities = 12/124 (9%), Positives = 29/124 (23%), Gaps = 4/124 (3%)
Query: 157 FHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYS 216
+ + + AH + + + + A L V +
Sbjct: 122 VQRLLPVLCQ--AHGLTPEQ-VVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIA 178
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
+ + + ++ + P A + G A + +A L
Sbjct: 179 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV-LCQAHGL 237
Query: 277 DPNN 280
P
Sbjct: 238 TPQQ 241
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 2e-18
Identities = 10/105 (9%), Positives = 23/105 (21%), Gaps = 1/105 (0%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
+ + + A L V ++ + +
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
++ + P A + G A + +A L P
Sbjct: 164 CQAHGLTPEQVVAIASNGGGKQALETVQRLLPV-LCQAHGLTPQQ 207
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 6e-18
Identities = 15/146 (10%), Positives = 33/146 (22%), Gaps = 11/146 (7%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
V + A + A + + + + A L
Sbjct: 155 TVQALLPVLCQAH-GLTPEQVVAIA--SNGGGKQALE-------TVQRLLPVLCQAHGLT 204
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
V ++ + + ++ + P A + G A +
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 264
Query: 269 GFKKALQLDPNNEAVKENIRMAEQKL 294
+A L P + +Q L
Sbjct: 265 -LCQAHGLTPQQVVAIASNSGGKQAL 289
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 9e-18
Identities = 11/119 (9%), Positives = 26/119 (21%), Gaps = 1/119 (0%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
+ + + A L V ++ + +
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 333
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL 294
++ + P A + A + +A L P + +Q L
Sbjct: 334 CQAHGLTPQQVVAIASHDGGKQALETVQRLLPV-LCQAHGLTPEQVVAIASNGGGKQAL 391
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 9e-18
Identities = 15/146 (10%), Positives = 34/146 (23%), Gaps = 11/146 (7%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
V + + A + A + + + + A L
Sbjct: 291 TVQRLLPVLCQAH-GLTPQQVVAIA--SNGGGKQALET-------VQRLLPVLCQAHGLT 340
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
V ++ + + ++ + P A + G A +
Sbjct: 341 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 400
Query: 269 GFKKALQLDPNNEAVKENIRMAEQKL 294
+A L P + +Q L
Sbjct: 401 -LCQAHGLTPEQVVAIASHDGGKQAL 425
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 2e-17
Identities = 14/146 (9%), Positives = 33/146 (22%), Gaps = 11/146 (7%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
V + + A + A + + + + A L
Sbjct: 189 TVQRLLPVLCQAH-GLTPQQVVAIA--SNGGGKQALE-------TVQRLLPVLCQAHGLT 238
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
V ++ + + ++ + P A + A +
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPV 298
Query: 269 GFKKALQLDPNNEAVKENIRMAEQKL 294
+A L P + +Q L
Sbjct: 299 -LCQAHGLTPQQVVAIASNGGGKQAL 323
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 2e-17
Identities = 13/126 (10%), Positives = 30/126 (23%), Gaps = 10/126 (7%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
A + + + + A L V ++ + +
Sbjct: 242 VVAIA--SNGGGKQALE-------TVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETV 292
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288
+ ++ + P A + G A + +A L P +
Sbjct: 293 QRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV-LCQAHGLTPQQVVAIASHD 351
Query: 289 MAEQKL 294
+Q L
Sbjct: 352 GGKQAL 357
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 6e-17
Identities = 9/105 (8%), Positives = 22/105 (20%), Gaps = 1/105 (0%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
+ + + A L V ++ + +
Sbjct: 70 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
++ + P A + A + +A L P
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPV-LCQAHGLTPEQ 173
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 7e-15
Identities = 13/112 (11%), Positives = 29/112 (25%), Gaps = 2/112 (1%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
+ L +I K +G ++ L + L V ++ +
Sbjct: 30 PLQLDTGQLLKIAK-RGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETV 88
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+ ++ + P A + A + +A L P
Sbjct: 89 QRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV-LCQAHGLTPEQ 139
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 8e-12
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 5/89 (5%)
Query: 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYT--QIHQYAEAVRDCLKSIDIDPNYSKAYSR 251
+ A EL + L + + R +H + A+ +++ P A +
Sbjct: 20 LTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTG--APLNLTPEQVVAIAS 77
Query: 252 LGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
A + +A L P
Sbjct: 78 HDGGKQALETVQRLLPV-LCQAHGLTPQQ 105
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 6e-19
Identities = 36/178 (20%), Positives = 73/178 (41%), Gaps = 18/178 (10%)
Query: 140 MPDGNDDPSQVDKASRIFH-DAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAI 198
+ +G+D S H D + + ++E K GN +SQ + AI
Sbjct: 184 LKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAI 243
Query: 199 ELYSFAI----------------ALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDID 242
+ Y+ + L N A ++ + AV CL++++ID
Sbjct: 244 KKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303
Query: 243 PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQR 300
P+ +KA R + Y+ A+ KKA ++ P ++A++ + +QK++ ++ +
Sbjct: 304 PSNTKALYRRAQGWQGLKEYDQAL-ADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 86.4 bits (213), Expect = 3e-18
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 11/146 (7%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
+++A R++ A+ E A NLA + + QG + +A+ Y AI +
Sbjct: 24 NIEEAVRLYRKAL---EVFPEFAAAHSNLASVLQQQG-------KLQEALMHYKEAIRIS 73
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
A YSN ++ A++ ++I I+P ++ A+S L + GN +AI
Sbjct: 74 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA- 132
Query: 269 GFKKALQLDPNNEAVKENIRMAEQKL 294
++ AL+L P+ N+ Q +
Sbjct: 133 SYRTALKLKPDFPDAYCNLAHCLQIV 158
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 84.5 bits (208), Expect = 1e-17
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
A + N NLA I + QG +A+ LY A+ + A +SN A+ Q +
Sbjct: 9 ADSLN--NLANIKREQG-------NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 59
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
EA+ ++I I P ++ AYS +G + A++ + +A+Q++P
Sbjct: 60 QEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQC-YTRAIQINPAF 110
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 70.6 bits (172), Expect = 3e-13
Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 11/134 (8%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
++ +A + +AI S A N+ K A++ Y+ AI +
Sbjct: 58 KLQEALMHYKEAI---RISPTFADAYSNMGNTLKEMQ-------DVQGALQCYTRAIQIN 107
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
A +SN A+ + EA+ ++ + P++ AY L ++ D E+
Sbjct: 108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167
Query: 269 GFKKALQLDPNNEA 282
KK + + +
Sbjct: 168 -MKKLVSIVADQLE 180
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 1e-11
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 206 ALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDA 265
C +A +N A + EAVR K++++ P ++ A+S L QG +A
Sbjct: 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 62
Query: 266 IEKGFKKALQLDPNNEAVKENIRMAEQKL 294
+ +K+A+++ P N+ +++
Sbjct: 63 LMH-YKEAIRISPTFADAYSNMGNTLKEM 90
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 1e-05
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 242 DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296
P ++ + + L QGN +A+ ++KAL++ P A N+ Q+ +
Sbjct: 5 CPTHADSLNNLANIKREQGNIEEAVRL-YRKALEVFPEFAAAHSNLASVLQQQGK 58
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 1e-17
Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 12/128 (9%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
AY L + +G A A+ + ++A ++ A + +
Sbjct: 37 RDAYI--QLGLGYLQRG-------NTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEP 87
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ--LDPNNEAVKEN 286
A + K++ D ++ + G Y Q Y +A ++ +A Q L P V EN
Sbjct: 88 KLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQR-LLEASQDTLYPERSRVFEN 146
Query: 287 IRMAEQKL 294
+ + ++
Sbjct: 147 LGLVSLQM 154
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 6e-17
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 11/111 (9%)
Query: 170 HAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYA 229
H ++ + + + M Q + Y Y Q
Sbjct: 5 HHHHHHSSGLVPR---GSHMGDQNPLKTDKGRD-------EARDAYIQLGLGYLQRGNTE 54
Query: 230 EAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+A K+++IDP+ + A++ L + + + A E+ ++KAL D N
Sbjct: 55 QAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEE-YRKALASDSRN 104
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 1e-14
Identities = 15/136 (11%), Positives = 40/136 (29%), Gaps = 12/136 (8%)
Query: 149 QVDKASRIFHDAINEMEKSG-AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL 207
+ ++A + +A + + + NL + + + A E + ++ L
Sbjct: 120 RYEEAYQRLLEASQDTLYPERSRVFE--NLGLVSLQMK-------KPAQAKEYFEKSLRL 170
Query: 208 CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267
N A + +Y A + +++ + + A
Sbjct: 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230
Query: 268 KGFKKALQLDPNN-EA 282
+ +L P + E
Sbjct: 231 Y-GLQLKRLYPGSLEY 245
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-11
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 210 NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269
++ ++ + H + LK+ AY +LGL Y +GN A
Sbjct: 4 SHHHHHHSSGLVPRGSHMGDQNP---LKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVP- 59
Query: 270 FKKALQLDPNNEAVKENIRMAEQKLRE 296
+KAL++DP++ + + Q E
Sbjct: 60 LRKALEIDPSSADAHAALAVVFQTEME 86
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 4e-17
Identities = 11/96 (11%), Positives = 33/96 (34%), Gaps = 1/96 (1%)
Query: 184 QGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243
+G +++ ++A + + + + + A+ + +DP
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 244 NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279
++ L +++ + N N A+ + L P
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALAS-LRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 9e-11
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
+ ++ AEA +P +A+ LGL AI A L
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAII-ALNHARML 80
Query: 277 DPNNEAVKEN 286
DP + AV
Sbjct: 81 DPKDIAVHAA 90
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 7e-08
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 157 FHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYS 216
+A E + E ++ G ++++ AI + A L + ++
Sbjct: 33 LAEAALAFEA--VCQKEPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 89
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYS 246
A ++T H A+ + P Y
Sbjct: 90 ALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 5e-17
Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 12/136 (8%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
DKA F A+ ++ A N N + NR ++++ + A+A
Sbjct: 57 VNDKAQESFRQAL-SIKPDSAEINN--NYGWFLCGRLNR------PAESMAYFDKALADP 107
Query: 209 GNNAVY--YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAI 266
Y N+ + Q+ A +S+ P + A+ L G DA
Sbjct: 108 TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD 167
Query: 267 EKGFKKALQLDPNNEA 282
FKK +A
Sbjct: 168 YY-FKKYQSRVEVLQA 182
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 6e-14
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 4/123 (3%)
Query: 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRD 234
++ I M+ Q Y A A+ N + + RA Y + +A
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64
Query: 235 CLKSIDIDPNYSKAYSRLGLAYYAQ-GNYNDAIEKGFKKALQ--LDPNNEAVKENIRMAE 291
+++ I P+ ++ + G + +++ F KAL P N +
Sbjct: 65 FRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAY-FDKALADPTYPTPYIANLNKGICS 123
Query: 292 QKL 294
K
Sbjct: 124 AKQ 126
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 3e-11
Identities = 19/132 (14%), Positives = 33/132 (25%), Gaps = 13/132 (9%)
Query: 149 QVDKASRIFHDAINEMEKSG-AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL 207
+ ++ F A+ + A N QG Q+ A ++A
Sbjct: 92 RPAESMAYFDKALADPTYPTPYIANL--NKGICSAKQG-------QFGLAEAYLKRSLAA 142
Query: 208 CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267
+ A Q +A K L L + +A
Sbjct: 143 QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADD--LLLGWKIAKALGNAQA 200
Query: 268 KGFKKALQLDPN 279
++ QL N
Sbjct: 201 A-YEYEAQLQAN 211
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 243 PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296
S ++L + Y +Y A + AL+ DP NE Q L+
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATAS-IEDALKSDPKNELAWLVRAEIYQYLKV 57
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 3e-16
Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 210 NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269
+ A + + + A+ + ++ DP+Y Y LG Y +DAI+
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT- 63
Query: 270 FKKALQLDPNNEAVKENIRMAEQKLREER 298
+ + +++ K+ + + KL+ E
Sbjct: 64 YAQGIEVAREEGTQKDLSELQDAKLKAEG 92
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-08
Identities = 10/89 (11%), Positives = 24/89 (26%), Gaps = 9/89 (10%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
LA+ S A+ L+ + + Y + Y ++ +
Sbjct: 7 PFTRY--ALAQEHLKHD-------NASRALALFEELVETDPDYVGTYYHLGKLYERLDRT 57
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257
+A+ + I++ L
Sbjct: 58 DDAIDTYAQGIEVAREEGTQKDLSELQDA 86
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-07
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 242 DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279
DP L + N + A+ F++ ++ DP+
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALAL-FEELVETDPD 39
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 4e-16
Identities = 23/162 (14%), Positives = 49/162 (30%), Gaps = 26/162 (16%)
Query: 145 DDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFA 204
D+ A AI + + LA + ++ + +L A
Sbjct: 186 DNWPPSQNAIDPLRQAI-RLNPDNQYLKV--LLALKLHKMRE---EGEEEGEGEKLVEEA 239
Query: 205 IALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN--- 261
+ + A Y + + +A+ K+++ PN + + ++G Y A+
Sbjct: 240 LEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM 299
Query: 262 ----------------YNDAIEKGFKKALQLDPNNEAVKENI 287
A+ KKA + + N V +
Sbjct: 300 NLRENGMYGKRKLLELIGHAVAH-LKKADEANDNLFRVCSIL 340
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 7e-16
Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 13/151 (8%)
Query: 150 VDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG 209
VDK + + ++ KC GN Q A + A+
Sbjct: 117 VDKVKHVCEKFSSPYRIESPELDCEEGWT-RLKCGGN------QNERAKVCFEKALEKKP 169
Query: 210 NNAVYYSNRAAAYTQIH---QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAI 266
N + S A A ++ A+ ++I ++P+ L L + +
Sbjct: 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEE 229
Query: 267 EKG---FKKALQLDPNNEAVKENIRMAEQKL 294
+G ++AL+ P V + ++
Sbjct: 230 GEGEKLVEEALEKAPGVTDVLRSAAKFYRRK 260
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 1e-15
Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 21/166 (12%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ------------YSD 196
+ DKA + A+ + + A+ + + ++ + +VM ++
Sbjct: 262 EPDKAIELLKKALEYIPNN-AYLHC--QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGH 318
Query: 197 AIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKA---YSRLG 253
A+ A N S A+ + QY EA K + + R G
Sbjct: 319 AVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYG 378
Query: 254 -LAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298
Y + AI F + ++++ + KE ++ QK+ + R
Sbjct: 379 NFQLYQMKCEDKAIHH-FIEGVKINQKSRE-KEKMKDKLQKIAKMR 422
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 4e-15
Identities = 17/181 (9%), Positives = 42/181 (23%), Gaps = 44/181 (24%)
Query: 141 PDGNDDPSQVDKASRIFHDAINEMEKSG------AHAYNQKNLAEIFKCQGNRVMQSQQY 194
+ K + A+ ++K+ + LA + QY
Sbjct: 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS--ILASLHALAD-------QY 350
Query: 195 SDAIELYSFAIALCGNNA----VYYSNRAAAYTQIHQYAEAVRDCLKSIDI--------- 241
+A + + ++ Q+ +A+ ++ + I
Sbjct: 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK 410
Query: 242 ---------------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286
+ S+A L A E ++ L+ +
Sbjct: 411 MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADED-SERGLESGSLIPSASSW 469
Query: 287 I 287
Sbjct: 470 N 470
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 2e-14
Identities = 29/164 (17%), Positives = 61/164 (37%), Gaps = 13/164 (7%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQK------NLAEIFKCQGNRVMQSQQYSDAIELY- 201
Q + A A +++ A + N A ++ G + Q Y D ++
Sbjct: 66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR-LSDVQIYVDKVKHVC 124
Query: 202 -SFAIALCGNNAVYYSNRAAAYTQIH--QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258
F+ + + Q A K+++ P + S L +A Y
Sbjct: 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYR 184
Query: 259 QGNYNDAIE--KGFKKALQLDPNNEAVKENIRMAEQKLREERQR 300
N+ + ++A++L+P+N+ +K + + K+REE +
Sbjct: 185 LDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE 228
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 2e-13
Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 29/161 (18%)
Query: 155 RIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC------ 208
++F+ + + A N LA + +G Q A+E A L
Sbjct: 37 KVFYRTEFQNREFKATMCN--LLAYLKHLKG-------QNEAALECLRKAEELIQQEHAD 87
Query: 209 ---GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYS--------RLGLAY- 256
+ V + N A Y + + ++ K + +S Y G
Sbjct: 88 QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRL 147
Query: 257 -YAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296
A F+KAL+ P N + +A +L
Sbjct: 148 KCGGNQNERAKVC-FEKALEKKPKNPEFTSGLAIASYRLDN 187
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 72.0 bits (178), Expect = 4e-16
Identities = 34/74 (45%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 210 NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269
N+A + N AY + Y EA+ K++++DPN ++A+ LG AYY QG+Y++AIE
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE-Y 65
Query: 270 FKKALQLDPNN-EA 282
++KAL+LDPNN EA
Sbjct: 66 YQKALELDPNNAEA 79
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 69.0 bits (170), Expect = 7e-15
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
A A+ NL + QG Y +AIE Y A+ L NNA + N AY + Y
Sbjct: 9 AEAWY--NLGNAYYKQG-------DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY 59
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG 260
EA+ K++++DPN ++A LG A QG
Sbjct: 60 DEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 1e-07
Identities = 23/41 (56%), Positives = 33/41 (80%), Gaps = 2/41 (4%)
Query: 241 IDP-NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+DP N ++A+ LG AYY QG+Y++AIE ++KAL+LDPNN
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEY-YQKALELDPNN 42
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 5e-16
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 185 GNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY---AEAVRDCLKSIDI 241
G + YS+++ Y A+ L G NA Y+ A A+ K++ +
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110
Query: 242 DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE---AVKENIRMAEQKLREE 297
D N A L + Q NY AIE ++K + L+ + E+I MA+ R
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIEL-WQKVMDLNSPRINRTQLVESINMAKLLQRRS 168
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 6e-10
Identities = 15/99 (15%), Positives = 34/99 (34%), Gaps = 2/99 (2%)
Query: 184 QGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243
++ Q ++ I N+ ++ Y + Y+ ++ +++ +
Sbjct: 16 PLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG 75
Query: 244 NYSKAYSRLGLAYYAQGNY--NDAIEKGFKKALQLDPNN 280
++ Y+ L Y Q + KAL LD N
Sbjct: 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-08
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
+ + ++ I +P S+ ++ LG Y Q +Y++++ +++ALQL
Sbjct: 15 DPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLL-AYRQALQL 73
Query: 277 DPNNEAVKENIRMA 290
N + +
Sbjct: 74 RGENAELYAALATV 87
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 1e-15
Identities = 18/144 (12%), Positives = 45/144 (31%), Gaps = 8/144 (5%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
++D A + ++ E Q A + G + DA ++ C
Sbjct: 145 RLDLARKELKKMQDQDED---ATLTQLATAWVSLAAGGE-----KLQDAYYIFQEMADKC 196
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
+ + +AA + ++ A +++D D + + L + G + +
Sbjct: 197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR 256
Query: 269 GFKKALQLDPNNEAVKENIRMAEQ 292
+ ++ +KE
Sbjct: 257 YLSQLKDAHRSHPFIKEYRAKEND 280
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 3e-15
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 4/96 (4%)
Query: 193 QYSDAIELYSFAIALCGNNAVY---YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAY 249
+ A+ Y AIA Y + + + +Y +A + PN+
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 250 SRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKE 285
+ Y G Y +E K + ++E ++
Sbjct: 65 VFYAMVLYNLGRYEQGVEL-LLKIIAETSDDETIQS 99
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-09
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 227 QYAEAVRDCLKSIDI---DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAV 283
A+AV K+I + ++ Y LG + G Y A ++ PN++A+
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAV-LANGVKQFPNHQAL 63
Query: 284 KENIRMA 290
+ M
Sbjct: 64 RVFYAMV 70
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 7e-09
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 12/102 (11%)
Query: 160 AINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRA 219
A K A Y L F+ G +Y A + + + N+ A
Sbjct: 18 ASGLQGKDLAECYL--GLGSTFRTLG-------EYRKAEAVLANGVKQFPNHQALRVFYA 68
Query: 220 AAYTQIHQYAEAVRDCLKSIDIDPNYS--KAYSRLGLAYYAQ 259
+ +Y + V LK I + ++Y + + +YA
Sbjct: 69 MVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ-AILFYAD 109
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 3e-15
Identities = 24/142 (16%), Positives = 56/142 (39%), Gaps = 6/142 (4%)
Query: 144 NDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSF 203
+ D +++AS + + + + +A +K L +I + + +Q +
Sbjct: 209 HGDDKSLNRASELLGEIV-QSSPEFTYARAEKALVDIVR-HSQHPLDEKQLAALNTEIDN 266
Query: 204 AIAL--CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN 261
+ L N ++ Y +A + + E+ + ID++ ++ Y LG Y +G
Sbjct: 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGM 325
Query: 262 YNDAIEKGFKKALQLDPNNEAV 283
+A + + A L P +
Sbjct: 326 NREAADA-YLTAFNLRPGANTL 346
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 1e-05
Identities = 13/124 (10%), Positives = 33/124 (26%), Gaps = 9/124 (7%)
Query: 136 YFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYS 195
D Q+ + + + + + + + A +G
Sbjct: 243 DIVRHSQHPLDEKQLAALNTEIDNIV-TLPELNNLSIIYQIKAVSALVKGK-------TD 294
Query: 196 DAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255
++ + + I L + + Y Y EA L + ++ P + Y
Sbjct: 295 ESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGI 353
Query: 256 YYAQ 259
+
Sbjct: 354 FQTS 357
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 75.4 bits (185), Expect = 6e-15
Identities = 31/225 (13%), Positives = 67/225 (29%), Gaps = 32/225 (14%)
Query: 70 NSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPDSTGVSKDELFGQFFA 129
+ S L + + S + Q M + S + E + +
Sbjct: 6 HHHHHSSGLVPRGSHMASMTGGQQM-GRGSMMADEEEEA------------KHVLQKLQG 52
Query: 130 ALEKFHYFRTMPDGNDDPSQV-DKASRI---FHDAINEMEKSGAHAYNQKNLAEIFKCQG 185
+++ + FR K + + +ME+ Q A+ +G
Sbjct: 53 LVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEE--VLGSAQVE-AQALMLKG 109
Query: 186 NRVMQSQQYS-DAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN 244
+ + YS +A L S A+ L ++ Y + A ++ N
Sbjct: 110 KALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN 169
Query: 245 YSKAYSRLGLAYYAQG---------NYNDAIEKGFKKALQLDPNN 280
+ L + + D++ + K A+Q+D +
Sbjct: 170 K-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ-AKLAVQMDVLD 212
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 4e-14
Identities = 24/161 (14%), Positives = 51/161 (31%), Gaps = 18/161 (11%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQG--NRVMQSQQYSDAIELYSFAIA 206
V A F A+ + NL+ + + + S+ D++ A+
Sbjct: 152 DVTSAHTCFSGALTH--CKNKVSLQ--NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ 207
Query: 207 LCGNNAVYYSNRAAAYTQIH-----------QYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255
+ + + AY ++ Q A K + +
Sbjct: 208 MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATL 267
Query: 256 YYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296
+ + +Y +A+E GF +A LDP ++ + + L
Sbjct: 268 HKYEESYGEALE-GFSQAAALDPAWPEPQQREQQLLEFLSR 307
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 3e-13
Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 27/153 (17%)
Query: 144 NDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSF 203
N P +A + A+ ++E A+N L E++ +G + A +S
Sbjct: 113 NVTPDYSPEAEVLLSKAV-KLEPELVEAWN--QLGEVYWKKG-------DVTSAHTCFSG 162
Query: 204 AIALCGNNAVYYS--------NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255
A+ C N + + ++VR ++ +D +++ LG A
Sbjct: 163 ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA 222
Query: 256 YYA--------QGNYNDAIEKGFKKALQLDPNN 280
Y + A+ + +A ++D
Sbjct: 223 YLSLYFNTGQNPKISQQALSA-YAQAEKVDRKA 254
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 6e-13
Identities = 23/128 (17%), Positives = 39/128 (30%), Gaps = 1/128 (0%)
Query: 142 DGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKN-LAEIFKCQGNRVMQSQQYSDAIEL 200
G++ V + R A+ G Y N ++ G SQQ A
Sbjct: 187 SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ 246
Query: 201 YSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG 260
+N + NRA + Y EA+ ++ +DP + + R
Sbjct: 247 AEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS 306
Query: 261 NYNDAIEK 268
+E
Sbjct: 307 RLTSLLES 314
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 5e-11
Identities = 21/151 (13%), Positives = 51/151 (33%), Gaps = 8/151 (5%)
Query: 153 ASRIFHDAINEMEKSGAHAYNQKN------LAEIFKCQGNRVMQSQQYSDAIE-LYSFAI 205
+S H + + G+H + + + + Q+ ++ LY F
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRD 62
Query: 206 ALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDA 265
+ ++V + R Q + + ++ + + ++A G A +Y+
Sbjct: 63 SYFETHSVEDAGRKQQDVQ-EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPE 121
Query: 266 IEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296
E KA++L+P + K +
Sbjct: 122 AEVLLSKAVKLEPELVEAWNQLGEVYWKKGD 152
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 25/149 (16%), Positives = 44/149 (29%), Gaps = 14/149 (9%)
Query: 136 YFRTMPDGNDDPSQVDKASRIFHDAI--NEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ 193
Y + +P +A + A + S + N A + K +
Sbjct: 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHL--NRATLHKYEE-------S 273
Query: 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP-NYSKAYSRL 252
Y +A+E +S A AL + + + K+ + +
Sbjct: 274 YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPA 333
Query: 253 GLAYYAQGNYNDAIEKGFKKALQLDPNNE 281
L G Y A G K L+L P +
Sbjct: 334 HLGPCGDGRYQSA--SGQKMTLELKPLST 360
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 4e-14
Identities = 14/126 (11%), Positives = 32/126 (25%), Gaps = 2/126 (1%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
AH + + + A L + V ++ +
Sbjct: 218 AHGLTPAQ-VVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETV 276
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288
+ ++ + P+ A + G A + +A L P+ +
Sbjct: 277 QRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLP-VLCQAHGLTPDQVVAIASHD 335
Query: 289 MAEQKL 294
+Q L
Sbjct: 336 GGKQAL 341
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 9e-14
Identities = 9/96 (9%), Positives = 25/96 (26%), Gaps = 1/96 (1%)
Query: 185 GNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN 244
+ + + A L + V ++ + + ++ + P+
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPD 326
Query: 245 YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
A + A + +A L P+
Sbjct: 327 QVVAIASHDGGKQALETVQRLLP-VLCQAHGLTPDQ 361
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 9e-14
Identities = 11/105 (10%), Positives = 28/105 (26%), Gaps = 1/105 (0%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
+ G + + + A L + V ++ + +
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
++ + P+ A + G A + +A L P+
Sbjct: 352 CQAHGLTPDQVVAIASNGGGKQALETVQRLLP-VLCQAHGLTPDQ 395
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 2e-13
Identities = 11/103 (10%), Positives = 28/103 (27%), Gaps = 1/103 (0%)
Query: 192 QQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSR 251
+ + + A L V ++ + + ++ + P+ A +
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIAS 265
Query: 252 LGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL 294
A + +A L P+ + +Q L
Sbjct: 266 NIGGKQALETVQRLLPV-LCQAHGLTPDQVVAIASHGGGKQAL 307
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 70.1 bits (171), Expect = 5e-13
Identities = 12/110 (10%), Positives = 28/110 (25%), Gaps = 1/110 (0%)
Query: 185 GNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN 244
G + + + A L V ++ + + ++ + P
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631
Query: 245 YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL 294
A + A + +A L P+ + +Q L
Sbjct: 632 QVVAIASHDGGKQALETVQRLLPV-LCQAHGLTPDQVVAIASNGGGKQAL 680
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 1e-12
Identities = 15/126 (11%), Positives = 32/126 (25%), Gaps = 2/126 (1%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
AH Q + I + + + A L V ++ +
Sbjct: 591 AHGLTQVQVVAIAS-NIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETV 649
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288
+ ++ + P+ A + G A + +A L +
Sbjct: 650 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV-LCQAHGLTQEQVVAIASNN 708
Query: 289 MAEQKL 294
+Q L
Sbjct: 709 GGKQAL 714
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 1e-12
Identities = 13/146 (8%), Positives = 35/146 (23%), Gaps = 11/146 (7%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
V + + A + + A + + + + A L
Sbjct: 614 TVQRLLPVLCQAH-GLTPAQVVAIA--SHDGGKQALET-------VQRLLPVLCQAHGLT 663
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
+ V ++ + + ++ + A + A +
Sbjct: 664 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLP- 722
Query: 269 GFKKALQLDPNNEAVKENIRMAEQKL 294
+A L P+ + +Q L
Sbjct: 723 VLCQAHGLTPDQVVAIASNGGGKQAL 748
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 4e-12
Identities = 12/103 (11%), Positives = 30/103 (29%), Gaps = 1/103 (0%)
Query: 192 QQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSR 251
+ + + A L + V ++ + + ++ + P+ A +
Sbjct: 477 ETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIAS 536
Query: 252 LGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL 294
G A + +A L P+ + +Q L
Sbjct: 537 NGGGKQALETVQRLLPV-LCQAHGLTPDQVVAIASNGGGKQAL 578
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 4e-12
Identities = 14/112 (12%), Positives = 31/112 (27%), Gaps = 2/112 (1%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
+ L +I K G M+ ++ L + L V ++ +
Sbjct: 150 PLQLDTGQLVKIAKRGGVTAME-AVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETV 208
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+ ++ + P A + A + +A L P+
Sbjct: 209 QRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLP-VLCQAHGLPPDQ 259
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 1e-11
Identities = 9/109 (8%), Positives = 24/109 (22%), Gaps = 1/109 (0%)
Query: 174 QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVR 233
+ + + A L + V ++ + +
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552
Query: 234 DCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282
++ + P+ A + G A + +A L
Sbjct: 553 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP-VLCQAHGLTQVQVV 600
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 1e-11
Identities = 11/119 (9%), Positives = 28/119 (23%), Gaps = 1/119 (0%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
+ G + + + A L + V ++ + +
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL 294
++ + A + A + +A L P + +Q L
Sbjct: 589 CQAHGLTQVQVVAIASNIGGKQALETVQRLLPV-LCQAHGLTPAQVVAIASHDGGKQAL 646
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 6e-11
Identities = 9/105 (8%), Positives = 25/105 (23%), Gaps = 2/105 (1%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
+ G + + + A L + V ++ + +
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVL 418
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
++ + P+ A + A + + L P
Sbjct: 419 CQAHGLTPDQVVAIASHDGGKQALETVQRLLPV-LCQTHGLTPAQ 462
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 4e-10
Identities = 13/119 (10%), Positives = 30/119 (25%), Gaps = 1/119 (0%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
+ G + + + A L V ++ + +
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVL 724
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL 294
++ + P+ A + G A + +A L P + +Q L
Sbjct: 725 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPV-LCQAHGLTPAQVVAIASNIGGKQAL 782
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 4e-10
Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 2/110 (1%)
Query: 185 GNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN 244
+ + + A L + V ++ + + ++ + P+
Sbjct: 335 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 394
Query: 245 YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL 294
A + G A + +A L P+ + +Q L
Sbjct: 395 QVVAIASNG-GKQALETVQRLLPV-LCQAHGLTPDQVVAIASHDGGKQAL 442
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 1e-09
Identities = 35/267 (13%), Positives = 67/267 (25%), Gaps = 34/267 (12%)
Query: 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQN 93
LE ++ L + L PD ++ I + AL P A
Sbjct: 306 ALETVQRLLPVLCQAHGL---------TPDQVVAIASHDGGKQALETVQRLLPVLCQAHG 356
Query: 94 MDAKFSEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDK- 152
+ A S G G E + L + H P QV
Sbjct: 357 LTPDQVVAIASNG---------GGKQALETVQRLLPVLCQAHGL--------TPDQVVAI 399
Query: 153 ASRIFHDAINEMEKSGAHAYNQK-----NLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL 207
AS A+ +++ Q + + + + L
Sbjct: 400 ASNGGKQALETVQRLLP-VLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGL 458
Query: 208 CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267
V ++ + + + ++ + P+ A + A +
Sbjct: 459 TPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLP 518
Query: 268 KGFKKALQLDPNNEAVKENIRMAEQKL 294
+A L P+ + +Q L
Sbjct: 519 -VLCQAHGLTPDQVVAIASNGGGKQAL 544
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 6e-08
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 5/111 (4%)
Query: 172 YNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR--AAAYTQIHQYA 229
+++ + K +DA EL + L V + R A +H
Sbjct: 118 ATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASR 177
Query: 230 EAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
A+ +++ P A + A + +A L P
Sbjct: 178 NALTG--APLNLTPAQVVAIASNNGGKQALETVQRLLPV-LCQAHGLTPAQ 225
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 7e-08
Identities = 11/146 (7%), Positives = 31/146 (21%), Gaps = 11/146 (7%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
V + + A + + + + + A L
Sbjct: 682 TVQRLLPVLCQAH---GLTQEQVVAIASNNGGKQALE-------TVQRLLPVLCQAHGLT 731
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
+ V ++ + + ++ + P A + A +
Sbjct: 732 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPV 791
Query: 269 GFKKALQLDPNNEAVKENIRMAEQKL 294
+ L + +Q L
Sbjct: 792 -LCQDHGLTLAQVVAIASNIGGKQAL 816
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 10/119 (8%), Positives = 26/119 (21%), Gaps = 1/119 (0%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
+ G + + + A L V ++ + +
Sbjct: 733 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVL 792
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL 294
+ + A + A + +A L + + +Q L
Sbjct: 793 CQDHGLTLAQVVAIASNIGGKQALETVQRLLP-VLCQAHGLTQDQVVAIASNIGGKQAL 850
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 4e-04
Identities = 9/99 (9%), Positives = 23/99 (23%), Gaps = 8/99 (8%)
Query: 191 SQQYSDAIELY-------SFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243
+ A+E A L + V ++ + + + + P
Sbjct: 809 NIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTP 868
Query: 244 NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282
+ A + A + + L +
Sbjct: 869 DQVVAIASNIGGKQALETVQRLLPV-LCQDHGLTLDQVV 906
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 5e-13
Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDP-NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275
A++ + + +P +AY +G AY G++ A+ ++ A++
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNN-YQSAIE 63
Query: 276 LDPNNEAVKEN 286
L+P++ A++
Sbjct: 64 LNPDSPALQAR 74
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-09
Identities = 12/90 (13%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVY-YSNRAAAYTQIHQYAEAVRDCLK 237
+ K ++ +A++ + Y AY ++ + +A+ +
Sbjct: 2 DQLK-TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60
Query: 238 SIDIDPNYSKAYSRLGL----AYYAQGNYN 263
+I+++P+ +R + +Y + YN
Sbjct: 61 AIELNPDSPALQARKMVMDILNFYNKDMYN 90
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-12
Identities = 22/155 (14%), Positives = 44/155 (28%), Gaps = 33/155 (21%)
Query: 151 DKASRIFHDAINEMEKSG-----AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAI 205
D+A F + +KSG A + + + + G + A +
Sbjct: 43 DEARASFQALQQQAQKSGDHTAEHRALH--QVGMVERMAG-------NWDAARRCFLEER 93
Query: 206 ALC---GNN----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID------PNYSKAYSRL 252
L + + A A A ++ KS+ + A+ L
Sbjct: 94 ELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL 153
Query: 253 GLAYYAQGNYNDAIEKGFKKALQL-----DPNNEA 282
G + N +A + + +A + D
Sbjct: 154 GDLAQQEKNLLEAQQH-WLRARDIFAELEDSEAVN 187
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 3e-07
Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 27/130 (20%)
Query: 151 DKASRIFHDAINEMEKSG------AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFA 204
D A R F + + + +A + G + A + Y +
Sbjct: 83 DAARRCFLEERELLASLPEDPLAASANAY--EVATVALHFG-------DLAGARQEYEKS 133
Query: 205 IALC---GNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI------DPNYSKAYSRL 252
+ + A + Q EA + L++ DI ++ +RL
Sbjct: 134 LVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRL 193
Query: 253 GLAYYAQGNY 262
+ ++
Sbjct: 194 NGLEHHHHHH 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 13/114 (11%), Positives = 27/114 (23%), Gaps = 29/114 (25%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228
AH Y + + + Y + ++
Sbjct: 5 AHDYALAER-QAQALLAHPATA---------------------SGARFMLGYVYAFMDRF 42
Query: 229 AEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
EA +A ++G+ GN++ A F + +L
Sbjct: 43 DEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRC-FLEEREL 95
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 220 AAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL--- 276
AA+ H YA A R + S A LG Y +++A F+ Q
Sbjct: 1 AAFEA-HDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARAS-FQALQQQAQK 58
Query: 277 --DPNNEA 282
D E
Sbjct: 59 SGDHTAEH 66
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 6e-12
Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 11/135 (8%)
Query: 152 KASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN 211
+A + +++EK A + +AE + + A+++Y
Sbjct: 126 EAEKELPFVSDDIEK--AEFHF--KVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181
Query: 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGNYNDA 265
A Y Y +A+ ++++ D + + + +Y G+ A
Sbjct: 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241
Query: 266 IEKGFKKALQLDPNN 280
+E F+KA ++
Sbjct: 242 VEH-FQKAAKVSREK 255
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 4e-11
Identities = 20/136 (14%), Positives = 36/136 (26%), Gaps = 22/136 (16%)
Query: 152 KASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC--- 208
+A I+ + +A + Y A+ A+ L
Sbjct: 166 QALDIY-QNHPLYSIRTIQSLF--VIAGNYDDFK-------HYDKALPHLEAALELAMDI 215
Query: 209 GNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-----DPNYSKAYSRLGLAYYAQG 260
N+ A+ N A +Y + AV K+ + K L G
Sbjct: 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG 275
Query: 261 NYNDAIEKGFKKALQL 276
A + ++ L
Sbjct: 276 QTQKAFQF-IEEGLDH 290
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 7e-09
Identities = 17/156 (10%), Positives = 44/156 (28%), Gaps = 18/156 (11%)
Query: 149 QVDKASRIFHDA---INEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAI 205
V A + + I +ME+ + + + + + Y + +
Sbjct: 27 SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86
Query: 206 ALCGN--------NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI------DPNYSKAYSR 251
+ R +Y EA+ ++ D ++ + +
Sbjct: 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFK 146
Query: 252 LGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENI 287
+ AYY + ++ +AL + N+
Sbjct: 147 VAEAYYHMKQTHVSMYH-ILQALDIYQNHPLYSIRT 181
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 5e-08
Identities = 11/137 (8%), Positives = 28/137 (20%), Gaps = 21/137 (15%)
Query: 151 DKASRIFHDAINEMEK----SGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIA 206
A F A + L+ G A + +
Sbjct: 239 QMAVEHFQKAAKVSREKVPDLLPKVLF--GLSWTLCKAGQ-------TQKAFQFIEEGLD 289
Query: 207 LC-GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQ 259
+ +Y +++ R + + +
Sbjct: 290 HITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESS 349
Query: 260 GNYNDAIEKGFKKALQL 276
++ A ++K L+
Sbjct: 350 CHFEQAAAF-YRKVLKA 365
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 25/126 (19%)
Query: 187 RVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAAAYTQIHQYAEAVRDCLKSID 240
++++ DA L + +YYS + + Y E +
Sbjct: 21 KMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPT 80
Query: 241 ID-------------PNYSKAYS--RLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKE 285
+ K YS G+ + Q Y +AI +++A + V +
Sbjct: 81 VTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGY-YREAEKE---LPFVSD 136
Query: 286 NIRMAE 291
+I AE
Sbjct: 137 DIEKAE 142
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 21/139 (15%)
Query: 151 DKASRIFHDAINEMEKSGAH---AYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL 207
+ + S E G+ + + AI
Sbjct: 25 GGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGD-------CRAGVAFFQAAIQA 77
Query: 208 CGNN----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI------DPNYSKAYSRLGLAYY 257
+ + YS AY + Y +A++ + + +K+ LG
Sbjct: 78 GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK 137
Query: 258 AQGNYNDAIEKGFKKALQL 276
G +++A ++ L L
Sbjct: 138 VMGRFDEAAIC-CERHLTL 155
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 22/120 (18%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC---GNN---AVYYSNRAAAY 222
A + NL G Q+ DA E Y +AL G A + Y
Sbjct: 263 RRANS--NLGNSHIFLG-------QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY 313
Query: 223 TQIHQYAEAVRDCLKSIDID------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
T +H++ A+ + + I ++A LG A+ A G + A++ ++ LQL
Sbjct: 314 TLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY-AEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 30/153 (19%)
Query: 151 DKASRIFHDAINEMEKSG-----AHAYNQKNLAEIFKCQGN----------RVMQSQQYS 195
D+A+ + + G A NL ++ +G + +
Sbjct: 143 DEAAICCERHLTLARQLGDRLSEGRALY--NLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200
Query: 196 DAIELYSFAIALC---GNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI------DP 243
A+E Y + L G+ N Y + + A+ + + I
Sbjct: 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260
Query: 244 NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
+A S LG ++ G + DA E +K+ L L
Sbjct: 261 AERRANSNLGNSHIFLGQFEDAAEH-YKRTLAL 292
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 5e-10
Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 11/94 (11%)
Query: 193 QYSDAIELYSFAIALCGNN------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI----D 242
+ + + + V +I
Sbjct: 23 SGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL 82
Query: 243 PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
S YS+LG AY+ G+YN A++ K L L
Sbjct: 83 RTLSAIYSQLGNAYFYLGDYNKAMQY-HKHDLTL 115
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 24/139 (17%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELY--SFAIALCGNN----AVYYSNRAAAY 222
+ Y+ L + G Y+ A++ + +A N+ A N
Sbjct: 86 SAIYS--QLGNAYFYLG-------DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTL 136
Query: 223 TQIHQYAEAVRDCLKSIDID------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
+ ++ EA C + + + + +A LG Y+A+G + G
Sbjct: 137 KVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK 196
Query: 277 DPNNEAV---KENIRMAEQ 292
+ AV +EN+++
Sbjct: 197 EALTRAVEFYQENLKLMRD 215
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 9e-09
Identities = 21/137 (15%), Positives = 37/137 (27%), Gaps = 39/137 (28%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC---GNN---AVYYSNRAAAY 222
A + NL K G + +A + L G+ N Y
Sbjct: 126 AKSSG--NLGNTLKVMGR-------FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176
Query: 223 TQIHQYAEAVRDCLKSIDIDPNYSKA-----------------------YSRLGLAYYAQ 259
++ D+ ++A LG YY
Sbjct: 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL 236
Query: 260 GNYNDAIEKGFKKALQL 276
G++ AIE ++ L++
Sbjct: 237 GDFQAAIEH-HQERLRI 252
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-11
Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 22/120 (18%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELY--SFAIALCGNN----AVYYSNRAAAY 222
AY+ NL + G ++ A E Y + +A + A + Y
Sbjct: 49 RIAYS--NLGNAYIFLG-------EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 99
Query: 223 TQIHQYAEAVRDCLKSIDID------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
T + Y +A+ LK + I +A LG AY A GN++ A+ +K L++
Sbjct: 100 TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF-AEKHLEI 158
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGNYNDA 265
+ N + + + +AV + + I AYS LG AY G + A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 266 IEKGFKKALQL 276
E +KK L L
Sbjct: 69 SEY-YKKTLLL 78
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 2e-11
Identities = 23/137 (16%), Positives = 41/137 (29%), Gaps = 23/137 (16%)
Query: 152 KASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC--- 208
+A I+ ++ A F QY DAI + A ++
Sbjct: 168 QAYEIY-KEHEAYNIRLLQCHS--LFATNFLDLK-------QYEDAISHFQKAYSMAEAE 217
Query: 209 GNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID------PNYSKAYSRLGLAYYAQ 259
N QY +A+ ++I + P+ +AY + +Y
Sbjct: 218 KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKL 277
Query: 260 GNYNDAIEKGFKKALQL 276
G + A E K +
Sbjct: 278 GKIDKAHEY-HSKGMAY 293
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 2e-09
Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 21/121 (17%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC---GNN---AVYYSNRAAAY 222
Y Q Y AI+ + A + + A ++ + +Y
Sbjct: 101 LEYYFNFFRGMYELDQRE-------YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESY 153
Query: 223 TQIHQYAEAVRDCLKSIDI-------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275
+ Q ++ ++ +I + + +S + Y DAI F+KA
Sbjct: 154 YYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISH-FQKAYS 212
Query: 276 L 276
+
Sbjct: 213 M 213
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 6e-08
Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 20/158 (12%)
Query: 149 QVDKASRIFHDA---INEMEK--------SGAHAYNQKNLAEIFKCQGNRVMQSQQYSDA 197
+ A + + +++ME+ S + L + + R+ + + SD
Sbjct: 27 SIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDL 86
Query: 198 IELYSFAIALCGNNAVYYSN--RAAAYTQIHQYAEAVRDCLKSIDI------DPNYSKAY 249
+ A YY N R +Y A++ K+ ++ +
Sbjct: 87 LLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFF 146
Query: 250 SRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENI 287
++ +YY +++ ++A ++ +EA +
Sbjct: 147 FKMSESYYYMKQTYFSMDY-ARQAYEIYKEHEAYNIRL 183
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 24/139 (17%), Positives = 44/139 (31%), Gaps = 24/139 (17%)
Query: 151 DKASRIFHDAINEMEKSG-----AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELY--SF 203
+ A F AI E+S AY + +I G A E +
Sbjct: 241 EDAIPYFKRAIAVFEESNILPSLPQAYF--LITQIHYKLGK-------IDKAHEYHSKGM 291
Query: 204 AIALCGNNAVY---YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS---KAYSRLGLAYY 257
A + + +Y + + Y EA++ ++ Y+ + Y+
Sbjct: 292 AYSQKAGDVIYLSEFEFLKSLYLS-GPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350
Query: 258 AQGNYNDAIEKGFKKALQL 276
+ N+ A F K Q+
Sbjct: 351 ERKNFQKASAY-FLKVEQV 368
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 25/128 (19%), Positives = 36/128 (28%), Gaps = 27/128 (21%)
Query: 187 RVMQSQQYSDAIELYSFAIALCG------NNAVYYSNRAAAYTQIHQY-----------A 229
++ DA L + +YYS + + +Y
Sbjct: 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQ 80
Query: 230 EAVRDCLKSIDIDPNYSK------AYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAV 283
+ D L ID G+ Q Y AI+ FKKA V
Sbjct: 81 PRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKF-FKKAESK---LIFV 136
Query: 284 KENIRMAE 291
K+ I AE
Sbjct: 137 KDRIEKAE 144
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 60.9 bits (147), Expect = 2e-11
Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 22/120 (18%)
Query: 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY----------AEAVRDCLKSIDIDP 243
+ + +A + ++ Q+ EA+ +++ IDP
Sbjct: 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77
Query: 244 NYSKAYSRLGLAYYAQG-----------NYNDAIEKGFKKALQLDPNNEAVKENIRMAEQ 292
+A +G AY + N++ A + F++A+ P+N +++ M +
Sbjct: 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQF-FQQAVDEQPDNTHYLKSLEMTAK 136
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 3e-11
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 20/118 (16%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----AVYYSNRAAAYTQ 224
E G+ + + A+ + + + YS AY
Sbjct: 5 CLELA--LEGERLCKSGD-------CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY 55
Query: 225 IHQYAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
+H YA+A+ + + +KA LG GN+++AI ++ L +
Sbjct: 56 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC-CQRHLDI 112
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 6e-11
Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 22/120 (18%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELY--SFAIALCGNN----AVYYSNRAAAY 222
AY+ NL + G ++ A E Y + +A + A + Y
Sbjct: 223 RRAYS--NLGNAYIFLG-------EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 273
Query: 223 TQIHQYAEAVRDCLKSIDID------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
T + Y +A+ LK + I +A LG AY A GN++ A+ +K L++
Sbjct: 274 TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF-AEKHLEI 332
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 8e-10
Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 28/133 (21%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQS-------------QQYSDAIELY--SFAIALCGNN-- 211
A A NL ++ +G A++LY + ++ +
Sbjct: 123 ARALY--NLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRA 180
Query: 212 --AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGNYN 263
+ N + + + +AV + + I +AYS LG AY G +
Sbjct: 181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240
Query: 264 DAIEKGFKKALQL 276
A E +KK L L
Sbjct: 241 TASEY-YKKTLLL 252
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 21/125 (16%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC---GNN---AVYYSNRAAAY 222
+ Y+ L + + Y+ A+E + + L G+ A N
Sbjct: 43 SAIYS--QLGNAYFYLHD-------YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93
Query: 223 TQIHQYAEAVRDCLKSIDID------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
+ + EA+ C + +DI ++A LG Y+A+G
Sbjct: 94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE 153
Query: 277 DPNNE 281
D N
Sbjct: 154 DVRNA 158
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 3e-11
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 20/118 (16%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----AVYYSNRAAAYTQ 224
E G+ + + A+ + + + YS AY
Sbjct: 9 CLELA--LEGERLCKSGD-------CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY 59
Query: 225 IHQYAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
+H YA+A+ + + +KA LG GN+++AI ++ L +
Sbjct: 60 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC-CQRHLDI 116
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 5e-11
Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 22/120 (18%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELY--SFAIALCGNN----AVYYSNRAAAY 222
AY+ NL + G ++ A E Y + +A + A + Y
Sbjct: 227 RRAYS--NLGNAYIFLG-------EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 277
Query: 223 TQIHQYAEAVRDCLKSIDID------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
T + Y +A+ LK + I +A LG AY A GN++ A+ +K L++
Sbjct: 278 TLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF-AEKHLEI 336
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 25/133 (18%), Positives = 44/133 (33%), Gaps = 28/133 (21%)
Query: 169 AHAYNQKNLAEIFKCQGNRVM-------------QSQQYSDAIELY--SFAIALCGNN-- 211
A A NL ++ +G A++ Y + ++ +
Sbjct: 127 ARALY--NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRA 184
Query: 212 --AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGNYN 263
+ N + + + +AV + + I +AYS LG AY G +
Sbjct: 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244
Query: 264 DAIEKGFKKALQL 276
A E +KK L L
Sbjct: 245 TASEY-YKKTLLL 256
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 21/125 (16%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC---GNN---AVYYSNRAAAY 222
+ Y+ L + + Y+ A+E + + L G+ A N
Sbjct: 47 SAIYS--QLGNAYFYLHD-------YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97
Query: 223 TQIHQYAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
+ + EA+ C + +DI ++A LG Y+A+G
Sbjct: 98 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE 157
Query: 277 DPNNE 281
+ +
Sbjct: 158 EVRDA 162
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 29/126 (23%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELY--SFAIALCGNN----AVYYSNRAAAY 222
A + +L + Y AI+ + AIA N+ + AY
Sbjct: 267 AQSCY--SLGNTYTLLQ-------DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAY 317
Query: 223 TQIHQYAEAVRDCLKSIDID-------------PNYSKAYSRLGLAYYAQGNYNDAIEKG 269
T + + +A+ K ++I N S LGL+Y + +
Sbjct: 318 TALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTE- 376
Query: 270 FKKALQ 275
+L
Sbjct: 377 IDSSLN 382
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 5e-11
Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 31/161 (19%)
Query: 165 EKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC------------GNNA 212
K AY + R + + +Y +A A+ + G +A
Sbjct: 5 LKEVVGAYLALS-------DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDA 57
Query: 213 VYYSNRAAAYTQIHQYAEAVRDCLKSI-------DIDPNYSKAYS----RLGLAYYAQGN 261
++ A A + + EA+ K++ +++ + K + LA G
Sbjct: 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR 117
Query: 262 YNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTG 302
+A+ FKK +++ + + + + G
Sbjct: 118 GAEAM-PEFKKVVEMIEERKGETPGKERMMEVAIDRIAQLG 157
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 1e-10
Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 26/123 (21%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELY--SFAI--ALCGNN----AVYYSNRAA 220
A N NLA ++ +G +Y +A L + I + G + A +N A
Sbjct: 111 AATLN--NLAVLYGKRG-------KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161
Query: 221 AYTQIHQYAEAVRDCLKSIDI--------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKK 272
+Y E ++++I DPN +K + L Y QG + A +K+
Sbjct: 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETL-YKE 220
Query: 273 ALQ 275
L
Sbjct: 221 ILT 223
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 5e-08
Identities = 19/123 (15%), Positives = 33/123 (26%), Gaps = 25/123 (20%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-----GNN----AVYYSNRA 219
A N NLA + QG ++ A LY + G+ + +
Sbjct: 195 AKTKN--NLASCYLKQG-------KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAE 245
Query: 220 AAYTQIHQYAEAVRDCLKSIDID------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKA 273
+ + P + LG Y QG + A + A
Sbjct: 246 EREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL-EEAA 304
Query: 274 LQL 276
++
Sbjct: 305 MRS 307
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI--------DPNYSKAYSRLGLAYYAQGNYN 263
N Y +Y AV C ++++ P+ + + L L Y Q Y
Sbjct: 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86
Query: 264 DAIEKGFKKALQL 276
DA AL +
Sbjct: 87 DAANL-LNDALAI 98
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 2e-10
Identities = 8/89 (8%), Positives = 28/89 (31%), Gaps = 1/89 (1%)
Query: 192 QQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSR 251
+ + + + I N + +R + ++ + ++ D A+
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205
Query: 252 LGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+++ ++ + L+ D N
Sbjct: 206 RQWVIQEFKLWDNELQY-VDQLLKEDVRN 233
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 4e-10
Identities = 17/134 (12%), Positives = 47/134 (35%), Gaps = 8/134 (5%)
Query: 155 RIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVY 214
+ H+ +N + KN +++ + V + S +E + + N
Sbjct: 146 KDLHEEMNYITA--IIEEQPKN-YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202
Query: 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE-----KG 269
+ +R + + ++ + + D + +++ YND +
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262
Query: 270 FKKALQLDPNNEAV 283
+ ++L P+NE+
Sbjct: 263 TLEMIKLVPHNESA 276
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 2e-10
Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 24/147 (16%)
Query: 146 DPSQVDKASRIFHDAINEMEKSGAH---AYNQKNLAEIFKCQGNRVMQSQQYSDAIELYS 202
D ++ +A + A ++G A ++ + S A+ LY
Sbjct: 88 DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM--------EPLDLSKAVHLYQ 139
Query: 203 FAIALCGNN------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID------PNYSKAYS 250
A A+ N A + + ++ EA K + P K
Sbjct: 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI 199
Query: 251 RLGLAYYAQGNYNDAIEKGFKKALQLD 277
L + +Y A + +++ +
Sbjct: 200 AQVLVQLHRADYVAAQKC-VRESYSIP 225
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 1e-07
Identities = 15/147 (10%), Positives = 41/147 (27%), Gaps = 26/147 (17%)
Query: 151 DKASRIFHDAINEMEKSG-----AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAI 205
++A + + A A+ + K +A++ A
Sbjct: 53 EQAKDAYLQEAEAHANNRSLFHAAKAFE--QAGMMLKDLQR-------MPEAVQYIEKAS 103
Query: 206 AL-----CGNNAVYYSNRAAAYTQIHQYAEAVR------DCLKSIDIDPNYSKAYSRLGL 254
+ + A +RA + ++AV ++ + ++ +
Sbjct: 104 VMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASR 163
Query: 255 AYYAQGNYNDAIEKGFKKALQLDPNNE 281
Q +++A +K + E
Sbjct: 164 LLVRQQKFDEAAAS-LQKEKSMYKEME 189
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 4e-06
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 18/105 (17%)
Query: 189 MQSQQYSDAIELYSFAIALCGNN-----------AVYYSNRAAAYTQIHQYAEAVRDCLK 237
+ +Q+ S+A E + A + A Y+ A A+ Q +A L+
Sbjct: 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQ 61
Query: 238 SIDIDPNYS------KAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
+ N KA+ + G+ +A++ +KA +
Sbjct: 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY-IEKASVM 105
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 2e-09
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 26/123 (21%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC----GNN----AVYYSNRAA 220
A N LA +++ Q +Y +A L + A+A+ G + A +N A
Sbjct: 43 ATMLN--ILALVYRDQN-------KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93
Query: 221 AYTQIHQYAEAVRDCLKSIDID--------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKK 272
Y + +Y EA C ++++I P+ +K + L L QG + E +++
Sbjct: 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEV-EYYYRR 152
Query: 273 ALQ 275
AL+
Sbjct: 153 ALE 155
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-09
Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 33/148 (22%)
Query: 151 DKASRIFHDAINEMEKS-G------AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSF 203
+A+ + +DA+ EK+ G A N NLA ++ +G +Y +A L
Sbjct: 60 KEAAHLLNDALAIREKTLGKDHPAVAATLN--NLAVLYGKRG-------KYKEAEPLCKR 110
Query: 204 AIALC----GNN----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI--------DPNYSK 247
A+ + G A +N A + E ++++I DPN +K
Sbjct: 111 ALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170
Query: 248 AYSRLGLAYYAQGNYNDAIEKGFKKALQ 275
+ L Y QG Y DA +K+ L
Sbjct: 171 TKNNLASCYLKQGKYQDAETL-YKEILT 197
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 8e-09
Identities = 22/122 (18%), Positives = 33/122 (27%), Gaps = 25/122 (20%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC---------GNNAVYYSNRA 219
A N NLA + QG +Y DA LY + G+N + +
Sbjct: 169 AKTKN--NLASCYLKQG-------KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAE 219
Query: 220 AAYTQIHQYAEAVRDCLKSIDID------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKA 273
+ ++ P + LG Y QG A A
Sbjct: 220 EREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL-EDCA 278
Query: 274 LQ 275
+
Sbjct: 279 SR 280
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 6e-09
Identities = 26/168 (15%), Positives = 45/168 (26%), Gaps = 21/168 (12%)
Query: 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL 207
+ +N+ + I N ++ I+L+ +
Sbjct: 129 VDYEYCILELKKLLNQQLTG----IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184
Query: 208 CGNN--------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI------DPNYSKAYSRLG 253
V Y N A A +Y E++ K+I+I + Y + G
Sbjct: 185 LEALHDNEEFDVKVRY-NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG 243
Query: 254 LAYYAQGNYNDAIEKGFKKALQL--DPNNEAVKENIRMAEQKLREERQ 299
IE +KKA A KE + +L
Sbjct: 244 ECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRLEHHHH 291
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 4e-04
Identities = 14/158 (8%), Positives = 39/158 (24%), Gaps = 18/158 (11%)
Query: 132 EKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS 191
E+ F+ + + + + + E + + V++
Sbjct: 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH----PEFQQFLQWQYYVAAYVLKK 128
Query: 192 QQYSDAIELYSFAIALCGNN------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY 245
Y I + + A Y + + + + +
Sbjct: 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188
Query: 246 S-------KAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
K A Y Y +++ + KA+++
Sbjct: 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQ-VNKAIEI 225
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 7e-06
Identities = 59/477 (12%), Positives = 125/477 (26%), Gaps = 158/477 (33%)
Query: 4 SRIQTDSPL--SRRIVRSFLHF-----LDSVEPAPGVDLEG----------LEVAR---- 42
R+ D+ + + R + L + PA V ++G L+V
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 43 ECL--TEVF-----KLDSPSA--------------DGQRKPDS--------------LID 67
+C ++F +SP + + D L
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 68 IFNSQQASDALGIKSDNAPSSSSAQNMDAK------------FSEASKSMGEDWTEEPDS 115
+ S+ + L + N ++ + + S + + + S
Sbjct: 237 LLKSKPYENCLLV-LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 116 TGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHA---- 171
++ DE+ L+ D P +V + I E + G
Sbjct: 296 MTLTPDEVKSLLLKYLDC--------RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 172 --YNQKNLAEIFK----CQGNRVMQSQQYSD-AI-------------------------- 198
N L I + + + + ++
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 199 ---ELYSFAIALCGNNAVYYS---------NRAAAYTQIH-----QYAEAVRDCLKSIDI 241
+L+ +++ S + +H Y + S D+
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY--NIPKTFDSDDL 464
Query: 242 DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRT 301
P Y Y + ++ + + F+ + LD R EQK+R T
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRM-VFLD---------FRFLEQKIR--HDST 512
Query: 302 GWDQTTSSSHYSQESNQSTGGFRSHGTP--PSFTMPFNTNALPTDIASMLMNMASNM 356
W+ + S + Q+ ++ + P + N I L + N+
Sbjct: 513 AWNASGSILNTLQQLKF----YKPYICDNDPKYERLVN------AILDFLPKIEENL 559
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 2e-05
Identities = 21/144 (14%), Positives = 41/144 (28%), Gaps = 10/144 (6%)
Query: 152 KASRIFHDAINEMEKSGAH---AYNQKNLAEIFKCQGNRVMQSQQYSDAIELY------S 202
A F A + +K+G + FK GN V +AI+++
Sbjct: 55 LAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR 114
Query: 203 FAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNY 262
N Y + E + +K + + G Y
Sbjct: 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174
Query: 263 NDAIEKGFKKALQLDPNNEAVKEN 286
+A + + K ++ N + +
Sbjct: 175 IEASDI-YSKLIKSSMGNRLSQWS 197
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Length = 93 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 2e-04
Identities = 14/87 (16%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270
+YY ++ A ++ E +++ ++P A S + ++ + +AI+ +
Sbjct: 14 TTLYYLHKQAMTDEVSLLLE------QALQLEPYNEAALSLIANDHFISFRFQEAIDT-W 66
Query: 271 KKALQLDPNN---EAVKENIRMAEQKL 294
L + N + E+I A++ +
Sbjct: 67 VLLLDSNDPNLDRVTIIESINKAKKLM 93
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 3e-04
Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 23/135 (17%)
Query: 149 QVDKASRIFHDAINEMEKSGAH---AYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAI 205
++ ++ + + ++ +EI QG A E A
Sbjct: 68 ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG-------FLQTAWETQEKAF 120
Query: 206 ALCG--------NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS-----KAYSRL 252
L + RA + EA I++ +Y + + L
Sbjct: 121 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180
Query: 253 GLAYYAQGNYNDAIE 267
A+G+ ++A
Sbjct: 181 IQCSLARGDLDNARS 195
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 433 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.94 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.93 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.92 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.91 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.91 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.91 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.91 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.91 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.9 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.9 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.9 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.88 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.88 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.87 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.87 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.87 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.87 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.86 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.86 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.86 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.86 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.86 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.85 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.85 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.84 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.84 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.84 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.84 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.82 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.82 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.82 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.82 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.82 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.81 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.81 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.81 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.81 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.81 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.81 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.8 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.8 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.8 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.79 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.79 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.79 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.79 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.79 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.79 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.78 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.77 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.75 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.75 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.75 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.74 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.74 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.74 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.74 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.74 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.73 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.72 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.72 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.72 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.72 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.71 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.71 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.71 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.71 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.7 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.7 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.7 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.7 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.7 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.7 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.7 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.7 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.69 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.69 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.69 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.68 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.68 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.68 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.67 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.67 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.67 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.67 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.66 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.66 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.66 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.66 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.65 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.64 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.64 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.64 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.64 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.64 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.63 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.62 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.62 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.62 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.62 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.61 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.61 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.61 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.61 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.6 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.59 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.59 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.58 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.58 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.58 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.58 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.58 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.57 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.57 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.56 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.56 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.56 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.55 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.54 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.53 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.52 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.52 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.51 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.51 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.51 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.5 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.5 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.49 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.49 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.49 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.49 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.48 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.48 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.48 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.48 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.47 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.47 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.47 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.46 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.46 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.46 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.45 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.45 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.45 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.42 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.41 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.41 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.4 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.39 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.38 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.37 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.36 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.35 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.34 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.34 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.33 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.31 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.31 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.31 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.3 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.27 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.27 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.26 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.25 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.24 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.24 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.22 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.2 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.19 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.15 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.08 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.07 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.05 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.05 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.99 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.98 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.97 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.95 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.92 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.91 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.76 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.71 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.69 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.68 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.66 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.65 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.62 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.58 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.58 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.53 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.5 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.44 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.27 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.01 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.9 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.87 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.82 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.8 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.77 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.67 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.51 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.48 | |
| 4gof_A | 52 | Small glutamine-rich tetratricopeptide repeat-CON | 97.34 | |
| 2lxb_A | 74 | Small glutamine-rich tetratricopeptide repeat-CON | 97.24 | |
| 4asv_A | 92 | Small glutamine-rich tetratricopeptide repeat-CON | 97.2 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.2 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.13 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.92 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.75 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.73 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.6 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 96.2 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.75 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.44 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.3 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 95.11 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.76 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.25 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 93.91 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.8 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.53 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.96 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 91.98 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.82 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 90.9 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 90.11 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.24 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.57 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 86.84 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 86.27 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.1 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 85.46 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 84.02 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.76 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-30 Score=248.18 Aligned_cols=224 Identities=17% Similarity=0.161 Sum_probs=205.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|++++.++|++..+++.+|.++...|
T Consensus 148 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 217 (388)
T 1w3b_A 148 LGRLEEAKACYLKAIETQPNF----------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 217 (388)
T ss_dssp TSCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 689999999999999998887 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|++++.++|+++.++..+|.++...|++++|+. .|+++++++|+++.++..++.++...|++++|...+..
T Consensus 218 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID-TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999998877
Q ss_pred cCC-Cccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 307 TSS-SHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 307 ~~~-~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
+.. .|.... +..+...|++++|+..| ++..+| +++.++..+| .++...|++++|+..|+++++++|
T Consensus 297 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~-~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-----EFAAAHSNLA-SVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-----TCHHHHHHHH-HHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CcHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 652 232222 56788889999999999 999999 9999999999 999999999999999999999999
Q ss_pred Cc-ccccccc
Q 013948 379 GI-RIGGNIN 387 (433)
Q Consensus 379 ~~-~~~~~~~ 387 (433)
++ ....+++
T Consensus 371 ~~~~a~~~lg 380 (388)
T 1w3b_A 371 TFADAYSNMG 380 (388)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHhHH
Confidence 98 4444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-29 Score=241.85 Aligned_cols=244 Identities=16% Similarity=0.135 Sum_probs=216.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++..+|.. ..++..+|.++...|++++|+..|.+++..+|+++.+|.++|.++...|
T Consensus 114 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 183 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPDL----------YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTC----------THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 689999999999999998887 7889999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|+++++++|+++.++..+|.++...|++++|+. .|++++.++|+++.++..++.++...|++++|...+..
T Consensus 184 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 262 (388)
T 1w3b_A 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA-AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999998887
Q ss_pred cC-CCccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 307 TS-SSHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 307 ~~-~~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
+. ..|.... +..+...|++++|+..| ++..+| +++.++..+| .++...|++++|+..|+++++++|
T Consensus 263 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~p 336 (388)
T 1w3b_A 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-----THADSLNNLA-NIKREQGNIEEAVRLYRKALEVFP 336 (388)
T ss_dssp HHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-----TCHHHHHHHH-HHHHTTTCHHHHHHHHHHHTTSCT
T ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----ccHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 65 3333222 56677889999999999 999999 9999999999 999999999999999999999999
Q ss_pred Cc-ccccccccccc-cCCcHHHHHHHHHHHh
Q 013948 379 GI-RIGGNINLNFG-ENMPEDITGALRSMME 407 (433)
Q Consensus 379 ~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~ 407 (433)
++ ....++...+. ..+.++....++...+
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98 55555544442 3455555555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-27 Score=224.18 Aligned_cols=286 Identities=12% Similarity=0.061 Sum_probs=234.2
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
..+++++|+.+|+++++.+|+++.++...+.++.....+..+....... +.+.+
T Consensus 15 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--------------------~~~~~------ 68 (359)
T 3ieg_A 15 AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV--------------------IALKM------ 68 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH--------------------HHHCT------
T ss_pred HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH--------------------HHhCC------
Confidence 3567999999999999999999866666665555555555554421000 00100
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHh---hccccccchhhHHHHHHHH------
Q 013948 114 DSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEME---KSGAHAYNQKNLAEIFKCQ------ 184 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~l------ 184 (433)
.....+..+...... .|++++|+..|++++...| .+ ..++..+
T Consensus 69 -----~~~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~ 120 (359)
T 3ieg_A 69 -----DFTAARLQRGHLLLK-------------QGKLDEAEDDFKKVLKSNPSEQEE----------KEAESQLVKADEM 120 (359)
T ss_dssp -----TCHHHHHHHHHHHHH-------------HTCHHHHHHHHHHHHTSCCCHHHH----------HHHHHHHHHHHHH
T ss_pred -----CcchHHHHHHHHHHH-------------cCChHHHHHHHHHHHhcCCcccCh----------HHHHHHHHHHHHH
Confidence 011222223333332 6899999999999999988 65 4455444
Q ss_pred ------HHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 185 ------GNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 185 ------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|.++.+++.+|.++..
T Consensus 121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 121 QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHHHHHHHHhcccccccCC-Cccch---------hh
Q 013948 259 QGNYNDAIEKGFKKALQLDPNNEAVKENI------------RMAEQKLREERQRTGWDQTTSS-SHYSQ---------ES 316 (433)
Q Consensus 259 ~g~~~~A~~~~~~~al~~~p~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~-~~~~~---------~~ 316 (433)
.|++++|+. .++++++.+|++..++..+ +.++...|++++|...+..+.. .+... .+
T Consensus 201 ~~~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la 279 (359)
T 3ieg_A 201 LGDHELSLS-EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERIC 279 (359)
T ss_dssp HTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHH-HHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 999999999 9999999999998876543 7778899999999998777652 22222 14
Q ss_pred hhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 317 NQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 317 ~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
..+...|++++|+..| ++..+| +++.++..+| .++...|++++|+..|+++++++|++
T Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 280 HCFSKDEKPVEAIRICSEVLQMEP-----DNVNALKDRA-EAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc-----ccHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 5678889999999999 999999 9999999999 99999999999999999999999997
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=216.49 Aligned_cols=217 Identities=10% Similarity=0.018 Sum_probs=195.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ-QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.|++++|+..+++++..+|.+ ..+++.+|.++...| ++++|+..|++++..+|+++.+|+.+|.++...
T Consensus 69 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 138 (330)
T 3hym_B 69 LNKANELFYLSHKLVDLYPSN----------PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE 138 (330)
T ss_dssp HTCHHHHHHHHHHHHHHCTTS----------THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCC----------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc
Confidence 478999999999999998887 788999999999999 999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
|++++|+..++++++..|++..++..+|.++...|++++|+. +++++++.+|.++.++..+|.++...|++++|...+.
T Consensus 139 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 139 SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAER-FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHH-HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999988876
Q ss_pred ccCCC----------ccc-----hhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHH
Q 013948 306 TTSSS----------HYS-----QESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGE 368 (433)
Q Consensus 306 ~~~~~----------~~~-----~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~ 368 (433)
.+... +.. ..+..|...|++++|+..| ++..+| +++.++..+| .++..+|++++|+.
T Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~la-~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-----QNASTYSAIG-YIHSLMGNFENAVD 291 (330)
T ss_dssp HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCSHHHHHHH-HHHHHHTCHHHHHH
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-----cchHHHHHHH-HHHHHhccHHHHHH
Confidence 65421 111 1256778889999999999 899999 8999999999 99999999999999
Q ss_pred HHhhhcCCCCCc
Q 013948 369 DSNVSGSDEPGI 380 (433)
Q Consensus 369 ~~~~al~l~P~~ 380 (433)
.|+++++++|++
T Consensus 292 ~~~~al~~~p~~ 303 (330)
T 3hym_B 292 YFHTALGLRRDD 303 (330)
T ss_dssp HHHTTTTTCSCC
T ss_pred HHHHHHccCCCc
Confidence 999999999998
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-26 Score=225.92 Aligned_cols=295 Identities=12% Similarity=0.064 Sum_probs=233.9
Q ss_pred chhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCCC
Q 013948 35 LEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPD 114 (433)
Q Consensus 35 ~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 114 (433)
.+++++|+.+|+++++++|+++.++...+.++.....++.+...... .+.+.+
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------------------al~~~p------- 91 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK--------------------VIQLKM------- 91 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------HHHHCT-------
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHH--------------------HHhcCC-------
Confidence 46799999999999999999985555555555444444444431100 000100
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhcc---cccc--chhhHHHHHHHHHHHHH
Q 013948 115 STGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSG---AHAY--NQKNLAEIFKCQGNRVM 189 (433)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~--~~~~~~~~~~~lg~~~~ 189 (433)
.....+..+...+.. .|++++|+..|++++...|.+. .... ........++.+|.++.
T Consensus 92 ----~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 92 ----DFTAARLQRGHLLLK-------------QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp ----TCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CcHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011222223333333 6899999999999999887651 0000 00001112445588899
Q ss_pred HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 269 (433)
..|++++|+..|++++..+|.+..+++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+. .
T Consensus 155 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~ 233 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS-E 233 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHH-H
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHhhCCCCHHHHHHH------------HHHHHHHHHHHHhcccccccCC-Cccch---------hhhhhhcCCCCCC
Q 013948 270 FKKALQLDPNNEAVKENI------------RMAEQKLREERQRTGWDQTTSS-SHYSQ---------ESNQSTGGFRSHG 327 (433)
Q Consensus 270 ~~~al~~~p~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~ 327 (433)
|++++.++|++...+..+ +.++...|++++|...+..+.. .|... .+..+...|++++
T Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 234 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 999999999999988776 8999999999999998877652 22221 1567888899999
Q ss_pred CCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 328 TPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 328 A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
|+..+ ++..+| +++.++..+| .++...|++++|+..|+++++++|++
T Consensus 314 A~~~~~~a~~~~p-----~~~~~~~~l~-~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 314 AIRVCSEVLQMEP-----DNVNALKDRA-EAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHHHHHHHCT-----TCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHhCc-----ccHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 99999 899999 9999999999 99999999999999999999999998
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-26 Score=220.68 Aligned_cols=195 Identities=9% Similarity=0.040 Sum_probs=165.8
Q ss_pred cch-HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQ-VDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.|+ +++|+..|++++.++|++ ..+|+.+|.++...|++++|+.+|++++.++|++..+|+++|.++..+
T Consensus 144 ~g~d~~eAl~~~~~al~l~P~~----------~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~ 213 (382)
T 2h6f_A 144 LQKDLHEEMNYITAIIEEQPKN----------YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF 213 (382)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc
Confidence 465 899999999999998888 889999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHhhCCCCHHHHHHHHHHHHHHH--HH
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA-QGNYNDA-----IEKGFKKALQLDPNNEAVKENIRMAEQKLR--EE 297 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A-----~~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~ 297 (433)
|++++|+.+|+++++++|++..+|+.+|.++.. .|.+++| +. +|++++.++|++..+|.+++.++...| ++
T Consensus 214 g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~-~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~ 292 (382)
T 2h6f_A 214 KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ-YTLEMIKLVPHNESAWNYLKGILQDRGLSKY 292 (382)
T ss_dssp TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHTTTCGGGC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHccCccch
Confidence 999999999999999999999999999999998 5554777 47 899999999999999999998888766 35
Q ss_pred HHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCC--------C-hhhHHH
Q 013948 298 RQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQP--------S-QSRQGE 368 (433)
Q Consensus 298 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g--------~-~~~A~~ 368 (433)
+++..... .+..+| +.+.++..+| .++..+| + +++|+.
T Consensus 293 ~~a~~~~~---------------------------~~~~~p-----~~~~al~~La-~~~~~~~~~~~~~~~~~~~~A~~ 339 (382)
T 2h6f_A 293 PNLLNQLL---------------------------DLQPSH-----SSPYLIAFLV-DIYEDMLENQCDNKEDILNKALE 339 (382)
T ss_dssp HHHHHHHH---------------------------HHTTTC-----CCHHHHHHHH-HHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHH---------------------------HhccCC-----CCHHHHHHHH-HHHHHHhcccccchHHHHHHHHH
Confidence 55544433 236788 9999999999 9998874 2 589999
Q ss_pred HHhhh-cCCCCCc-ccccc
Q 013948 369 DSNVS-GSDEPGI-RIGGN 385 (433)
Q Consensus 369 ~~~~a-l~l~P~~-~~~~~ 385 (433)
.|+++ +++||.. ..+..
T Consensus 340 ~~~~l~~~~DP~r~~~w~~ 358 (382)
T 2h6f_A 340 LCEILAKEKDTIRKEYWRY 358 (382)
T ss_dssp HHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhCchhHHHHHH
Confidence 99999 9999987 44433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=193.62 Aligned_cols=184 Identities=14% Similarity=0.133 Sum_probs=162.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI- 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~- 225 (433)
.|++++|+..|+++++.+|.+ +.+++.+|.++...|++++|+..|+++++++|+++.+++++|.++...
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 87 (217)
T 2pl2_A 18 LGRYDAALTLFERALKENPQD----------PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALY 87 (217)
T ss_dssp TTCHHHHHHHHHHHHTTSSSC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Confidence 589999999999999999988 899999999999999999999999999999999999999999999999
Q ss_pred ----------hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013948 226 ----------HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLR 295 (433)
Q Consensus 226 ----------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 295 (433)
|++++|+..|+++++++|+++.+++.+|.++..+|++++|+. +|+++++++ +++.++..+|.++..+|
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~-~~~~~~~~la~~~~~~g 165 (217)
T 2pl2_A 88 RQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEA-SLKQALALE-DTPEIRSALAELYLSMG 165 (217)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-CCHHHHHHHHHHHHHHT
T ss_pred hhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH-HHHHHHhcc-cchHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999 999999999 99999999999999999
Q ss_pred HHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhc
Q 013948 296 EERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSG 374 (433)
Q Consensus 296 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al 374 (433)
++++|...++. ++..+| +++.++..+| .++..+|++++|+..|+++.
T Consensus 166 ~~~~A~~~~~~--------------------------al~~~P-----~~~~~~~~la-~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 166 RLDEALAQYAK--------------------------ALEQAP-----KDLDLRVRYA-SALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CHHHHHHHHHH--------------------------HHHHST-----TCHHHHHHHH-HHHTC---------------
T ss_pred CHHHHHHHHHH--------------------------HHHhCC-----CChHHHHHHH-HHHHHccCHHHHHHHHHHHh
Confidence 99999887663 577899 9999999999 99999999999999998763
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=187.37 Aligned_cols=149 Identities=12% Similarity=0.098 Sum_probs=132.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhcCCCHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS-----------QQYSDAIELYSFAIALCGNNAVYY 215 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~ 215 (433)
.|++++|+..|++++.++|.+ ..+++.+|.++... |++++|+..|+++++++|+++.++
T Consensus 52 ~g~~~~A~~~~~~al~~~P~~----------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 121 (217)
T 2pl2_A 52 LGLVNPALENGKTLVARTPRY----------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121 (217)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHH
Confidence 589999999999999999988 89999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013948 216 SNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLR 295 (433)
Q Consensus 216 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 295 (433)
+++|.++..+|++++|+..|+++++++ +++.+++.+|.++...|++++|+. .|+++++++|+++.++..++.++..+|
T Consensus 122 ~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 122 LQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALA-QYAKALEQAPKDLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 999999999999999999999999999 999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHhccccccc
Q 013948 296 EERQRTGWDQTT 307 (433)
Q Consensus 296 ~~~~a~~~~~~~ 307 (433)
++++|...+...
T Consensus 200 ~~~~A~~~~~~~ 211 (217)
T 2pl2_A 200 KAEEAARAAALE 211 (217)
T ss_dssp ------------
T ss_pred CHHHHHHHHHHH
Confidence 999998887754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.9e-25 Score=210.45 Aligned_cols=216 Identities=12% Similarity=0.037 Sum_probs=121.1
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
|++++|+.+|++++..+|.+ ..+++.+|.++...|++++|+..|++++.++|++..+++.+|.++...|+
T Consensus 79 g~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 148 (365)
T 4eqf_A 79 GDLPVTILFMEAAILQDPGD----------AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH 148 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCcCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc
Confidence 45555555555555554444 44555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHH
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRL----------GLAYYAQGNYNDAIEKGFKKALQLDPN--NEAVKENIRMAEQKLR 295 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~l----------g~~~~~~g~~~~A~~~~~~~al~~~p~--~~~~~~~l~~~~~~~~ 295 (433)
+++|+..|+++++++|++..++..+ |.++...|++++|+. +|+++++++|. ++.++..+|.++...|
T Consensus 149 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 149 QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE-LYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227 (365)
T ss_dssp HHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHH-HHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHH-HHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence 5555555555555555443333332 455555555555555 55555555555 4555555555555555
Q ss_pred HHHHhcccccccCC-Cccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHH
Q 013948 296 EERQRTGWDQTTSS-SHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQG 367 (433)
Q Consensus 296 ~~~~a~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~ 367 (433)
++++|...+..+.. .|.... +..|...|++++|+..| ++..+| +++.++..+| .++..+|++++|+
T Consensus 228 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~-~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-----GFIRSRYNLG-ISCINLGAYREAV 301 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHH-HHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CchHHHHHHH-HHHHHCCCHHHHH
Confidence 55555554444331 111111 33344445555555555 788899 9999999999 9999999999999
Q ss_pred HHHhhhcCCCCCc
Q 013948 368 EDSNVSGSDEPGI 380 (433)
Q Consensus 368 ~~~~~al~l~P~~ 380 (433)
..|+++++++|+.
T Consensus 302 ~~~~~al~~~~~~ 314 (365)
T 4eqf_A 302 SNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHhCccc
Confidence 9999999999885
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-25 Score=212.99 Aligned_cols=216 Identities=14% Similarity=0.101 Sum_probs=155.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|+++++.+|.+ ..++..+|.++...|++++|+..|++++.++|+++.+++.+|.++...|
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 146 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKH----------MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 146 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 467777777777777766665 6667777777777777777777777777777777777777777777777
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHhhCCC--CHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYS----------------RLGLAYYAQGNYNDAIEKGFKKALQLDPN--NEAVKENIR 288 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~----------------~lg~~~~~~g~~~~A~~~~~~~al~~~p~--~~~~~~~l~ 288 (433)
++++|+..+++++.++|.+...+. .+|.++ ..|++++|+. .|+++++++|. ++.++..+|
T Consensus 147 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~-~~~~a~~~~p~~~~~~~~~~l~ 224 (368)
T 1fch_A 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKE-LFLAAVRLDPTSIDPDVQCGLG 224 (368)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHH-HHHHHHHHSTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHH-HHHHHHHhCcCcccHHHHHHHH
Confidence 777777777777777776655544 345554 6677777777 77777777776 667777777
Q ss_pred HHHHHHHHHHHhcccccccCC-Cccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccC
Q 013948 289 MAEQKLREERQRTGWDQTTSS-SHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQ 360 (433)
Q Consensus 289 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~ 360 (433)
.++...|++++|...+..+.. .|.... +..+...|++++|+..| ++..+| +.+.++..+| .++..+
T Consensus 225 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~l~-~~~~~~ 298 (368)
T 1fch_A 225 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-----GYIRSRYNLG-ISCINL 298 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHH-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHH-HHHHHC
Confidence 777777777777666555442 222111 44556667777777777 788899 9999999999 999999
Q ss_pred CChhhHHHHHhhhcCCCCCc
Q 013948 361 PSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 361 g~~~~A~~~~~~al~l~P~~ 380 (433)
|++++|+..|+++++++|++
T Consensus 299 g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999998876
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.91 E-value=8e-24 Score=217.36 Aligned_cols=217 Identities=11% Similarity=0.014 Sum_probs=201.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..+++++...|.+ ..++..+|.++...|++++|+..|+++++++|.+..+|+.+|.++...|
T Consensus 352 ~g~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRHPEK----------AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HTCHHHHHHHHHHHHHHCTTS----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhhCccc----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 689999999999999988877 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|+++++..|++..++..+|.++...|++++|+. .|+++++..|.++.++..++.++...|++++|...+..
T Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 422 EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE-YLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp CHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999998877
Q ss_pred cCC-------Cccc-h-----hhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHh
Q 013948 307 TSS-------SHYS-Q-----ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSN 371 (433)
Q Consensus 307 ~~~-------~~~~-~-----~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~ 371 (433)
+.. .+.. . .+..|...|++++|+..| ++..+| +++.+|..+| .++...|++++|+..|+
T Consensus 501 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~-~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-----NDANVHTAIA-LVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-----CCHHHHHHHH-HHHHHTTCHHHHHHHHH
T ss_pred HHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CChHHHHHHH-HHHHHhCCHHHHHHHHH
Confidence 642 2221 1 156678889999999999 888999 9999999999 99999999999999999
Q ss_pred hhcCCCCCc
Q 013948 372 VSGSDEPGI 380 (433)
Q Consensus 372 ~al~l~P~~ 380 (433)
++++++|++
T Consensus 575 ~~l~~~p~~ 583 (597)
T 2xpi_A 575 ESLAISPNE 583 (597)
T ss_dssp HHHHHCTTC
T ss_pred HHHhcCCCC
Confidence 999999998
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=182.13 Aligned_cols=170 Identities=14% Similarity=0.156 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..+.+++...|+++.++..+|.++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCC
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFN 337 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~ 337 (433)
..++++.|.. .+.++++++|.+..++..+|.++..+|++++|+..+++ ++..+
T Consensus 85 ~~~~~~~a~~-~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~--------------------------~l~~~ 137 (184)
T 3vtx_A 85 MIDEKQAAID-ALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEK--------------------------TISIK 137 (184)
T ss_dssp HTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------HHHHC
T ss_pred HcCCHHHHHH-HHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHH--------------------------HHHhc
Confidence 9999999999 99999999999999999999999999999999887663 57789
Q ss_pred CCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 338 TNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 338 p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
| +++.+++++| .++..+|++++|+.+|+++++++|++
T Consensus 138 p-----~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 138 P-----GFIRAYQSIG-LAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp T-----TCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred c-----hhhhHHHHHH-HHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 9 9999999999 99999999999999999999999987
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.1e-24 Score=194.72 Aligned_cols=202 Identities=16% Similarity=0.109 Sum_probs=171.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..+++++. .|.+ ......++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 50 ~~~~~~A~~~~~~a~~-~~~~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 122 (272)
T 3u4t_A 50 LAKYDLAQKDIETYFS-KVNA------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122 (272)
T ss_dssp TTCHHHHHHHHHHHHT-TSCT------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHh-ccCc------hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc
Confidence 5899999999999999 4433 12236779999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH---HHHhccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE---ERQRTGW 303 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~a~~~ 303 (433)
++++|+.+|+++++++|.++.+++.+|...+..+++++|+. .|+++++++|++..++..++.++..+++ +++|...
T Consensus 123 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 201 (272)
T 3u4t_A 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS-SFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPY 201 (272)
T ss_dssp CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHH
T ss_pred CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHH
Confidence 99999999999999999999999999955666679999999 9999999999999999999999998877 5555555
Q ss_pred ccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 304 DQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+..+... ....|.........++..+| .++...|++++|+.+|+++++++|++
T Consensus 202 ~~~a~~~-----------------------~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 202 YEKLIEV-----------------------CAPGGAKYKDELIEANEYIA-YYYTINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHH-----------------------HGGGGGGGHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHH-----------------------HhcccccchHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCccH
Confidence 4432211 11123000013568999999 99999999999999999999999998
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-24 Score=220.50 Aligned_cols=216 Identities=11% Similarity=0.103 Sum_probs=180.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..+++++...|. ..++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPT-----------PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHhcCCC-----------chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Confidence 47888888888888887654 5678888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|+++++++|+++.++..+|.++...|++++|+. .++++++.+|+++.++..+|.++...|++++|...+..
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEA-FFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888 88888888888888888888888888888888887766
Q ss_pred cCCC-ccchh-----------hhhhhcC----------CCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCC
Q 013948 307 TSSS-HYSQE-----------SNQSTGG----------FRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPS 362 (433)
Q Consensus 307 ~~~~-~~~~~-----------~~~~~~~----------~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~ 362 (433)
+... +.... +..+... |++++|+..| ++..+| +++.++..+| .++..+|+
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~l~-~~~~~~g~ 477 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-----RSEQAKIGLA-QLKLQMEK 477 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHH-HHHHHTTC
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-----CCHHHHHHHH-HHHHHhcc
Confidence 5421 11100 2344444 8888888888 899999 9999999999 99999999
Q ss_pred hhhHHHHHhhhcCCCCCc
Q 013948 363 QSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 363 ~~~A~~~~~~al~l~P~~ 380 (433)
+++|+..|+++++++|++
T Consensus 478 ~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 478 IDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 999999999999999998
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.1e-24 Score=216.95 Aligned_cols=246 Identities=13% Similarity=0.095 Sum_probs=216.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+.+|++++...|.+ ..++..++.++...|++++|+..|.+++..+|++..+++.+|.+|.+.|
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYN----------LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHcCccc----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc
Confidence 699999999999999998876 6789999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|+++++++|.+..+|..+|.++...|++++|+. .|+++++..|++..++..++.++...|++++|...+..
T Consensus 388 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS-AYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999877
Q ss_pred cCC-Cccch-----hhhhhhcCCCCCCCCCcc--cccC------CCCCCCccH-HHHHHHHhhcccccCCChhhHHHHHh
Q 013948 307 TSS-SHYSQ-----ESNQSTGGFRSHGTPPSF--TMPF------NTNALPTDI-ASMLMNMASNMPQAQPSQSRQGEDSN 371 (433)
Q Consensus 307 ~~~-~~~~~-----~~~~~~~~~~~~~A~~~~--al~~------~p~~~~~~~-~~a~~~la~~~~~~~g~~~~A~~~~~ 371 (433)
+.. .+.+. .+..|...|++++|+..| ++.. +| +. ..+|..+| .++...|++++|+..|+
T Consensus 467 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p-----~~~~~~~~~l~-~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 467 SYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE-----KPWAATWANLG-HAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS-----GGGHHHHHHHH-HHHHHTTCHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch-----hhHHHHHHHHH-HHHHHhcCHHHHHHHHH
Confidence 652 22222 256788889999999999 6665 56 54 89999999 99999999999999999
Q ss_pred hhcCCCCCc-ccccccccccc-cCCcHHHHHHHHHHHhhc
Q 013948 372 VSGSDEPGI-RIGGNINLNFG-ENMPEDITGALRSMMEMF 409 (433)
Q Consensus 372 ~al~l~P~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~~~ 409 (433)
++++++|++ ..+..++..+. ..+.++....++.+.+..
T Consensus 541 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999998 44444443332 466666666666666543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=203.48 Aligned_cols=193 Identities=8% Similarity=0.012 Sum_probs=175.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ-YSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.|++++|+..|+++|.++|.+ ..+|+.+|.++...|+ +++|+..|++++.++|++..+|+++|.++..+
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~----------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~ 179 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAAN----------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL 179 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCccC----------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 689999999999999999998 9999999999999997 99999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-HHHHHhcccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL-REERQRTGWD 304 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~a~~~~ 304 (433)
|++++|+.+|+++++++|++..+|+++|.++..+|++++|+. +|+++++++|++..+|.++|.++..+ |..++|...
T Consensus 180 g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~-~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~- 257 (382)
T 2h6f_A 180 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQ-YVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE- 257 (382)
T ss_dssp TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHH-
T ss_pred cCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHH-
Confidence 999999999999999999999999999999999999999999 99999999999999999999999884 332444200
Q ss_pred cccCCCccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCC--ChhhHHHHHhhhcCCCCCc
Q 013948 305 QTTSSSHYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQP--SQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g--~~~~A~~~~~~al~l~P~~ 380 (433)
.++..| ++.++| ++..+|++++ .++..+| ++++|++.++++ +.+|++
T Consensus 258 ----------------------~el~~~~~Al~l~P-----~~~~a~~~l~-~ll~~~g~~~~~~a~~~~~~~-~~~p~~ 308 (382)
T 2h6f_A 258 ----------------------REVQYTLEMIKLVP-----HNESAWNYLK-GILQDRGLSKYPNLLNQLLDL-QPSHSS 308 (382)
T ss_dssp ----------------------HHHHHHHHHHHHST-----TCHHHHHHHH-HHHTTTCGGGCHHHHHHHHHH-TTTCCC
T ss_pred ----------------------HHHHHHHHHHHHCC-----CCHHHHHHHH-HHHHccCccchHHHHHHHHHh-ccCCCC
Confidence 001223 788999 9999999999 8999888 699999999998 999998
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-24 Score=205.61 Aligned_cols=217 Identities=10% Similarity=0.054 Sum_probs=178.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHH----------
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYS---------- 216 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---------- 216 (433)
.|++++|+..|++++..+|.+ ..++..+|.++...|++++|+..|++++..+|++...+.
T Consensus 111 ~g~~~~A~~~~~~al~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 1fch_A 111 NEQELLAISALRRCLELKPDN----------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG 180 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------
T ss_pred CcCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhc
Confidence 689999999999999998877 788999999999999999999999999999888776654
Q ss_pred ------HHHHHHHHhhcHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013948 217 ------NRAAAYTQIHQYAEAVRDCLKSIDIDPN--YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288 (433)
Q Consensus 217 ------~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~ 288 (433)
.++.++ ..|++++|+..|+++++++|. ++.++..+|.++...|++++|+. +|+++++++|+++.++..+|
T Consensus 181 ~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~l~ 258 (368)
T 1fch_A 181 LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD-CFTAALSVRPNDYLLWNKLG 258 (368)
T ss_dssp -----CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCcCCHHHHHHHH
Confidence 466666 888888888888888888888 78888888888888888888888 88888888888888888888
Q ss_pred HHHHHHHHHHHhcccccccCC-Cccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCC------CccHHHHHHHHhh
Q 013948 289 MAEQKLREERQRTGWDQTTSS-SHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNAL------PTDIASMLMNMAS 354 (433)
Q Consensus 289 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~------~~~~~~a~~~la~ 354 (433)
.++...|++++|...+..+.. .|.... +..|...|++++|+..| ++..+|... +.....+|..+|
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~- 337 (368)
T 1fch_A 259 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR- 337 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHH-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHH-
Confidence 888888888888888776652 222221 55677778888888888 888887210 012289999999
Q ss_pred cccccCCChhhHHHHHhhhcCC
Q 013948 355 NMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~al~l 376 (433)
.++..+|++++|...++++++.
T Consensus 338 ~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 338 LALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHhCChHhHHHhHHHHHHH
Confidence 9999999999999999988654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-24 Score=202.22 Aligned_cols=216 Identities=9% Similarity=0.026 Sum_probs=125.4
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHH---------
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR--------- 218 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------- 218 (433)
|++++|+..+++++...|.+ ..++..+|.++...|++++|+..|++++..+|.+...+..+
T Consensus 69 ~~~~~A~~~~~~a~~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (327)
T 3cv0_A 69 EKDGLAIIALNHARMLDPKD----------IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDD 138 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------
T ss_pred CCHHHHHHHHHHHHhcCcCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHH
Confidence 55666666666666665554 55566666666666666666666666666666555555444
Q ss_pred -----HH-HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013948 219 -----AA-AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQ 292 (433)
Q Consensus 219 -----a~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (433)
+. ++...|++++|+..++++++.+|.++.++..+|.++...|++++|+. +++++++.+|+++.++..++.++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~ 217 (327)
T 3cv0_A 139 LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAA-NLRRAVELRPDDAQLWNKLGATLA 217 (327)
T ss_dssp -------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44 45555666666666666666666666666666666666666666666 666666666666666666666666
Q ss_pred HHHHHHHhcccccccCC-Cccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCcc------------HHHHHHHH
Q 013948 293 KLREERQRTGWDQTTSS-SHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTD------------IASMLMNM 352 (433)
Q Consensus 293 ~~~~~~~a~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~------------~~~a~~~l 352 (433)
..|++++|...+..+.. .+.... +..|...|++++|+..| ++..+| + .+.++..+
T Consensus 218 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~l 292 (327)
T 3cv0_A 218 NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV-----GGTTPTGEASREATRSMWDFF 292 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-----TSCC-----CCTHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----ccccccccchhhcCHHHHHHH
Confidence 66666655555443321 111111 23333444444444444 555566 4 67788888
Q ss_pred hhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 353 ASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 353 a~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
| .++..+|++++|...++++++..|+.
T Consensus 293 ~-~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 293 R-MLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp H-HHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred H-HHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 8 78888888888888888777665554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-25 Score=218.78 Aligned_cols=211 Identities=15% Similarity=0.109 Sum_probs=155.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI- 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~- 225 (433)
.+++++|+.++++++..+|.. ..++..+|.++...|++++|+..|.++++.+|+++.+++++|.+|...
T Consensus 226 ~~~~~~a~~~~~~al~~~~~~----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~ 295 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKAPGV----------TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKV 295 (472)
T ss_dssp ----CHHHHHHHHHHHHCSSC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCccH----------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 588999999999999998887 889999999999999999999999999999999999999999998654
Q ss_pred ------------------hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH---HH
Q 013948 226 ------------------HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA---VK 284 (433)
Q Consensus 226 ------------------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~---~~ 284 (433)
+.+++|+..++++++++|.+..++..+|.++...|++++|+. +|+++++++|++.. ++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~-~~~kaL~~~~~~~~~~~~~ 374 (472)
T 4g1t_A 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY-YFQKEFSKELTPVAKQLLH 374 (472)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHH-HHHHHHHSCCCHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHH-HHHHHHhcCCCChHHHHHH
Confidence 347889999999999999999999999999999999999999 99999999987654 34
Q ss_pred HHHHHHH-HHHHHHHHhcccccccC-CCccchhh-hhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhccccc
Q 013948 285 ENIRMAE-QKLREERQRTGWDQTTS-SSHYSQES-NQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQA 359 (433)
Q Consensus 285 ~~l~~~~-~~~~~~~~a~~~~~~~~-~~~~~~~~-~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~ 359 (433)
..++.+. ...|++++|+.++.++. ..+..... ..+ ..+...+ ++..+| +++.++.++| .++..
T Consensus 375 ~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~------~~l~~~~~~~l~~~p-----~~~~~~~~LG-~~~~~ 442 (472)
T 4g1t_A 375 LRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK------DKLQKIAKMRLSKNG-----ADSEALHVLA-FLQEL 442 (472)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH------HHHHHHHHHHHHHCC------CTTHHHHHH-HHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH------HHHHHHHHHHHHhCC-----CCHHHHHHHH-HHHHH
Confidence 5555543 35577888888877655 22222110 000 0011112 677899 9999999999 99999
Q ss_pred CCChhhHHHHHhhhcCCCCCc
Q 013948 360 QPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 360 ~g~~~~A~~~~~~al~l~P~~ 380 (433)
+|++++|+++|++|++++|.+
T Consensus 443 ~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 443 NEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp HHHCC----------------
T ss_pred cCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999987
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-24 Score=212.33 Aligned_cols=244 Identities=11% Similarity=0.013 Sum_probs=210.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHH-----
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA---VYYSNR----- 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l----- 218 (433)
.|++++|+..|+++++..|.+ ..++..+|.++...|++++|+..|++++..+|++. .++..+
T Consensus 73 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 142 (450)
T 2y4t_A 73 MGKSKAALPDLTKVIQLKMDF----------TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDE 142 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 689999999999999998887 88999999999999999999999999999999988 776655
Q ss_pred -------HHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 219 -------AAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 219 -------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+. .|+++++.+|.++.++..++.++
T Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 143 MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS-DLKAASKLKNDNTEAFYKISTLY 221 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHH-HHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHH
Confidence 6779999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHhcccccccCC-Cccchh-----------------hhhhhcCCCCCCCCCcc--cccCCCCCCCccH----HH
Q 013948 292 QKLREERQRTGWDQTTSS-SHYSQE-----------------SNQSTGGFRSHGTPPSF--TMPFNTNALPTDI----AS 347 (433)
Q Consensus 292 ~~~~~~~~a~~~~~~~~~-~~~~~~-----------------~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~----~~ 347 (433)
...|++++|...+..+.. .|.... +..+...|++++|+..| ++..+| ++ ..
T Consensus 222 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~~ 296 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-----SIAEYTVR 296 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-----SSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----cchHHHHH
Confidence 999999999998877652 222222 45667779999999999 888999 55 45
Q ss_pred HHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccc-cCCcHHHHHHHHHHHh
Q 013948 348 MLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFG-ENMPEDITGALRSMME 407 (433)
Q Consensus 348 a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~ 407 (433)
++..+| .++...|++++|+..++++++++|++ ..+.+++..+. ..+.++....++...+
T Consensus 297 ~~~~l~-~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 297 SKERIC-HCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHH-HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 889999 99999999999999999999999998 55444443332 4555555555555544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-23 Score=198.47 Aligned_cols=229 Identities=10% Similarity=0.025 Sum_probs=204.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++..+|.+ ..++..++.++...|++++|+..+.+++..+|+++.+|+.+|.++...|
T Consensus 35 ~g~~~~A~~~~~~~l~~~p~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEKDPFH----------ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVG 104 (330)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHcCCCC----------hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhh
Confidence 489999999999999999887 6788889999999999999999999999999999999999999999999
Q ss_pred -cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 227 -QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 227 -~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
++++|+.+|++++.++|+++.+|..+|.++...|++++|+. .|++++++.|++..++..++.++...|++++|...+.
T Consensus 105 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 105 HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMA-AYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp SCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 9999999999999999999999999999999999988
Q ss_pred ccCC-Cccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCC----CccHHHHHHHHhhcccccCCChhhHHHHHhhh
Q 013948 306 TTSS-SHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNAL----PTDIASMLMNMASNMPQAQPSQSRQGEDSNVS 373 (433)
Q Consensus 306 ~~~~-~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~----~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~a 373 (433)
.+.. .+.... +..+...|++++|+..+ ++...|... +...+.++..+| .++..+|++++|+..|+++
T Consensus 184 ~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~a 262 (330)
T 3hym_B 184 QALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG-HVCRKLKKYAEALDYHRQA 262 (330)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH-HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH-HHHHHhcCHHHHHHHHHHH
Confidence 7763 333222 56788889999999999 666652100 016678999999 9999999999999999999
Q ss_pred cCCCCCc-ccccccc
Q 013948 374 GSDEPGI-RIGGNIN 387 (433)
Q Consensus 374 l~l~P~~-~~~~~~~ 387 (433)
++++|++ ....++.
T Consensus 263 ~~~~~~~~~~~~~la 277 (330)
T 3hym_B 263 LVLIPQNASTYSAIG 277 (330)
T ss_dssp HHHSTTCSHHHHHHH
T ss_pred HhhCccchHHHHHHH
Confidence 9999998 4444444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-24 Score=217.41 Aligned_cols=250 Identities=15% Similarity=0.073 Sum_probs=184.6
Q ss_pred cchHHHHHHHHHHHHHH-------HhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINE-------MEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRA 219 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 219 (433)
.|++++|+..|++++.. .|.+. ...+....+++.+|.++...|++++|+..|++++..+|+ ..+++.+|
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~ 277 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDE---KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMA 277 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCH---HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCcccc---ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHH
Confidence 68999999999999993 22220 012445888999999999999999999999999999988 88888888
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQ 299 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 299 (433)
.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+. +|+++++++|.+..++..++.++...|++++
T Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 278 LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK-DFDKAKELDPENIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH-HHHHHHHTCSSCSHHHHHHHHHTTTTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhChhhHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888888888888888888888888888888888888 8888888888888888888888888888888
Q ss_pred hcccccccCC-Cccch-----hhhhhhcCCCCCCCCCcc--cccCCCCCCCccHH------HHHHHHhhccccc---CCC
Q 013948 300 RTGWDQTTSS-SHYSQ-----ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIA------SMLMNMASNMPQA---QPS 362 (433)
Q Consensus 300 a~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~------~a~~~la~~~~~~---~g~ 362 (433)
|...+..+.. .+... .+..|...|++++|+..| ++..+| +.+ .++..+| .++.. .|+
T Consensus 357 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~~~l~-~~~~~~~~~~~ 430 (514)
T 2gw1_A 357 CETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN-----KLDGIYVGIAPLVGKA-TLLTRNPTVEN 430 (514)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----TSSSCSSCSHHHHHHH-HHHHTSCCTTH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh-----ccchHHHHHHHHHHHH-HHHhhhhhcCC
Confidence 8777665542 12111 145667778888888777 666666 443 3777777 77777 788
Q ss_pred hhhHHHHHhhhcCCCCCc-ccccccccccc-cCCcHHHHHHHHHHHh
Q 013948 363 QSRQGEDSNVSGSDEPGI-RIGGNINLNFG-ENMPEDITGALRSMME 407 (433)
Q Consensus 363 ~~~A~~~~~~al~l~P~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~ 407 (433)
+++|+..|+++++++|++ .....+...+. ..+.++....++...+
T Consensus 431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 888888888888888777 33333222221 3444444444444444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-23 Score=198.40 Aligned_cols=228 Identities=11% Similarity=0.042 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...++.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHH----------HHHHHHHHHHHHhcccccccCC-Ccc--ch-----hhhhh
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENI----------RMAEQKLREERQRTGWDQTTSS-SHY--SQ-----ESNQS 319 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l----------~~~~~~~~~~~~a~~~~~~~~~-~~~--~~-----~~~~~ 319 (433)
..|++++|+. +|+++++++|++..++..+ +.++...|++++|...+..+.. .|. .. .+..|
T Consensus 145 ~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACE-ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHH-HHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHH-HHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 9999999999 9999999999877766655 9999999999999999887763 222 12 15677
Q ss_pred hcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccc-cCCc
Q 013948 320 TGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFG-ENMP 395 (433)
Q Consensus 320 ~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~-~~~~ 395 (433)
...|++++|+..| ++..+| +++.++..+| .++..+|++++|+..|+++++++|++ ....+++..+. ..+.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRP-----EDYSLWNRLG-ATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 8889999999999 999999 9999999999 99999999999999999999999998 55555443332 4566
Q ss_pred HHHHHHHHHHHhhcCCC
Q 013948 396 EDITGALRSMMEMFSGP 412 (433)
Q Consensus 396 ~~~~~a~~~~~~~~~~~ 412 (433)
++....++...+.....
T Consensus 298 ~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCccc
Confidence 66666666666655443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=193.06 Aligned_cols=244 Identities=11% Similarity=0.012 Sum_probs=208.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC---CCHHHHHHH-----
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG---NNAVYYSNR----- 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l----- 218 (433)
.|++++|+..+++++...|.+ ..++..+|.++...|++++|+..|++++..+| ++..++..+
T Consensus 50 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (359)
T 3ieg_A 50 MGKSKAALPDLTKVIALKMDF----------TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE 119 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCc----------chHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH
Confidence 589999999999999998887 78999999999999999999999999999999 888888777
Q ss_pred -------HHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 219 -------AAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 219 -------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+. .++++++.+|.++.++..+|.++
T Consensus 120 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 120 MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS-DLKAASKLKSDNTEAFYKISTLY 198 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHhcccccccCC-Cccchh-----------------hhhhhcCCCCCCCCCcc--cccCCCCCCCccHH----H
Q 013948 292 QKLREERQRTGWDQTTSS-SHYSQE-----------------SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIA----S 347 (433)
Q Consensus 292 ~~~~~~~~a~~~~~~~~~-~~~~~~-----------------~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~----~ 347 (433)
...|++++|...+..+.. .+.... +..+...|++++|+..+ ++..+| +++ .
T Consensus 199 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~ 273 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-----SVAEYTVR 273 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----SSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CchHHHHH
Confidence 999999999998777652 222222 44577889999999999 888899 544 5
Q ss_pred HHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccc-cCCcHHHHHHHHHHHh
Q 013948 348 MLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFG-ENMPEDITGALRSMME 407 (433)
Q Consensus 348 a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~ 407 (433)
++..+| .++...|++++|+..|+++++++|++ ....+++..+. ..+.++....++...+
T Consensus 274 ~~~~la-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 274 SKERIC-HCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 577899 99999999999999999999999998 44444443332 3555555445554444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=184.58 Aligned_cols=225 Identities=14% Similarity=0.073 Sum_probs=191.9
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
..|++++|+..|++++...+.+ ++..+.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALT------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCC------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHhccccc------CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 4699999999999999974321 2445899999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
|++++|+.+|+++++++|+++.+++.+|.++...|++++|+. +|+++++++|++......++.+ ...|++++|...+.
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD-DLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLK 168 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHH-HHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999777766655 56688999988875
Q ss_pred ccC-CCccc----hhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 306 TTS-SSHYS----QESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 306 ~~~-~~~~~----~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
.+. ..+.. .....+...+++++|+..+ ++...|. ...+.+.++..+| .++..+|++++|+..|+++++++|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 169 QHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS-LAEHLSETNFYLG-KYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHH-HHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccccc-ccccccHHHHHHH-HHHHHcCCHHHHHHHHHHHHhCCc
Confidence 543 11211 1245566667778888888 7777771 0013378999999 999999999999999999999999
Q ss_pred Cc
Q 013948 379 GI 380 (433)
Q Consensus 379 ~~ 380 (433)
++
T Consensus 247 ~~ 248 (275)
T 1xnf_A 247 HN 248 (275)
T ss_dssp TT
T ss_pred hh
Confidence 87
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.2e-24 Score=214.18 Aligned_cols=255 Identities=14% Similarity=0.076 Sum_probs=205.4
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
|++++|+..|++++...|.+.. .....+.++..+|.++...|++++|+..|++++..+|+ ..+++.+|.++...|+
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~---~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDP---LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHHCCCcch---hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcC
Confidence 5889999999999998887621 11234667999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
+++|+..|+++++.+|+++.++..+|.++...|++++|+. .|+++++++|+++.++..++.++...|++++|...+..+
T Consensus 292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE-DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999988776
Q ss_pred CC-Cccch-----hhhhhhcCCCCCCCCCcc--cccCCCCCCC-ccHHHHHHHHhhcccccC----------CChhhHHH
Q 013948 308 SS-SHYSQ-----ESNQSTGGFRSHGTPPSF--TMPFNTNALP-TDIASMLMNMASNMPQAQ----------PSQSRQGE 368 (433)
Q Consensus 308 ~~-~~~~~-----~~~~~~~~~~~~~A~~~~--al~~~p~~~~-~~~~~a~~~la~~~~~~~----------g~~~~A~~ 368 (433)
.. .+... .+..+...|++++|+..| ++..+|.... ......+..+| .++..+ |++++|+.
T Consensus 371 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~A~~ 449 (537)
T 3fp2_A 371 KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA-TILARQSSQDPTQLDEEKFNAAIK 449 (537)
T ss_dssp HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH-HHHHHHHTC----CCHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH-HHHHHHhhccchhhhHhHHHHHHH
Confidence 52 22222 256788889999999999 7877772111 11223356667 777777 99999999
Q ss_pred HHhhhcCCCCCc-ccccccccccc-cCCcHHHHHHHHHHHhh
Q 013948 369 DSNVSGSDEPGI-RIGGNINLNFG-ENMPEDITGALRSMMEM 408 (433)
Q Consensus 369 ~~~~al~l~P~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~~ 408 (433)
.|+++++++|++ ....++...+. ..+.++....++...+.
T Consensus 450 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999998 44444333221 34555555555554443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.1e-23 Score=213.11 Aligned_cols=174 Identities=18% Similarity=0.199 Sum_probs=166.4
Q ss_pred hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 174 QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 174 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
.|+.+.++.++|.++...|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+++|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCccc
Q 013948 254 LAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFT 333 (433)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~a 333 (433)
.++..+|++++|+. +|+++++++|++..++.++|.++..+|++++|+..+++ +
T Consensus 85 ~~l~~~g~~~~A~~-~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~--------------------------A 137 (723)
T 4gyw_A 85 NTLKEMQDVQGALQ-CYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT--------------------------A 137 (723)
T ss_dssp HHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------H
T ss_pred HHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------H
Confidence 99999999999999 99999999999999999999999999999999887663 6
Q ss_pred ccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 334 MPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 334 l~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
++++| +++.++.++| .++..+|++++|++.|++++++.|+.
T Consensus 138 l~l~P-----~~~~a~~~L~-~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 138 LKLKP-----DFPDAYCNLA-HCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHCS-----CCHHHHHHHH-HHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHhCC-----CChHHHhhhh-hHHHhcccHHHHHHHHHHHHHhChhH
Confidence 78899 9999999999 99999999999999999999988775
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-22 Score=181.23 Aligned_cols=192 Identities=16% Similarity=0.128 Sum_probs=176.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
..|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|++++..+|++..++..+|.++...
T Consensus 35 ~~~~~~~A~~~~~~~l~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 35 EFGDYEKAAEAFTKAIEENKED----------AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK 104 (243)
T ss_dssp -------CCTTHHHHHTTCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HhhCHHHHHHHHHHHHHhCccc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Confidence 4799999999999999988877 889999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
|++++|+..++++++.+|.++.++..+|.++...|++++|+. .++++++..|.++.++..++.++...|++++|...+.
T Consensus 105 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALP-YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999998887765
Q ss_pred ccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 306 TTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
. ++..+| +.+.++..+| .++..+|++++|+..|+++++++|++
T Consensus 184 ~--------------------------~~~~~~-----~~~~~~~~la-~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 184 A--------------------------VTEQDP-----GHADAFYNAG-VTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp H--------------------------HHHHCT-----TCHHHHHHHH-HHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred H--------------------------HHHhCc-----ccHHHHHHHH-HHHHHccCHHHHHHHHHHHHccCcch
Confidence 3 456688 8889999999 99999999999999999999999998
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=199.98 Aligned_cols=221 Identities=14% Similarity=0.039 Sum_probs=177.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM---QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 223 (433)
.+++++|+.+|++++.++|++ +.++..+|.+++ ..+++++|++.|+++++++|++..++..+|.++.
T Consensus 151 ~~~y~~A~~~~~kal~~~p~~----------~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~ 220 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEKKPKN----------PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220 (472)
T ss_dssp TTHHHHHHHHHHHHHHHSTTC----------HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Confidence 468999999999999999988 788888888754 4577889999999999999999999999998776
Q ss_pred H----hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH---
Q 013948 224 Q----IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE--- 296 (433)
Q Consensus 224 ~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--- 296 (433)
. .+++++|+.++++++.++|.++.++..+|.++...|++++|+. .|+++++.+|+++.++..+|.++...+.
T Consensus 221 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~ 299 (472)
T 4g1t_A 221 KMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIE-LLKKALEYIPNNAYLHCQIGCCYRAKVFQVM 299 (472)
T ss_dssp HCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHH-HHHHHHHhCCChHHHHHHHHHHHHHHHHHhh
Confidence 5 4578899999999999999999999999999999999999999 9999999999999999999999875543
Q ss_pred ----------------HHHhcccccccCC-Ccc-----chhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHH
Q 013948 297 ----------------ERQRTGWDQTTSS-SHY-----SQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNM 352 (433)
Q Consensus 297 ----------------~~~a~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~l 352 (433)
.++|...+..+.. .+. ...+..|...|++++|+..| ++..+| .+.+....+..+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~--~~~~~~~~~~~~ 377 (472)
T 4g1t_A 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL--TPVAKQLLHLRY 377 (472)
T ss_dssp HC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC--CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC--CChHHHHHHHHH
Confidence 3444444443321 111 12267788889999999999 888887 111222356677
Q ss_pred hhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 353 ASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 353 a~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
|...+...|++++|+..|+++++++|++
T Consensus 378 ~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 378 GNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 7233567899999999999999998876
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=204.19 Aligned_cols=195 Identities=15% Similarity=0.061 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHH---ccCHHHHHHHHHHHHH-----h--c-------CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q 013948 178 AEIFKCQGNRVMQ---SQQYSDAIELYSFAIA-----L--C-------GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSID 240 (433)
Q Consensus 178 ~~~~~~lg~~~~~---~~~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 240 (433)
...++.+|.+++. .|++++|+..|++++. + + |.++.+++.+|.++...|++++|+..+++++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444555555444 5556666666666655 3 2 33345555666666666666666666666666
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccC-CCccch-----
Q 013948 241 IDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTS-SSHYSQ----- 314 (433)
Q Consensus 241 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~----- 314 (433)
.+|. +.++..+|.++...|++++|+. .++++++.+|.++.++..++.++...|++++|...+..+. ..+...
T Consensus 266 ~~~~-~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 343 (514)
T 2gw1_A 266 LFPR-VNSYIYMALIMADRNDSTEYYN-YFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343 (514)
T ss_dssp HCCC-HHHHHHHHHHHHTSSCCTTGGG-HHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHH
T ss_pred hCcc-HHHHHHHHHHHHHCCCHHHHHH-HHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHH
Confidence 6665 5566666666666666666666 6666666666666666666666666666555555554443 111111
Q ss_pred hhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 315 ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 315 ~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.+..+...|++++|+..| ++..+| +++.++..+| .++...|++++|+..|+++++++|++
T Consensus 344 l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~la-~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 344 LACLAYRENKFDDCETLFSEAKRKFP-----EAPEVPNFFA-EILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHTTTTTCHHHHHHHHHHHHHHST-----TCSHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcc-----cCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 134455556666665555 555555 5555555566 55556666666666666665555555
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-22 Score=198.01 Aligned_cols=183 Identities=14% Similarity=0.136 Sum_probs=154.1
Q ss_pred cchH-HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQV-DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.|++ ++|+.+|+++++.+|.+ ..+|+.+|.++...|++++|+.+|+++++++|+ ..++.++|.++..+
T Consensus 115 ~g~~~~~A~~~~~~al~~~p~~----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~ 183 (474)
T 4abn_A 115 TPDYSPEAEVLLSKAVKLEPEL----------VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQL 183 (474)
T ss_dssp SSSCCHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHh
Confidence 5788 88888888888888877 788888888888888888888888888888887 68888888888888
Q ss_pred ---------hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhhCC---CCHHHHH
Q 013948 226 ---------HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ--------GNYNDAIEKGFKKALQLDP---NNEAVKE 285 (433)
Q Consensus 226 ---------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~~al~~~p---~~~~~~~ 285 (433)
|++++|+..|+++++++|+++.+|+.+|.++..+ |++++|+. +|+++++++| +++.++.
T Consensus 184 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~ 262 (474)
T 4abn_A 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS-AYAQAEKVDRKASSNPDLHL 262 (474)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHHCGGGGGCHHHHH
T ss_pred ccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH-HHHHHHHhCCCcccCHHHHH
Confidence 8888888888888888888888888888888888 88888888 8888888888 8888888
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhh
Q 013948 286 NIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSR 365 (433)
Q Consensus 286 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~ 365 (433)
++|.++..+|++++|...+.. ++.++| +++.++..++ .++..+|++++
T Consensus 263 ~lg~~~~~~g~~~~A~~~~~~--------------------------al~l~p-----~~~~a~~~l~-~~~~~lg~~~e 310 (474)
T 4abn_A 263 NRATLHKYEESYGEALEGFSQ--------------------------AAALDP-----AWPEPQQREQ-QLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH--------------------------HHHHCT-----TCHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH--------------------------HHHhCC-----CCHHHHHHHH-HHHHHHHHHHH
Confidence 888888888888887776553 566788 8888888888 88888888888
Q ss_pred HHHHHhhh
Q 013948 366 QGEDSNVS 373 (433)
Q Consensus 366 A~~~~~~a 373 (433)
|+..+.+.
T Consensus 311 Ai~~~~~~ 318 (474)
T 4abn_A 311 LLESKGKT 318 (474)
T ss_dssp HHHHTTTC
T ss_pred HHHHhccc
Confidence 88877554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-21 Score=165.51 Aligned_cols=149 Identities=21% Similarity=0.281 Sum_probs=145.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|+++++++|++ ..++..+|.++...|++++|+..+.+++...|++..++..+|.++...+
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (184)
T 3vtx_A 18 KGDFDGAIRAYKKVLKADPNN----------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMID 87 (184)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcC
Confidence 699999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
+++.|+..+.+++.++|+++.++..+|.++..+|++++|+. +|+++++++|.++.++..+|.++..+|++++|..++++
T Consensus 88 ~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 88 EKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIE-AYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHH-HHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999988764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=177.66 Aligned_cols=187 Identities=13% Similarity=0.191 Sum_probs=166.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-------HHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-------AVYYSNRA 219 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la 219 (433)
.|++++|+.+|++++... .+ ..++..+|.++...|++++|+..|.+++.++|++ +.+++.+|
T Consensus 18 ~~~~~~A~~~~~~a~~~~-~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH-KD----------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS-CC----------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhh-cc----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 589999999999999987 54 7889999999999999999999999999998877 78999999
Q ss_pred HHHHHhhcHHHHHHHHHHHHh--------------------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013948 220 AAYTQIHQYAEAVRDCLKSID--------------------------IDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKA 273 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~a 273 (433)
.++...|++++|+..|++++. .+|.++.++..+|.++...|++++|+. +|+++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~a 165 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK-AYTEM 165 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHH-HHHHH
Confidence 999999999999999999999 666777888888888888888888888 88888
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHh
Q 013948 274 LQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMA 353 (433)
Q Consensus 274 l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la 353 (433)
++.+|.++.++..+|.++...|++++|...+.. ++..+| +++.++..+|
T Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--------------------------al~~~~-----~~~~~~~~l~ 214 (258)
T 3uq3_A 166 IKRAPEDARGYSNRAAALAKLMSFPEAIADCNK--------------------------AIEKDP-----NFVRAYIRKA 214 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------HHHHCT-----TCHHHHHHHH
T ss_pred HhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH--------------------------HHHhCH-----HHHHHHHHHH
Confidence 888888888888888888888888877776552 566789 8899999999
Q ss_pred hcccccCCChhhHHHHHhhhcCCC
Q 013948 354 SNMPQAQPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~al~l~ 377 (433)
.++..+|++++|+..|+++++++
T Consensus 215 -~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 215 -TAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp -HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=174.84 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCG-NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
+..++.+|.+++..|++++|+..|++++.++| .+..+++++|.++...|++++|+..|+++++++|+++.+++.+|.++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 57899999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCC
Q 013948 257 YAQGNYNDAIEKGFKKALQLDPNNE-------AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTP 329 (433)
Q Consensus 257 ~~~g~~~~A~~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 329 (433)
..+|++++|+. +|+++++++|+++ .++..+|.++..+|++++|...+.+
T Consensus 87 ~~~~~~~~A~~-~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~----------------------- 142 (228)
T 4i17_A 87 RDMKNNQEYIA-TLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH----------------------- 142 (228)
T ss_dssp HHTTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------
T ss_pred HHcccHHHHHH-HHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH-----------------------
Confidence 99999999999 9999999999999 5577777777777777766666542
Q ss_pred CcccccCCCCCCCcc--HHHHHHHHhhcccccCCCh---------------------------hhHHHHHhhhcCCCCCc
Q 013948 330 PSFTMPFNTNALPTD--IASMLMNMASNMPQAQPSQ---------------------------SRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 330 ~~~al~~~p~~~~~~--~~~a~~~la~~~~~~~g~~---------------------------~~A~~~~~~al~l~P~~ 380 (433)
++..+| + ++.++.++| .++..+|+. ++|+..|+++++++|++
T Consensus 143 ---al~~~p-----~~~~~~~~~~l~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 143 ---ATDVTS-----KKWKTDALYSLG-VLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp ---HTTSSC-----HHHHHHHHHHHH-HHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ---HHhcCC-----CcccHHHHHHHH-HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 677899 9 899999999 999988888 99999999999999997
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.1e-21 Score=169.25 Aligned_cols=169 Identities=15% Similarity=0.074 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHH----------------HHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSN----------------RAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
...++..|..++..|++++|+..|++++..+|+++.+|+. +|.++...|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6678899999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH--HhcccccccCCCccchhhhhh
Q 013948 242 DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER--QRTGWDQTTSSSHYSQESNQS 319 (433)
Q Consensus 242 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~ 319 (433)
+|+++.+++.+|.++...|++++|+. +|+++++++|+++.++..+|.++...|... .+...+..
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~------------- 149 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALR-MYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKK------------- 149 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------------
Confidence 99999999999999999999999999 999999999999999999999998877643 33333331
Q ss_pred hcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 320 TGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 320 ~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
++ .| .....+++.+| .++..+|++++|+.+|+++++++|+.
T Consensus 150 -------------~~--~~----~~~~~a~~~~g-~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 150 -------------LS--SP----TKMQYARYRDG-LSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp -----------------CC----CHHHHHHHHHH-HHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred -------------Hh--CC----CchhHHHHHHH-HHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 11 23 03334677888 88888999999999999999999985
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-23 Score=192.90 Aligned_cols=216 Identities=13% Similarity=0.105 Sum_probs=195.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+.+|++++..+|.+ ..++..+|.++...|++++|+..|++++..+|++..++..+|.++...|
T Consensus 34 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAAPER----------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 589999999999999998887 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRL--------------GL-AYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~l--------------g~-~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
++++|+..++++++.+|.+...+..+ +. ++...|++++|+. .++++++.+|.++.++..++.++
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT-LLHAALEMNPNDAQLHASLGVLY 182 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHH-HHHHHHHHSTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH-HHHHHHhhCCCCHHHHHHHHHHH
Confidence 99999999999999999998888877 77 7889999999999 99999999999999999999999
Q ss_pred HHHHHHHHhcccccccCC-Cccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCCh
Q 013948 292 QKLREERQRTGWDQTTSS-SHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQ 363 (433)
Q Consensus 292 ~~~~~~~~a~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~ 363 (433)
...|++++|...+..+.. .+.... +..+...|++++|+..| ++..+| +++.++..+| .++..+|++
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~-~~~~~~g~~ 256 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-----GYVRVMYNMA-VSYSNMSQY 256 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHH-HHHHHTTCH
T ss_pred HHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHH-HHHHHhccH
Confidence 999999999998877652 222222 56788889999999999 999999 9999999999 999999999
Q ss_pred hhHHHHHhhhcCCCCC
Q 013948 364 SRQGEDSNVSGSDEPG 379 (433)
Q Consensus 364 ~~A~~~~~~al~l~P~ 379 (433)
++|+..|+++++++|+
T Consensus 257 ~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999999999999
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=171.42 Aligned_cols=191 Identities=19% Similarity=0.124 Sum_probs=180.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|++++..+|.+..+++.+|.++...|
T Consensus 50 ~~~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEIDPSS----------ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp TTCTGGGHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cCChHHHHHHHHHHHhcCCCh----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh
Confidence 589999999999999998877 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 013948 227 QYAEAVRDCLKSID--IDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 227 ~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
++++|+..+++++. ..|.++.++..+|.++...|++++|+. +|+++++.+|.+..++..++.++...|++++|...+
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE-YFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999 889999999999999999999999999 999999999999999999999999999999988876
Q ss_pred cccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 305 QTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.. ++..+| +...++..++ .++...|++++|...++++++++|++
T Consensus 199 ~~--------------------------~~~~~~-----~~~~~~~~~~-~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 199 DL--------------------------FAQGGG-----QNARSLLLGI-RLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HH--------------------------HHTTSC-----CCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HH--------------------------HHHhCc-----CcHHHHHHHH-HHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 63 456778 8888999999 99999999999999999999999997
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=163.04 Aligned_cols=143 Identities=10% Similarity=0.014 Sum_probs=131.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 013948 142 DGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAA 221 (433)
Q Consensus 142 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 221 (433)
......|++++|+..+++++...|.+ +..++.+|.+|+..|+|++|+.+|+++++++|+++.+|+++|.+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~----------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 74 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQK----------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLL 74 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHH----------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCccc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33446799999999999999988876 88899999999999999999999999999999999999999999
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013948 222 YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG-FKKALQLDPNNEAVKENIRMAEQKLR 295 (433)
Q Consensus 222 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~-~~~al~~~p~~~~~~~~l~~~~~~~~ 295 (433)
+..+|++++|+.+|+++++++|+++.+++.+|.++...|++++|.. . ++++++++|+++.++..++.++...|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~-~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 75 YELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAK-YWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHH-HHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH-HHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999988776 5 59999999999999998888776544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=195.00 Aligned_cols=198 Identities=13% Similarity=0.095 Sum_probs=174.5
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQY-SDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
.+++++..+++.....|.+ +.+++.+|.++...|++ ++|+..|+++++++|+++.+|+.+|.+|...|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~----------a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 152 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVE----------AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD 152 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCC----------HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccCchh----------HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Confidence 4556666666555544444 89999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH----
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ---------GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL---- 294 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~---- 294 (433)
+++|+.+|+++++++|+ ..++..+|.++..+ |++++|+. +|+++++++|+++.+|..+|.++..+
T Consensus 153 ~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 153 VTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR-QAKLAVQMDVLDGRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp HHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999 79999999999999 99999999 99999999999999999999999999
Q ss_pred ----HHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHH
Q 013948 295 ----REERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDS 370 (433)
Q Consensus 295 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~ 370 (433)
|++++|...+.++ +.++|. ..+++.+|+++| .++..+|++++|+..|
T Consensus 231 ~~~~g~~~~A~~~~~~a--------------------------l~~~p~--~~~~~~~~~~lg-~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 231 GQNPKISQQALSAYAQA--------------------------EKVDRK--ASSNPDLHLNRA-TLHKYEESYGEALEGF 281 (474)
T ss_dssp TCCHHHHHHHHHHHHHH--------------------------HHHCGG--GGGCHHHHHHHH-HHHHHTTCHHHHHHHH
T ss_pred ccccchHHHHHHHHHHH--------------------------HHhCCC--cccCHHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 9999998887743 334440 116788999999 9999999999999999
Q ss_pred hhhcCCCCCc-ccccccc
Q 013948 371 NVSGSDEPGI-RIGGNIN 387 (433)
Q Consensus 371 ~~al~l~P~~-~~~~~~~ 387 (433)
+++++++|++ ....++.
T Consensus 282 ~~al~l~p~~~~a~~~l~ 299 (474)
T 4abn_A 282 SQAAALDPAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHH
Confidence 9999999999 4444433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-21 Score=179.56 Aligned_cols=189 Identities=9% Similarity=-0.005 Sum_probs=168.3
Q ss_pred cchHHHHHHHHHHHHHH--HhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINE--MEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ 224 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 224 (433)
.+++++|++.+++.+.. +|.+ +.+++.+|.++...|++++|+..|++ |++..++..+|.++..
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~----------~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~ 142 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTN----------TTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLK 142 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSC----------HHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHH
Confidence 57899999999999876 4776 88999999999999999999999998 8999999999999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLG--LAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTG 302 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg--~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 302 (433)
+|++++|+..++++++.+|++....+..+ .++...|++++|+. .|+++++.+|+++.++.++|.++..+|++++|..
T Consensus 143 ~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~-~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYY-IFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHH-HHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999875555444 33334589999999 9999999999999999999999999999999988
Q ss_pred cccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhh-HHHHHhhhcCCCCCcc
Q 013948 303 WDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSR-QGEDSNVSGSDEPGIR 381 (433)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~-A~~~~~~al~l~P~~~ 381 (433)
.++. ++..+| +++.++.++| .++..+|+.++ +..+++++++++|++.
T Consensus 222 ~l~~--------------------------al~~~p-----~~~~~l~~l~-~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 222 VLQE--------------------------ALDKDS-----GHPETLINLV-VLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHH--------------------------HHHHCT-----TCHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHH--------------------------HHHhCC-----CCHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 7663 677899 9999999999 99999999987 5688899999999984
Q ss_pred cc
Q 013948 382 IG 383 (433)
Q Consensus 382 ~~ 383 (433)
..
T Consensus 270 ~~ 271 (291)
T 3mkr_A 270 FI 271 (291)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=170.47 Aligned_cols=172 Identities=13% Similarity=0.186 Sum_probs=155.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..++++++..|.+ ..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|
T Consensus 70 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 70 VNELERALAFYDKALELDSSA----------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLE 139 (243)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHHHcCCcc----------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 589999999999999998877 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..++++++.+|+++.+++.+|.++...|++++|+. .++++++.+|.++.++..++.++...|++++|..++..
T Consensus 140 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 140 QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS-QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999998888877653
Q ss_pred cCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCC
Q 013948 307 TSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQP 361 (433)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g 361 (433)
++..+| +++.++..++ .+....|
T Consensus 219 --------------------------~~~~~p-----~~~~~~~~~~-~l~~~~~ 241 (243)
T 2q7f_A 219 --------------------------AIDIQP-----DHMLALHAKK-LLGHHHH 241 (243)
T ss_dssp --------------------------HHHHCT-----TCHHHHHHHT-C------
T ss_pred --------------------------HHccCc-----chHHHHHHHH-HHHhhcc
Confidence 566788 8888888888 6554443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-21 Score=179.22 Aligned_cols=194 Identities=10% Similarity=0.013 Sum_probs=172.0
Q ss_pred chHHHHHHHHHHHHH-HHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHh
Q 013948 148 SQVDKASRIFHDAIN-EMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAV-YYSNRAAAYTQI 225 (433)
Q Consensus 148 g~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~ 225 (433)
+.+++|+..|++++. +.|.+ ..+|..+|.++...|++++|+..|+++++++|.++. +|.++|.++...
T Consensus 78 ~~~~~A~~~~~rAl~~~~p~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 147 (308)
T 2ond_A 78 LFSDEAANIYERAISTLLKKN----------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 147 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCccc----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHh
Confidence 456999999999999 68887 889999999999999999999999999999999987 999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA-QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
|++++|+..|+++++.+|....+|...+.+... .|++++|+. .|+++++.+|+++.+|..++..+...|+.++|...+
T Consensus 148 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~ 226 (308)
T 2ond_A 148 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK-IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 226 (308)
T ss_dssp HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999998888877777544 799999999 999999999999999999999999999999988887
Q ss_pred cccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 305 QTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+.+... ..++| .+....|..++ .++...|+.++|...++++++..|++
T Consensus 227 ~~al~~-----------------------~~l~p----~~~~~l~~~~~-~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 227 ERVLTS-----------------------GSLPP----EKSGEIWARFL-AFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHS-----------------------SSSCG----GGCHHHHHHHH-HHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHhc-----------------------cCCCH----HHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 743211 01244 13677888889 88889999999999999999999986
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-20 Score=149.97 Aligned_cols=117 Identities=32% Similarity=0.510 Sum_probs=112.9
Q ss_pred hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 174 QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 174 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
+|..+.++..+|..++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.+|+.+|
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 254 LAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
.++..+|++++|+. +|+++++++|++..++..|+.++
T Consensus 89 ~~~~~~~~~~~A~~-~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 89 ACLVAMREWSKAQR-AYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHH-HHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999 99999999999999999998764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=162.46 Aligned_cols=192 Identities=14% Similarity=0.154 Sum_probs=164.8
Q ss_pred cchHHHHHHHHHHHHHHHh-hccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEME-KSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.|++++|+..|+++++..| .+ ..+++.+|.++...|++++|+..|++++..+|++..+++.+|.++..+
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 89 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQD----------SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDM 89 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHhccCCCC----------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHc
Confidence 5999999999999999998 55 678888999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHH
Q 013948 226 HQYAEAVRDCLKSIDIDPNYS-------KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN--NEAVKENIRMAEQKLRE 296 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~ 296 (433)
|++++|+..|+++++++|+++ .+++.+|.++...|++++|+. +|+++++++|+ ++.++..+|.++...|+
T Consensus 90 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~~~l~~~~~~~~~ 168 (228)
T 4i17_A 90 KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEE-NYKHATDVTSKKWKTDALYSLGVLFYNNGA 168 (228)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHH-HHHHHHhcCCCcccHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 679999999999999999999 99999999999 99999999999999988
Q ss_pred H--HHhcccccccCCCccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccc
Q 013948 297 E--RQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQ 358 (433)
Q Consensus 297 ~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~ 358 (433)
. +++...... .+...........+.|++|+..| +++++| +++.+...++ .+..
T Consensus 169 ~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p-----~~~~~~~~l~-~i~~ 225 (228)
T 4i17_A 169 DVLRKATPLASS---NKEKYASEKAKADAAFKKAVDYLGEAVTLSP-----NRTEIKQMQD-QVKA 225 (228)
T ss_dssp HHHHHHGGGTTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHH-HHHT
T ss_pred HHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCHHHHHHHH-HHHH
Confidence 6 443332211 11111222333346677888888 999999 8888888887 5543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-20 Score=192.50 Aligned_cols=150 Identities=20% Similarity=0.267 Sum_probs=145.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|+++++++|++ +.+++.+|.++...|++++|+..|+++++++|+++.+|+++|.++..+|
T Consensus 22 ~G~~~eAi~~~~kAl~l~P~~----------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g 91 (723)
T 4gyw_A 22 QGNIEEAVRLYRKALEVFPEF----------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 91 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 799999999999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|+++++++|+++.+|+++|.++..+|++++|+. +|+++++++|+++.++.+++.++..+|++++|...+++
T Consensus 92 ~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~-~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~k 170 (723)
T 4gyw_A 92 DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA-SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKK 170 (723)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999998888777654
Q ss_pred c
Q 013948 307 T 307 (433)
Q Consensus 307 ~ 307 (433)
+
T Consensus 171 a 171 (723)
T 4gyw_A 171 L 171 (723)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-19 Score=163.95 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=144.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIA-------------------- 206 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-------------------- 206 (433)
.|++++|+..+++++...|.... ..+....++..+|.++...|++++|+..|++++.
T Consensus 51 ~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 51 KGEYETAISTLNDAVEQGREMRA---DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKK 127 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccccc---chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHH
Confidence 58999999999999999987521 1233478999999999999999999999999999
Q ss_pred ------hcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 207 ------LCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 207 ------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
.+|.++.+++.+|.++...|++++|+..|+++++.+|.++.+++.+|.++...|++++|+. +++++++.+|++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~~~~~ 206 (258)
T 3uq3_A 128 AEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA-DCNKAIEKDPNF 206 (258)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTC
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhCHHH
Confidence 6667788999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 281 EAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
+.++..+|.++..+|++++|..++..+
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999998887743
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-19 Score=158.08 Aligned_cols=192 Identities=14% Similarity=0.026 Sum_probs=171.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI- 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~- 225 (433)
.|++++|+..+++++...|.+ ..++..+|.++...|++++|+..|.+++..+|++..++..+|.++...
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSDPKN----------ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHHHHhCccc----------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc
Confidence 589999999999999998877 789999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 013948 226 HQYAEAVRDCLKSID--IDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGW 303 (433)
Q Consensus 226 ~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 303 (433)
|++++|+..++++++ ..|.+..+++.+|.++...|++++|+. +++++++..|.++.++..++.++...|++++|...
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 169 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA-YLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYY 169 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999 677788999999999999999999999 99999999999999999999999999999998887
Q ss_pred ccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 304 DQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+..+ +..+| .+...++..++ .++...|+.++|...++.+++.+|++
T Consensus 170 ~~~~--------------------------~~~~~----~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 170 FKKY--------------------------QSRVE----VLQADDLLLGW-KIAKALGNAQAAYEYEAQLQANFPYS 215 (225)
T ss_dssp HHHH--------------------------HHHHC----SCCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHH--------------------------HHhCC----CCCHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence 6642 22333 13345666777 88889999999999999998899987
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.2e-20 Score=191.45 Aligned_cols=190 Identities=12% Similarity=0.011 Sum_probs=167.8
Q ss_pred CcchHHHHHHHHHHHH--------HHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHH
Q 013948 146 DPSQVDKASRIFHDAI--------NEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSN 217 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al--------~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 217 (433)
..|++++|++.+++++ ..+|.+ ..+++.+|.++...|++++|+..|+++++.+|++..+|++
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~----------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 472 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSES----------VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWY 472 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTC----------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccc----------hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHH
Confidence 3689999999999999 777776 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013948 218 RAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297 (433)
Q Consensus 218 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 297 (433)
+|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++ +. +|+++++++|++..++.++|.++..+|++
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~-~~~~al~~~P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HK-FYQTVWSTNDGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TC-HHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HH-HHHHHHHhCCchHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999 99 99999999999999999999999999999
Q ss_pred HHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCC--------hhhHHHH
Q 013948 298 RQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPS--------QSRQGED 369 (433)
Q Consensus 298 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~--------~~~A~~~ 369 (433)
++|...+.+ ++.++| ++..+++++| .++...++ +++|...
T Consensus 551 ~~A~~~~~~--------------------------al~l~P-----~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~A~~~ 598 (681)
T 2pzi_A 551 VGAVRTLDE--------------------------VPPTSR-----HFTTARLTSA-VTLLSGRSTSEVTEEQIRDAARR 598 (681)
T ss_dssp HHHHHHHHT--------------------------SCTTST-----THHHHHHHHH-HHTC-------CCHHHHHHHHHH
T ss_pred HHHHHHHHh--------------------------hcccCc-----ccHHHHHHHH-HHHHccCCCCCCCHHHHHHHHHH
Confidence 999887763 677899 9999999999 88877665 4555555
Q ss_pred HhhhcCCCCC
Q 013948 370 SNVSGSDEPG 379 (433)
Q Consensus 370 ~~~al~l~P~ 379 (433)
+.+....+|.
T Consensus 599 l~~~~~~~~~ 608 (681)
T 2pzi_A 599 VEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTT
T ss_pred HhhCCCCcHH
Confidence 5444333333
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.2e-20 Score=169.42 Aligned_cols=202 Identities=15% Similarity=-0.008 Sum_probs=166.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++..+|.+ ..++..+|.++...|++++|+.+|++++.++|++..+++.+|.++...|
T Consensus 56 ~~~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 125 (275)
T 1xnf_A 56 LGLRALARNDFSQALAIRPDM----------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 125 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHcCCCc----------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhc
Confidence 589999999999999999887 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|+++++++|++......++.+ ...|++++|+. .+++++...|.+...+. ++.++...++.++|...+..
T Consensus 126 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~ 202 (275)
T 1xnf_A 126 RDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKE-VLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKA 202 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHH-HHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHH-HHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHH
Confidence 99999999999999999999777776655 66799999999 99999999998876655 55555555556677766665
Q ss_pred cCCCccc----------hhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHH
Q 013948 307 TSSSHYS----------QESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDS 370 (433)
Q Consensus 307 ~~~~~~~----------~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~ 370 (433)
+...... ..+..|...|++++|+..| ++..+| ++...+ + .++..+|++++|+.+|
T Consensus 203 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~---~-~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 203 DATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV-----HNFVEH---R-YALLELSLLGQDQDDL 269 (275)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-----TTCHHH---H-HHHHHHHHHHHC----
T ss_pred HhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc-----hhHHHH---H-HHHHHHHHHHhhHHHH
Confidence 5432221 1156788889999999999 999999 654433 5 5577889999999887
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-20 Score=172.00 Aligned_cols=219 Identities=13% Similarity=0.075 Sum_probs=181.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----AVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 222 (433)
.|++++|+..|+++++.+|.+ ..+++.+|.++...|++++|+..|++++. .|.+ ..+++.+|.++
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNS----------PYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCC----------STTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHH
Confidence 589999999999999999887 67899999999999999999999999999 4444 45699999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHHHHHHHHhc
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR-MAEQKLREERQRT 301 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~~a~ 301 (433)
...|++++|+.+|+++++++|.++.++..+|.++...|++++|+. +|+++++++|.++.++..+| .++. .+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQ-YMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH-HHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHH-HHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHH
Confidence 999999999999999999999999999999999999999999999 99999999999999999999 5554 44777776
Q ss_pred ccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCC---hhhHHHHHhhhcCCC-
Q 013948 302 GWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPS---QSRQGEDSNVSGSDE- 377 (433)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~---~~~A~~~~~~al~l~- 377 (433)
..+.. ++..+| +++.++..+| .++..+|+ +++|+..|++++++.
T Consensus 163 ~~~~~--------------------------a~~~~p-----~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 163 SSFVK--------------------------VLELKP-----NIYIGYLWRA-RANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp HHHHH--------------------------HHHHST-----TCHHHHHHHH-HHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HHHHH--------------------------HHHhCc-----cchHHHHHHH-HHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 65542 677889 8899999999 99999999 999999999999886
Q ss_pred --CCc------ccccccccccc-cCCcHHHHHHHHHHHhhcC
Q 013948 378 --PGI------RIGGNINLNFG-ENMPEDITGALRSMMEMFS 410 (433)
Q Consensus 378 --P~~------~~~~~~~~~l~-~~~~~~~~~a~~~~~~~~~ 410 (433)
|+. .....++.... ..+.++....++...+..+
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 442 11112221111 4566666666666665543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-21 Score=187.55 Aligned_cols=227 Identities=13% Similarity=0.071 Sum_probs=168.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------cCCCHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL------CGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~ 220 (433)
.|++++|+.++++++....... ..+....++..+|.++...|++++|+.+|.+++.+ .|....++.++|.
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 174 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMN----DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGN 174 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcc----CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 4788888888888888753321 22444778888888888888888888888888887 4555678888888
Q ss_pred HHHHhhc-----------------HHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Q 013948 221 AYTQIHQ-----------------YAEAVRDCLKSIDID------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD 277 (433)
Q Consensus 221 ~~~~~~~-----------------~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~ 277 (433)
++...|+ +++|+.++++++++. +....++..+|.++...|++++|+. ++++++++.
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~ 253 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIE-HHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHH-HHHHHHHHH
Confidence 8888888 888888888887763 3345678888888888888888888 888888876
Q ss_pred CCCHH------HHHHHHHHHHHHHHHHHhcccccccCCCcc------------chhhhhhhcCCCCCCCCCcc--cccCC
Q 013948 278 PNNEA------VKENIRMAEQKLREERQRTGWDQTTSSSHY------------SQESNQSTGGFRSHGTPPSF--TMPFN 337 (433)
Q Consensus 278 p~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~--al~~~ 337 (433)
|.... ++..++.++...|++++|..++..+..... ...+..|...|++++|+..+ ++...
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 64332 778888888888888888887665542111 01145677778888888888 66554
Q ss_pred CC-CCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 338 TN-ALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 338 p~-~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
+. ..+.....++..+| .++..+|++++|+..|++++++.+.
T Consensus 334 ~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 334 QELGDRIGEARACWSLG-NAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHCCChHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHhh
Confidence 31 01125577999999 9999999999999999999887655
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-19 Score=166.15 Aligned_cols=189 Identities=11% Similarity=0.065 Sum_probs=168.7
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRV----MQS---QQYSDAIELYSFAIALCGNNAVYYSNRAAA 221 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 221 (433)
++++++.++.++|..+|++ ..+|+.++.++ ... +++++++.++.++++.+|.+..+|+.++.+
T Consensus 84 ~~~eeL~~~~~~L~~nPk~----------y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~v 153 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKN----------YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWL 153 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTC----------CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCccc----------HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8999999999999999998 89999999998 666 789999999999999999999999999999
Q ss_pred HHHhhcHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 222 YTQIHQYA--EAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN------YNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 222 ~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
+...|.++ ++++++.++++.+|.|..+|..++.++...+. ++++++ ++.+++..+|++..+|..++.++..
T Consensus 154 l~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~-~~~~aI~~~p~n~SaW~y~~~ll~~ 232 (306)
T 3dra_A 154 VDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELN-YVKDKIVKCPQNPSTWNYLLGIHER 232 (306)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHH-HHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHH-HHHHHHHhCCCCccHHHHHHHHHHh
Confidence 99999998 99999999999999999999999999999988 999999 9999999999999999999999988
Q ss_pred HHHHHHhcc-cccccCCCccchhhhhhhcCCCCCCCCCcccccC---CCCCCCccHHHHHHHHhhcccccCCChhhHHHH
Q 013948 294 LREERQRTG-WDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPF---NTNALPTDIASMLMNMASNMPQAQPSQSRQGED 369 (433)
Q Consensus 294 ~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~---~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~ 369 (433)
.|+...+.. +... .+.+ +| ..+.++..++ .++..+|+.++|+++
T Consensus 233 ~~~~~~~~~~~~~~--------------------------~~~~~~~~~-----~s~~al~~la-~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 233 FDRSITQLEEFSLQ--------------------------FVDLEKDQV-----TSSFALETLA-KIYTQQKKYNESRTV 280 (306)
T ss_dssp TTCCGGGGHHHHHT--------------------------TEEGGGTEE-----SCHHHHHHHH-HHHHHTTCHHHHHHH
T ss_pred cCCChHHHHHHHHH--------------------------HHhccCCCC-----CCHHHHHHHH-HHHHccCCHHHHHHH
Confidence 776332221 2221 2222 36 7889999999 999999999999999
Q ss_pred HhhhcC-CCCCc
Q 013948 370 SNVSGS-DEPGI 380 (433)
Q Consensus 370 ~~~al~-l~P~~ 380 (433)
|+++.+ .||..
T Consensus 281 ~~~l~~~~Dpir 292 (306)
T 3dra_A 281 YDLLKSKYNPIR 292 (306)
T ss_dssp HHHHHHTTCGGG
T ss_pred HHHHHhccChHH
Confidence 999986 89986
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.2e-21 Score=185.06 Aligned_cols=227 Identities=15% Similarity=0.061 Sum_probs=162.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|+.++++++...+... ..+....++..+|.++...|++++|+..|.+++.+.|.. ..++..+|.
T Consensus 60 ~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 60 LHDYAKALEYHHHDLTLARTIG----DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 4778888888888877754431 234456777888888888888888888888887775543 457778888
Q ss_pred HHHHhhc--------------------HHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013948 221 AYTQIHQ--------------------YAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 221 ~~~~~~~--------------------~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al 274 (433)
++...|+ +++|+..+.+++.+ .|....++..+|.++...|++++|+. ++++++
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al 214 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI-AHEQRL 214 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH-HHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH-HHHHHH
Confidence 8888888 88888888887776 33445677788888888888888888 888887
Q ss_pred hhCCCCHH------HHHHHHHHHHHHHHHHHhcccccccCCCcc------------chhhhhhhcCCCCCCCCCcc--cc
Q 013948 275 QLDPNNEA------VKENIRMAEQKLREERQRTGWDQTTSSSHY------------SQESNQSTGGFRSHGTPPSF--TM 334 (433)
Q Consensus 275 ~~~p~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~--al 334 (433)
++.|.... ++..+|.++...|++++|..++..+..... ...+..|...|++++|+..| ++
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 76554332 777788888888888877777665442110 01145566778888888777 55
Q ss_pred cCCCC-CCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 335 PFNTN-ALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 335 ~~~p~-~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
...+. ..+...+.++..+| .++..+|++++|+.+|++++++.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLG-NAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 55331 01125578999999 9999999999999999999987544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-21 Score=178.96 Aligned_cols=227 Identities=15% Similarity=0.066 Sum_probs=166.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|+.++++++...+... ..+....++..+|.++...|++++|+..|.+++.+.+.. ..++..+|.
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 131 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIG----DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 131 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhccc----ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 5889999999999988865432 234457888999999999999999999999998876543 448889999
Q ss_pred HHHHhhc--------------------HHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013948 221 AYTQIHQ--------------------YAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 221 ~~~~~~~--------------------~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al 274 (433)
++...|+ +++|+..+++++.+ .+....++..+|.++...|++++|+. ++++++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~ 210 (338)
T 3ro2_A 132 VYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI-AHEQRL 210 (338)
T ss_dssp HHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHH
T ss_pred HHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHH
Confidence 9999999 99999999998876 33446788889999999999999999 999998
Q ss_pred hhCCCC------HHHHHHHHHHHHHHHHHHHhcccccccCCCccc------------hhhhhhhcCCCCCCCCCcc--cc
Q 013948 275 QLDPNN------EAVKENIRMAEQKLREERQRTGWDQTTSSSHYS------------QESNQSTGGFRSHGTPPSF--TM 334 (433)
Q Consensus 275 ~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~~~~~~~A~~~~--al 334 (433)
++.+.. ..++..++.++...|++++|..++..+...... ..+..|...|++++|+..+ ++
T Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 211 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 875542 237888999999999999988887655421110 0134556667777777766 54
Q ss_pred cCCCC-CCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 335 PFNTN-ALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 335 ~~~p~-~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
...+. ..+.....++..+| .++..+|++++|...+++++++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLG-NAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHhcCCcHHHHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHHh
Confidence 44331 01123455777777 7777777777777777777776654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=159.23 Aligned_cols=202 Identities=12% Similarity=0.070 Sum_probs=174.8
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGL 254 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 254 (433)
+..+.+++.+|.++...|++++|+..|++++..+|++..+++.+|.++...|++++|+..+++++..+|.+..++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 44588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-CCHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCc
Q 013948 255 AYYAQ-GNYNDAIEKGFKKALQ--LDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPS 331 (433)
Q Consensus 255 ~~~~~-g~~~~A~~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 331 (433)
++... |++++|+. +++++++ ..|.+..++..++.++...|++++|...+..
T Consensus 85 ~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------------------------- 138 (225)
T 2vq2_A 85 FLCGRLNRPAESMA-YFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKR------------------------- 138 (225)
T ss_dssp HHHTTTCCHHHHHH-HHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------
T ss_pred HHHHhcCcHHHHHH-HHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------
Confidence 99999 99999999 9999999 6777789999999999999999998887653
Q ss_pred ccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC-Ccccccccccccc--cCCcHHHHHHHHHHHhh
Q 013948 332 FTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP-GIRIGGNINLNFG--ENMPEDITGALRSMMEM 408 (433)
Q Consensus 332 ~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~~~~l~--~~~~~~~~~a~~~~~~~ 408 (433)
++..+| +++.++..+| .++...|++++|+..++++++.+| ++......+..+. ....+.....++.+.+.
T Consensus 139 -~~~~~~-----~~~~~~~~la-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 139 -SLAAQP-----QFPPAFKELA-RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp -HHHHST-----TCHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHhCC-----CCchHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 456788 8889999999 999999999999999999999999 7722222232221 45555555555555544
Q ss_pred c
Q 013948 409 F 409 (433)
Q Consensus 409 ~ 409 (433)
.
T Consensus 212 ~ 212 (225)
T 2vq2_A 212 F 212 (225)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-19 Score=164.12 Aligned_cols=202 Identities=12% Similarity=0.065 Sum_probs=165.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|+..|++++.+.+..+ ..+..+.++..+|.++...|++++|+.+|++++.+.|.. ..++.++|.
T Consensus 50 ~g~~~~A~~~~~~al~~~~~~~----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 50 RKELNLAGDSFLKAADYQKKAG----NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp TTCTHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6999999999999999987652 223457899999999999999999999999999998754 568999999
Q ss_pred HHHHh-hcHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH-------HHHH
Q 013948 221 AYTQI-HQYAEAVRDCLKSIDIDPNY------SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA-------VKEN 286 (433)
Q Consensus 221 ~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~-------~~~~ 286 (433)
+|... |++++|+.+|++++++.|.. ..++..+|.++..+|+|++|+. +|++++++.|++.. ++.+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD-IYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHhcCCcccHHHHHHHHH
Confidence 99996 99999999999999998754 5689999999999999999999 99999999987653 6788
Q ss_pred HHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccc--cCCChh
Q 013948 287 IRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQ--AQPSQS 364 (433)
Q Consensus 287 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~--~~g~~~ 364 (433)
+|.++..+|++++|...+.. ++.++|..........+..++ ..+. ..++++
T Consensus 205 lg~~~~~~g~~~~A~~~~~~--------------------------al~l~p~~~~~~~~~~l~~l~-~~~~~~~~~~~~ 257 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQE--------------------------GQSEDPNFADSRESNFLKSLI-DAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHG--------------------------GGCC---------HHHHHHHH-HHHHTTCTTTHH
T ss_pred HHHHHHHcCCHHHHHHHHHH--------------------------HHhhCCCCCCcHHHHHHHHHH-HHHHcCCHHHHH
Confidence 99999999999999888764 455666211112223445555 4443 678899
Q ss_pred hHHHHHhhhcCCCCCc
Q 013948 365 RQGEDSNVSGSDEPGI 380 (433)
Q Consensus 365 ~A~~~~~~al~l~P~~ 380 (433)
+|+..|.+++.++|..
T Consensus 258 ~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHTTSSCCCHHH
T ss_pred HHHHHhccCCccHHHH
Confidence 9999999999999985
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-19 Score=160.97 Aligned_cols=199 Identities=14% Similarity=0.090 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+.+++.+|.++...|++++|+..|++++..+|++..+++.+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCccccc
Q 013948 258 AQGNYNDAIEKGFKKALQ--LDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMP 335 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~ 335 (433)
..|++++|+. +++++++ ..|.+..++..++.++...|++++|..++.. ++.
T Consensus 117 ~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--------------------------~~~ 169 (252)
T 2ho1_A 117 EQKRYEEAYQ-RLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK--------------------------SLR 169 (252)
T ss_dssp HTTCHHHHHH-HHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------HHH
T ss_pred HHhHHHHHHH-HHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------HHh
Confidence 9999999999 9999999 8899999999999999999999998887663 456
Q ss_pred CCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccc-cCCcHHHHHHHHHHHhhc
Q 013948 336 FNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFG-ENMPEDITGALRSMMEMF 409 (433)
Q Consensus 336 ~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~~~ 409 (433)
.+| +++.++..+| .++..+|++++|+..++++++.+|++ .....+...+. ..+.++....++.+.+..
T Consensus 170 ~~~-----~~~~~~~~la-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 170 LNR-----NQPSVALEMA-DLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HCS-----CCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCc-----ccHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 678 8889999999 99999999999999999999999988 33332222221 456666666666666554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=154.28 Aligned_cols=172 Identities=14% Similarity=0.101 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
....++.+|.++...|++++|+..|++++..+|.+..+++.+|.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccC
Q 013948 257 YAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPF 336 (433)
Q Consensus 257 ~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~ 336 (433)
...|++++|+. +++++++.+|.++.++..++.++...|++++|...+.. ++..
T Consensus 87 ~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~--------------------------~~~~ 139 (186)
T 3as5_A 87 VQVQKYDLAVP-LLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI--------------------------ALGL 139 (186)
T ss_dssp HHHTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------HHHH
T ss_pred HHhcCHHHHHH-HHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH--------------------------HHhc
Confidence 99999999999 99999999999999999999999999999998887663 4556
Q ss_pred CCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCcc
Q 013948 337 NTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGIR 381 (433)
Q Consensus 337 ~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~~ 381 (433)
+| +.+.++..+| .++..+|++++|+..++++++++|++.
T Consensus 140 ~~-----~~~~~~~~la-~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 140 RP-----NEGKVHRAIA-FSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp CT-----TCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred Cc-----cchHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 78 8889999999 999999999999999999999999873
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=168.03 Aligned_cols=224 Identities=18% Similarity=0.230 Sum_probs=181.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------CCCHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC--------GNNAVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l 218 (433)
.|++++|+.++++++++..... ....+....++..+|.++...|++++|+..|++++... |....++..+
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 117 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTS--GHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNL 117 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 6999999999999999754421 01134558899999999999999999999999999883 5557899999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--------CCCCHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDID--------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL--------DPNNEA 282 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~--------~p~~~~ 282 (433)
|.++...|++++|+.++++++.+. |....++..+|.++...|++++|+. +|++++++ .|....
T Consensus 118 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~ 196 (311)
T 3nf1_A 118 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY-YYQRALEIYQTKLGPDDPNVAK 196 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHHHHHTSCTTCHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999884 6677899999999999999999999 99999998 677788
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCccc---------------hh------hhhhhcCCCCCCCCCcc--cccCCCC
Q 013948 283 VKENIRMAEQKLREERQRTGWDQTTSSSHYS---------------QE------SNQSTGGFRSHGTPPSF--TMPFNTN 339 (433)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------~~------~~~~~~~~~~~~A~~~~--al~~~p~ 339 (433)
++..++.++...|++++|..++..+...... .. ...+...+.+.+++..+ ++..+|
T Consensus 197 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~- 275 (311)
T 3nf1_A 197 TKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP- 275 (311)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc-
Confidence 9999999999999999999987766531110 00 12344458888888888 777888
Q ss_pred CCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 340 ALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 340 ~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
..+.++..+| .++..+|++++|+..|++++++.|+
T Consensus 276 ----~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 276 ----TVTTTLKNLG-ALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----HHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred ----hHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999 9999999999999999999998775
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-20 Score=157.19 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=131.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 013948 183 CQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNY 262 (433)
Q Consensus 183 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 262 (433)
.||.++...|++++|+..+++++..+|+++..++.+|.+|...|+|++|+.+|+++++++|+++.+|+.+|.++...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 36888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccc-ccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCC
Q 013948 263 NDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGW-DQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNAL 341 (433)
Q Consensus 263 ~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~ 341 (433)
++|+. +|+++++++|+++.++..+|.++...|+++++... .++ ++.++|
T Consensus 82 ~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~--------------------------al~l~P--- 131 (150)
T 4ga2_A 82 DKAVE-CYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVER--------------------------AAKLFP--- 131 (150)
T ss_dssp HHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHH--------------------------HHHHST---
T ss_pred HHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH--------------------------HHHhCc---
Confidence 99999 99999999999999999999999999887655443 221 688899
Q ss_pred CccHHHHHHHHhhcccccCCC
Q 013948 342 PTDIASMLMNMASNMPQAQPS 362 (433)
Q Consensus 342 ~~~~~~a~~~la~~~~~~~g~ 362 (433)
+++.++..++ .++..+|+
T Consensus 132 --~~~~~~~l~~-~ll~~~G~ 149 (150)
T 4ga2_A 132 --GSPAVYKLKE-QLLDCEGE 149 (150)
T ss_dssp --TCHHHHHHHH-HHHHTCCC
T ss_pred --CCHHHHHHHH-HHHHHhCc
Confidence 9999999999 88888775
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=164.90 Aligned_cols=188 Identities=16% Similarity=0.086 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---cHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN---YSKAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~ 251 (433)
+..++.+|..++..|+|++|+..|++++..+|++ +.+++.+|.++..+|++++|+..|+++++++|+ .+.+++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 8899999999999999999999999999999999 899999999999999999999999999999885 4789999
Q ss_pred HHHHHHH--------cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCC
Q 013948 252 LGLAYYA--------QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGF 323 (433)
Q Consensus 252 lg~~~~~--------~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 323 (433)
+|.++.. .|++++|+. .|+++++.+|+++.+...+..+....+....+ ....+..|...|
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~-----------~~~la~~~~~~g 162 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIE-AFQLFIDRYPNHELVDDATQKIRELRAKLARK-----------QYEAARLYERRE 162 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHH-HHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccchhHHHHHH-HHHHHHHHCcCchhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHcc
Confidence 9999999 999999999 99999999999877764333222222222111 011123344444
Q ss_pred CCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccC----------CChhhHHHHHhhhcCCCCCc
Q 013948 324 RSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQ----------PSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 324 ~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~----------g~~~~A~~~~~~al~l~P~~ 380 (433)
++++|+..| ++...|+ ....+.+++.+| .++..+ |++++|+..|+++++..|++
T Consensus 163 ~~~~A~~~~~~~l~~~p~--~~~~~~a~~~l~-~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 163 LYEAAAVTYEAVFDAYPD--TPWADDALVGAM-RAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp CHHHHHHHHHHHHHHCTT--STTHHHHHHHHH-HHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHCCC--CchHHHHHHHHH-HHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 444555555 6667770 013788999999 888876 89999999999999999997
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-20 Score=173.68 Aligned_cols=238 Identities=9% Similarity=-0.046 Sum_probs=191.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++.+|+..+++.....|.+ ..++...++.++...|+++.|+..++. .+|.+..++..++..+...+
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~---------~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPER---------DVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHH---------HHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHhcccCCchh---------hHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCC
Confidence 589999999888877766654 245777888999999999999988765 25666778888888999999
Q ss_pred cHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 013948 227 QYAEAVRDCLKSIDI--DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 227 ~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
++++|+..+++++.. +|+++.+++.+|.++...|++++|+. ++++ |.++.++..++.++..+|+.++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~-~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR-TLHQ-----GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHH-HHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHH-HHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998876 59999999999999999999999999 8887 889999999999999999999998887
Q ss_pred cccCC-Cccchh-------hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhc
Q 013948 305 QTTSS-SHYSQE-------SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSG 374 (433)
Q Consensus 305 ~~~~~-~~~~~~-------~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al 374 (433)
+.+.. .|.... ..++...|++++|+..| ++..+| +++.+++++| .++..+|++++|+..|++++
T Consensus 154 ~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-----~~~~~~~~la-~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 154 KKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-----PTLLLLNGQA-ACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-----CCHHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-----CcHHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 77652 222211 23445668999999999 888999 9999999999 99999999999999999999
Q ss_pred CCCCCc-ccccccccccc--cCCcHHHHHHHHHHHhh
Q 013948 375 SDEPGI-RIGGNINLNFG--ENMPEDITGALRSMMEM 408 (433)
Q Consensus 375 ~l~P~~-~~~~~~~~~l~--~~~~~~~~~a~~~~~~~ 408 (433)
+++|++ .++.+++..+. +...+.....++.+.+.
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999 66666664442 33333344455555544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=165.14 Aligned_cols=223 Identities=16% Similarity=0.203 Sum_probs=177.4
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------CCCHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC--------GNNAVYYSN 217 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 217 (433)
..|++++|+.+|+++++...... ....+....++..+|.++...|++++|+..|++++.+. |....++.+
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTS--GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 36899999999999999765431 11235668899999999999999999999999999884 556789999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--------CCCCH
Q 013948 218 RAAAYTQIHQYAEAVRDCLKSIDI--------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL--------DPNNE 281 (433)
Q Consensus 218 la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~--------~p~~~ 281 (433)
+|.++...|++++|+.+|++++.+ +|....++..+|.++...|++++|+. ++++++++ .|...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY-YYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhcCCCCHHHH
Confidence 999999999999999999999998 57778999999999999999999999 99999998 77778
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCccch---------------hhhhhhcC------CCCCCCCCcc--cccCCC
Q 013948 282 AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQ---------------ESNQSTGG------FRSHGTPPSF--TMPFNT 338 (433)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~~------~~~~~A~~~~--al~~~p 338 (433)
.++..+|.++...|++++|...+..+....... ....+... ..+..+...+ .....|
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 899999999999999999999877655321100 01122222 3344444444 334556
Q ss_pred CCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCC
Q 013948 339 NALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 339 ~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~ 377 (433)
..+.++..+| .++..+|++++|+..|+++++..
T Consensus 250 -----~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 250 -----TVNTTLRSLG-ALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp -----HHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhh
Confidence 8999999999 99999999999999999998753
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-19 Score=163.45 Aligned_cols=207 Identities=14% Similarity=0.103 Sum_probs=181.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ----SQQYSDAIELYSFAIALCGNNAVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 222 (433)
.|++++|+.+|+++++ |.+ ..+++.+|.++.. .+++++|+..|+++++.+ ++.+++++|.++
T Consensus 19 ~~~~~~A~~~~~~a~~--~~~----------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~ 84 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACD--LKE----------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLY 84 (273)
T ss_dssp TTCHHHHHHHHHHHHH--TTC----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CCC----------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Confidence 5899999999999998 444 6789999999999 999999999999999885 899999999999
Q ss_pred HH----hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 013948 223 TQ----IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA----QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK- 293 (433)
Q Consensus 223 ~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~- 293 (433)
.. .+++++|+.+|+++++.+ ++.+++.+|.+|.. .+++++|+. +|+++++.+ ++.++..++.++..
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~-~~~~a~~~~--~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVE-YFTKACDLN--DGDGCTILGSLYDAG 159 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHH-HHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHH-HHHHHHhcC--cHHHHHHHHHHHHcC
Confidence 99 999999999999999984 89999999999999 999999999 999999976 68899999999998
Q ss_pred ---HHHHHHhcccccccCCCccc----hhhhhhhc----CCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhccccc-
Q 013948 294 ---LREERQRTGWDQTTSSSHYS----QESNQSTG----GFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQA- 359 (433)
Q Consensus 294 ---~~~~~~a~~~~~~~~~~~~~----~~~~~~~~----~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~- 359 (433)
.+++++|..+++.+...... ..+..|.. .+++++|+..| ++..+| +.+++.+| .++..
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~l~-~~~~~g 231 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-------GGGCFNLG-AMQYNG 231 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHH-HHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-------HHHHHHHH-HHHHcC
Confidence 88999999988876532211 12566777 78999999888 666655 46788888 88888
Q ss_pred ---CCChhhHHHHHhhhcCCCCCc
Q 013948 360 ---QPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 360 ---~g~~~~A~~~~~~al~l~P~~ 380 (433)
.+++++|+.+|++++++.|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 899999999999999988886
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-18 Score=157.81 Aligned_cols=150 Identities=19% Similarity=0.170 Sum_probs=134.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHhcCCCHHHH---
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ--------SQQYSDAIELYSFAIALCGNNAVYY--- 215 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~--- 215 (433)
.|++++|+..|++++..+|.+ +....+++.+|.+++. .|++++|+..|++++..+|++..++
T Consensus 65 ~~~~~~A~~~~~~~l~~~p~~-------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 137 (261)
T 3qky_A 65 NKEYLLAASEYERFIQIYQID-------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDAT 137 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC-------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred hCcHHHHHHHHHHHHHHCCCC-------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHH
Confidence 589999999999999998865 4457899999999999 9999999999999999999986655
Q ss_pred --------------HHHHHHHHHhhcHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHc----------CCHHHHHHH
Q 013948 216 --------------SNRAAAYTQIHQYAEAVRDCLKSIDIDPN---YSKAYSRLGLAYYAQ----------GNYNDAIEK 268 (433)
Q Consensus 216 --------------~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~----------g~~~~A~~~ 268 (433)
+.+|.+|...|++++|+..|+++++..|+ .+.+++.+|.++..+ |++++|+.
T Consensus 138 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~- 216 (261)
T 3qky_A 138 QKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVE- 216 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHH-
Confidence 88999999999999999999999999998 578999999999987 99999999
Q ss_pred HHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHhcccc
Q 013948 269 GFKKALQLDPNNE---AVKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 269 ~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
.|+++++..|+++ .+...++.++..+++++.+....
T Consensus 217 ~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 255 (261)
T 3qky_A 217 LYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDASLA 255 (261)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 9999999999985 56677888888888887765543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=164.80 Aligned_cols=218 Identities=11% Similarity=0.032 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH-------ccCH-------HHHHHHHHHHHH-hcCCCHHHH
Q 013948 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ-------SQQY-------SDAIELYSFAIA-LCGNNAVYY 215 (433)
Q Consensus 151 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~ 215 (433)
++|+..|++++..+|.+ +.+|+.+|..+.. .|++ ++|+..|++|+. ++|++..+|
T Consensus 33 ~~a~~~~~~al~~~p~~----------~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHH----------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 102 (308)
T ss_dssp HHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHH
Confidence 78999999999999998 8999999998864 5885 999999999999 799999999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 013948 216 SNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSK-AYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK- 293 (433)
Q Consensus 216 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~- 293 (433)
..+|.++...|++++|...|+++++++|.++. +|..+|.++...|++++|+. .|+++++.+|.+..++...+.+...
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~a~~~~p~~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM-IFKKAREDARTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH-HHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987 99999999999999999999 9999999999988887765555332
Q ss_pred HHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhh
Q 013948 294 LREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVS 373 (433)
Q Consensus 294 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~a 373 (433)
.|+.++|...++. ++..+| +++.+|..++ .++..+|++++|+..|+++
T Consensus 182 ~~~~~~A~~~~~~--------------------------al~~~p-----~~~~~~~~~~-~~~~~~g~~~~A~~~~~~a 229 (308)
T 2ond_A 182 SKDKSVAFKIFEL--------------------------GLKKYG-----DIPEYVLAYI-DYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp SCCHHHHHHHHHH--------------------------HHHHHT-----TCHHHHHHHH-HHHHTTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--------------------------HHHhCC-----CcHHHHHHHH-HHHHHCCCHHHHHHHHHHH
Confidence 4566666555442 677889 8999999999 9999999999999999999
Q ss_pred cCC---CCCc--ccccccccccc-cCCcHHHHHHHHHHHhhcCC
Q 013948 374 GSD---EPGI--RIGGNINLNFG-ENMPEDITGALRSMMEMFSG 411 (433)
Q Consensus 374 l~l---~P~~--~~~~~~~~~l~-~~~~~~~~~a~~~~~~~~~~ 411 (433)
+.. +|+. ..+...+.... ..+.+.....+.+..+.+..
T Consensus 230 l~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 230 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 995 6653 23322221111 34556666677777766643
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-19 Score=188.06 Aligned_cols=194 Identities=13% Similarity=0.037 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH--------HhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAI--------ALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAY 249 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 249 (433)
+.+++..| ...|++++|++.|++++ ..+|++..+++.+|.++..+|++++|+..|+++++++|+++.+|
T Consensus 394 ~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 470 (681)
T 2pzi_A 394 VAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLV 470 (681)
T ss_dssp TTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred cchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHH
Confidence 45556555 78899999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCC
Q 013948 250 SRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTP 329 (433)
Q Consensus 250 ~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 329 (433)
+.+|.++..+|++++|+. .|+++++++|+++.++.++|.++..+|++++ ...+.+
T Consensus 471 ~~lg~~~~~~g~~~~A~~-~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~----------------------- 525 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATK-HFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQT----------------------- 525 (681)
T ss_dssp HHHHHHHHHHTCHHHHHH-HHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHH-----------------------
T ss_pred HHHHHHHHHcCCHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHH-----------------------
Confidence 999999999999999999 9999999999999999999999888877665 444331
Q ss_pred CcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccc--c----CCcHHHHHHH
Q 013948 330 PSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFG--E----NMPEDITGAL 402 (433)
Q Consensus 330 ~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~--~----~~~~~~~~a~ 402 (433)
++.++| +++.+++++| .++..+|++++|+.+|+++++++|++ .++.++...+. . .+.+++.++.
T Consensus 526 ---al~~~P-----~~~~a~~~lg-~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 526 ---VWSTND-----GVISAAFGLA-RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp ---HHHHCT-----TCHHHHHHHH-HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred ---HHHhCC-----chHHHHHHHH-HHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 788999 9999999999 99999999999999999999999999 55555544431 1 2246666666
Q ss_pred HHHHhh
Q 013948 403 RSMMEM 408 (433)
Q Consensus 403 ~~~~~~ 408 (433)
+.+.+.
T Consensus 597 ~~l~~~ 602 (681)
T 2pzi_A 597 RRVEAL 602 (681)
T ss_dssp HHHHTS
T ss_pred HHHhhC
Confidence 666543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-19 Score=148.68 Aligned_cols=121 Identities=13% Similarity=0.059 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHH
Q 013948 150 VDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYA 229 (433)
Q Consensus 150 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 229 (433)
+-.+-..+++++.++|.+ ..+++.+|.+++..|++++|+..|++++.++|+++.+|+++|.++..+|+++
T Consensus 18 ~~~~~~~l~~al~l~p~~----------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 87 (151)
T 3gyz_A 18 AINSGATLKDINAIPDDM----------MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQ 87 (151)
T ss_dssp HHHTSCCTGGGCCSCHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCCHHHHhCCCHHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHH
Confidence 333444566677776766 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 230 EAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 230 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
+|+.+|+++++++|+++.+|+++|.++..+|++++|+. +|++++++.|+.+
T Consensus 88 ~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~-~~~~al~l~~~~~ 138 (151)
T 3gyz_A 88 QAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKE-CFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCCCHH
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999 9999999999865
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-18 Score=151.21 Aligned_cols=148 Identities=16% Similarity=0.094 Sum_probs=130.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHHhcCC
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKC----------------QGNRVMQSQQYSDAIELYSFAIALCGN 210 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~----------------lg~~~~~~~~~~~A~~~~~~al~~~p~ 210 (433)
.|++++|+..|++++..+|.+ +.+++. +|.++...|++++|+..|+++++++|+
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALNIDR----------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCHHH----------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHhCCCC----------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 499999999999999999987 778888 999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013948 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN--YNDAIEKGFKKALQLDPNNEAVKENIR 288 (433)
Q Consensus 211 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~~al~~~p~~~~~~~~l~ 288 (433)
++.+++++|.++...|++++|+.+|+++++++|+++.+++.+|.+++..|+ ...+.. .+++++...| ...+++.+|
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~a~~~~g 164 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET-DYKKLSSPTK-MQYARYRDG 164 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHC---CCCH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHhCCCc-hhHHHHHHH
Confidence 999999999999999999999999999999999999999999999988765 455677 7877764333 234678889
Q ss_pred HHHHHHHHHHHhcccccc
Q 013948 289 MAEQKLREERQRTGWDQT 306 (433)
Q Consensus 289 ~~~~~~~~~~~a~~~~~~ 306 (433)
.++..+|++++|+.++++
T Consensus 165 ~~~~~~~~~~~A~~~~~~ 182 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQK 182 (208)
T ss_dssp HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHH
Confidence 999999999999888774
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-19 Score=169.88 Aligned_cols=145 Identities=25% Similarity=0.361 Sum_probs=137.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------------
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN--------------- 211 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--------------- 211 (433)
++++++|+..+++++...|.. +.+++.+|.+++..|+|++|+..|++++.++|++
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~----------a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~ 195 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQ----------STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR 195 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHH----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHH----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHH
Confidence 467777888888888887776 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
..+|+++|.++..+|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+. +|+++++++|++..++..++.++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARA-DFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHCCCCHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 013948 292 QKLREERQRTG 302 (433)
Q Consensus 292 ~~~~~~~~a~~ 302 (433)
..+|+++++..
T Consensus 275 ~~~~~~~~a~~ 285 (336)
T 1p5q_A 275 QRIRRQLAREK 285 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988744
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-19 Score=171.68 Aligned_cols=197 Identities=14% Similarity=0.077 Sum_probs=163.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|+.++++++++.+.... ..+..+.++..+|.++...|++++|+.+|.+++.+.+.. ..+++++|.
T Consensus 156 ~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 232 (383)
T 3ulq_A 156 MKQTYFSMDYARQAYEIYKEHEA---YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL 232 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCST---THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 58999999999999999887631 135568899999999999999999999999999886543 358999999
Q ss_pred HHHHhhcHHHHHHHHHHHHh-----cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-----CCCHHHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSID-----ID-PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD-----PNNEAVKENIRM 289 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~-----p~~~~~~~~l~~ 289 (433)
+|..+|++++|+.+++++++ .+ |..+.++..+|.++..+|++++|+. ++++++++. |.....+..++.
T Consensus 233 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~l~~ 311 (383)
T 3ulq_A 233 CKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHE-YHSKGMAYSQKAGDVIYLSEFEFLKS 311 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999 56 8889999999999999999999999 999999884 333334556777
Q ss_pred HHHHHHH---HHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhH
Q 013948 290 AEQKLRE---ERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQ 366 (433)
Q Consensus 290 ~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A 366 (433)
++...|+ ..+|....+ .....| ....++..+| .++..+|++++|
T Consensus 312 ~~~~~~~~~~~~~al~~~~---------------------------~~~~~~-----~~~~~~~~la-~~y~~~g~~~~A 358 (383)
T 3ulq_A 312 LYLSGPDEEAIQGFFDFLE---------------------------SKMLYA-----DLEDFAIDVA-KYYHERKNFQKA 358 (383)
T ss_dssp HHTSSCCHHHHHHHHHHHH---------------------------HTTCHH-----HHHHHHHHHH-HHHHHTTCHHHH
T ss_pred HHhCCCcHHHHHHHHHHHH---------------------------HCcCHH-----HHHHHHHHHH-HHHHHCCCHHHH
Confidence 7766665 454544444 233455 7888999999 999999999999
Q ss_pred HHHHhhhcCCCCCc
Q 013948 367 GEDSNVSGSDEPGI 380 (433)
Q Consensus 367 ~~~~~~al~l~P~~ 380 (433)
..+|++++++....
T Consensus 359 ~~~~~~al~~~~~i 372 (383)
T 3ulq_A 359 SAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=145.52 Aligned_cols=132 Identities=15% Similarity=0.085 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHH
Q 013948 154 SRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVR 233 (433)
Q Consensus 154 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 233 (433)
...|++++.++|.+ ..+++.+|.+++..|++++|+..|++++..+|+++.+|+++|.++..+|++++|+.
T Consensus 7 ~~~~~~al~~~p~~----------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 76 (148)
T 2vgx_A 7 GGTIAMLNEISSDT----------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIH 76 (148)
T ss_dssp CCSHHHHTTCCHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHcCCHhh----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHH
Confidence 34678888887776 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013948 234 DCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 234 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
+|++++.++|+++.+++.+|.++..+|++++|+. +|+++++++|+++........+...+..
T Consensus 77 ~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~~~~~~l~~ 138 (148)
T 2vgx_A 77 SYSYGAVMDIXEPRFPFHAAECLLQXGELAEAES-GLFLAQELIANXPEFXELSTRVSSMLEA 138 (148)
T ss_dssp HHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCcCCCcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 9999999999988766555555554443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-18 Score=153.67 Aligned_cols=188 Identities=11% Similarity=0.014 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHH---HHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSK---AYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~ 251 (433)
+..++.+|..++..|+|++|+..|++++...|++ ..+++.+|.++...|++++|+..|+++++.+|+++. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 6789999999999999999999999999999987 478999999999999999999999999999999864 8999
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccc
Q 013948 252 LGLAYYA------------------QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYS 313 (433)
Q Consensus 252 lg~~~~~------------------~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 313 (433)
+|.++.. .|++++|+. .|+++++..|+++.++..+..+....+...... .
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~-----------~ 151 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS-DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE-----------Y 151 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHH-HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH-----------H
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH-HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH-----------H
Confidence 9999987 579999999 999999999998766543333222222211110 1
Q ss_pred hhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 314 QESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 314 ~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
..+.+|...|++++|+..| ++...|+ ....+.+++.+| .++..+|++++|+..++++....|+.
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~l~-~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPD--TQATRDALPLME-NAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT--SHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcC--CCccHHHHHHHH-HHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 1245666677777777777 7888881 113347899999 99999999999999999999999986
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8.5e-18 Score=139.67 Aligned_cols=133 Identities=17% Similarity=0.129 Sum_probs=119.4
Q ss_pred HHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHH
Q 013948 155 RIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRD 234 (433)
Q Consensus 155 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 234 (433)
..|++++..+|.+ ...++.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+.+
T Consensus 5 ~~l~~al~~~p~~----------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 74 (142)
T 2xcb_A 5 GTLAMLRGLSEDT----------LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQS 74 (142)
T ss_dssp ----CCTTCCHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHcCCHHH----------HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3566667776665 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 013948 235 CLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298 (433)
Q Consensus 235 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 298 (433)
|++++.++|+++.+++.+|.++..+|++++|+. +|+++++++|+++........+...++...
T Consensus 75 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~~~~~~l~~l~ 137 (142)
T 2xcb_A 75 YSYGALMDINEPRFPFHAAECHLQLGDLDGAES-GFYSARALAAAQPAHEALAARAGAMLEAVT 137 (142)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHTCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 999999999999887777777776666544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-17 Score=146.59 Aligned_cols=154 Identities=12% Similarity=0.005 Sum_probs=139.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAV---YYSNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~ 223 (433)
.|++++|+..|++++...|.+ +....+++.+|.+++..|++++|+..|+++++.+|++.. +++.+|.++.
T Consensus 17 ~g~~~~A~~~~~~~~~~~p~~-------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~ 89 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRYPFG-------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNM 89 (225)
T ss_dssp HTCHHHHHHHHHHHHHHCTTS-------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHH
Confidence 499999999999999998875 334679999999999999999999999999999999864 8999999998
Q ss_pred H------------------hhcHHHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHHcCCHHHHHHH
Q 013948 224 Q------------------IHQYAEAVRDCLKSIDIDPNYSKAY-----------------SRLGLAYYAQGNYNDAIEK 268 (433)
Q Consensus 224 ~------------------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~~A~~~ 268 (433)
. .|++++|+..|+++++.+|+++.++ +.+|.++...|++++|+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~- 168 (225)
T 2yhc_A 90 ALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVN- 168 (225)
T ss_dssp HHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH-
T ss_pred hhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH-
Confidence 7 5799999999999999999987654 678999999999999999
Q ss_pred HHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 269 GFKKALQLDPNNE---AVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 269 ~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
.|+++++..|+++ .++..++.++..+|++++|...++.+.
T Consensus 169 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 169 RVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 9999999999986 679999999999999999998877544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-19 Score=174.92 Aligned_cols=226 Identities=15% Similarity=0.126 Sum_probs=191.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------cCCCHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL------CGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~ 220 (433)
.|++++|+.+|+++++..|.+ ......++..+|.++...|++++|+..|++++.+ .|....++..+|.
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTED------LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSC------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHhcccC------hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 599999999999999998775 2334578999999999999999999999999998 5677899999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhhC
Q 013948 221 AYTQIHQYAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGN-----------------YNDAIEKGFKKALQLD 277 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~-----------------~~~A~~~~~~~al~~~ 277 (433)
++...|++++|+.+|++++.+ .|....++..+|.++...|+ +++|+. ++++++++.
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~-~~~~al~~~ 213 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE-FYQENLKLM 213 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999999 56678899999999999999 999999 999998864
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHHHhcccccccCCCcc------------chhhhhhhcCCCCCCCCCcc--cccCC
Q 013948 278 ------PNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHY------------SQESNQSTGGFRSHGTPPSF--TMPFN 337 (433)
Q Consensus 278 ------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~--al~~~ 337 (433)
+....++..+|.++...|++++|..++..+..... ...+..|...|++++|+..| ++...
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 33456899999999999999999998776652111 11256788889999999999 77666
Q ss_pred CC-CCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 338 TN-ALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 338 p~-~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
|. ..+.....++..+| .++..+|++++|+..+++++++.+..
T Consensus 294 ~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLG-NTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 51 11123478999999 99999999999999999999886554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-18 Score=158.28 Aligned_cols=207 Identities=10% Similarity=0.043 Sum_probs=157.5
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHH
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN------NAVYYSNRAAAY 222 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~ 222 (433)
++++|+..|+++ |.++...|++++|+.+|.+++.+.+. .+.++.++|.+|
T Consensus 32 ~~~~A~~~~~~a------------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~ 87 (292)
T 1qqe_A 32 KFEEAADLCVQA------------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCF 87 (292)
T ss_dssp HHHHHHHHHHHH------------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH------------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 577777777665 45677889999999999999998542 267899999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhCCCC------HHHHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNY------SKAYSRLGLAYYAQ-GNYNDAIEKGFKKALQLDPNN------EAVKENIRM 289 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~~al~~~p~~------~~~~~~l~~ 289 (433)
..+|++++|+.+|++++.+.|.. ..++.++|.+|... |++++|+. +|++++++.|.+ ..++.++|.
T Consensus 88 ~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~-~~~~Al~~~~~~~~~~~~~~~~~~lg~ 166 (292)
T 1qqe_A 88 KSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAID-CYELAGEWYAQDQSVALSNKCFIKCAD 166 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 99999999999999999998753 56899999999996 99999999 999999998754 467889999
Q ss_pred HHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCC--ccHHHHHHHHhhcccccCCChhhHH
Q 013948 290 AEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALP--TDIASMLMNMASNMPQAQPSQSRQG 367 (433)
Q Consensus 290 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~--~~~~~a~~~la~~~~~~~g~~~~A~ 367 (433)
++..+|++++|...+..+ +...|.... .....++.++| .++..+|++++|+
T Consensus 167 ~~~~~g~~~~A~~~~~~a--------------------------l~~~~~~~~~~~~~~~~~~~lg-~~~~~~g~~~~A~ 219 (292)
T 1qqe_A 167 LKALDGQYIEASDIYSKL--------------------------IKSSMGNRLSQWSLKDYFLKKG-LCQLAATDAVAAA 219 (292)
T ss_dssp HHHHTTCHHHHHHHHHHH--------------------------HHTTSSCTTTGGGHHHHHHHHH-HHHHHTTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH--------------------------HHHHhcCCcccHHHHHHHHHHH-HHHHHcCCHHHHH
Confidence 999999999998887643 334441111 13345789999 9999999999999
Q ss_pred HHHhhhcCCCCCc-ccc-ccccccc----ccCCcHHHHHHHHHHHh
Q 013948 368 EDSNVSGSDEPGI-RIG-GNINLNF----GENMPEDITGALRSMME 407 (433)
Q Consensus 368 ~~~~~al~l~P~~-~~~-~~~~~~l----~~~~~~~~~~a~~~~~~ 407 (433)
.+|+++++++|++ ... ...+..+ ...+.+++.+++..+.+
T Consensus 220 ~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 220 RTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp HHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 9999999999998 221 1111112 13455666666666643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-17 Score=158.15 Aligned_cols=193 Identities=10% Similarity=0.019 Sum_probs=158.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN------NAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~ 220 (433)
.|++++|+.+++++++..+.... ..+..+.++..+|.++...|++++|+..|.+++.+.+. ...+++++|.
T Consensus 154 ~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 230 (378)
T 3q15_A 154 MKQTHVSMYHILQALDIYQNHPL---YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHhCCC---chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 58999999999999999887521 12356889999999999999999999999999987432 2568999999
Q ss_pred HHHHhhcHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC-----CHHHHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSID-----IDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN-----NEAVKENIRMA 290 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~-----~~~~~~~l~~~ 290 (433)
++..+|++++|+.++++++. .+|..+.+++.+|.++..+|++++|+. ++++++++.+. .......++.+
T Consensus 231 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~l~~l 309 (378)
T 3q15_A 231 SYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ-FIEEGLDHITARSHKFYKELFLFLQAV 309 (378)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCCTTCCSCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999 788889999999999999999999999 99999998543 33444455555
Q ss_pred HHHHHH---HHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHH
Q 013948 291 EQKLRE---ERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQG 367 (433)
Q Consensus 291 ~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~ 367 (433)
+...++ ..++..+.. .....| ....++..+| .++..+|++++|.
T Consensus 310 y~~~~~~~~~~~al~~~~---------------------------~~~~~~-----~~~~~~~~la-~~y~~~g~~~~A~ 356 (378)
T 3q15_A 310 YKETVDERKIHDLLSYFE---------------------------KKNLHA-----YIEACARSAA-AVFESSCHFEQAA 356 (378)
T ss_dssp HSSSCCHHHHHHHHHHHH---------------------------HTTCHH-----HHHHHHHHHH-HHHHHTTCHHHHH
T ss_pred HhCCCcHHHHHHHHHHHH---------------------------hCCChh-----HHHHHHHHHH-HHHHHCCCHHHHH
Confidence 544443 444444433 233445 7788899999 9999999999999
Q ss_pred HHHhhhcCC
Q 013948 368 EDSNVSGSD 376 (433)
Q Consensus 368 ~~~~~al~l 376 (433)
.+|+++++.
T Consensus 357 ~~~~~al~~ 365 (378)
T 3q15_A 357 AFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.6e-17 Score=130.99 Aligned_cols=116 Identities=30% Similarity=0.445 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
.+..++.+|..++..|+|++|+..|++++.++|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHH
Q 013948 257 YAQGNYNDAIEKGFKKALQLD------PNNEAVKENIRMAEQK 293 (433)
Q Consensus 257 ~~~g~~~~A~~~~~~~al~~~------p~~~~~~~~l~~~~~~ 293 (433)
..+|++++|+. +|+++++++ |++..++..+..+...
T Consensus 83 ~~~~~~~~A~~-~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 83 IAVKEYASALE-TLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHTTCHHHHHH-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHH-HHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999 999999999 9999999999887654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-17 Score=140.44 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=144.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..+++++...|.+ ..++..+|.++...|++++|+..+++++..+|++..++..+|.++...|
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 21 AGRYSQAVMLLEQVYDADAFD----------VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HTCHHHHHHHHTTTCCTTSCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHhCccC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Confidence 589999999999999988876 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..+++++..+|.++.++..+|.++...|++++|+. +++++++..|.++.++..++.++...|++++|..++..
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID-SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH-HHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999988775
Q ss_pred cC
Q 013948 307 TS 308 (433)
Q Consensus 307 ~~ 308 (433)
+.
T Consensus 170 ~~ 171 (186)
T 3as5_A 170 AN 171 (186)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-19 Score=167.32 Aligned_cols=226 Identities=15% Similarity=0.129 Sum_probs=186.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------cCCCHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL------CGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~ 220 (433)
.|++++|+..|+++++..|.+ ......++..+|.++...|++++|+..+++++.+ .|....++..+|.
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTED------LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSC------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 599999999999999997765 3344678999999999999999999999999987 4455789999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNY------SKAYSRLGLAYYAQGN--------------------YNDAIEKGFKKAL 274 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~--------------------~~~A~~~~~~~al 274 (433)
++...|++++|+..+++++++.|.. ..++..+|.++...|+ +++|+. ++++++
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~-~~~~a~ 170 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD-LYEENL 170 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH-HHHHHH
Confidence 9999999999999999999986543 4589999999999999 999999 999998
Q ss_pred hh------CCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCcc------------chhhhhhhcCCCCCCCCCcc--cc
Q 013948 275 QL------DPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHY------------SQESNQSTGGFRSHGTPPSF--TM 334 (433)
Q Consensus 275 ~~------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~--al 334 (433)
.+ .+....++..++.++...|++++|..++..+..... ...+..+...|++++|+..+ ++
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 76 233456889999999999999999998776542111 11145677779999999999 66
Q ss_pred cCCCC-CCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 335 PFNTN-ALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 335 ~~~p~-~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
...|. ..+.....++..+| .++..+|++++|+..+++++++.|..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLG-NTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 66551 11223478899999 99999999999999999999886654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-18 Score=147.04 Aligned_cols=164 Identities=9% Similarity=-0.007 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+| ++..+..++.+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 456888999999999999999999999999999999999999999999999999999999999999 8877777775533
Q ss_pred -HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccC
Q 013948 258 -AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPF 336 (433)
Q Consensus 258 -~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~ 336 (433)
..+...+|+. .++++++++|+++.++..+|.++...|++++|...+.. ++..
T Consensus 85 ~~~~~~~~a~~-~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~--------------------------~l~~ 137 (176)
T 2r5s_A 85 HQQAAESPELK-RLEQELAANPDNFELACELAVQYNQVGRDEEALELLWN--------------------------ILKV 137 (176)
T ss_dssp HHHHTSCHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------HHTT
T ss_pred HhhcccchHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH--------------------------HHHh
Confidence 3344556899 99999999999999999999999999999999888663 4566
Q ss_pred CCCCCCccH--HHHHHHHhhcccccCCChhhHHHHHhhhcC
Q 013948 337 NTNALPTDI--ASMLMNMASNMPQAQPSQSRQGEDSNVSGS 375 (433)
Q Consensus 337 ~p~~~~~~~--~~a~~~la~~~~~~~g~~~~A~~~~~~al~ 375 (433)
+| +. +.++..+| .++..+|+.++|+..|++++.
T Consensus 138 ~p-----~~~~~~a~~~l~-~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 138 NL-----GAQDGEVKKTFM-DILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp CT-----TTTTTHHHHHHH-HHHHHHCSSCHHHHHHHHHHH
T ss_pred Cc-----ccChHHHHHHHH-HHHHHhCCCCcHHHHHHHHHH
Confidence 77 54 56999999 999999999999999999864
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.6e-19 Score=170.30 Aligned_cols=226 Identities=15% Similarity=0.126 Sum_probs=188.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------cCCCHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL------CGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~ 220 (433)
.|++++|+.+|++++...|.+ ......++..+|.+++..|++++|+..|++++.+ .|....++..+|.
T Consensus 22 ~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 95 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVGTED------LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 95 (406)
T ss_dssp TTCHHHHHHHHHHHHHHCCSC------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 599999999999999997765 3344678999999999999999999999999987 3445789999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNY------SKAYSRLGLAYYAQGN--------------------YNDAIEKGFKKAL 274 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~--------------------~~~A~~~~~~~al 274 (433)
++...|++++|+.++++++.+.|.. ..++..+|.++...|+ +++|+. ++++++
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~-~~~~al 174 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD-FYEENL 174 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH-HHHHHH
Confidence 9999999999999999999987654 5699999999999999 999999 999998
Q ss_pred hh------CCCCHHHHHHHHHHHHHHHHHHHhcccccccCCC----cc--------chhhhhhhcCCCCCCCCCcc--cc
Q 013948 275 QL------DPNNEAVKENIRMAEQKLREERQRTGWDQTTSSS----HY--------SQESNQSTGGFRSHGTPPSF--TM 334 (433)
Q Consensus 275 ~~------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--------~~~~~~~~~~~~~~~A~~~~--al 334 (433)
.+ .|....++..+|.++...|++++|..++..+... .. ...+..|...|++++|+..+ ++
T Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 254 (406)
T 3sf4_A 175 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 87 3444668999999999999999999987765521 11 11156678889999999999 77
Q ss_pred cCCCC-CCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 335 PFNTN-ALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 335 ~~~p~-~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
...|. ..+.....++..+| .++..+|++++|+..|++++++.+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 255 LLARQLKDRAVEAQSCYSLG-NTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCcCchHHHHHHHHHH-HHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 66651 11123378999999 99999999999999999999885544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=150.70 Aligned_cols=188 Identities=11% Similarity=-0.018 Sum_probs=159.2
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ--QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
..+++++.++.+++..+|++ ..+|..++.++...+ .+++++.++.++++.+|.+..+|..++.++...
T Consensus 88 ~~l~~EL~~~~~~L~~~PKn----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l 157 (331)
T 3dss_A 88 ALVKAELGFLESCLRVNPKS----------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA 157 (331)
T ss_dssp HHHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 35889999999999999998 999999999999988 499999999999999999999999999999999
Q ss_pred hc-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013948 226 HQ-YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ--------------GNYNDAIEKGFKKALQLDPNNEAVKENIRMA 290 (433)
Q Consensus 226 ~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~ 290 (433)
|. ++++++++.++++.+|.+..+|..++.++... +.++++++ ++.+++..+|++..+|+.+..+
T Consensus 158 ~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle-~~~~ai~~~P~d~SaW~Y~r~l 236 (331)
T 3dss_A 158 AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE-LVQNAFFTDPNDQSAWFYHRWL 236 (331)
T ss_dssp TCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHH-HHHHHHHHSTTCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHH-HHHHHHHhCCCCHHHHHHHHHH
Confidence 99 69999999999999999999999999999988 56999999 9999999999999999877655
Q ss_pred HHHH-----------HHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcc-
Q 013948 291 EQKL-----------REERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNM- 356 (433)
Q Consensus 291 ~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~- 356 (433)
+... +..+ ++++.+ .++++| ++.=++..++ .+
T Consensus 237 l~~~~~~~~~~~~~~~~l~----------------------------~el~~~~elle~~p-----d~~w~l~~~~-~~~ 282 (331)
T 3dss_A 237 LGAGSGRCELSVEKSTVLQ----------------------------SELESCKELQELEP-----ENKWCLLTII-LLM 282 (331)
T ss_dssp HHSSSCGGGCCHHHHHHHH----------------------------HHHHHHHHHHHHCT-----TCHHHHHHHH-HHH
T ss_pred HHhccCccccchHHHHHHH----------------------------HHHHHHHHHHhhCc-----ccchHHHHHH-HHH
Confidence 5433 2233 333334 678889 7754444444 22
Q ss_pred --cccCCChhhHHHHHhhhcCCCCCc
Q 013948 357 --PQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 357 --~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
....|..++....+.+.+++||--
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred HhhcccccHHHHHHHHHHHHHhCcch
Confidence 234688889999999999999974
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-17 Score=167.40 Aligned_cols=151 Identities=13% Similarity=0.053 Sum_probs=127.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|+++++.+|.+ ..+++.+|.++...|++++|+..|+++++++|++..+++++|.++..+|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 71 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD----------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ 71 (568)
T ss_dssp -------------------CC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 378999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HHHHHhccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL---REERQRTGW 303 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~a~~~ 303 (433)
++++|+..|+++++++|+++.+++.+|.++...|++++|+. +|+++++++|++..++..++.++..+ |++++|...
T Consensus 72 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 72 RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAA-AYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999 999999888
Q ss_pred ccccC
Q 013948 304 DQTTS 308 (433)
Q Consensus 304 ~~~~~ 308 (433)
++++.
T Consensus 151 ~~~al 155 (568)
T 2vsy_A 151 VRAAV 155 (568)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-17 Score=150.12 Aligned_cols=188 Identities=15% Similarity=0.122 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hhcHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ----IHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
+.+++.+|.++...|++++|+.+|+++++ |+++.+++++|.++.. .+++++|+.+|+++++.+ ++.+++.+|
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 81 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 78999999999999999999999999998 7899999999999999 999999999999999985 899999999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHhcccccccCCCccch----hhhhhhc
Q 013948 254 LAYYA----QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK----LREERQRTGWDQTTSSSHYSQ----ESNQSTG 321 (433)
Q Consensus 254 ~~~~~----~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ 321 (433)
.++.. .+++++|+. +|+++++. +++.++..+|.++.. .+++++|..+++++....... .+.+|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~-~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQ-YYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHH-HHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHH-HHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 99999 999999999 99999987 489999999999999 999999999988776322211 2456666
Q ss_pred ----CCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhccccc----CCChhhHHHHHhhhcCCCCCc
Q 013948 322 ----GFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQA----QPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 322 ----~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~----~g~~~~A~~~~~~al~l~P~~ 380 (433)
.+++++|+..| ++..++ +.+++.+| .++.. .+++++|+.+|+++++.+|..
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg-~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 219 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLKD-------SPGCFNAG-NMYHHGEGATKNFKEALARYSKACELENGG 219 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHH-HHHHHTCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC-------HHHHHHHH-HHHHcCCCCCccHHHHHHHHHHHHhCCCHH
Confidence 79999999999 665544 57889999 99999 999999999999999998754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-17 Score=152.50 Aligned_cols=165 Identities=12% Similarity=0.067 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+....+...+..+.
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999988888888898899
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCC
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFN 337 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~ 337 (433)
..++.++|+. .|++++..+|+++.++..+|.++...|++++|...+.. ++..+
T Consensus 197 ~~~~~~~a~~-~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~--------------------------~l~~~ 249 (287)
T 3qou_A 197 XQAADTPEIQ-QLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFG--------------------------HLRXD 249 (287)
T ss_dssp HHHTSCHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------HHHHC
T ss_pred hhcccCccHH-HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH--------------------------HHhcc
Confidence 9999999999 99999999999999999999999999999999887663 56678
Q ss_pred CCCCCccH--HHHHHHHhhcccccCCChhhHHHHHhhhcC
Q 013948 338 TNALPTDI--ASMLMNMASNMPQAQPSQSRQGEDSNVSGS 375 (433)
Q Consensus 338 p~~~~~~~--~~a~~~la~~~~~~~g~~~~A~~~~~~al~ 375 (433)
| ++ ..++.+++ .++..+|+.++|...|++++.
T Consensus 250 p-----~~~~~~a~~~l~-~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 250 L-----TAADGQTRXTFQ-EILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp T-----TGGGGHHHHHHH-HHHHHHCTTCHHHHHHHHHHH
T ss_pred c-----ccccchHHHHHH-HHHHHcCCCCcHHHHHHHHHH
Confidence 8 76 88999999 999999999999999999864
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-17 Score=134.39 Aligned_cols=122 Identities=13% Similarity=0.094 Sum_probs=112.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 203 FAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 203 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
++..++|+.+..+.++|.++++.|+|++|+..|+++++++|.++.+|+++|.++..+|++++|+. .|+++++++|+++.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~-~~~~al~~~p~~~~ 82 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD-DCDTCIRLDSKFIK 82 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHH-HHHHHHHhhhhhhH
Confidence 45568999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhccc
Q 013948 283 VKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMP 357 (433)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~ 357 (433)
++..+|.++..+|++++|...++. +++++| +++.++..++ .++
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~--------------------------al~l~P-----~~~~a~~~l~-~~l 125 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYED--------------------------ALQVDP-----SNEEAREGVR-NCL 125 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH--------------------------HHHHCT-----TCHHHHHHHH-HHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH--------------------------HHHHCc-----CCHHHHHHHH-Hhc
Confidence 999999999999999999887663 677899 9999999988 654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.1e-17 Score=164.52 Aligned_cols=163 Identities=10% Similarity=0.042 Sum_probs=135.0
Q ss_pred ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013948 191 SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270 (433)
Q Consensus 191 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 270 (433)
.|++++|+..|+++++.+|++..+++++|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+. +|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV-LL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH-HH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHH
Q 013948 271 KKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLM 350 (433)
Q Consensus 271 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~ 350 (433)
+++++++|++..++..+|.++..+|++++|...+++ ++..+| +++.++.
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--------------------------al~~~p-----~~~~~~~ 129 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR--------------------------AHQLLP-----EEPYITA 129 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------HHHHCT-----TCHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------HHHhCC-----CCHHHHH
Confidence 999999999999999999999999999999887663 567789 9999999
Q ss_pred HHhhcccccC---CChhhHHHHHhhhcCCCCCc-cccccc
Q 013948 351 NMASNMPQAQ---PSQSRQGEDSNVSGSDEPGI-RIGGNI 386 (433)
Q Consensus 351 ~la~~~~~~~---g~~~~A~~~~~~al~l~P~~-~~~~~~ 386 (433)
++| .++..+ |++++|+..|+++++.+|++ ..+..+
T Consensus 130 ~l~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 168 (568)
T 2vsy_A 130 QLL-NWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFL 168 (568)
T ss_dssp HHH-HHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred HHH-HHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHh
Confidence 999 999999 99999999999999999998 444333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.8e-16 Score=132.76 Aligned_cols=124 Identities=34% Similarity=0.558 Sum_probs=113.0
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGL 254 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 254 (433)
+..+..++.+|.+++..|+|++|+..|++++.++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+|+.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHHH
Q 013948 255 AYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA--EQKLREERQ 299 (433)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~ 299 (433)
++..+|++++|+. +|+++++++|++..++...+.. ...+++...
T Consensus 88 ~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~ 133 (164)
T 3sz7_A 88 ARFDMADYKGAKE-AYEKGIEAEGNGGSDAMKRGLETTKRKIEEANR 133 (164)
T ss_dssp HHHHTTCHHHHHH-HHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHH-HHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 9999999999998866555544 445554443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-16 Score=133.38 Aligned_cols=124 Identities=22% Similarity=0.311 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIAL------------------CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKS 238 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 238 (433)
.+..+..+|..++..|+|++|+..|.+++.+ +|.+..+|+++|.|+..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4788999999999999999999999999999 7777899999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHhc
Q 013948 239 IDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE-AVKENIRMAEQKLREERQRT 301 (433)
Q Consensus 239 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~a~ 301 (433)
++++|+++.+|+.+|.++..+|++++|+. +|+++++++|+++ .+...++.+...++...+..
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~-~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~ 152 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEE-DLKLLLRNHPAAASVVAREMKIVTERRAEKKADS 152 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 9999999999999 77888999988887766554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.2e-16 Score=146.27 Aligned_cols=206 Identities=11% Similarity=0.016 Sum_probs=162.3
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS-Q-QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.+++++.++.++|..+|++ ..+|..++.++... + ++++++.++.++++.+|.+..+|..++.++...+
T Consensus 104 ~l~eEL~~~~~~L~~nPKn----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~ 173 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKS----------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFS 173 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCC----------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 5899999999999999998 99999999999887 7 8999999999999999999999999999999999
Q ss_pred cHH--------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 227 QYA--------EAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN-------YNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 227 ~~~--------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
.++ +++++++++++.+|.|..+|..++.++...+. ++++++ ++.+++.++|++..+|..+..++
T Consensus 174 ~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe-~~~~aI~~~P~n~SaW~Ylr~Ll 252 (349)
T 3q7a_A 174 TLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELI-YILKSIHLIPHNVSAWNYLRGFL 252 (349)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHH-HHHHHHHhCCCCHHHHHHHHHHH
Confidence 988 99999999999999999999999999999987 799999 99999999999999999988877
Q ss_pred HHHHHHH----HhcccccccCCCccchhhhhhhcCCCCCCCCCcc---cccCC-CCCCCccHHHHHHHHhhcccccCCCh
Q 013948 292 QKLREER----QRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF---TMPFN-TNALPTDIASMLMNMASNMPQAQPSQ 363 (433)
Q Consensus 292 ~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~---al~~~-p~~~~~~~~~a~~~la~~~~~~~g~~ 363 (433)
...|... .+.-.+......+. . ..+..| .+... +.......+.++.-++ .+|...|+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~-d~~~~~~~~ 318 (349)
T 3q7a_A 253 KHFSLPLVPILPAILPYTASKLNPD---------I----ETVEAFGFPMPSDPLPEDTPLPVPLALEYLA-DSFIEQNRV 318 (349)
T ss_dssp HHTTCCSGGGHHHHGGGTC---------------------------CCCCC-CCCSSCCSCCHHHHHHHH-HHHHHTTCH
T ss_pred HhcCCCccccccccccccccccccc---------c----hhHHHHHHHHHhcccccccCCCcHHHHHHHH-HHHHhcCCH
Confidence 6655430 00000000000000 0 011111 11111 0011127778899999 999999999
Q ss_pred hhHHHHHhhhc-CCCCC
Q 013948 364 SRQGEDSNVSG-SDEPG 379 (433)
Q Consensus 364 ~~A~~~~~~al-~l~P~ 379 (433)
++|.+.|+... +.||-
T Consensus 319 ~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 319 DDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp HHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHhhhChH
Confidence 99999999976 66775
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-16 Score=146.08 Aligned_cols=216 Identities=10% Similarity=-0.035 Sum_probs=178.1
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHH----
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ--QYSDAIELYSFAIALCGNNAVYYSNRAAAY---- 222 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~---- 222 (433)
..++|+.++.++|.++|.+ ..+|+.++.++...+ ++++++.++.+++..+|++..+|+.++.++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~----------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 48 YSERALHITELGINELASH----------YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcHH----------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 4468999999999999998 999999999999999 999999999999999999999999999999
Q ss_pred HHh---hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH-
Q 013948 223 TQI---HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYN--DAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE- 296 (433)
Q Consensus 223 ~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~- 296 (433)
... +++++++.+++++++.+|.+..+|..++.++...|.++ +++. .+.++++.+|.|..+|...+.+...++.
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~-~~~~~i~~d~~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELS-FVDKVIDTDLKNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHSSGGG
T ss_pred HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHhcccc
Confidence 777 78999999999999999999999999999999999999 9999 9999999999999999999999887765
Q ss_pred -----HHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhH-HHHH
Q 013948 297 -----ERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQ-GEDS 370 (433)
Q Consensus 297 -----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A-~~~~ 370 (433)
++++..+... ++..+| ++..+|+.++ .++...|+..++ ...+
T Consensus 197 ~~~~~~~eEl~~~~~--------------------------aI~~~p-----~n~SaW~y~~-~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 197 ATDNTIDEELNYVKD--------------------------KIVKCP-----QNPSTWNYLL-GIHERFDRSITQLEEFS 244 (306)
T ss_dssp CCHHHHHHHHHHHHH--------------------------HHHHCS-----SCHHHHHHHH-HHHHHTTCCGGGGHHHH
T ss_pred chhhhHHHHHHHHHH--------------------------HHHhCC-----CCccHHHHHH-HHHHhcCCChHHHHHHH
Confidence 4444443321 688899 9999999999 899999986664 4577
Q ss_pred hhhcCCC---CCc-ccccccccccc-cCCcHHHHHHHHHHHh
Q 013948 371 NVSGSDE---PGI-RIGGNINLNFG-ENMPEDITGALRSMME 407 (433)
Q Consensus 371 ~~al~l~---P~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~ 407 (433)
.++++++ |.+ .+...+...+. ..+.++..+++..+.+
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 7778776 555 22222222221 2344444445555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=9.7e-17 Score=133.85 Aligned_cols=119 Identities=15% Similarity=0.178 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHHhhcHHHHHHHHHHHHhc---
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN-------NAV-----YYSNRAAAYTQIHQYAEAVRDCLKSIDI--- 241 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~al~~--- 241 (433)
.+..+..+|..++..|+|++|+..|+++|+++|+ +.. +|+++|.++..+|+|++|+.+|+++|++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4788999999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ----CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013948 242 ----DPNYSKAY----SRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 242 ----~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
+|+++.+| +++|.++..+|++++|+. +|+++++++|++......+..+......
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~-~y~kAlel~p~d~~~~~~~~~~~~~~~~ 151 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMP-EFKKVVEMIEERKGETPGKERMMEVAID 151 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999 9999999999998777777766655443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-16 Score=134.55 Aligned_cols=132 Identities=23% Similarity=0.309 Sum_probs=120.4
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAA-YTQ 224 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~ 224 (433)
..|++++|+..+++++..+|.+ ..+++.+|.++...|++++|+.+|++++.++|+++.+++.+|.+ +..
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~ 91 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQN----------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ 91 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999887 88999999999999999999999999999999999999999999 889
Q ss_pred hhcH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013948 225 IHQY--AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288 (433)
Q Consensus 225 ~~~~--~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~ 288 (433)
.|++ ++|+..++++++.+|+++.+++.+|.++...|++++|+. +|+++++++|++......+.
T Consensus 92 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 92 ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE-LWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTCCTTSCHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHH-HHHHHHhhCCCCccHHHHHH
Confidence 9999 999999999999999999999999999999999999999 99999999999866554443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=139.48 Aligned_cols=145 Identities=26% Similarity=0.329 Sum_probs=128.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH--------------
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA-------------- 212 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-------------- 212 (433)
.|+++++.+.+.......+.. +..+..+|..++..|+|++|+..|.+++.+.|.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQS----------AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp -----CCCSGGGCCHHHHHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 577777777777666554443 88999999999999999999999999999999887
Q ss_pred --HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013948 213 --VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA 290 (433)
Q Consensus 213 --~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~ 290 (433)
.+++++|.++..+|++++|+.++++++.++|+++.+++.+|.++..+|++++|+. +|+++++++|++..++..++.+
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE-NLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHCCCcHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 013948 291 EQKLREERQRTG 302 (433)
Q Consensus 291 ~~~~~~~~~a~~ 302 (433)
+..+++..++..
T Consensus 166 ~~~~~~~~~~~~ 177 (198)
T 2fbn_A 166 VNKLKEARKKDK 177 (198)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHHH
Confidence 999999887663
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-17 Score=153.57 Aligned_cols=191 Identities=20% Similarity=0.227 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+..++.+|..++..|++++|+..|++++..+|+++.+++++|.++..+|++++|+..++++++++|+++.+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcc
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNE-----AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF 332 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 332 (433)
.+|++++|+. +|+++++++|+++ .++..+.. .....+...... .....+......-....|++++|++.+
T Consensus 84 ~~g~~~~A~~-~~~~al~l~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~i~~~l~~l~~~~~~~A~~~~ 158 (281)
T 2c2l_A 84 EMESYDEAIA-NLQRAYSLAKEQRLNFGDDIPSALRI--AKKKRWNSIEER--RIHQESELHSYLTRLIAAERERELEEC 158 (281)
T ss_dssp HTTCHHHHHH-HHHHHHHHHHHTTCCCCSHHHHHHHH--HHHHHHHHHHHT--CCCCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HcCCHHHHHH-HHHHHHHhCccchhhHHHHHHHHHHH--HHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999998763 23333322 222222221111 111111111111112247888888888
Q ss_pred --cccCCCCCCCccHHHHHHHHhhcccccC-CChhhHHHHHhhhcCCCCC
Q 013948 333 --TMPFNTNALPTDIASMLMNMASNMPQAQ-PSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 333 --al~~~p~~~~~~~~~a~~~la~~~~~~~-g~~~~A~~~~~~al~l~P~ 379 (433)
++..+| ++......++ .++... +++++|.+.|.++.+..+.
T Consensus 159 ~~al~~~p-----~~~~~~~~l~-~~~~~~~~~~~~a~~~f~~a~~~~~~ 202 (281)
T 2c2l_A 159 QRNHEGHE-----DDGHIRAQQA-CIEAKHDKYMADMDELFSQVDEKRKK 202 (281)
T ss_dssp SGGGTTTS-----CHHHHTHHHH-HHHHHHHHHHHHHHHHHHHSSCTTSC
T ss_pred Hhhhcccc-----chhhhhhHHH-HHHHHHHHHHHHHHHHHHhhhccccC
Confidence 889999 8888888877 665555 7788999999888875433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.9e-16 Score=126.51 Aligned_cols=110 Identities=27% Similarity=0.394 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc-------HHH
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY-------SKA 248 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~ 248 (433)
+.+.++..+|..++..|+|++|+.+|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|++ ..+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 3478899999999999999999999999999999999999999999999999999999999999998875 368
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENI 287 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l 287 (433)
+.++|.++..+|++++|+. +|++++...|+ ++....+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~-~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQ-WFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHH-HHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHH-HHHHHHhhCcC-HHHHHHH
Confidence 9999999999999999999 99999999885 5544443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-16 Score=160.75 Aligned_cols=200 Identities=5% Similarity=-0.020 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhcCCCHHHHHHHH
Q 013948 150 VDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ----------YSDAIELYSFAIALCGNNAVYYSNRA 219 (433)
Q Consensus 150 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la 219 (433)
.++|++.+.+++..+|++ ..+|+.++.++...++ ++++++.+.+++..+|++..+|+.++
T Consensus 45 ~eeal~~~~~~l~~nP~~----------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~ 114 (567)
T 1dce_A 45 DESVLELTSQILGANPDF----------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC 114 (567)
T ss_dssp SHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCchh----------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 467899999999999998 9999999999999988 99999999999999999999999999
Q ss_pred HHHHHhh--cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013948 220 AAYTQIH--QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG-NYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 220 ~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
.++.+.+ ++++++.+++++++++|.+..+|..++.++...| .++++++ ++.++++.+|.+..+|...+.++..++.
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~-~~~~~I~~~p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA-FTDSLITRNFSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH-HHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHH-HHHHHHHHCCCCccHHHHHHHHHHhhcc
Confidence 9999999 7799999999999999999999999999999999 9999999 9999999999999999999999887622
Q ss_pred HHHhcccccccCCCccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhh---------
Q 013948 297 ERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSR--------- 365 (433)
Q Consensus 297 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~--------- 365 (433)
...+.... . ...+.++++++.+ ++..+| ++..+|+.++ .++...+++++
T Consensus 194 ~~~~~~~~------~--------~~~~~~~eel~~~~~ai~~~P-----~~~saW~y~~-~ll~~~~~~~~~~~~~~~~~ 253 (567)
T 1dce_A 194 QPDSGPQG------R--------LPENVLLKELELVQNAFFTDP-----NDQSAWFYHR-WLLGRAEPHDVLCCVHVSRE 253 (567)
T ss_dssp CCCSSSCC------S--------SCHHHHHHHHHHHHHHHHHCS-----SCSHHHHHHH-HHHSCCCCCSCEEEEEEETT
T ss_pred cccccccc------c--------ccHHHHHHHHHHHHHHHhhCC-----CCccHHHHHH-HHHhcCCCccceeeeeeccC
Confidence 11000000 0 0001122333334 788999 9999999999 89999999888
Q ss_pred ---HHHHHhhhcCCCCCc
Q 013948 366 ---QGEDSNVSGSDEPGI 380 (433)
Q Consensus 366 ---A~~~~~~al~l~P~~ 380 (433)
|+.+|.+++.++|..
T Consensus 254 ~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 254 EACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp TTEEEEEEEEEECTTBTT
T ss_pred CceEEEEeccceeccccc
Confidence 778899999999984
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.8e-17 Score=161.45 Aligned_cols=146 Identities=24% Similarity=0.371 Sum_probs=134.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------------
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN--------------- 211 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--------------- 211 (433)
.+++++|+..+++++...|.. +..+..+|.+++..|+|++|+..|++++.++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~----------a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~ 316 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQ----------AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFL 316 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHH----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH
Confidence 467888888888888887776 8999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
..+|+++|.|+.++|+|++|+.+|+++++++|+++.+++++|.+|..+|++++|+. +|+++++++|++..++..++.++
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~-~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG-DFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHhccc
Q 013948 292 QKLREERQRTGW 303 (433)
Q Consensus 292 ~~~~~~~~a~~~ 303 (433)
..++++.++...
T Consensus 396 ~~~~~~~~a~~~ 407 (457)
T 1kt0_A 396 KKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998877653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=137.42 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=134.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-Hh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYT-QI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 225 (433)
.|++++|+..|+++++.+|.+ ..+++.+|.++...|++++|+..|++++..+| ++..+..++.+.. ..
T Consensus 19 ~g~~~~A~~~~~~al~~~P~~----------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 19 QGEHAQALNVIQTLSDELQSR----------GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp TTCHHHHHHHHHTSCHHHHTS----------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCc----------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence 589999999999999999998 89999999999999999999999999999999 8887777775543 33
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHhccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN--EAVKENIRMAEQKLREERQRTGW 303 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~ 303 (433)
++..+|+..++++++++|+++.+++.+|.++...|++++|+. .|+++++.+|+. +.++..++.++..+|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALE-LLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH-HHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 445568999999999999999999999999999999999999 999999999975 66999999999999999888887
Q ss_pred ccc
Q 013948 304 DQT 306 (433)
Q Consensus 304 ~~~ 306 (433)
+++
T Consensus 167 y~~ 169 (176)
T 2r5s_A 167 YRR 169 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-16 Score=157.81 Aligned_cols=190 Identities=11% Similarity=0.065 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHH-HHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhcH
Q 013948 151 DKASRIFHDAIN-EMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA-VYYSNRAAAYTQIHQY 228 (433)
Q Consensus 151 ~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~ 228 (433)
++|+..|++++. ..|.+ ...|..+|..+...|++++|+..|++++.+.|.++ .+|..+|.++...|++
T Consensus 303 ~~A~~~~~~Al~~~~p~~----------~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 372 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKN----------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI 372 (530)
T ss_dssp HHHHHHHHHHTTTTCSSC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccc----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCH
Confidence 389999999997 77877 88999999999999999999999999999999986 6999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 229 AEAVRDCLKSIDIDPNYSKAYSRLGLA-YYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 229 ~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
++|...|+++++..|.....+...+.+ +...|++++|.. .|+++++..|+++.+|..++..+...|+.++|...++.+
T Consensus 373 ~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~-~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 373 KSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK-IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHH-HHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 999999999999999888888877766 446999999999 999999999999999999999999999999888877643
Q ss_pred CCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 308 SSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
+...| ..|......|.... ......|+.+.+...++++++..|+
T Consensus 452 --------------------------l~~~~-~~~~~~~~lw~~~~-~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 452 --------------------------LTSGS-LPPEKSGEIWARFL-AFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp --------------------------HHSCC-SCGGGCHHHHHHHH-HHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred --------------------------HhccC-CCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHCch
Confidence 33333 11223455777777 7778889999999999999999985
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-15 Score=121.90 Aligned_cols=122 Identities=48% Similarity=0.746 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGL 254 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 254 (433)
+.....++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+.++++++..+|+++.+++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 44588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013948 255 AYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297 (433)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 297 (433)
++...|++++|+. +|+++++++|+++.++..++.++..+|++
T Consensus 89 ~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVA-YYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHH-HHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999 99999999999999999999999887753
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=143.94 Aligned_cols=191 Identities=7% Similarity=0.036 Sum_probs=165.4
Q ss_pred chH-HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhcCCCHHHHH
Q 013948 148 SQV-DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ----------YSDAIELYSFAIALCGNNAVYYS 216 (433)
Q Consensus 148 g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~ 216 (433)
|++ ++|+.++.++|.++|.+ ..+|+..+.++...+. +++++.++..++..+|.+..+|+
T Consensus 43 ~e~s~eaL~~t~~~L~~nP~~----------ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~ 112 (331)
T 3dss_A 43 GELDESVLELTSQILGANPDF----------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH 112 (331)
T ss_dssp TCCSHHHHHHHHHHHTTCTTC----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCchh----------HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 344 47999999999999998 8999999999887765 78999999999999999999999
Q ss_pred HHHHHHHHhhc--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 217 NRAAAYTQIHQ--YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN-YNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 217 ~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
.++.++...++ +++++.++.++++.+|.|..+|...+.+....|. +++++. ++.++++.+|.|..+|..++.+...
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~-~~~~~I~~~p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA-FTDSLITRNFSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 99999999994 9999999999999999999999999999999999 699999 9999999999999999999999887
Q ss_pred H--------------HHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhccccc
Q 013948 294 L--------------REERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQA 359 (433)
Q Consensus 294 ~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~ 359 (433)
+ +.++++..+... ++..+| ++..+|+.+...+...
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~--------------------------ai~~~P-----~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQN--------------------------AFFTDP-----NDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHH--------------------------HHHHST-----TCHHHHHHHHHHHHSS
T ss_pred hhhccccccccccchHHHHHHHHHHHH--------------------------HHHhCC-----CCHHHHHHHHHHHHhc
Confidence 7 333333333221 788999 9999996444144444
Q ss_pred CC----------ChhhHHHHHhhhcCCCCCc
Q 013948 360 QP----------SQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 360 ~g----------~~~~A~~~~~~al~l~P~~ 380 (433)
.| .++++++++.++++++|++
T Consensus 241 ~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 241 SGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 34 4789999999999999998
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=150.27 Aligned_cols=205 Identities=13% Similarity=0.046 Sum_probs=163.4
Q ss_pred cchHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAH-AYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRA 219 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la 219 (433)
.|++++|.++++++....+..--. ......-...+...|.++...|++++|+.+|.+++.+.+.. ..++.++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 578899999999998877642100 11223334456667888999999999999999999986543 56899999
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC------HHHHHHH
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDPN------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN------EAVKENI 287 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~------~~~~~~l 287 (433)
.+|..+|++++|+.+|++++.+.+. ...++.++|.+|.. |++++|+. +|++++++.|.. ..++.++
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~-~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH-LYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH-HHHHHHHHHHhCCChhHHHHHHHHH
Confidence 9999999999999999999998543 25788999999999 99999999 999999987653 5688899
Q ss_pred HHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHH
Q 013948 288 RMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQG 367 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~ 367 (433)
|.++..+|++++|..++..+..... .....+ ....++..+| .++..+|++++|+
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~--------------------~~~~~~-----~~~~~~~~~g-~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYK--------------------EMENYP-----TCYKKCIAQV-LVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH--------------------HTTCHH-----HHHHHHHHHH-HHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH--------------------HcCChh-----HHHHHHHHHH-HHHHHcCCHHHHH
Confidence 9999999999999988775432110 011112 4456889999 8999999999999
Q ss_pred HHHhhhcCCCCCc
Q 013948 368 EDSNVSGSDEPGI 380 (433)
Q Consensus 368 ~~~~~al~l~P~~ 380 (433)
.+|++++ ++|++
T Consensus 216 ~~~~~al-~~p~~ 227 (307)
T 2ifu_A 216 KCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHT-TSTTS
T ss_pred HHHHHHh-CCCCC
Confidence 9999999 99987
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-15 Score=125.31 Aligned_cols=131 Identities=28% Similarity=0.477 Sum_probs=122.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 255 (433)
..+..++.+|.+++..|++++|+..|.+++..+|++..+++++|.++...|++++|+..++++++++|.++.+++.+|.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHHHhccccccc
Q 013948 256 YYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA--EQKLREERQRTGWDQTT 307 (433)
Q Consensus 256 ~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~ 307 (433)
+...|++++|+. +|+++++++|.+..++..++.+ +...|++++|...+...
T Consensus 91 ~~~~~~~~~A~~-~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALR-DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 999999999999 9999999999999998666555 77889999998886643
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=9e-16 Score=124.50 Aligned_cols=122 Identities=30% Similarity=0.501 Sum_probs=116.8
Q ss_pred chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHH
Q 013948 173 NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL 252 (433)
Q Consensus 173 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 252 (433)
..+....+++.+|.+++..|++++|+..|++++..+|++..+++.+|.++...|++++|+.+++++++.+|+++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013948 253 GLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLR 295 (433)
Q Consensus 253 g~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 295 (433)
|.++...|++++|+. +|+++++++|.+..++..++.++...|
T Consensus 91 a~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMD-VYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHH-HHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHH-HHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999999 999999999999999999999988765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-15 Score=123.37 Aligned_cols=121 Identities=30% Similarity=0.476 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+..++.+|.+++..|++++|+..|.+++..+|+++.+++++|.++..+|++++|+..++++++++|+++.+++.+|.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKALQLDPN-----NEAVKENIRMAEQKLREERQ 299 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~ 299 (433)
..|++++|+. +|+++++++|+ +..++..+..+........+
T Consensus 89 ~~~~~~~A~~-~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e 134 (137)
T 3q49_B 89 EMESYDEAIA-NLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 134 (137)
T ss_dssp HTTCHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHH-HHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999998 78888888888776665544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.7e-16 Score=144.10 Aligned_cols=149 Identities=11% Similarity=0.045 Sum_probs=141.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|++++..+|+....+...+..+...+
T Consensus 130 ~g~~~~A~~~~~~al~~~P~~----------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 130 ESNYTDALPLLXDAWQLSNQN----------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQA 199 (287)
T ss_dssp TTCHHHHHHHHHHHHHHTTSC----------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcc----------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhc
Confidence 599999999999999999998 8999999999999999999999999999999988888888888899999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHhcccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN--EAVKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
+.++|+..+++++..+|+++.+++.+|.++...|++++|+. .|+++++.+|++ ..++..++.++..+|+.+++...+
T Consensus 200 ~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~-~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 200 ADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALE-LLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH-HHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 99999999999999999999999999999999999999999 999999999998 899999999999999988887776
Q ss_pred cc
Q 013948 305 QT 306 (433)
Q Consensus 305 ~~ 306 (433)
++
T Consensus 279 r~ 280 (287)
T 3qou_A 279 RR 280 (287)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-16 Score=145.08 Aligned_cols=127 Identities=22% Similarity=0.260 Sum_probs=112.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cCCCHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL--------CGNNAVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l 218 (433)
.|++++|+.++++++....... ....+....++..+|.++...|++++|+..|.+++.+ +|....++.++
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 133 (283)
T 3edt_B 56 QNKYKEAAHLLNDALAIREKTL--GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNL 133 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 5899999999999999863210 0123455889999999999999999999999999998 46668899999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDI--------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
|.++...|++++|+.++++++.+ .|....++..+|.++...|++++|+. ++++++++
T Consensus 134 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~l~~ 198 (283)
T 3edt_B 134 ALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET-LYKEILTR 198 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHH
Confidence 99999999999999999999999 77788999999999999999999999 99999986
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-17 Score=138.19 Aligned_cols=111 Identities=11% Similarity=-0.061 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 197 AIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 197 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
+-..+++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++.+|+.+|.++..+|+|++|+. +|++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~-~~~~al~l 99 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAAD-LYAVAFAL 99 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHH-HHHHHHhh
Confidence 33567788999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 277 DPNNEAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 277 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
+|+++.+++++|.++..+|++++|...++++.
T Consensus 100 ~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999877543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-16 Score=151.11 Aligned_cols=230 Identities=13% Similarity=0.077 Sum_probs=178.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-------HHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-------AVYYSNRA 219 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la 219 (433)
.|++++|+..|++++.+.+... ..+..+.+++.+|.++...|++++|+.++.+++.+.+.. ..++.++|
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~----~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVK----DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCC----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 5999999999999999855431 234468999999999999999999999999999985433 56899999
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----hC-CCCHHHHHHH
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDPNY------SKAYSRLGLAYYAQGNYNDAIEKGFKKALQ-----LD-PNNEAVKENI 287 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~al~-----~~-p~~~~~~~~l 287 (433)
.++..+|++++|+.+|++++.+.|.. ..++.++|.++..+|++++|+. +|+++++ .+ |....++.++
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIP-YFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHhhccchhHHHHHHHH
Confidence 99999999999999999999885543 3689999999999999999999 9999999 46 7788999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCC---hh
Q 013948 288 RMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPS---QS 364 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~---~~ 364 (433)
|.++..+|++++|..++..+..... -..+| .....+..+| .++...|+ ++
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~---------------------~~~~~-----~~~~~~~~l~-~~~~~~~~~~~~~ 323 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQ---------------------KAGDV-----IYLSEFEFLK-SLYLSGPDEEAIQ 323 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH---------------------HHTCH-----HHHHHHHHHH-HHHTSSCCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH---------------------HcCCH-----HHHHHHHHHH-HHHhCCCcHHHHH
Confidence 9999999999999998775432111 01145 5555678899 99999999 89
Q ss_pred hHHHHHhhhcCCCCCc-ccccccccccc-cCCcHHHHHHHHHHHhhc
Q 013948 365 RQGEDSNVSGSDEPGI-RIGGNINLNFG-ENMPEDITGALRSMMEMF 409 (433)
Q Consensus 365 ~A~~~~~~al~l~P~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~~~ 409 (433)
+|+..+++. ...|.. ....+++..+. ..+.+.....++...+..
T Consensus 324 ~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 324 GFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999887 333333 22222222221 355555555555554443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-15 Score=140.76 Aligned_cols=154 Identities=10% Similarity=0.074 Sum_probs=133.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|+..|.+++.+.+..+ .....+.++..+|.++...|++++|+.+|++++.+.+.. ..++.++|.
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~~----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANNR----SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6899999999999999988753 223457789999999999999999999999999985432 568999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNY------SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN------EAVKENIR 288 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~------~~~~~~l~ 288 (433)
+|.. |++++|+.+|++++.+.|.. ..++.++|.++..+|+|++|+. +|++++++.|.+ ..++..++
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA-SLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 9999 99999999999999997653 6789999999999999999999 999999986644 34677888
Q ss_pred HHHHHHHHHHHhcccccc
Q 013948 289 MAEQKLREERQRTGWDQT 306 (433)
Q Consensus 289 ~~~~~~~~~~~a~~~~~~ 306 (433)
.++..+|++++|..+++.
T Consensus 203 ~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 888888999988887764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=121.71 Aligned_cols=103 Identities=13% Similarity=0.076 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
..++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 259 QGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 259 ~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
.|++++|+. +|+++++++|++..
T Consensus 98 ~g~~~~A~~-~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALA-SLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHH-HHHHHHC-------
T ss_pred cCCHHHHHH-HHHHHHHhCcCCCC
Confidence 999999999 99999999998754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-14 Score=114.45 Aligned_cols=113 Identities=33% Similarity=0.517 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+..++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+++.+++.+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
..|++++|+. +++++++++|+++.++..++.+.
T Consensus 84 ~~~~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKR-TYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHH-HHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHH-HHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999 99999999999999999988775
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-15 Score=152.36 Aligned_cols=217 Identities=11% Similarity=0.023 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHH-hcCCCHHHH
Q 013948 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ-------SQQYS-------DAIELYSFAIA-LCGNNAVYY 215 (433)
Q Consensus 151 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~ 215 (433)
..++..|++++..+|.+ +.+|+.+|..+.. .|+++ +|+..|++|+. ++|++..+|
T Consensus 255 ~~a~~~y~~al~~~p~~----------~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHH----------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp HHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred HHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 47888999999999988 8999999999886 79987 99999999997 899999999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HH
Q 013948 216 SNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS-KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE-QK 293 (433)
Q Consensus 216 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~-~~ 293 (433)
+.+|.++...|++++|...|+++++++|.++ .+|..+|.++.+.|++++|.. .|+++++..|.....+...+.+. ..
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM-IFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHH-HHHHHHhccCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986 699999999999999999999 99999999998877776655543 23
Q ss_pred HHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhh
Q 013948 294 LREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVS 373 (433)
Q Consensus 294 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~a 373 (433)
.|+.++|...++. ++..+| +++.+|..++ .++...|+.++|...|+++
T Consensus 404 ~~~~~~A~~~~e~--------------------------al~~~p-----~~~~~~~~~~-~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 404 SKDKSVAFKIFEL--------------------------GLKKYG-----DIPEYVLAYI-DYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp TCCHHHHHHHHHH--------------------------HHHHHT-----TCHHHHHHHH-HHHTTTTCHHHHHHHHHHH
T ss_pred cCChhHHHHHHHH--------------------------HHHHCC-----CCHHHHHHHH-HHHHhCCCHhhHHHHHHHH
Confidence 5666666665442 577789 9999999999 9999999999999999999
Q ss_pred cCCCCCcc-----cccccc-cccccCCcHHHHHHHHHHHhhcC
Q 013948 374 GSDEPGIR-----IGGNIN-LNFGENMPEDITGALRSMMEMFS 410 (433)
Q Consensus 374 l~l~P~~~-----~~~~~~-~~l~~~~~~~~~~a~~~~~~~~~ 410 (433)
+...|.+. .+...+ +.....+.+.......+..+.++
T Consensus 452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99876541 221111 11113456666666666666654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=7e-16 Score=154.96 Aligned_cols=206 Identities=10% Similarity=0.059 Sum_probs=173.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ----SQQYSDAIELYSFAIALCGNNAVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 222 (433)
.+++++|+.+|+++++.. + +.+++.+|.++.. .+++++|+..|+++++. .++.+++.+|.++
T Consensus 200 ~~~~~~A~~~~~~a~~~~--~----------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y 265 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSG--D----------ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYIL 265 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT--C----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCC--C----------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 579999999999998752 2 6789999999987 88999999999999875 5788999999999
Q ss_pred HH----hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 223 TQ----IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ-----GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 223 ~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
.. .+++++|+.+|+++++. .++.+++.+|.++... +++++|+. +|+++++. .++.++..+|.++..
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~-~~~~a~~~--~~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAIS-WYTKSAEQ--GDATAQANLGAIYFR 340 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHH-HHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHH-HHHHHHhc--CCHHHHHHHHHHHHh
Confidence 98 89999999999999875 6788999999999998 99999999 99999986 567899999999987
Q ss_pred H---HHHHHhcccccccCCCccch----hhhhhhc----CCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhccccc-
Q 013948 294 L---REERQRTGWDQTTSSSHYSQ----ESNQSTG----GFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQA- 359 (433)
Q Consensus 294 ~---~~~~~a~~~~~~~~~~~~~~----~~~~~~~----~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~- 359 (433)
. .+.++|..+++++....... .+.+|.. .+++++|+..| +++ . .++.+++++| .++..
T Consensus 341 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~-----~~~~a~~~Lg-~~y~~g 412 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE--Q-----GLSAAQVQLG-EIYYYG 412 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--T-----TCHHHHHHHH-HHHHHT
T ss_pred CCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh--C-----CCHHHHHHHH-HHHHcC
Confidence 4 48889999888776332111 1456666 58899999988 554 3 3467999999 88887
Q ss_pred ---CCChhhHHHHHhhhcCCCCC
Q 013948 360 ---QPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 360 ---~g~~~~A~~~~~~al~l~P~ 379 (433)
.+++++|+.+|+++++.+|+
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCC
Confidence 89999999999999999954
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=133.16 Aligned_cols=149 Identities=21% Similarity=0.264 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...++.+|.+++..|++++|+..|++++ +| ++.+++++|.++...|++++|+..|+++++++|+++.+++.+|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 5678899999999999999999999996 34 78999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCC
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFN 337 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~ 337 (433)
..|++++|+. +|++++++.|.+.... +.. ..+...
T Consensus 83 ~~~~~~~A~~-~~~~al~~~~~~~~~~------------------~~~--------------------------~~~~~~ 117 (213)
T 1hh8_A 83 QTEKYDLAIK-DLKEALIQLRGNQLID------------------YKI--------------------------LGLQFK 117 (213)
T ss_dssp HTTCHHHHHH-HHHHHHHTTTTCSEEE------------------CGG--------------------------GTBCCE
T ss_pred HcccHHHHHH-HHHHHHHhCCCccHHH------------------HHH--------------------------hccccC
Confidence 9999999999 9999999998765211 111 035567
Q ss_pred CCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 338 TNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 338 p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
| ..+.+++++| .++..+|++++|+..|+++++++|++
T Consensus 118 ~-----~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 118 L-----FACEVLYNIA-FMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp E-----EHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred c-----cchHHHHHHH-HHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8 8999999999 99999999999999999999999985
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-15 Score=144.78 Aligned_cols=227 Identities=10% Similarity=-0.019 Sum_probs=175.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------CCCHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC--------GNNAVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l 218 (433)
.|++++|+..+++++...+..+. ......++..+|.++...|++++|+..|++++... |....++.++
T Consensus 66 ~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 141 (373)
T 1hz4_A 66 KGELTRSLALMQQTEQMARQHDV----WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 141 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence 58999999999999999887531 12336678899999999999999999999999875 3345678899
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC--CCHHHHH-----H
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDIDPN-----YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP--NNEAVKE-----N 286 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p--~~~~~~~-----~ 286 (433)
|.++...|++++|...+++++.+.|. ...++..+|.++...|++++|.. ++++++.+.+ ..+..+. .
T Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~l~~a~~~~~~~~~~~~~~~~~~~~ 220 (373)
T 1hz4_A 142 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS-QLNRLENLLGNGKYHSDWISNANKV 220 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHhccCcchhHHHHHHHH
Confidence 99999999999999999999998775 35688899999999999999999 9999998743 2221222 2
Q ss_pred HHHHHHHHHHHHHhcccccccCCCccc----------hhhhhhhcCCCCCCCCCcc--cccCCCC-CCCccHHHHHHHHh
Q 013948 287 IRMAEQKLREERQRTGWDQTTSSSHYS----------QESNQSTGGFRSHGTPPSF--TMPFNTN-ALPTDIASMLMNMA 353 (433)
Q Consensus 287 l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~~A~~~~--al~~~p~-~~~~~~~~a~~~la 353 (433)
++.++...|+.++|..+...+...... ..+..+...|++++|+..+ ++...+. ..+.....++..+|
T Consensus 221 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la 300 (373)
T 1hz4_A 221 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 344577888999988887666532111 1245677789999999888 5444331 01113445888889
Q ss_pred hcccccCCChhhHHHHHhhhcCCCCC
Q 013948 354 SNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
.++..+|++++|...+++++.+.+.
T Consensus 301 -~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 301 -QLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp -HHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999887664
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-14 Score=114.29 Aligned_cols=117 Identities=42% Similarity=0.627 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...++.+|.++...|++++|+..|.+++..+|++..+++.+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLR 295 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 295 (433)
..|++++|+. +++++++.+|.++.++..++.++...|
T Consensus 89 ~~~~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIE-YYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999 999999999999999999999887653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-15 Score=150.56 Aligned_cols=203 Identities=13% Similarity=0.096 Sum_probs=169.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ----SQQYSDAIELYSFAIALCGNNAVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 222 (433)
.+++++|+.+|+++++. .+ +.+++.+|.++.. .+++++|+..|+++++. .++.+++.+|.+|
T Consensus 128 ~~~~~~A~~~~~~a~~~--~~----------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y 193 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQ--GR----------DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMY 193 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TC----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--CC----------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 47899999999999775 22 7889999999988 88999999999999876 5899999999999
Q ss_pred HH----hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 013948 223 TQ----IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA----QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK- 293 (433)
Q Consensus 223 ~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~- 293 (433)
.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+. +|+++++. .++.++..++.++..
T Consensus 194 ~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~-~~~~a~~~--~~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 194 SRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRV-LFSQSAEQ--GNSIAQFRLGYILEQG 268 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH-HHHHHHTT--TCHHHHHHHHHHHHHT
T ss_pred hcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHHC--CCHHHHHHHHHHHHCC
Confidence 98 89999999999999885 578899999999997 899999999 99999875 568899999999988
Q ss_pred ---HHHHHHhcccccccCCCccc----hhhhhhhcC-----CCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhccccc
Q 013948 294 ---LREERQRTGWDQTTSSSHYS----QESNQSTGG-----FRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQA 359 (433)
Q Consensus 294 ---~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~-----~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~ 359 (433)
.++.++|..+++.+...... ..+.+|... +++++|+..| +++..+ +.+++++| .++..
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg-~~y~~ 340 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD-------ATAQANLG-AIYFR 340 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC-------HHHHHHHH-HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC-------HHHHHHHH-HHHHh
Confidence 78899999988877533221 125667666 8899999888 665444 56888999 88877
Q ss_pred CC---ChhhHHHHHhhhcCC
Q 013948 360 QP---SQSRQGEDSNVSGSD 376 (433)
Q Consensus 360 ~g---~~~~A~~~~~~al~l 376 (433)
.| ++++|+.+|+++++.
T Consensus 341 ~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHHT
T ss_pred CCCcccHHHHHHHHHHHHHC
Confidence 66 789999999999987
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-14 Score=116.30 Aligned_cols=122 Identities=35% Similarity=0.560 Sum_probs=99.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..+++++...|.+ ...+..+|.++...|++++|+..|++++...|.+..+++.+|.++...|
T Consensus 14 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 14 QGDYDEAIEYYQKALELDPRS----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred cCcHHHHHHHHHHHHHcCCcc----------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 477888888888888877665 6677778888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~ 279 (433)
++++|+..+++++...|.+..++..+|.++...|++++|+. ++++++..+|+
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~~~~ 135 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE-YYQKALELDPR 135 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHH-HHHHHHccCCC
Confidence 88888888888888888888888888888888888888888 88888887775
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=137.53 Aligned_cols=215 Identities=13% Similarity=0.015 Sum_probs=157.9
Q ss_pred chhHHHHHHHHHHhhcCCCCCCCCCCCC-------chHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCc
Q 013948 35 LEGLEVARECLTEVFKLDSPSADGQRKP-------DSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGE 107 (433)
Q Consensus 35 ~~~~e~A~~~~~kAl~ldP~~~~~~~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (433)
+.++.+|+++|.+|+++||+..+++... +.++.................. ..|.+......+..
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~---------l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ---------ISMSTLNARIAIGG 89 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT---------CCGGGGCCEEECCT
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc---------CChhhhhhhhccCC
Confidence 4669999999999999999999888766 4444444444433322111111 22333322222111
Q ss_pred cc--ccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHH
Q 013948 108 DW--TEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQG 185 (433)
Q Consensus 108 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg 185 (433)
.+ ...+ -.+...+.-.+...+.. .|++++|.+.|..++...|.. . ..+.+|
T Consensus 90 ~y~~~~~~---v~~r~dl~LayA~~L~~-------------~g~y~eA~~~l~~~~~~~p~~----------~-~~~~~a 142 (282)
T 4f3v_A 90 LYGDITYP---VTSPLAITMGFAACEAA-------------QGNYADAMEALEAAPVAGSEH----------L-VAWMKA 142 (282)
T ss_dssp TTCCCEEE---CSSHHHHHHHHHHHHHH-------------HTCHHHHHHHHTSSCCTTCHH----------H-HHHHHH
T ss_pred cccccccc---cCCHhHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHhcCCch----------H-HHHHHH
Confidence 11 1111 12345555555555555 799999999999988876654 6 899999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC--CC-cHHHHHHHHHHHHHcC
Q 013948 186 NRVMQSQQYSDAIELYSFAIALCGNN--AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID--PN-YSKAYSRLGLAYYAQG 260 (433)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~g 260 (433)
.+++..++|++|+..|++++...+.. ..+++++|.++..+|++++|+.+|++++... |. .+.+++.+|.++..+|
T Consensus 143 ~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 143 VVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG 222 (282)
T ss_dssp HHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC
Confidence 99999999999999999887643221 3589999999999999999999999999665 65 6789999999999999
Q ss_pred CHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013948 261 NYNDAIEKGFKKALQLDPNNEAVKENI 287 (433)
Q Consensus 261 ~~~~A~~~~~~~al~~~p~~~~~~~~l 287 (433)
+.++|.. .|++++..+|+ +.++..|
T Consensus 223 r~deA~~-~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 223 NESAAVA-LLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp CHHHHHH-HHHHHHHHSCC-HHHHHHH
T ss_pred CHHHHHH-HHHHHHhcCCc-HHHHHHH
Confidence 9999999 99999999999 7776666
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=147.27 Aligned_cols=141 Identities=12% Similarity=0.020 Sum_probs=132.6
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ--QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
..++++++.+.+++..+|++ ..+|+.++.++...+ +++++++.+.++++.+|.+..+|..++.++...
T Consensus 87 ~~~~~eL~~~~~~l~~~pK~----------y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l 156 (567)
T 1dce_A 87 ALVKAELGFLESCLRVNPKS----------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA 156 (567)
T ss_dssp HHHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 35899999999999999998 999999999999999 779999999999999999999999999999999
Q ss_pred h-cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013948 226 H-QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ--------------GNYNDAIEKGFKKALQLDPNNEAVKENIRMA 290 (433)
Q Consensus 226 ~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~ 290 (433)
| .++++++++.++++.+|.+..+|..+|.++..+ +.++++++ ++.+++.++|++..+|..++.+
T Consensus 157 ~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~-~~~~ai~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 157 AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE-LVQNAFFTDPNDQSAWFYHRWL 235 (567)
T ss_dssp CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHH-HHHHHHHHCSSCSHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHH-HHHHHHhhCCCCccHHHHHHHH
Confidence 9 999999999999999999999999999999985 66899999 9999999999999999999999
Q ss_pred HHHHHHHHH
Q 013948 291 EQKLREERQ 299 (433)
Q Consensus 291 ~~~~~~~~~ 299 (433)
+...+++++
T Consensus 236 l~~~~~~~~ 244 (567)
T 1dce_A 236 LGRAEPHDV 244 (567)
T ss_dssp HSCCCCCSC
T ss_pred HhcCCCccc
Confidence 887776444
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.2e-16 Score=144.86 Aligned_cols=180 Identities=16% Similarity=0.124 Sum_probs=152.4
Q ss_pred chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc---
Q 013948 173 NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL--------CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI--- 241 (433)
Q Consensus 173 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 241 (433)
..|....++..+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+.++++++.+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34666899999999999999999999999999995 5666889999999999999999999999999988
Q ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 242 -----DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD--------PNNEAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 242 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
.|....++..+|.++...|++++|+. ++++++++. |....++..+|.++...|++++|..++..+.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEP-LCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46678899999999999999999999 999999874 5567789999999999999999998877433
Q ss_pred CCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCC
Q 013948 309 SSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~ 377 (433)
...... .-..+| ....++..+| .++..+|++++|+..++++++..
T Consensus 181 ~~~~~~------------------~~~~~~-----~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 181 EIYQTK------------------LGPDDP-----NVAKTKNNLA-SCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHHT------------------SCTTCH-----HHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHH------------------hCCCCH-----HHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHH
Confidence 110000 002256 8888999999 99999999999999999998753
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-15 Score=148.86 Aligned_cols=187 Identities=9% Similarity=0.011 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHcc---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh----hcHHHHHHHHHHHHhcCCCcHHHHHH
Q 013948 179 EIFKCQGNRVMQSQ---QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI----HQYAEAVRDCLKSIDIDPNYSKAYSR 251 (433)
Q Consensus 179 ~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~ 251 (433)
.+++.+|.++...| ++++|+..|+++.+..|..+..++++|.+|... +++++|+.+|+++. |.++.+++.
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 37888888888888 888899999999888888888888888888665 68889999998887 888888899
Q ss_pred HHHH-H--HHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH-----HHHHhcccccccCCCccchh-----hhh
Q 013948 252 LGLA-Y--YAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLR-----EERQRTGWDQTTSSSHYSQE-----SNQ 318 (433)
Q Consensus 252 lg~~-~--~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~-----~~~ 318 (433)
+|.+ + ...+++++|+. +|+++.+. +++.++.+||.++. .| ++++|..+++++. +.... +.+
T Consensus 254 Lg~~~~~~~~~~d~~~A~~-~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMK-YLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQI 327 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHH-HHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHH-HHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 9888 4 46788899998 88888854 47888888888887 55 7888888888777 33222 344
Q ss_pred hhcC----CCCCCCCCcccccCCCCCCCccHHHHHHHHhhccccc----CCChhhHHHHHhhhcCCCCCc
Q 013948 319 STGG----FRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQA----QPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 319 ~~~~----~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~----~g~~~~A~~~~~~al~l~P~~ 380 (433)
|..+ .++++|+..|....++ .++.+.+++| .+|.. ..+..+|..+|++|.+..+..
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~-----g~~~A~~~Lg-~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARN-----GQNSADFAIA-QLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTT-----TCTTHHHHHH-HHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhh-----ChHHHHHHHH-HHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 5553 4777777777222234 5567889999 77763 568999999999999987665
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-14 Score=116.53 Aligned_cols=128 Identities=33% Similarity=0.484 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
.+++.+|.++...|++++|+..|++++..+|++..+++.+|.++...|++++|+..+++++...|.++.+++.+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 259 QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 259 ~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
.|++++|+. +++++++..|.+..++..++.++...|++++|..++..+
T Consensus 82 ~~~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIE-YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 999999999 999999999999999999999999999999998876643
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-14 Score=114.65 Aligned_cols=118 Identities=30% Similarity=0.454 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc-------HHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY-------SKAYS 250 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~ 250 (433)
+..++.+|.+++..|++++|+..|.+++..+|.++.+++++|.++...|++++|+.++++++.+.|.+ +.+++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999998887 99999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013948 251 RLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297 (433)
Q Consensus 251 ~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 297 (433)
.+|.++...|++++|+. +|++++++.| ++..+..++.+...+++.
T Consensus 84 ~la~~~~~~~~~~~A~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIH-FYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHTTCHHHHHH-HHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHH-HHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 9999999999 688999999888877653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-16 Score=146.02 Aligned_cols=201 Identities=12% Similarity=0.026 Sum_probs=174.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH-------HHHHHHccCHHHHHHHHHHHHHhcCCCHH------
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQ-------GNRVMQSQQYSDAIELYSFAIALCGNNAV------ 213 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l-------g~~~~~~~~~~~A~~~~~~al~~~p~~~~------ 213 (433)
.+++..|...|.+++..+|.. +++|..+ +.++...+++.+++..+++++.+.|....
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~----------~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESA----------CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred CCCHHHHHHHHHHHHHhChhh----------hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 489999999999999999988 9999999 89999999999999999999998876543
Q ss_pred ---------------HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 214 ---------------YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 214 ---------------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
++..++.++...|+|++|.+.|..++...|.+. +.+.+|.++++.++|++|+. .|++++...+
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~-~l~~a~~~~d 166 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVID-QVKSAGKWPD 166 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHH-HHTTGGGCSC
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHH-HHHHhhccCC
Confidence 444588999999999999999999999999999 99999999999999999999 9998877542
Q ss_pred CC--HHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCcc-HHHHHHHHhhc
Q 013948 279 NN--EAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTD-IASMLMNMASN 355 (433)
Q Consensus 279 ~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~-~~~a~~~la~~ 355 (433)
.. ..+++.+|.++..+|++++|..++.++... ..+| . .+.+++.+| .
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g------------------------~~~P-----~~~~da~~~~g-l 216 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDS------------------------PAGE-----ACARAIAWYLA-M 216 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------------------------TTTT-----TTHHHHHHHHH-H
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC------------------------CCCc-----cccHHHHHHHH-H
Confidence 21 358999999999999999999998854321 1125 4 778999999 9
Q ss_pred ccccCCChhhHHHHHhhhcCCCCCccccccccccc
Q 013948 356 MPQAQPSQSRQGEDSNVSGSDEPGIRIGGNINLNF 390 (433)
Q Consensus 356 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~~~l 390 (433)
++..+|+.++|...|+++++.+|+ ......+...
T Consensus 217 aL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 217 ARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 999999999999999999999999 6655555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-14 Score=126.31 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=114.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++ .| + +.+++.+|.++...|++++|+..|++++..+|+++.+++++|.++..+|
T Consensus 19 ~~~~~~A~~~~~~a~--~~-~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ--DP-H----------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp TTCHHHHHHHHHTSS--SC-C----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHc--CC-C----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 589999999999996 22 2 6799999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYS----------------KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
++++|+..|++++++.|.+. .+++.+|.++...|++++|+. +|+++++++|++..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE-QLALATSMKSEPRH 156 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTTCCSGGG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH-HHHHHHHcCccccc
Confidence 99999999999999888766 999999999999999999999 99999999998744
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=140.34 Aligned_cols=195 Identities=11% Similarity=0.037 Sum_probs=163.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-------CHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN-------NAVYYSNRA 219 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la 219 (433)
.|++++|+..|++++.+.+... ..+..+.+++.+|.++...|++++|+.++.+++.+.+. .+.+++++|
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~----~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVS----DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCC----ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 6999999999999999876542 23556889999999999999999999999999988553 256889999
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----hCCCCHHHHHHHH
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDP------NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ-----LDPNNEAVKENIR 288 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~-----~~p~~~~~~~~l~ 288 (433)
.++..+|++++|+.+|++++.+.+ ....++.++|.++..+|++++|+. +|+++++ .+|....++..+|
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE-HFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHhhCChhHHHHHHHHH
Confidence 999999999999999999999743 135689999999999999999999 9999999 7888899999999
Q ss_pred HHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCC---hhh
Q 013948 289 MAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPS---QSR 365 (433)
Q Consensus 289 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~---~~~ 365 (433)
.++..+|++++|..+++++..... -..+| .....+..++ .++...|+ +.+
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~---------------------~~~~~-----~~~~~~~~l~-~ly~~~~~~~~~~~ 321 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHIT---------------------ARSHK-----FYKELFLFLQ-AVYKETVDERKIHD 321 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC---------------------TTCCS-----CHHHHHHHHH-HHHSSSCCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHH---------------------HcCCH-----HHHHHHHHHH-HHHhCCCcHHHHHH
Confidence 999999999999998774331100 11134 6666778888 88999999 899
Q ss_pred HHHHHhhh
Q 013948 366 QGEDSNVS 373 (433)
Q Consensus 366 A~~~~~~a 373 (433)
|+..+++.
T Consensus 322 al~~~~~~ 329 (378)
T 3q15_A 322 LLSYFEKK 329 (378)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 99888873
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-14 Score=114.79 Aligned_cols=114 Identities=15% Similarity=0.191 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHHH
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA---VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSRL 252 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 252 (433)
.+++.+|.+++..|++++|+..|++++..+|++. .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578899999999999999999999999999998 899999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 253 GLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 253 g~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
|.++..+|++++|+. +|+++++..|+++.+......+...
T Consensus 83 a~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQ-TLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHTTCHHHHHH-HHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHH-HHHHHHHHCCCChHHHHHHHHHHHH
Confidence 999999999999999 9999999999999877766655443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-15 Score=132.75 Aligned_cols=176 Identities=10% Similarity=0.007 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh----c
Q 013948 152 KASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH----Q 227 (433)
Q Consensus 152 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~ 227 (433)
+|+.+|+++.+. .+ +.+++.+|.++...+++++|+.+|+++++. .++.+++++|.+|.. + +
T Consensus 4 eA~~~~~~aa~~--g~----------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~ 68 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GD----------RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQAD 68 (212)
T ss_dssp CTTHHHHHHHHT--TC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCC
T ss_pred hHHHHHHHHHHC--CC----------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCC
Confidence 577788888875 33 889999999999999999999999999875 689999999999998 7 9
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----HHHH
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA----QGNYNDAIEKGFKKALQLDP--NNEAVKENIRMAEQK----LREE 297 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~al~~~p--~~~~~~~~l~~~~~~----~~~~ 297 (433)
+++|+.+|++++. +.++.+++.||.+|.. .+++++|+. +|+++++..| .++.++.+||.++.. .+++
T Consensus 69 ~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~-~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~ 145 (212)
T 3rjv_A 69 YPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAIT-LLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD 145 (212)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHH-HHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHH-HHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence 9999999999965 6799999999999998 899999999 9999999988 459999999999988 6678
Q ss_pred HHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccC-C-----ChhhHHHHHh
Q 013948 298 RQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQ-P-----SQSRQGEDSN 371 (433)
Q Consensus 298 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~-g-----~~~~A~~~~~ 371 (433)
++|..++++ ++.. | .++.+++++| .+|... | ++++|+.+|+
T Consensus 146 ~~A~~~~~~--------------------------A~~~-~-----~~~~a~~~Lg-~~y~~g~gg~~~~d~~~A~~~~~ 192 (212)
T 3rjv_A 146 VKASEYFKG--------------------------SSSL-S-----RTGYAEYWAG-MMFQQGEKGFIEPNKQKALHWLN 192 (212)
T ss_dssp HHHHHHHHH--------------------------HHHT-S-----CTTHHHHHHH-HHHHHCBTTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHH--------------------------HHHc-C-----CCHHHHHHHH-HHHHcCCCCCCCCCHHHHHHHHH
Confidence 888887764 2333 4 4556899999 777643 3 8999999999
Q ss_pred hhcCCCC
Q 013948 372 VSGSDEP 378 (433)
Q Consensus 372 ~al~l~P 378 (433)
++++..+
T Consensus 193 ~A~~~g~ 199 (212)
T 3rjv_A 193 VSCLEGF 199 (212)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 9987643
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-14 Score=137.07 Aligned_cols=125 Identities=25% Similarity=0.415 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------hcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIA----------------LCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
+..+..+|..++..|+|++|+..|+++++ .+|.+..+|+++|.++.++|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 77899999999999999999999999999 77888999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 013948 242 DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGW 303 (433)
Q Consensus 242 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 303 (433)
+|+++.+++.+|.++..+|++++|+. +|+++++++|++..++..++.++..+++.+++...
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~-~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALA-DLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 99999999999999999999999999998877553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-14 Score=117.14 Aligned_cols=114 Identities=26% Similarity=0.401 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
.+..++.+|..++..|++++|+..|++++..+|++ ..+++++|.++...|++++|+..+++++.++|+++.+++.+|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 37889999999999999999999999999999988 899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 254 LAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
.++...|++++|+. +|+++++++|++..++..++.+.
T Consensus 107 ~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 107 QALEKLGRLDQAVL-DLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHTCHHHHHH-HHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHH-HHHHHHHcCCCcHHHHHHHHHHH
Confidence 99999999999999 99999999999999998887764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.5e-15 Score=141.25 Aligned_cols=225 Identities=7% Similarity=-0.086 Sum_probs=180.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|+..+++++...|... ......++..+|.++...|++++|+..+++++.+.|.. ..++.++|.
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGW-----FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTC-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCc-----hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5899999999999999876431 22345678899999999999999999999999886543 245789999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC-----CHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDID--------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN-----NEAVKENI 287 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~-----~~~~~~~l 287 (433)
++...|++++|+..+++++.+. |....++..+|.++...|++++|.. ++++++.+.+. ...++..+
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA-SARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHHhhccCcHHHHHHHHHH
Confidence 9999999999999999999875 3456788899999999999999999 99999998775 34678899
Q ss_pred HHHHHHHHHHHHhcccccccCC---Ccc---chh-------hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHH
Q 013948 288 RMAEQKLREERQRTGWDQTTSS---SHY---SQE-------SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNM 352 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~~~~---~~~---~~~-------~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~l 352 (433)
+.++...|++++|...+..+.. ... ... ...+...|++++|...+ ++...|.. +......+..+
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~l 259 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN-NHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT-CGGGHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCc-chhhHHHHHHH
Confidence 9999999999999888665431 111 111 13366789999999988 77666621 11224467888
Q ss_pred hhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 353 ASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 353 a~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
+ .++..+|++++|...+++++...+.
T Consensus 260 a-~~~~~~g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 260 A-RAQILLGEFEPAEIVLEELNENARS 285 (373)
T ss_dssp H-HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 9 9999999999999999999877544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-15 Score=126.06 Aligned_cols=111 Identities=14% Similarity=0.018 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 196 DAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 196 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
.+-..|++++.++|++..+++.+|.++...|++++|+..|++++.++|+++.+|+.+|.++...|++++|+. +|++++.
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~ 83 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIH-SYSYGAV 83 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHH-HHHHHHh
Confidence 334568899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 276 LDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 276 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
++|+++.+++.+|.++..+|++++|..++..+
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999887754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.4e-15 Score=147.06 Aligned_cols=215 Identities=10% Similarity=0.070 Sum_probs=162.8
Q ss_pred chHHHHHHHHHHHHHHHhhccccc-----------------------cchhhHHHHHHHHHHHHHHccCH----HHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHA-----------------------YNQKNLAEIFKCQGNRVMQSQQY----SDAIEL 200 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~-----------------------~~~~~~~~~~~~lg~~~~~~~~~----~~A~~~ 200 (433)
+++++|+.+|+++++..+...... ......+.+++.+|.++...+.+ +++..+
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 588888888888887432211000 00111245677778888777744 444444
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhh---cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 013948 201 YSFAIALCGNNAVYYSNRAAAYTQIH---QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ----GNYNDAIEKGFKKA 273 (433)
Q Consensus 201 ~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~~a 273 (433)
+..+...+| .+++++|.+|...| ++++|+.+|+++...+|.....++.+|.+|... +++++|+. +|+++
T Consensus 168 ~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~-~~~~a 243 (452)
T 3e4b_A 168 CKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA-LLEKI 243 (452)
T ss_dssp HHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH-HHHHH
T ss_pred HHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH-HHHHH
Confidence 555544444 49999999999999 999999999999999999999999999999776 79999999 99999
Q ss_pred HhhCCCCHHHHHHHHHH-H--HHHHHHHHhcccccccCCCccch----hhhhhhcC----CCCCCCCCcc--cccCCCCC
Q 013948 274 LQLDPNNEAVKENIRMA-E--QKLREERQRTGWDQTTSSSHYSQ----ESNQSTGG----FRSHGTPPSF--TMPFNTNA 340 (433)
Q Consensus 274 l~~~p~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~----~~~~~A~~~~--al~~~p~~ 340 (433)
. |+++.+++++|.+ + ...+++++|..+++++....... .+.+|..+ .++++|+..| +. |
T Consensus 244 a---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~-- 315 (452)
T 3e4b_A 244 A---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---G-- 315 (452)
T ss_dssp G---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---T--
T ss_pred c---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---C--
Confidence 8 9999999999999 4 45678999999988776322211 14555533 3899999999 55 8
Q ss_pred CCccHHHHHHHHhhccccc----CCChhhHHHHHhhhcCCCC
Q 013948 341 LPTDIASMLMNMASNMPQA----QPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 341 ~~~~~~~a~~~la~~~~~~----~g~~~~A~~~~~~al~l~P 378 (433)
.++.+++++| .+|.. ..++++|+.+|+++.+...
T Consensus 316 ---g~~~A~~~Lg-~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 316 ---REVAADYYLG-QIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp ---TCHHHHHHHH-HHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred ---CCHHHHHHHH-HHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 8899999999 88776 4499999999999988643
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-16 Score=148.52 Aligned_cols=153 Identities=16% Similarity=0.077 Sum_probs=141.2
Q ss_pred HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---------------HHHHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---------------SKAYSRLGL 254 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~ 254 (433)
..+++++|+..|++++..+|+++.+++++|.++...|++++|+..|+++++++|.+ ..+|+++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999999999999999999999999999999999999999999999 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccc
Q 013948 255 AYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTM 334 (433)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al 334 (433)
++..+|++++|+. +|+++++++|+++.+++.+|.++..+|++++|...+.+ ++
T Consensus 205 ~~~~~g~~~~A~~-~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~--------------------------al 257 (336)
T 1p5q_A 205 CHLKLQAFSAAIE-SCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQK--------------------------VL 257 (336)
T ss_dssp HHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------HH
T ss_pred HHHHcCCHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH--------------------------HH
Confidence 9999999999999 99999999999999999999999999999999887663 67
Q ss_pred cCCCCCCCccHHHHHHHHhhcccccCCChhhH-HHHHhhhcC
Q 013948 335 PFNTNALPTDIASMLMNMASNMPQAQPSQSRQ-GEDSNVSGS 375 (433)
Q Consensus 335 ~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A-~~~~~~al~ 375 (433)
.++| ++..++..++ .++..+|++++| ...|++.+.
T Consensus 258 ~l~P-----~~~~a~~~l~-~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 258 QLYP-----NNKAAKTQLA-VCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHCS-----SCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCC-----CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 7899 9999999999 999999999999 456666653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=155.92 Aligned_cols=283 Identities=11% Similarity=0.061 Sum_probs=192.8
Q ss_pred CCCchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCccccc
Q 013948 32 GVDLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTE 111 (433)
Q Consensus 32 ~~~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (433)
..+.+.+++|+.+|+|+- .+.. ....+++...+.+++.+..-
T Consensus 1059 ai~lglyEEAf~IYkKa~--~~~~-----A~~VLie~i~nldrAiE~Ae------------------------------- 1100 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD--VNTS-----AVQVLIEHIGNLDRAYEFAE------------------------------- 1100 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC--CHHH-----HHHHHHHHHhhHHHHHHHHH-------------------------------
Confidence 347788999999999983 1111 12334444455555544110
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc
Q 013948 112 EPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS 191 (433)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~ 191 (433)
......++.++..+... .|++++|+..|.++ ++ +..|..+|.++...
T Consensus 1101 -----rvn~p~vWsqLAKAql~-------------~G~~kEAIdsYiKA-----dD----------~say~eVa~~~~~l 1147 (1630)
T 1xi4_A 1101 -----RCNEPAVWSQLAKAQLQ-------------KGMVKEAIDSYIKA-----DD----------PSSYMEVVQAANTS 1147 (1630)
T ss_pred -----hcCCHHHHHHHHHHHHh-------------CCCHHHHHHHHHhc-----CC----------hHHHHHHHHHHHHc
Confidence 01123444555555555 78899999998776 33 67888899999999
Q ss_pred cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013948 192 QQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFK 271 (433)
Q Consensus 192 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 271 (433)
|+|++|+++|..|++..++ +.+-..+|.+|.+++++++ ++.|- ...+...+..+|..+...|+|++|.. +|.
T Consensus 1148 GkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~-~Y~ 1219 (1630)
T 1xi4_A 1148 GNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKL-LYN 1219 (1630)
T ss_pred CCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHH-HHH
Confidence 9999999999998887743 2333357888888887774 44442 23344566778888888888888888 888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCcc-chhhhhhhcCCCCCCCCCcc-cccCCCCCCCccHHHHH
Q 013948 272 KALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHY-SQESNQSTGGFRSHGTPPSF-TMPFNTNALPTDIASML 349 (433)
Q Consensus 272 ~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~-al~~~p~~~~~~~~~a~ 349 (433)
++ ..|..++.++.++|++++|...+.++..... ......+...|+|..|.... .+..+| + .+
T Consensus 1220 kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~-----d---eL 1283 (1630)
T 1xi4_A 1220 NV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----D---EL 1283 (1630)
T ss_pred hh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCH-----H---HH
Confidence 85 4788888888888888888888877753321 11134456667777777766 666667 4 34
Q ss_pred HHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccccCCcHHHHHHHHHHHhhcC
Q 013948 350 MNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFGENMPEDITGALRSMMEMFS 410 (433)
Q Consensus 350 ~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~ 410 (433)
..++ ..|...|.+++|+..+++++.++|.. .....+........++++.+.++.+.++..
T Consensus 1284 eeli-~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1284 EELI-NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHH-HHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 4777 88888999999999999999999876 333222221126788888888877776654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=119.54 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=93.4
Q ss_pred HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 013948 190 QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY----------AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ 259 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 259 (433)
+.+.|++|+..|+++++++|+++.+|+++|.++..++++ ++|+..|+++|+++|+++.+|+++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999999875 5999999999999999999999999999988
Q ss_pred C-----------CHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 260 G-----------NYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 260 g-----------~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
| ++++|+. +|++|++++|++...+..+..+-
T Consensus 94 g~l~P~~~~a~g~~~eA~~-~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQ-FFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHH-HHHHHHHhCCCCHHHHHHHHHHH
Confidence 5 8999999 99999999999988877776554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-13 Score=115.91 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=110.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|.+++..+|+++.+++++|.++..+|
T Consensus 26 ~~~~~~A~~~~~~al~~~~~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 26 AKDYENAIKFYSQAIELNPSN----------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 95 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHhCCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 589999999999999999887 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHhh
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGL--AYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~--~~~~~g~~~~A~~~~~~~al~~ 276 (433)
++++|+.+|+++++++|.+..++..++. .+...|++++|+. .+.++..+
T Consensus 96 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~ 146 (166)
T 1a17_A 96 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA-GDEHKRSV 146 (166)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH-cccchHHH
Confidence 9999999999999999999988855544 4888999999999 88876543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.1e-14 Score=132.66 Aligned_cols=177 Identities=10% Similarity=0.002 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh-cHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH-QYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
..++..+..+....+..++|++.+.++|.++|++..+|+.++.++..++ .+++++..+++++..+|++..+|..++.++
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL 133 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3444444444445566779999999999999999999999999999999 599999999999999999999999999999
Q ss_pred HHc-C-CHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH--------HhcccccccCCCccchhhhhhhcCCCCC
Q 013948 257 YAQ-G-NYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER--------QRTGWDQTTSSSHYSQESNQSTGGFRSH 326 (433)
Q Consensus 257 ~~~-g-~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (433)
... + ++++++. .+.++++.+|.+..+|...+.+...++.++ ++..+..+
T Consensus 134 ~~l~~~~~~~EL~-~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k-------------------- 192 (349)
T 3q7a_A 134 DRISPQDPVSEIE-YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNE-------------------- 192 (349)
T ss_dssp HHHCCSCCHHHHH-HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH--------------------
T ss_pred HHhcCCChHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHH--------------------
Confidence 998 8 9999999 999999999999999999999999998876 33333221
Q ss_pred CCCCcccccCCCCCCCccHHHHHHHHhhcccccCCC-------hhhHHHHHhhhcCCCCCc-ccccccc
Q 013948 327 GTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPS-------QSRQGEDSNVSGSDEPGI-RIGGNIN 387 (433)
Q Consensus 327 ~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~-------~~~A~~~~~~al~l~P~~-~~~~~~~ 387 (433)
++..+| .+..+|..++ .++..+++ ++++++++.+++.++|++ +.+..+.
T Consensus 193 ------~I~~dp-----~N~SAW~~R~-~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr 249 (349)
T 3q7a_A 193 ------MLRVDG-----RNNSAWGWRW-YLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLR 249 (349)
T ss_dssp ------HHHHCT-----TCHHHHHHHH-HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ------HHHhCC-----CCHHHHHHHH-HHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 678899 9999999999 99998887 799999999999999999 5554433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-13 Score=127.98 Aligned_cols=172 Identities=11% Similarity=0.000 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc------
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA------VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY------ 245 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------ 245 (433)
...+...+..+...|+|++|++.+.+++...+... ..++.+|.++...|++++|+.++++++...+..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 56777889999999999999999999999887654 456778999999999999999999999876543
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhh
Q 013948 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKAL---QLDPNNE----AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQ 318 (433)
Q Consensus 246 ~~~~~~lg~~~~~~g~~~~A~~~~~~~al---~~~p~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 318 (433)
..++..+|.+|...|++++|+. +|++++ +..|++. .++.++|.++..+|++++|..++.++.....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~-~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~------ 227 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGID-LFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC------ 227 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH------
Confidence 6789999999999999999999 999999 5566643 6889999999999999999998875432110
Q ss_pred hhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhH-HHHHhhhcCC
Q 013948 319 STGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQ-GEDSNVSGSD 376 (433)
Q Consensus 319 ~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A-~~~~~~al~l 376 (433)
...... ..+.+++++| .++..+|++++| ..+|++|+.+
T Consensus 228 --------------~~~~~~-----~~~~~~~~lg-~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 228 --------------RINSMA-----LIGQLYYQRG-ECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp --------------HTTBCS-----SHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHH
T ss_pred --------------hcCcHH-----HHHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHHH
Confidence 111223 5688999999 999999999999 7889999764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-14 Score=144.58 Aligned_cols=128 Identities=29% Similarity=0.487 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
.+.+++.+|.+++..|++++|+..|+++++++|++..+|+++|.++..+|++++|+..|+++++++|+++.+++++|.++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 36778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHHHhccccc
Q 013948 257 YAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA--EQKLREERQRTGWDQ 305 (433)
Q Consensus 257 ~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 305 (433)
..+|++++|+. +|+++++++|++..++..++.+ +...|++++|...+.
T Consensus 85 ~~~g~~~eA~~-~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALR-DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHH-HHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999 9999999999999999999998 778899999988876
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-13 Score=108.71 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=98.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++..+|.+ +.+++.+|.++...|++++|+..|++++.++|+++.+|+++|.++..+|
T Consensus 17 ~~~~~~A~~~~~~al~~~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 17 KSDWPNAVKAYTEMIKRAPED----------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHhCCCC----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 599999999999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHc
Q 013948 227 QYAEAVRDCLKSIDID------PNYSKAYSRLGLAYYAQ 259 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~ 259 (433)
++++|+..|+++++++ |.+..++..++.+...+
T Consensus 87 ~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 87 EYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999999999999999 99999999998887653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-14 Score=118.48 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC-------cHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN-------YSK-----AYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 211 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
.+..+.++|.++...|+|++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+. ++.++|++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~-~~~kAL~l-- 86 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALH-SADKALHY-- 86 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH--
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHh--
Confidence 3567899999999999999999999999999999 444 99999999999999999999 99999986
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHH----HHHhh
Q 013948 279 NNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASML----MNMAS 354 (433)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~----~~la~ 354 (433)
+.. +++++| +++.+| +++|
T Consensus 87 ------------------~n~---------------------------------~~e~~p-----d~~~A~~~~~~~rG- 109 (159)
T 2hr2_A 87 ------------------FNR---------------------------------RGELNQ-----DEGKLWISAVYSRA- 109 (159)
T ss_dssp ------------------HHH---------------------------------HCCTTS-----THHHHHHHHHHHHH-
T ss_pred ------------------hhc---------------------------------cccCCC-----chHHHHHHHHHhHH-
Confidence 121 367899 999999 9999
Q ss_pred cccccCCChhhHHHHHhhhcCCCCCccc
Q 013948 355 NMPQAQPSQSRQGEDSNVSGSDEPGIRI 382 (433)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~al~l~P~~~~ 382 (433)
.++..+|++++|+.+|+++++++|++..
T Consensus 110 ~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 110 LALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 9999999999999999999999999733
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-14 Score=119.57 Aligned_cols=109 Identities=11% Similarity=0.053 Sum_probs=101.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 199 ELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 199 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
..|.+++.++|++...++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+. +|++++.++|
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~p 83 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQ-SYSYGALMDI 83 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcCC
Confidence 567888999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 279 NNEAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
+++.++..+|.++..+|++++|..++..+.
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999877543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.4e-14 Score=109.26 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC--cHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN--YSKAYSRLGLA 255 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~ 255 (433)
..+++.+|.+++..|++++|+..|++++..+|.+..+++++|.++...|++++|+..++++++.+|. +..+++.+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHc-CCHHHHHHHHHHHHHhhCCCCH
Q 013948 256 YYAQ-GNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 256 ~~~~-g~~~~A~~~~~~~al~~~p~~~ 281 (433)
+... |++++|+. ++++++...|.++
T Consensus 86 ~~~~~~~~~~A~~-~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEI-AEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHH-HHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHH-HHHHHhhcccCCC
Confidence 9999 99999999 9999999998753
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=114.52 Aligned_cols=90 Identities=13% Similarity=0.146 Sum_probs=84.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhcCCCHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQY----------SDAIELYSFAIALCGNNAVYYS 216 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~ 216 (433)
.+.|++|++.++++++++|.+ +.+|+.+|.++...+++ ++|+..|++||+++|++..+|+
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~----------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~ 84 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLD----------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHH
Confidence 579999999999999999998 99999999999988775 5999999999999999999999
Q ss_pred HHHHHHHHhh-----------cHHHHHHHHHHHHhcCCCcH
Q 013948 217 NRAAAYTQIH-----------QYAEAVRDCLKSIDIDPNYS 246 (433)
Q Consensus 217 ~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~ 246 (433)
++|.+|..+| ++++|+.+|++|++++|++.
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 9999999885 89999999999999999974
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-14 Score=114.84 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=88.8
Q ss_pred HccCHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 013948 190 QSQQYSDAIELYSFAIAL---CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAI 266 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 266 (433)
..|++++|+..|++++++ +|+++.+++++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 68899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHH
Q 013948 267 EKGFKKALQLDPNNEAVKENIRM 289 (433)
Q Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~ 289 (433)
. +|++++...|+++.+......
T Consensus 82 ~-~~~~al~~~p~~~~~~~~~~a 103 (117)
T 3k9i_A 82 E-LLLKIIAETSDDETIQSYKQA 103 (117)
T ss_dssp H-HHHHHHHHHCCCHHHHHTHHH
T ss_pred H-HHHHHHHhCCCcHHHHHHHHH
Confidence 9 999999999999887654433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.8e-14 Score=113.66 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013948 210 NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRM 289 (433)
Q Consensus 210 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~ 289 (433)
+.+.++.++|.++++.|+|++|+.+|+++++++|+++.+|.++|.+|..+|+|++|+. +++++++++|++...+.
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~~---- 80 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ-FCEKAVEVGRETRADYK---- 80 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTCCHH----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHH-HHHHHHHhCcccchhhH----
Confidence 3467788999999999999999999999999999999999999999999999999999 99999998875433222
Q ss_pred HHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHH
Q 013948 290 AEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGED 369 (433)
Q Consensus 290 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~ 369 (433)
..+.++.++| .++..+|++++|+.+
T Consensus 81 ------------------------------------------------------~~a~~~~~lg-~~~~~~~~~~~A~~~ 105 (127)
T 4gcn_A 81 ------------------------------------------------------LIAKAMSRAG-NAFQKQNDLSLAVQW 105 (127)
T ss_dssp ------------------------------------------------------HHHHHHHHHH-HHHHHTTCHHHHHHH
T ss_pred ------------------------------------------------------HHHHHHHHHH-HHHHHcCCHHHHHHH
Confidence 3344566777 777777888888888
Q ss_pred HhhhcCCCCC
Q 013948 370 SNVSGSDEPG 379 (433)
Q Consensus 370 ~~~al~l~P~ 379 (433)
|+++++..|+
T Consensus 106 ~~kal~~~~~ 115 (127)
T 4gcn_A 106 FHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHhhCcC
Confidence 8888777665
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.6e-14 Score=123.35 Aligned_cols=145 Identities=16% Similarity=0.100 Sum_probs=127.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ----QYSDAIELYSFAIALCGNNAVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 222 (433)
.+++++|+.+|+++++. .+ +.+++.+|.++.. + ++++|+.+|+++++ +.++.+++++|.+|
T Consensus 31 ~~~~~~A~~~~~~a~~~--g~----------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y 95 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAAQ--GD----------GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVL 95 (212)
T ss_dssp HTCHHHHHHHHHHHHHT--TC----------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc--CC----------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHH
Confidence 37899999999999875 23 7899999999988 6 89999999999964 67999999999999
Q ss_pred HH----hhcHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013948 223 TQ----IHQYAEAVRDCLKSIDIDP--NYSKAYSRLGLAYYA----QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQ 292 (433)
Q Consensus 223 ~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (433)
.. .+++++|+.+|+++++..| .++.+++.||.+|.. .+++++|+. +|++++++ |.++.++.+||.+|.
T Consensus 96 ~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~-~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 96 VNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE-YFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp TCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH-HHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred HcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHHc-CCCHHHHHHHHHHHH
Confidence 88 8899999999999999988 469999999999999 889999999 99999998 778889999999987
Q ss_pred HH-H-----HHHHhcccccccC
Q 013948 293 KL-R-----EERQRTGWDQTTS 308 (433)
Q Consensus 293 ~~-~-----~~~~a~~~~~~~~ 308 (433)
.. | +.++|..+++.+.
T Consensus 174 ~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 174 QGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HCBTTTBCCCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHH
Confidence 64 3 6888888877543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.6e-13 Score=107.61 Aligned_cols=106 Identities=19% Similarity=0.198 Sum_probs=102.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..+++++...|.+ ..++..+|.++...|++++|+..+.+++..+|++..+++.+|.++...|
T Consensus 25 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 25 VENFEAAVHFYGKAIELNPAN----------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLN 94 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHcCCCC----------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhC
Confidence 589999999999999998877 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNY 262 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 262 (433)
++++|+..++++++++|+++.++..+|.++...|++
T Consensus 95 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 95 KHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998875
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.2e-14 Score=139.75 Aligned_cols=133 Identities=17% Similarity=0.232 Sum_probs=118.4
Q ss_pred hhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHH
Q 013948 137 FRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYS 216 (433)
Q Consensus 137 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 216 (433)
+...+......|++++|+..|+++++.+|.+ +.++..+|.++...|++++|+..|+++++++|+++.+++
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 78 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSN----------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3444555556899999999999999999987 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH--HHHcCCHHHHHHHHHH-----------HHHhhCCCC
Q 013948 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA--YYAQGNYNDAIEKGFK-----------KALQLDPNN 280 (433)
Q Consensus 217 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~A~~~~~~-----------~al~~~p~~ 280 (433)
++|.+|..+|++++|+..|+++++++|++..++..++.+ +...|++++|+. .++ +++.++|+.
T Consensus 79 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 79 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA-GDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhc-cccccchhHhhhhhhhccccccc
Confidence 999999999999999999999999999999999999999 889999999999 999 888877764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.7e-14 Score=135.44 Aligned_cols=129 Identities=23% Similarity=0.364 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA-----------------VYYSNRAAAYTQIHQYAEAVRDCLKSI 239 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~al 239 (433)
.+..++.+|..++..|+|++|+..|++++.+.|++. .+|+++|.|+..+|+|++|+.+|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 378899999999999999999999999999999877 499999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-HHHHHhcccccc
Q 013948 240 DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL-REERQRTGWDQT 306 (433)
Q Consensus 240 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~a~~~~~~ 306 (433)
+++|+++.+|+++|.++..+|++++|+. +|+++++++|++..++..++.+.... +..+++...+.+
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~-~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~ 324 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARD-DFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKG 324 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHTTC--------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 99999999999999999999885544 444444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.8e-14 Score=120.10 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=108.7
Q ss_pred HHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHcCCH--HH
Q 013948 188 VMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA-YYAQGNY--ND 264 (433)
Q Consensus 188 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~--~~ 264 (433)
+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|+++++++|+++.+++.+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 265 AIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 265 A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
|+. +|+++++++|+++.++..+|.++...|++++|...+..
T Consensus 100 A~~-~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 100 TRA-MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK 140 (177)
T ss_dssp HHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHH-HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 999 99999999999999999999999999999999888764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.3e-13 Score=124.55 Aligned_cols=156 Identities=10% Similarity=0.032 Sum_probs=130.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|++.+++++...+... ........++.+|.++...|++++|+..|++++...+.. ..+++++|.
T Consensus 88 ~~~y~~A~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 2qfc_A 88 QKRYKEIYNKVWNELKKEEYHP----EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp TTCHHHHHHHHHHHHHTCCCCH----HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccCCh----hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 5899999999999998765431 112335567779999999999999999999999876544 668999999
Q ss_pred HHHHhhcHHHHHHHHHHHH---hcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC------CHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSI---DIDPNYS----KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN------NEAVKENI 287 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~------~~~~~~~l 287 (433)
+|...|++++|+.+|++++ +..|++. .+++++|.+|..+|+|++|+. ++++++++.+. ...++.++
T Consensus 164 ~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~-~~~kal~~~~~~~~~~~~~~~~~~l 242 (293)
T 2qfc_A 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY-QVNKAIEISCRINSMALIGQLYYQR 242 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTBCSSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH-HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999999999999999999 4566643 689999999999999999999 99999987643 27789999
Q ss_pred HHHHHHHHHHHHh-ccccccc
Q 013948 288 RMAEQKLREERQR-TGWDQTT 307 (433)
Q Consensus 288 ~~~~~~~~~~~~a-~~~~~~~ 307 (433)
|.++..+|++++| ..++.++
T Consensus 243 g~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 243 GECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHH
Confidence 9999999999998 6655543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.2e-13 Score=112.73 Aligned_cols=102 Identities=17% Similarity=0.111 Sum_probs=96.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++.++|.+ ..+++.+|.+++..|++++|+..|++++.++|+++.+|+++|.++..+|
T Consensus 24 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 93 (164)
T 3sz7_A 24 RKEYSKAIDLYTQALSIAPAN----------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMA 93 (164)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCcC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 599999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
++++|+.+|+++++++|++..+|+.++.....
T Consensus 94 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 94 DYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp CHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 99999999999999999999988877766543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.3e-13 Score=115.61 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=105.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccc------cchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHA------YNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~------~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 220 (433)
.|++++|+..|++++...|.+.... ........++..+|.++...|++++|+..|++++.++|++..+++.+|.
T Consensus 51 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 130 (198)
T 2fbn_A 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGV 130 (198)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 6999999999999999988762100 0001123789999999999999999999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al 274 (433)
++..+|++++|+..|+++++++|++..++..++.++...++..++....+.+.+
T Consensus 131 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 131 ANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998888741444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-13 Score=125.64 Aligned_cols=149 Identities=12% Similarity=0.073 Sum_probs=126.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|++++.++|++..+++++|.++..+|
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 17 GRKYPEAAACYGRAITRNPLV----------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp TTCHHHHHHHHHHHHHHCSCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCcc----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 599999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcH-----HHHH--------------------------HHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 227 QYAEAVRDCLKSIDIDPNYS-----KAYS--------------------------RLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~-----~~~~--------------------------~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
++++|+..|+++++++|+++ .++. .++.. ..|++++|+. .++++++
T Consensus 87 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~-~~~~al~ 163 (281)
T 2c2l_A 87 SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELE-ECQRNHE 163 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHT-TTSGGGT
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHH-HHHhhhc
Confidence 99999999999999988652 1111 12222 3578889999 8999999
Q ss_pred hCCCCHHHHHHHHHHHHHH-HHHHHhcccccccC
Q 013948 276 LDPNNEAVKENIRMAEQKL-REERQRTGWDQTTS 308 (433)
Q Consensus 276 ~~p~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~ 308 (433)
++|++......++.++... +.++++...+..+.
T Consensus 164 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 164 GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9998888888887777665 55677776665443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=110.03 Aligned_cols=102 Identities=16% Similarity=0.102 Sum_probs=89.4
Q ss_pred cchHHHHHHHHHHHHHH---HhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINE---MEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 223 (433)
.|++++|+..|+++++. +|.+ ..+++.+|.++...|++++|+..|+++++++|+++.+++++|.++.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDL----------AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY 72 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 58999999999999998 5665 8999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
.+|++++|+..+++++...|+++........+...
T Consensus 73 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999998776544444333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.1e-13 Score=111.41 Aligned_cols=119 Identities=12% Similarity=0.055 Sum_probs=100.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccc--------cccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGA--------HAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~--------~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 218 (433)
.|+|++|+..|++++...+.... .....+....++..+|.+++..|+|++|+..+++++.++|+++.+|+.+
T Consensus 24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~ 103 (162)
T 3rkv_A 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRR 103 (162)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 59999999999999999433210 0000344588999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCCHHHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDIDPNYS-KAYSRLGLAYYAQGNYNDA 265 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A 265 (433)
|.++..+|++++|+..|+++++++|+++ .+...++.+....+++.+.
T Consensus 104 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 104 AKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 7788888887766555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=105.96 Aligned_cols=105 Identities=20% Similarity=0.235 Sum_probs=101.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|++++..+|++..+++.+|.++...|
T Consensus 29 ~~~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 98 (133)
T 2lni_A 29 KGDYPQAMKHYTEAIKRNPKD----------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMK 98 (133)
T ss_dssp TTCSHHHHHHHHHHHTTCTTC----------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHcCCCc----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHh
Confidence 589999999999999998877 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN 261 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 261 (433)
++++|+.+|+++++++|.+..++..++.++..+|+
T Consensus 99 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 99 DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998774
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.1e-14 Score=137.03 Aligned_cols=196 Identities=12% Similarity=0.060 Sum_probs=106.0
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
..|++++|+.+++.+.+..+. +.+...++.+|.+.|++.++.++++. | +...|.++|..+...
T Consensus 73 ~~g~~EeAi~yl~~ark~~~~-----------~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~ 135 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKKARE-----------SYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDE 135 (449)
T ss_dssp -----------------------------------------------CHHHHTTTTTC-----C----------------
T ss_pred hCCCHHHHHHHHHHHHHhCcc-----------chhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHc
Confidence 368999999999988885332 45677788999999999999888853 4 446999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
|+|++|..+|.++ ..|..+|.++.++|+|++|++ +++++ +++.+|.....++...|+++.|..+..
T Consensus 136 g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVe-a~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 136 KMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD-GARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp -CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHH-HHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred CCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHH-HHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999987 478899999999999999999 99998 578999999999999999999977766
Q ss_pred ccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-cccc
Q 013948 306 TTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGG 384 (433)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~ 384 (433)
. |..+| +... .+. .+|...|++++|+..+++++.++|.. ....
T Consensus 202 ~---------------------------L~~~a-----d~l~---~lv-~~Yek~G~~eEai~lLe~aL~le~ah~~~ft 245 (449)
T 1b89_A 202 H---------------------------IVVHA-----DELE---ELI-NYYQDRGYFEELITMLEAALGLERAHMGMFT 245 (449)
T ss_dssp T---------------------------TTTCH-----HHHH---HHH-HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHH
T ss_pred H---------------------------HHhCH-----hhHH---HHH-HHHHHCCCHHHHHHHHHHHhCCcHHHHHHHH
Confidence 3 33455 4432 355 66777777777777777777777655 2222
Q ss_pred ccccccccCCcHHHHHHHHHHHhh
Q 013948 385 NINLNFGENMPEDITGALRSMMEM 408 (433)
Q Consensus 385 ~~~~~l~~~~~~~~~~a~~~~~~~ 408 (433)
.+.....+..++.+.+.++.+..+
T Consensus 246 el~il~~ky~p~k~~ehl~~~~~~ 269 (449)
T 1b89_A 246 ELAILYSKFKPQKMREHLELFWSR 269 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 222111256666666666555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=128.34 Aligned_cols=172 Identities=10% Similarity=-0.015 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc------
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAV------YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY------ 245 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------ 245 (433)
...+...+..++..|+|++|+..+++++...+..+. .+..+|.++...+++++|+.+|++++.+.+..
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 344555678889999999999999999998777654 34468999999999999999999999975442
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhh
Q 013948 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKALQL-------DPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQ 318 (433)
Q Consensus 246 ~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 318 (433)
..++..+|.+|..+|++++|+. +|+++++. .+....++.++|.++..+|++++|..++..+.....
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~------ 227 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGID-LFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC------ 227 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH------
Confidence 3479999999999999999999 99999953 122345889999999999999999998774432110
Q ss_pred hhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCC-hhhHHHHHhhhcCC
Q 013948 319 STGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPS-QSRQGEDSNVSGSD 376 (433)
Q Consensus 319 ~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~-~~~A~~~~~~al~l 376 (433)
.....+ ..+.+++++| .++..+|+ +++|+.+|++|+.+
T Consensus 228 --------------~~~~~~-----~~~~~~~~lg-~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 228 --------------RINSMA-----LIGQLYYQRG-ECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp --------------HTTBCT-----THHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHH
T ss_pred --------------HcCcHH-----HHHHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHH
Confidence 122334 6689999999 99999995 69999999999875
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-14 Score=145.14 Aligned_cols=147 Identities=17% Similarity=0.161 Sum_probs=133.1
Q ss_pred HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---------------HHHHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---------------SKAYSRLGL 254 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~ 254 (433)
..+++++|+..|..++..+|+.+..+.++|.+++..|+|++|+..|+++++++|.+ ..+|+++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999998 799999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccc
Q 013948 255 AYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTM 334 (433)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al 334 (433)
|+..+|+|++|+. +|+++++++|++..+++++|.++..+|++++|...+.+ ++
T Consensus 326 ~~~~~g~~~~A~~-~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~--------------------------al 378 (457)
T 1kt0_A 326 CYLKLREYTKAVE-CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEK--------------------------VL 378 (457)
T ss_dssp HHHHTTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------HH
T ss_pred HHHHhcCHHHHHH-HHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHH--------------------------HH
Confidence 9999999999999 99999999999999999999999999999998887663 67
Q ss_pred cCCCCCCCccHHHHHHHHhhcccccCCChhhHHHH
Q 013948 335 PFNTNALPTDIASMLMNMASNMPQAQPSQSRQGED 369 (433)
Q Consensus 335 ~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~ 369 (433)
.++| ++..++..++ .++..+|++++|...
T Consensus 379 ~l~P-----~~~~a~~~l~-~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 379 EVNP-----QNKAARLQIS-MCQKKAKEHNERDRR 407 (457)
T ss_dssp TTC---------CHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HhCC-----CCHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 7899 9999999999 999999999988754
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=9.9e-13 Score=105.77 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=82.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|+++++.+|.+ +.+|+.+|.++...|++++|+..|+++++++|+++.+++++|.++...|
T Consensus 30 ~g~~~~A~~~~~~al~~~P~~----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 30 LANLAEAALAFEAVCQKEPER----------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 589999999999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSK 247 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~ 247 (433)
++++|+..|+++++++|++..
T Consensus 100 ~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999998754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-13 Score=125.34 Aligned_cols=157 Identities=10% Similarity=0.024 Sum_probs=128.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|+..+++++...+... ........+..+|.++...+++++|+..|++++.+.+.. ..++.++|.
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHP----EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCH----HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccccCCh----HHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 5899999999999998654431 011123445568999999999999999999999965432 447999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhc-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC------HHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDI-------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN------EAVKENI 287 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~------~~~~~~l 287 (433)
+|..+|++++|+.+|+++++. .+....+++++|.+|..+|+|++|+. ++++++++.+.. ..++.++
T Consensus 164 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~-~~~~al~~~~~~~~~~~~~~~~~~l 242 (293)
T 3u3w_A 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY-QVNKAIEISCRINSMALIGQLYYQR 242 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTBCTTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 999999999999999999953 23345689999999999999999999 999999886543 7899999
Q ss_pred HHHHHHHHH-HHHhcccccccC
Q 013948 288 RMAEQKLRE-ERQRTGWDQTTS 308 (433)
Q Consensus 288 ~~~~~~~~~-~~~a~~~~~~~~ 308 (433)
|.++..+|+ +++|..+++++.
T Consensus 243 g~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 243 GECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHH
Confidence 999999995 689988877544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-13 Score=130.99 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=81.6
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccc-------hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYN-------QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR 218 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~-------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 218 (433)
..|++++|+..|++++...|.+...... ......+++.+|.++...|+|++|+..|++++.++|++..+|+++
T Consensus 191 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 270 (338)
T 2if4_A 191 KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRR 270 (338)
T ss_dssp SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4799999999999999998875200000 000114899999999999999999999999999999999999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY-YAQGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
|.+|..+|++++|+.+|+++++++|++..++..++.+. ...+..+++.. .|.+++...|.++.
T Consensus 271 g~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~-~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 271 GKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE-MYKGIFKGKDEGGA 334 (338)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCCCCCCC
Confidence 99999999999999999999999999999999999994 55677888888 99999999998764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-11 Score=98.31 Aligned_cols=104 Identities=32% Similarity=0.427 Sum_probs=99.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..+++++...|.+ ..+++.+|.++...|++++|+..|++++..+|.+..+++.+|.++...|
T Consensus 22 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 91 (125)
T 1na0_A 22 QGDYDEAIEYYQKALELDPNN----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG 91 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHCcCc----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 589999999999999998876 7899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG 260 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 260 (433)
++++|+..+++++..+|+++.++..+|.++...|
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 92 DYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999988765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-11 Score=97.36 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=96.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..+++++...|.+ ..++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|
T Consensus 17 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 17 VGNIDDALQCYSEAIKLDPHN----------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHCCCc----------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 589999999999999999887 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
++++|+..++++++.+|+++.++..++.+..
T Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 87 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 9999999999999999999999999988753
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-13 Score=118.13 Aligned_cols=151 Identities=9% Similarity=0.013 Sum_probs=123.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------cCCCHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL------CGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~ 220 (433)
.|++++|+..++.... +| .....++..+|.++...|++++|+..|++++.+ .+....++.++|.
T Consensus 5 ~g~~~~A~~~~~~~~~-~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HP---------ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGM 74 (203)
T ss_dssp --CHHHHHHHHHHHHT-ST---------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcC-Ch---------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5899999995554433 22 234889999999999999999999999999994 4445788999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhc---CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC--CC----HHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDI---DPN----YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP--NN----EAVKENI 287 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~---~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p--~~----~~~~~~l 287 (433)
++...|++++|+..+++++.+ .++ ...++..+|.++...|++++|+. ++++++.+.+ .+ ..++..+
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQ-EYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHHhccchHHHHHHHHHH
Confidence 999999999999999999998 442 35779999999999999999999 9999997642 22 2346889
Q ss_pred HHHHHHHHHHHHhcccccccC
Q 013948 288 RMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~~~ 308 (433)
|.++...|++++|..++..+.
T Consensus 154 a~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999988876443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.8e-13 Score=118.29 Aligned_cols=161 Identities=11% Similarity=0.072 Sum_probs=127.3
Q ss_pred HHHccCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHcC
Q 013948 188 VMQSQQYSDAIELYSFAIALCG-NNAVYYSNRAAAYTQIHQYAEAVRDCLKSID------IDPNYSKAYSRLGLAYYAQG 260 (433)
Q Consensus 188 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g 260 (433)
++..|++++|.+.++.... +| ....++..+|.++...|++++|+..+++++. ..|....++..+|.++...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3568999999996555444 45 5689999999999999999999999999999 44556789999999999999
Q ss_pred CHHHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCccc
Q 013948 261 NYNDAIEKGFKKALQL---DPNN----EAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFT 333 (433)
Q Consensus 261 ~~~~A~~~~~~~al~~---~p~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~a 333 (433)
++++|+. ++++++.+ .+++ ..++.++|.++..+|++++|..++..+..... .
T Consensus 81 ~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--------------------~ 139 (203)
T 3gw4_A 81 NWDAARR-CFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ--------------------Q 139 (203)
T ss_dssp CHHHHHH-HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--------------------H
T ss_pred CHHHHHH-HHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--------------------h
Confidence 9999999 99999988 4433 45788999999999999999988774331100 0
Q ss_pred ccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 334 MPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 334 l~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
.. ++ .....++..+| .++..+|++++|+..+++++++
T Consensus 140 ~~-~~----~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 140 AD-DQ----VAIACAFRGLG-DLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp TT-CH----HHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHH
T ss_pred cc-ch----HHHHHHHHHHH-HHHHHCcCHHHHHHHHHHHHHH
Confidence 11 11 24566789999 9999999999999999999775
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4.5e-12 Score=136.20 Aligned_cols=224 Identities=12% Similarity=0.018 Sum_probs=177.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+|++|++++..+....+.. .+...+|.+|.+.+++++ ++.|. ..+ +...+..+|..+...|
T Consensus 1147 lGkyEEAIeyL~mArk~~~e~-----------~Idt~LafaYAKl~rlee-le~fI----~~~-n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1147 SGNWEELVKYLQMARKKARES-----------YVETELIFALAKTNRLAE-LEEFI----NGP-NNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred cCCHHHHHHHHHHHHhhcccc-----------cccHHHHHHHHhhcCHHH-HHHHH----hCC-CHHHHHHHHHHHHhcC
Confidence 799999999999999986542 223348999999999885 55542 233 4566778999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
+|++|+.+|.++ ..|..+|.++.++|++++|++ +++++ .++.+|...+.++...|++..|..+...
T Consensus 1210 ~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIE-aarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~ 1275 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD-GARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH 1275 (1630)
T ss_pred CHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHH-HHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 999999999997 489999999999999999999 99998 6679999999999999999999998876
Q ss_pred cCCCccch--hhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccc--cCCChhhHHHHHhhhcCCCC--
Q 013948 307 TSSSHYSQ--ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQ--AQPSQSRQGEDSNVSGSDEP-- 378 (433)
Q Consensus 307 ~~~~~~~~--~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~--~~g~~~~A~~~~~~al~l~P-- 378 (433)
....+... ...+|...|.|++|+..+ ++.++| .+...|..+| .++. ..++.-++++.|...+.+.|
T Consensus 1276 Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler-----aH~gmftELa-iLyaKy~peklmEhlk~f~~rini~k~~ 1349 (1630)
T 1xi4_A 1276 IVVHADELEELINYYQDRGYFEELITMLEAALGLER-----AHMGMFTELA-ILYSKFKPQKMREHLELFWSRVNIPKVL 1349 (1630)
T ss_pred hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh-----hHhHHHHHHH-HHHHhCCHHHHHHHHHHHHHhcccchHh
Confidence 44444333 367899999999999999 999999 9999997777 6554 45778899999999988877
Q ss_pred ---Cc-ccccccccccccCCcHHHHHHHHHHHhhc
Q 013948 379 ---GI-RIGGNINLNFGENMPEDITGALRSMMEMF 409 (433)
Q Consensus 379 ---~~-~~~~~~~~~l~~~~~~~~~~a~~~~~~~~ 409 (433)
+. ..+..+.+- ....++..+|+..|++..
T Consensus 1350 r~~e~~~lW~elv~L--Y~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A 1350 RAAEQAHLWAELVFL--YDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred HHHHHHHHHHHHHHH--HHhcccHHHHHHHHHhcc
Confidence 33 222222222 244556667777777664
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.5e-12 Score=102.39 Aligned_cols=105 Identities=16% Similarity=0.104 Sum_probs=97.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|++++.++|+++.+++++|.++..+|
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 91 (137)
T 3q49_B 22 GRKYPEAAACYGRAITRNPLV----------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME 91 (137)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHHHHHHhhCcCc----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence 599999999999999999987 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCC
Q 013948 227 QYAEAVRDCLKSIDIDPN-----YSKAYSRLGLAYYAQGN 261 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~ 261 (433)
++++|+..|+++++++|+ +..++..+..+......
T Consensus 92 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 92 SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 67777777777655443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-11 Score=98.43 Aligned_cols=102 Identities=21% Similarity=0.320 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 196 DAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 196 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
+|+..|++++..+|+++.+++++|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+. +|+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ-AWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence 588999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hCCC--CHHHHHHHHHHHHHHHHHH
Q 013948 276 LDPN--NEAVKENIRMAEQKLREER 298 (433)
Q Consensus 276 ~~p~--~~~~~~~l~~~~~~~~~~~ 298 (433)
+.|. +......+...+..+++..
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~ 106 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLARED 106 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcccc
Confidence 9884 5666777777777666644
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-11 Score=97.55 Aligned_cols=108 Identities=10% Similarity=-0.010 Sum_probs=96.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 223 (433)
.|++++|+..|++++..+|.+ +....+++.+|.+++..|++++|+..|++++..+|++ +.+++.+|.++.
T Consensus 15 ~~~~~~A~~~~~~~~~~~p~~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELYPNG-------VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp TTCHHHHHHHHHHHHHHCSSS-------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCC-------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 589999999999999998876 2234799999999999999999999999999999999 899999999999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN 261 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 261 (433)
.+|++++|+..|+++++..|+++.+...+..+....++
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 99999999999999999999999887776666554443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3e-12 Score=123.71 Aligned_cols=121 Identities=16% Similarity=0.131 Sum_probs=108.1
Q ss_pred cchHHHHHHHHHHHHHHHhhcc------ccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSG------AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 220 (433)
.|++++|+..|++++...+... ......+....++..+|.+++..|++++|+.+|+++++++|+++.+++++|.
T Consensus 236 ~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 315 (370)
T 1ihg_A 236 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQ 315 (370)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 6999999999999999654420 0000234458899999999999999999999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 267 (433)
+|..+|++++|+..|+++++++|++..++..++.++..+++++++..
T Consensus 316 ~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 316 GWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-12 Score=102.62 Aligned_cols=90 Identities=30% Similarity=0.375 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc------HHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY------SKAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~ 251 (433)
+.+++.+|.+++..|++++|+..|++++.++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666666666666655 555555
Q ss_pred HHHHHHHcCCHHHHHH
Q 013948 252 LGLAYYAQGNYNDAIE 267 (433)
Q Consensus 252 lg~~~~~~g~~~~A~~ 267 (433)
+|.++..+|+++.|+.
T Consensus 84 ~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHhHhhhHh
Confidence 5555555555555544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.4e-11 Score=100.15 Aligned_cols=128 Identities=21% Similarity=0.246 Sum_probs=104.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|+.++++++...+... .......++..+|.++...|++++|+..|++++.+.+.. ..+++++|.
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 97 (164)
T 3ro3_A 22 LGNFRDAVIAHEQRLLIAKEFG----DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN 97 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhC----CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5889999999999999877642 223346788889999999999999999999998876543 568889999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPN------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~ 279 (433)
++...|++++|+.++++++.+.+. ...++..+|.++...|++++|+. ++++++++...
T Consensus 98 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a~~~~~~ 161 (164)
T 3ro3_A 98 TYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH-FAEKHLEISRE 161 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHH-HHHHHHHHHHH
Confidence 999999999999999999877422 35678889999999999999999 99998877543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=9.8e-12 Score=102.40 Aligned_cols=120 Identities=12% Similarity=0.050 Sum_probs=107.7
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 206 ALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 206 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
..+|.+...++.+|.++...|++++|+..|+++++++|++ ..+++.+|.++...|++++|+. +++++++++|+++.
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAET-EASKAIEKDGGDVK 100 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHTSCCHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHH-HHHHHHhhCccCHH
Confidence 3467889999999999999999999999999999999998 8999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccc
Q 013948 283 VKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQ 358 (433)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~ 358 (433)
++..+|.++..+|++++|..++.. ++..+| ++..++..++ .+..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~--------------------------al~~~p-----~~~~~~~~l~-~~~~ 144 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQR--------------------------CVSLEP-----KNKVFQEALR-NISG 144 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH--------------------------HHHHCS-----SCHHHHHHHH-HHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH--------------------------HHHcCC-----CcHHHHHHHH-HHHh
Confidence 999999999999999999887663 456677 7777777777 5543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.9e-12 Score=104.43 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY--- 245 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--- 245 (433)
...+.++..+|.++...|++++|+..|.+++.+.+.. ..++..+|.++...|++++|+.++++++.+.+..
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 4457899999999999999999999999999886542 2589999999999999999999999999986543
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 246 ---SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN------NEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 246 ---~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
..++..+|.++...|++++|+. ++++++++.+. ...++..++.++...|++++|..++..+
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAID-YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6789999999999999999999 99999987432 2567889999999999999998887643
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-11 Score=90.80 Aligned_cols=84 Identities=36% Similarity=0.462 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
.+.+++.+|.++...|++++|+..|++++..+|++..+++++|.++...|++++|+..++++++++|+++.++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcC
Q 013948 257 YAQG 260 (433)
Q Consensus 257 ~~~g 260 (433)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-11 Score=97.19 Aligned_cols=95 Identities=16% Similarity=0.173 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC------HHHH
Q 013948 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN------EAVK 284 (433)
Q Consensus 211 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~------~~~~ 284 (433)
++..++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+. +++++++++|++ ..++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ-MCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHhCCCccHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999 999999999999 8899
Q ss_pred HHHHHHHHHHHHHHHhcccccc
Q 013948 285 ENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 285 ~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
..++.++..+|+.+.+...+..
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 9999999999877766665553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-12 Score=100.84 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=95.8
Q ss_pred hcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC--CHHHH
Q 013948 207 LCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN--NEAVK 284 (433)
Q Consensus 207 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~--~~~~~ 284 (433)
++|+++.+++.+|.++...|++++|+..|+++++++|.+..+++.+|.++...|++++|+. +++++++++|. +..++
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~ 79 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD-CYNYVINVIEDEYNKDVW 79 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTSCCTTCHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhCcccchHHHH
Confidence 3688899999999999999999999999999999999999999999999999999999999 99999999999 99999
Q ss_pred HHHHHHHHHH-HHHHHhcccccccC
Q 013948 285 ENIRMAEQKL-REERQRTGWDQTTS 308 (433)
Q Consensus 285 ~~l~~~~~~~-~~~~~a~~~~~~~~ 308 (433)
..++.++..+ |++++|..++..+.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999 99999988877544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-11 Score=95.90 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=95.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-------HHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-------AVYYSNRA 219 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la 219 (433)
.|++++|+.+|++++...|.+ ..+++.+|.++...|++++|+.+|.+++...|++ ..+++.+|
T Consensus 17 ~~~~~~A~~~~~~a~~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 17 KKDFDTALKHYDKAKELDPTN----------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCcc----------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 589999999999999998887 8899999999999999999999999999999887 89999999
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG 260 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 260 (433)
.++...|++++|+.+|+++++..| ++..+..++.+....+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 6888888888876554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.7e-11 Score=90.31 Aligned_cols=85 Identities=44% Similarity=0.681 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013948 210 NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRM 289 (433)
Q Consensus 210 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~ 289 (433)
.++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+. +|+++++++|+++.++..++.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE-YYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcCCCCHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHH
Q 013948 290 AEQKLR 295 (433)
Q Consensus 290 ~~~~~~ 295 (433)
++..+|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 987653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-12 Score=126.85 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=77.6
Q ss_pred hhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH
Q 013948 136 YFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYY 215 (433)
Q Consensus 136 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 215 (433)
.|...++.+.+.|.|++|+.+|.++ ..|..+|.++...|+|++|++.|.++ +++..|
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a------------------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~W 180 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV------------------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTW 180 (449)
T ss_dssp -------------CTTTHHHHHHHT------------------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh------------------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhH
Confidence 3444455555566666666666643 23666666666666666666666666 356666
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--
Q 013948 216 SNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK-- 293 (433)
Q Consensus 216 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~-- 293 (433)
.....++...|+++.|..+..+ +...|+. ...+..+|.+.|++++|+. .+++++.+++....++..++.++.+
T Consensus 181 k~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~-lLe~aL~le~ah~~~ftel~il~~ky~ 255 (449)
T 1b89_A 181 KEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELIT-MLEAALGLERAHMGMFTELAILYSKFK 255 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHH-HHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHH-HHHHHhCCcHHHHHHHHHHHHHHHhcC
Confidence 6666666666666666555554 2233333 3346666667777777777 7777777777677777666666553
Q ss_pred HHHHHHhccc
Q 013948 294 LREERQRTGW 303 (433)
Q Consensus 294 ~~~~~~a~~~ 303 (433)
.++..+..+.
T Consensus 256 p~k~~ehl~~ 265 (449)
T 1b89_A 256 PQKMREHLEL 265 (449)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.7e-11 Score=115.14 Aligned_cols=208 Identities=10% Similarity=0.002 Sum_probs=154.0
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
..+++++|++.|.++++.+|+..+.....+.+.......+.+.
T Consensus 16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al------------------------------------- 58 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSI------------------------------------- 58 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHH-------------------------------------
T ss_pred HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHH-------------------------------------
Confidence 3567999999999999999999865554433333322222221
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC
Q 013948 114 DSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ 193 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 193 (433)
..+...+.. .|++++|++++++++...+... .......+...+|.++...|+
T Consensus 59 -----------~~l~~~y~~-------------~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~ 110 (434)
T 4b4t_Q 59 -----------LELGQLYVT-------------MGAKDKLREFIPHSTEYMMQFA----KSKTVKVLKTLIEKFEQVPDS 110 (434)
T ss_dssp -----------HHHHHHHHH-------------HTCHHHHHHHHHHTHHHHHTSC----HHHHHHHHHHHHHHHCSCCSC
T ss_pred -----------HHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhCCCC
Confidence 122222222 6999999999999999877642 112234566778888889999
Q ss_pred HHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCC
Q 013948 194 YSDAIELYSFAIALCGN------NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGN 261 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~ 261 (433)
+++|+.++++++...+. ...++.++|.++...|+|.+|+..+++++.. .+....++..+|.+|...|+
T Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (434)
T 4b4t_Q 111 LDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN 190 (434)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc
Confidence 99999999999876432 3678999999999999999999999999876 34457899999999999999
Q ss_pred HHHHHHHHHHHHHhhCCC---C----HHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 262 YNDAIEKGFKKALQLDPN---N----EAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 262 ~~~A~~~~~~~al~~~p~---~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
|++|.. .+++++.+.+. . ...+..+|.++...+++.+|..++..+
T Consensus 191 ~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 191 LAKSKA-SLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHH-HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999 99999977432 2 234555666666667777776665433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-11 Score=112.07 Aligned_cols=188 Identities=9% Similarity=-0.068 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhhcHHH
Q 013948 153 ASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG--NNAVYYSNRAAAYTQIHQYAE 230 (433)
Q Consensus 153 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~ 230 (433)
|+..+++.+...+.. ..+++.+|.++...|++++|++.+.+++..+| ++..++..++.++..+|+.+.
T Consensus 85 a~~~l~~l~~~~~~~----------~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~ 154 (310)
T 3mv2_B 85 NIEELENLLKDKQNS----------PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVST 154 (310)
T ss_dssp CCHHHHHTTTTSCCC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcCCCC----------cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHH
Confidence 567777766543222 45567999999999999999999999999887 789999999999999999999
Q ss_pred HHHHHHHHHhcCCC------cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHh
Q 013948 231 AVRDCLKSIDIDPN------YSKAYSRLGLAYYAQG--NYNDAIEKGFKKALQLDPN--NEAVKENIRMAEQKLREERQR 300 (433)
Q Consensus 231 A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g--~~~~A~~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~a 300 (433)
|.+.+++..+.+|+ .....+.-|.+....| ++.+|.. .|+++.+..|+ .+..+.+ ++..+|++++|
T Consensus 155 A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~-~f~El~~~~p~~~~~~lLln---~~~~~g~~~eA 230 (310)
T 3mv2_B 155 ASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFY-YYEELSQTFPTWKTQLGLLN---LHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHH-HHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHH
T ss_pred HHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHH-HHHHHHHhCCCcccHHHHHH---HHHHcCCHHHH
Confidence 99999999999993 3334444455576667 9999999 99999888886 3334444 89999999999
Q ss_pred cccccccCCCccchhhhhhhcCCCCCCCCCcccc-cC---CCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 301 TGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTM-PF---NTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al-~~---~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
....+.+....+ .+ .. +| +++.++.+++ .+...+|+ +|.+.++++.++
T Consensus 231 e~~L~~l~~~~p--------------------~~~~k~~~~p-----~~~~~LaN~i-~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 231 QGIVELLLSDYY--------------------SVEQKENAVL-----YKPTFLANQI-TLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHSHHH--------------------HTTTCHHHHS-----SHHHHHHHHH-HHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHhcc--------------------cccccccCCC-----CCHHHHHHHH-HHHHHhCh--HHHHHHHHHHHh
Confidence 888763221100 00 01 48 8999999998 77778887 899999999999
Q ss_pred CCCccc
Q 013948 377 EPGIRI 382 (433)
Q Consensus 377 ~P~~~~ 382 (433)
+|+..+
T Consensus 283 ~P~hp~ 288 (310)
T 3mv2_B 283 DHEHAF 288 (310)
T ss_dssp TCCCHH
T ss_pred CCCChH
Confidence 999633
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.2e-11 Score=116.75 Aligned_cols=204 Identities=11% Similarity=0.032 Sum_probs=161.4
Q ss_pred cchHHHHHHHHHHHHHHHhhcccccc-------chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAY-------NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AV 213 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~-------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~ 213 (433)
.|++++|++.|.+++...|....... .......++..+|.+|...|++++|++.|.+++...+.. ..
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 48999999999999998877643211 123445678999999999999999999999999886654 24
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh------CCCCH
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDID------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL------DPNNE 281 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~------~p~~~ 281 (433)
+...+|.++...|++++|+..+++++... +....++..+|.++...|+|++|+. .+++++.. .+...
T Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~l~~~~~~~~~~~~~~~~~ 175 (434)
T 4b4t_Q 97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA-LINDLLREFKKLDDKPSLV 175 (434)
T ss_dssp HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHTTSSCSTHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH-HHHHHHHHHHhcccchhHH
Confidence 56778888889999999999999998763 3347889999999999999999999 99998865 23346
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCC
Q 013948 282 AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQP 361 (433)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g 361 (433)
.++..++.++..+|++.+|...+.++..... .+...| ......+..+| .++...|
T Consensus 176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--------------------~~~~~~----~~~~~~~~~~g-~~~~~~~ 230 (434)
T 4b4t_Q 176 DVHLLESKVYHKLRNLAKSKASLTAARTAAN--------------------SIYCPT----QTVAELDLMSG-ILHCEDK 230 (434)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------------HSCCCH----HHHHHHHHHHH-HHTTSSS
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh--------------------cCCCch----HHHHHHHHHHH-HHHHHHH
Confidence 7899999999999999999988775432110 122222 13456777888 9999999
Q ss_pred ChhhHHHHHhhhcCC
Q 013948 362 SQSRQGEDSNVSGSD 376 (433)
Q Consensus 362 ~~~~A~~~~~~al~l 376 (433)
++++|..+|..+++.
T Consensus 231 ~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 231 DYKTAFSYFFESFES 245 (434)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999998764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.8e-11 Score=93.22 Aligned_cols=99 Identities=8% Similarity=0.023 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHH
Q 013948 152 KASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEA 231 (433)
Q Consensus 152 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 231 (433)
+|+..|++++..+|.+ ..+++.+|.++...|++++|+..|++++.++|++..+|+++|.++...|++++|
T Consensus 3 ~a~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 72 (115)
T 2kat_A 3 AITERLEAMLAQGTDN----------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA 72 (115)
T ss_dssp CHHHHHHHHHTTTCCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 5788999999998887 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC--cHHHHHHHHHHHHHcC
Q 013948 232 VRDCLKSIDIDPN--YSKAYSRLGLAYYAQG 260 (433)
Q Consensus 232 ~~~~~~al~~~p~--~~~~~~~lg~~~~~~g 260 (433)
+..|+++++++|. +......+...+..++
T Consensus 73 ~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 73 RQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence 9999999999875 3444445554444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-10 Score=89.83 Aligned_cols=88 Identities=16% Similarity=0.205 Sum_probs=71.4
Q ss_pred hcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC--CHHHH
Q 013948 207 LCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN--NEAVK 284 (433)
Q Consensus 207 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~--~~~~~ 284 (433)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+. .|++++++.|. +....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID-TYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHSCHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhhhcCCchhHH
Confidence 4788999999999999999999999999999999999999999999999999999999999 99999988764 45555
Q ss_pred HHHHHHHHHHH
Q 013948 285 ENIRMAEQKLR 295 (433)
Q Consensus 285 ~~l~~~~~~~~ 295 (433)
..+...+...+
T Consensus 81 ~~l~~~l~~~~ 91 (100)
T 3ma5_A 81 SELQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 55555554443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-11 Score=91.92 Aligned_cols=90 Identities=11% Similarity=0.149 Sum_probs=73.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFAIALCGNNAV-YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG 260 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 260 (433)
+.+|.+++..|++++|+..|++++..+|+++. +++++|.++..+|++++|+..|+++++++|+++.++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45678888888888888888888888888888 88888888888888888888888888888888877644 6
Q ss_pred CHHHHHHHHHHHHHhhCCCC
Q 013948 261 NYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 261 ~~~~A~~~~~~~al~~~p~~ 280 (433)
.+.+++. .|++++..+|++
T Consensus 76 ~~~~a~~-~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILN-FYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHH-HHCCTTHHHHCC
T ss_pred HHHHHHH-HHHHHhccCccc
Confidence 6677777 777777776654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=9.9e-10 Score=90.24 Aligned_cols=121 Identities=19% Similarity=0.113 Sum_probs=106.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ-- 224 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 224 (433)
.+++++|+.+|+++.+.... .+. +|.++...+.+++|+.+|+++.+. .++.+++++|.+|..
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~------------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM------------FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT------------THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHHHcCCCH------------hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCC
Confidence 46899999999999987532 233 999999999999999999999986 689999999999999
Q ss_pred --hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013948 225 --IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA----QGNYNDAIEKGFKKALQLDPNNEAVKENIR 288 (433)
Q Consensus 225 --~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~al~~~p~~~~~~~~l~ 288 (433)
.+++++|+.+|+++.+. .++.++++||.+|.. .+++++|+. +|+++.+. .++.+...|+
T Consensus 72 g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~-~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVK-TFEKACRL--GSEDACGILN 136 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH-HHHHHHHT--TCHHHHHHC-
T ss_pred CCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHH-HHHHHHHC--CCHHHHHHHh
Confidence 89999999999999987 789999999999999 999999999 99999987 4566665554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3e-09 Score=109.97 Aligned_cols=193 Identities=8% Similarity=-0.055 Sum_probs=159.3
Q ss_pred chHHHHH-HHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-----------CC-----
Q 013948 148 SQVDKAS-RIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-----------GN----- 210 (433)
Q Consensus 148 g~~~~A~-~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------p~----- 210 (433)
|+.++|. .+|++++...|.+ ...|..++......|+++.|...|++++..- |.
T Consensus 357 ~~~~~a~r~il~rAi~~~P~s----------~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~ 426 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCIPNS----------AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI 426 (679)
T ss_dssp SCCTTHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence 4556786 9999999998876 7788899999999999999999999999752 53
Q ss_pred ------CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhCCCCHH
Q 013948 211 ------NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-DPNYSKAYSRLGLAYYAQG-NYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 211 ------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~~al~~~p~~~~ 282 (433)
...+|...+.+....|..+.|...|.+|++. .+.....|...|.+-...+ +++.|.. .|+++++..|+++.
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~-ife~~Lk~~p~~~~ 505 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACK-VLELGLKYFATDGE 505 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHH-HHHHHHHHHTTCHH
T ss_pred hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHCCCchH
Confidence 3457999999999999999999999999998 5455678888888877765 4999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCC
Q 013948 283 VKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPS 362 (433)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~ 362 (433)
.|..++......|+.+.|...++.+. ...| .+......|.... ..-...|+
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal--------------------------~~~~--~~~~~~~lw~~~~-~fE~~~G~ 556 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSI--------------------------DKIS--DSHLLKMIFQKVI-FFESKVGS 556 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHT--------------------------TTSS--STTHHHHHHHHHH-HHHHHTCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH--------------------------HhcC--CHHHHHHHHHHHH-HHHHHcCC
Confidence 99888888888888888888777433 3333 0124556777777 77778899
Q ss_pred hhhHHHHHhhhcCCCCCc
Q 013948 363 QSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 363 ~~~A~~~~~~al~l~P~~ 380 (433)
.+.+...++++.+..|++
T Consensus 557 ~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 557 LNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp SHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999999999997
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.07 E-value=7.3e-10 Score=85.46 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc--HHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY--SKAYSRLGLA 255 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~ 255 (433)
+.+++.+|.+++..|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|++++++.|.. ......+..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~ 86 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDA 86 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999987643 3344444444
Q ss_pred HHH
Q 013948 256 YYA 258 (433)
Q Consensus 256 ~~~ 258 (433)
+..
T Consensus 87 l~~ 89 (100)
T 3ma5_A 87 KLK 89 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.05 E-value=3.9e-09 Score=97.93 Aligned_cols=147 Identities=10% Similarity=-0.006 Sum_probs=116.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-----C-HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN-----N-AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~-~~~~~~la~ 220 (433)
.|++++|+.++.++|...|. ....+++..++.++...|+.+.|.+.+++..+.+|+ + ..+...-|+
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~--------~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~ 184 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEA--------EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESY 184 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCS--------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCC--------cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHH
Confidence 58999999999999887651 123889999999999999999999999999999983 3 333333355
Q ss_pred HHHHhh--cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh----------CCCCHHHHHHHH
Q 013948 221 AYTQIH--QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL----------DPNNEAVKENIR 288 (433)
Q Consensus 221 ~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~----------~p~~~~~~~~l~ 288 (433)
+.+..| ++.+|+..|+++....|+.......+. ++..+|++++|.. .++.+++. +|+++.++.++.
T Consensus 185 v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~-~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i 262 (310)
T 3mv2_B 185 IKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG-IVELLLSDYYSVEQKENAVLYKPTFLANQI 262 (310)
T ss_dssp HHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH-HHHHHHSHHHHTTTCHHHHSSHHHHHHHHH
T ss_pred HHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH-HHHHHHHhcccccccccCCCCCHHHHHHHH
Confidence 577777 999999999999998887333333333 8999999999999 99988876 588999999998
Q ss_pred HHHHHHHHHHHhccccc
Q 013948 289 MAEQKLREERQRTGWDQ 305 (433)
Q Consensus 289 ~~~~~~~~~~~a~~~~~ 305 (433)
.+...+|+ .+.++..
T Consensus 263 ~l~~~lgk--~a~~l~~ 277 (310)
T 3mv2_B 263 TLALMQGL--DTEDLTN 277 (310)
T ss_dssp HHHHHTTC--TTHHHHH
T ss_pred HHHHHhCh--HHHHHHH
Confidence 88888886 4444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-09 Score=107.24 Aligned_cols=128 Identities=9% Similarity=0.006 Sum_probs=110.1
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCC---HHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL-----CGNN---AVYYSN 217 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~ 217 (433)
..|+|++|+.++++++++.... .+..++..+.++.++|.+|..+|+|++|+.++++++.+ .|++ ...+++
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~--lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPV--FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTT--BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3799999999999999986543 33456788999999999999999999999999999976 3444 578999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhc-----CCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 218 RAAAYTQIHQYAEAVRDCLKSIDI-----DPNYS---KAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 218 la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
+|.+|..+|++++|+..|++|+++ .|+++ ....+++.++..++.|.+|.. .|.++.+-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~-~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF-MYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 999999999999999999999976 56664 566789999999999999999 99888653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.99 E-value=3.1e-09 Score=109.87 Aligned_cols=219 Identities=12% Similarity=0.056 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHhhcH
Q 013948 150 VDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAI-ELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228 (433)
Q Consensus 150 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 228 (433)
.......|+++|...|.. +..|+..+..+...|+.++|+ ..|.+|+..+|.+..+|+.++......|++
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~----------~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~ 394 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFA----------PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKI 394 (679)
T ss_dssp HHHHHHHHHHHHHHTTTC----------HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence 445667899999998887 889999999998899988997 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-----------CCC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CCCCHHHHH
Q 013948 229 AEAVRDCLKSIDI-----------DPN-----------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL-DPNNEAVKE 285 (433)
Q Consensus 229 ~~A~~~~~~al~~-----------~p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~-~p~~~~~~~ 285 (433)
+.|...|++++.. .|. ...+|...+....+.|+.+.|.. .|.+|++. .+....++.
T Consensus 395 e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~-vf~~A~~~~~~~~~~lyi 473 (679)
T 4e6h_A 395 PEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK-IFGKCRRLKKLVTPDIYL 473 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHTGGGSCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhcCCCChHHHH
Confidence 9999999999875 253 45678888888888999999999 99999987 444455665
Q ss_pred HHHHHHHHHHH-HHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChh
Q 013948 286 NIRMAEQKLRE-ERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQS 364 (433)
Q Consensus 286 ~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~ 364 (433)
..+.+....+. .+.|...+.. +++..| +.+..|...+ ......|+.+
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~--------------------------~Lk~~p-----~~~~~w~~y~-~fe~~~~~~~ 521 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLEL--------------------------GLKYFA-----TDGEYINKYL-DFLIYVNEES 521 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHH--------------------------HHHHHT-----TCHHHHHHHH-HHHHHHTCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHH--------------------------HHHHCC-----CchHHHHHHH-HHHHhCCCHH
Confidence 54444433322 3444333321 566778 8888888888 8888889999
Q ss_pred hHHHHHhhhcCCCCC--c-ccccccccccc--cCCcHHHHHHHHHHHhhcCC
Q 013948 365 RQGEDSNVSGSDEPG--I-RIGGNINLNFG--ENMPEDITGALRSMMEMFSG 411 (433)
Q Consensus 365 ~A~~~~~~al~l~P~--~-~~~~~~~~~l~--~~~~~~~~~a~~~~~~~~~~ 411 (433)
.|...|++++...|+ . ..+-.....+. ..+.+.+....+++.+.+..
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999884 2 11111111221 34455566666666655543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.98 E-value=8.9e-10 Score=104.01 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS 246 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 246 (433)
+.++..++..+...|++++|+..+++|+.++| +...|..+|.++...|++++|++.|.+|+.++|..+
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 66666666666666777777777777777775 356666777777777777777777777777777664
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.5e-09 Score=80.34 Aligned_cols=71 Identities=18% Similarity=0.360 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013948 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSK-AYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286 (433)
Q Consensus 215 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~ 286 (433)
.+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+. +|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALN-NYQSAIELNPDSPALQAR 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHCTTSTHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCcHHHHHH
Confidence 367899999999999999999999999999999 99999999999999999999 999999999999988744
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.3e-09 Score=104.16 Aligned_cols=127 Identities=17% Similarity=0.137 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhc-----CCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-----CCCc-
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALC-----GNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-----DPNY- 245 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~- 245 (433)
.....+..+..+|+|++|+..|++++++. |++ ...+.++|.+|..+|+|++|+.++++++.+ .|++
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 34445556778999999999999999873 333 578999999999999999999999999977 3444
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHHHHHHHHHhccccccc
Q 013948 246 --SKAYSRLGLAYYAQGNYNDAIEKGFKKALQL-----DPNNEA---VKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 246 --~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~-----~p~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
...+.+||.+|..+|+|++|+. .|++|+++ .|+++. ....++.++..++.+.+|+..+..+
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~-~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHG-MICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999 99999975 466654 5567888899999999988876654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-08 Score=82.98 Aligned_cols=102 Identities=13% Similarity=0.095 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh---cHHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHHcCCHHHHHH
Q 013948 193 QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH---QYAEAVRDCLKSIDID-P-NYSKAYSRLGLAYYAQGNYNDAIE 267 (433)
Q Consensus 193 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~ 267 (433)
....+.+.|.+.+..++.+..+.+++|+++.+.+ +..+++..++.+++.+ | ++.+++|.+|..++++|+|++|..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4566778888888889999999999999999988 7779999999999999 7 678999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013948 268 KGFKKALQLDPNNEAVKENIRMAEQKLR 295 (433)
Q Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~~ 295 (433)
+++++|+++|++..+......+.....
T Consensus 93 -y~~~lL~ieP~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 93 -YVRGLLQTEPQNNQAKELERLIDKAMK 119 (152)
T ss_dssp -HHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999888777765553
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-08 Score=95.10 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=100.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC-------HHHHH-HHHH--HHHHhcCCCHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ-------YSDAI-ELYS--FAIALCGNNAVYYS 216 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~-------~~~A~-~~~~--~al~~~p~~~~~~~ 216 (433)
..++.+|+.+|+++++++|.. +.++..++.++..... ...++ ..+. .++..+|.++.++.
T Consensus 212 ~~~~~~A~~l~e~Al~lDP~~----------a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~ 281 (372)
T 3ly7_A 212 DKSLNRASELLGEIVQSSPEF----------TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQ 281 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHH
Confidence 467899999999999999998 7777777776642111 11111 1222 23356799999999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 217 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
.+|.++...|++++|+..+++++.++|+ ..+|..+|.++...|++++|++ .|++|+.++|..+.
T Consensus 282 alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e-~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 282 IKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAAD-AYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHSCSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcCCCcCh
Confidence 9999999999999999999999999975 6788999999999999999999 99999999998764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.6e-08 Score=75.50 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=64.9
Q ss_pred cCCCHHHHHHHHHHHHHhhc---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 208 CGNNAVYYSNRAAAYTQIHQ---YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 208 ~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|.+++..|+|++|+. +|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~-~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAID-TWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCC
Confidence 68889999999999987766 6999999999999999999999999999999999999999 999999998884
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=2.9e-08 Score=81.34 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=97.1
Q ss_pred ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHH
Q 013948 191 SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA----QGNYNDAI 266 (433)
Q Consensus 191 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~ 266 (433)
.+++++|+..|+++.+.....+ . +|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3578999999999998874444 3 999999999999999999999997 789999999999999 89999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHhcccccccC
Q 013948 267 EKGFKKALQLDPNNEAVKENIRMAEQK----LREERQRTGWDQTTS 308 (433)
Q Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 308 (433)
. +|+++.+. .++.+..+||.+|.. .++.++|..+++++.
T Consensus 82 ~-~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 82 Q-YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp H-HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred H-HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 9 99999987 789999999999998 788999998887554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.6e-07 Score=71.55 Aligned_cols=76 Identities=20% Similarity=0.168 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHH
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID-------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~ 284 (433)
+.-++.+|..++..++|..|+.+|++|++.. +..+.++..+|.+++++|+++.|+. .++++++++|++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~-~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL-LTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHH-HHHHHHhcCCCCHHHH
Confidence 3445556666666666666666666666542 3445666777777777777777777 7777777777777666
Q ss_pred HHHH
Q 013948 285 ENIR 288 (433)
Q Consensus 285 ~~l~ 288 (433)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6665
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-07 Score=77.23 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=87.4
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhc-C-CCHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ---QYSDAIELYSFAIALC-G-NNAVYYSNRAA 220 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~ 220 (433)
.......+...|.+.++..+.+ .++.+.+|.++...+ ++.+++..++..++.+ | +..+++|++|.
T Consensus 10 ~~~~l~~~~~~y~~e~~~~~~~----------~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv 79 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAAGSVS----------KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 79 (152)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCC----------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCCc----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHH
Confidence 3577888888899888866654 889999999999988 7779999999999998 7 56899999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 255 (433)
.++++|+|++|..+++++++++|++..+....-.+
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999999999999999999999998877655444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.68 E-value=8e-06 Score=81.55 Aligned_cols=205 Identities=10% Similarity=0.044 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH--------
Q 013948 150 VDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAA-------- 221 (433)
Q Consensus 150 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-------- 221 (433)
.+.....|++++...|.. +..|+..+..+...|+.++|...|++|+.. |.+...|+..+..
T Consensus 195 ~~Rv~~~ye~al~~~p~~----------~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~ 263 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYA----------EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYG 263 (493)
T ss_dssp HHHHHHHHHHHHHHTTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHH
T ss_pred HHHHHHHHHHHHHcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHH
Confidence 566778999999998877 889999999999999999999999999999 9987666554443
Q ss_pred --------------------------------HHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHH
Q 013948 222 --------------------------------YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG-NYNDAIEK 268 (433)
Q Consensus 222 --------------------------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~ 268 (433)
..+.+..+.|...|.+| ...+.....|...|.+-+..+ +.+.|..
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~- 341 (493)
T 2uy1_A 264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYN- 341 (493)
T ss_dssp HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHH-
T ss_pred HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHH-
Confidence 22345566666666666 322234455555555555444 4667777
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHH
Q 013948 269 GFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASM 348 (433)
Q Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a 348 (433)
.|+.+++..|+++..|..++......|+.+.+...+.. + + .....
T Consensus 342 ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er--------------------------~----~-----k~~~l 386 (493)
T 2uy1_A 342 IFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKR--------------------------L----E-----KTSRM 386 (493)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH--------------------------S----C-----CBHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------H----H-----HHHHH
Confidence 77777776666666655555544555555544444331 1 2 22344
Q ss_pred HHHHhhcccccCCChhhHHHHHhhhcC-------CCCCcccccccccccccCCcHHHHHHHHHHHhhcC
Q 013948 349 LMNMASNMPQAQPSQSRQGEDSNVSGS-------DEPGIRIGGNINLNFGENMPEDITGALRSMMEMFS 410 (433)
Q Consensus 349 ~~~la~~~~~~~g~~~~A~~~~~~al~-------l~P~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~ 410 (433)
|.... ..-...|+.+.+...+++++. .+|. .++-. ..+.|...+.+..+..+++
T Consensus 387 w~~~~-~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~-----~~~~~--~~~fe~~~g~l~~~~~~~~ 447 (493)
T 2uy1_A 387 WDSMI-EYEFMVGSMELFRELVDQKMDAIKADAILPPL-----PPREH--NVQMEGILGRYHCFLDSFN 447 (493)
T ss_dssp HHHHH-HHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCC-----CCC----CCCCCHHHHHHHHHHHHHC
T ss_pred HHHHH-HHHHHCCCHHHHHHHHHHHHHHhcccccCCcc-----ccccc--HHHHHHHhhhHHHHHHHhh
Confidence 44444 444455888888888888764 1222 11111 2455555566666666653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-07 Score=71.89 Aligned_cols=77 Identities=17% Similarity=0.069 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALC-------GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYS 250 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 250 (433)
+...+.+|..++..++|..|+..|++|++.. +..+.++..+|.++.++|+++.|+..++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 5678899999999999999999999999874 235789999999999999999999999999999999999988
Q ss_pred HHHH
Q 013948 251 RLGL 254 (433)
Q Consensus 251 ~lg~ 254 (433)
+++.
T Consensus 85 n~~~ 88 (104)
T 2v5f_A 85 NLKY 88 (104)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 8773
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-07 Score=71.55 Aligned_cols=69 Identities=14% Similarity=0.067 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHccC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH
Q 013948 178 AEIFKCQGNRVMQSQQ---YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS 246 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 246 (433)
+..+..+|.+++..++ .++|...+++++.++|+++.+++.+|.++++.|+|++|+.+++++++.+|..+
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 8899999999976665 79999999999999999999999999999999999999999999999999853
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.7e-07 Score=90.31 Aligned_cols=100 Identities=11% Similarity=0.031 Sum_probs=79.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCC---HHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL-----CGNN---AVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~l 218 (433)
.|+|++|+..+++++.+.... .+..++..+..+.++|.+|..+|+|++|+.++++++.+ .|++ ...++++
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~--lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSV--FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTT--BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCc--cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 478899999999999876442 23456778888999999999999999999999999876 2333 5678889
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhc-----CCCcHHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDI-----DPNYSKA 248 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~ 248 (433)
|.+|..+|++++|+..|++|+++ .|+++..
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 99999999999999999988876 5666644
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=6.1e-07 Score=87.84 Aligned_cols=96 Identities=15% Similarity=0.174 Sum_probs=81.7
Q ss_pred HHccCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-----CCC---cHHHHHHH
Q 013948 189 MQSQQYSDAIELYSFAIAL-----CGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-----DPN---YSKAYSRL 252 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~l 252 (433)
...|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+ .|+ -...+.+|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4568999999999999986 3444 567999999999999999999999999977 344 45679999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhh-----CCCCHHHHH
Q 013948 253 GLAYYAQGNYNDAIEKGFKKALQL-----DPNNEAVKE 285 (433)
Q Consensus 253 g~~~~~~g~~~~A~~~~~~~al~~-----~p~~~~~~~ 285 (433)
|.+|..+|+|++|+. .|++|+++ .|+++.+..
T Consensus 389 a~~~~~qg~~~eA~~-~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 389 GRLYMGLENKAAGEK-ALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHTTCHHHHHH-HHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHhccCHHHHHH-HHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999 99999975 577776543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=8.5e-07 Score=80.44 Aligned_cols=105 Identities=12% Similarity=0.053 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHHHHH-----cc------CHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHh-----hcHHHHHHHHH
Q 013948 175 KNLAEIFKCQGNRVMQ-----SQ------QYSDAIELYSFAIALCGN--NAVYYSNRAAAYTQI-----HQYAEAVRDCL 236 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~-----~~------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----~~~~~A~~~~~ 236 (433)
+...+.++..|.+... .| ....|...++++++++|+ +..+|..+|.+|... |+.++|..+|+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 3346666665555432 23 357899999999999999 677999999999995 99999999999
Q ss_pred HHHhcCCCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhCCCC
Q 013948 237 KSIDIDPNY-SKAYSRLGLAYYA-QGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 237 ~al~~~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~~al~~~p~~ 280 (433)
++++++|+. ..+++..|..+.. .|++++|.. ++++++..+|..
T Consensus 229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~-~L~kAL~a~p~~ 273 (301)
T 3u64_A 229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDE-ALDRALAIDPES 273 (301)
T ss_dssp HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHH-HHHHHHHCCGGG
T ss_pred HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHH-HHHHHHcCCCCC
Confidence 999999975 9999999999988 499999999 999999988763
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.3e-07 Score=89.00 Aligned_cols=108 Identities=9% Similarity=0.111 Sum_probs=87.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-----CCCc---HHH
Q 013948 185 GNRVMQSQQYSDAIELYSFAIAL-----CGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-----DPNY---SKA 248 (433)
Q Consensus 185 g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~ 248 (433)
...+..+|+|++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+ .|++ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34466789999999999999976 3444 578999999999999999999999999976 3444 567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh-----CCCCHHHH---HHHHHHHHH
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQL-----DPNNEAVK---ENIRMAEQK 293 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~~-----~p~~~~~~---~~l~~~~~~ 293 (433)
+++||.+|..+|++++|+. .|++|+++ .|+++.+. .+|+.+...
T Consensus 374 l~nLa~~~~~~g~~~eA~~-~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMK-NLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 8999999999999999999 99999975 56766544 445555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.1e-07 Score=88.47 Aligned_cols=110 Identities=9% Similarity=0.028 Sum_probs=89.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCC---HHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL-----CGNN---AVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~l 218 (433)
.|++++|+..+++++.+.... .+..++..+..+.++|.+|..+|+|++|+.++++++.+ .|++ ...++++
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~--lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSER--LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCC--CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCc--CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 589999999999999864322 23456778999999999999999999999999999976 2444 5679999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhc-----CCCcHH---HHHHHHHHHHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDI-----DPNYSK---AYSRLGLAYYA 258 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~lg~~~~~ 258 (433)
|.+|..+|++++|+..|++|+++ .|+++. ++.+|+.+...
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999976 577764 44556665544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.44 E-value=3.3e-06 Score=66.74 Aligned_cols=102 Identities=13% Similarity=0.090 Sum_probs=88.2
Q ss_pred cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHH---HHHHHHHHHhcC-C-CcHHHHHHHHHHHHHcCCHHHHH
Q 013948 192 QQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAE---AVRDCLKSIDID-P-NYSKAYSRLGLAYYAQGNYNDAI 266 (433)
Q Consensus 192 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~ 266 (433)
.....+.+.|.+.+..++....+.+++|+++.+..+... ++..++..++.+ | ..-+++|.+|..++++|+|++|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 345567777888888888899999999999999887766 999999999987 5 57799999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013948 267 EKGFKKALQLDPNNEAVKENIRMAEQKL 294 (433)
Q Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (433)
. +++..|++.|++..+......+..++
T Consensus 95 ~-~~~~lL~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 95 K-YVRGLLQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp H-HHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9 99999999999999887776665443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1e-05 Score=73.44 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=84.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhcCCC-HHHH
Q 013948 142 DGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ-----SQQYSDAIELYSFAIALCGNN-AVYY 215 (433)
Q Consensus 142 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~-----~~~~~~A~~~~~~al~~~p~~-~~~~ 215 (433)
......+...+|...++++++++|+. ....+|..+|..|.. -|+.++|..+|++|++++|+. ...+
T Consensus 171 gg~~Al~~l~~A~a~lerAleLDP~~--------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~ 242 (301)
T 3u64_A 171 LGSALPDTVHAAVMMLERACDLWPSY--------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHH 242 (301)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHCTTH--------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHH
T ss_pred CChHHHHhHHHHHHHHHHHHHhCCCc--------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHH
Confidence 33445688999999999999999983 126699999999998 499999999999999999975 9999
Q ss_pred HHHHHHHHH-hhcHHHHHHHHHHHHhcCCCc
Q 013948 216 SNRAAAYTQ-IHQYAEAVRDCLKSIDIDPNY 245 (433)
Q Consensus 216 ~~la~~~~~-~~~~~~A~~~~~~al~~~p~~ 245 (433)
+.+|..+.. .|++++|..++++++..+|..
T Consensus 243 v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 243 ITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999988 599999999999999998874
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.01 E-value=7.5e-05 Score=58.94 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=81.2
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhc-C-CCHHHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSD---AIELYSFAIALC-G-NNAVYYSNRAAAY 222 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~ 222 (433)
..+..+...|.+.+...+.. ..+.+.+|.++....+... +|..++..+..+ | ....++|.+|..+
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s----------~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVS----------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCC----------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCc----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 45667777777777755443 7889999999998887666 999999988876 4 4678999999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 255 (433)
+++|+|++|..+++.+|+..|+|..+......+
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999998877655444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00022 Score=57.61 Aligned_cols=105 Identities=14% Similarity=0.010 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHccCH------HHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 013948 178 AEIFKCQGNRVMQSQQY------SDAIELYSFAIALCGNN--------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 243 (433)
.+.|+.........|+. ++-++.|++|+..-|.. ..+|...|.. ...++.++|.+.|+.++++..
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhH
Confidence 88899888888888998 89999999999987753 4567777755 677999999999999999988
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHH
Q 013948 244 NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284 (433)
Q Consensus 244 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~ 284 (433)
..+.+|...|..-.++|+...|.. .+.+++.+.|...+..
T Consensus 92 kFAKiwi~~AqFEiRqgnl~kARk-ILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 92 KFAFVHISFAQFELSQGNVKKSKQ-LLQKAVERGAVPLEML 131 (161)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTTCBCHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHH-HHHHHhccCCCcHHHH
Confidence 899999999999999999999999 9999999999876543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00033 Score=57.79 Aligned_cols=140 Identities=8% Similarity=0.083 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 013948 123 LFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYS 202 (433)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 202 (433)
++++....+.. |.|+.|+-....++.+...+. ....+.....++..+|+.++..++|..|...|+
T Consensus 23 l~dqik~L~d~--------------~LY~sA~~La~lLlSl~~~~~-~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~ 87 (167)
T 3ffl_A 23 VIDHVRDMAAA--------------GLHSNVRLLSSLLLTLSNNNP-ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYT 87 (167)
T ss_dssp HHHHHHHHHHT--------------TCHHHHHHHHHHHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--------------hhHHHHHHHHHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 45566666655 899999999999888865442 122334557889999999999999999999999
Q ss_pred HHHHhcC---CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC
Q 013948 203 FAIALCG---NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279 (433)
Q Consensus 203 ~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~ 279 (433)
+||.... ........++. ...+. ....+ +...++.|.++.||..++++++|+. .++.. ...-.
T Consensus 88 qALq~~k~l~k~~s~~~~~~~----~ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~-~Le~I-p~k~R 153 (167)
T 3ffl_A 88 MALQQKKALSKTSKVRPSTGN----SASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIA-ILDGI-PSRQR 153 (167)
T ss_dssp HHHHHHHCC-------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHH-HHHTS-CGGGC
T ss_pred HHHHHHHHHhcCCCccccccc----cCCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHH-HHhcC-Cchhc
Confidence 9987642 12211111100 00000 01112 3455677777777777777777777 54432 11223
Q ss_pred CHHHHHHHHHHH
Q 013948 280 NEAVKENIRMAE 291 (433)
Q Consensus 280 ~~~~~~~l~~~~ 291 (433)
.+.+...||+.|
T Consensus 154 t~kvnm~LakLy 165 (167)
T 3ffl_A 154 TPKINMLLANLY 165 (167)
T ss_dssp CHHHHHHHHHHC
T ss_pred CHHHHHHHHHHh
Confidence 555555555544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00074 Score=67.26 Aligned_cols=168 Identities=8% Similarity=-0.091 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013948 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKA 273 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~a 273 (433)
.......|++++...|..+.+|+..+..+...|+.++|...|++|+.. |.+...|+..+... ..+ +... .+..+
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~~~-~l~~~ 268 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AVYG-DLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HHHH-HHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HHHH-HHHHH
Confidence 455778999999999999999999999999999999999999999999 99887777554431 111 1122 22221
Q ss_pred HhhC----------CCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh-----hhh-hhcCCCCCCCCCcc--ccc
Q 013948 274 LQLD----------PNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQE-----SNQ-STGGFRSHGTPPSF--TMP 335 (433)
Q Consensus 274 l~~~----------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~A~~~~--al~ 335 (433)
.... +....+|...+......+..+.|...+..+..+..... +.+ +...++++.|...| ++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 1100 11235566666666666667777666655521111111 111 11224677788888 777
Q ss_pred CCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhh
Q 013948 336 FNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVS 373 (433)
Q Consensus 336 ~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~a 373 (433)
..| +.+..+...+ ......|+.+.|...|+++
T Consensus 349 ~~~-----~~~~~~~~yi-d~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 349 KHP-----DSTLLKEEFF-LFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HCT-----TCHHHHHHHH-HHHHHHTCHHHHHHHHHHS
T ss_pred HCC-----CCHHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 778 7777777777 7778889999999999998
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0004 Score=54.95 Aligned_cols=85 Identities=16% Similarity=0.111 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHhhcH---HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013948 211 NAVYYSNRAAAYTQIHQY---AEAVRDCLKSIDIDPN-YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286 (433)
Q Consensus 211 ~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~ 286 (433)
.+.+.+++|+++.+..+. .+++..+...++.+|. ..++++.+|..++++|+|++|.. +.+.+|++.|+|..+...
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~-y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR-YVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHH-HHHHHHhhCCCCHHHHHH
Confidence 678888889888887754 5688888888888884 57888999999999999999999 899999999999888777
Q ss_pred HHHHHHHHHH
Q 013948 287 IRMAEQKLRE 296 (433)
Q Consensus 287 l~~~~~~~~~ 296 (433)
...+..++.+
T Consensus 118 k~~Ie~ki~k 127 (134)
T 3o48_A 118 KSMVEDKIQK 127 (134)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7666655543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0012 Score=52.85 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHHHhhcH---HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHH
Q 013948 209 GNNAVYYSNRAAAYTQIHQY---AEAVRDCLKSIDIDPN-YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284 (433)
Q Consensus 209 p~~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~ 284 (433)
.-...+.|++|+++.+..+. .+++..++..++.+|. ..+++|.+|..++++|+|++|.. +.+..|+..|+|..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~-y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR-YVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHH-HHHHHHhcCCCcHHHH
Confidence 45789999999999998754 5799999999999884 67899999999999999999999 9999999999999988
Q ss_pred HHHHHHHHHH
Q 013948 285 ENIRMAEQKL 294 (433)
Q Consensus 285 ~~l~~~~~~~ 294 (433)
.....+..++
T Consensus 115 ~Lk~~Ie~~i 124 (144)
T 1y8m_A 115 ALKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766665443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00023 Score=58.69 Aligned_cols=118 Identities=15% Similarity=0.096 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC---Cc
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP---NY 245 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~ 245 (433)
.++++.-...++..|.|+.|+-....++.+..++ ..+++.+|.+++..++|..|...|+++|.... .+
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 5667777788889999999999988877664332 34788899999999999999999999877642 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 246 ~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
......+ +. +. -...... .+.+.++.+.++.|+.+++++.+|+...+...
T Consensus 100 ~s~~~~~-------~~-~s----s~p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 100 SKVRPST-------GN-SA----STPQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp -----------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred CCccccc-------cc-cC----CCccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 2221111 10 00 1111112 24567899999999999999999999876543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0064 Score=60.54 Aligned_cols=151 Identities=11% Similarity=0.031 Sum_probs=110.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhc-CCCHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS---------QQYSDAIELYSFAIALC-GNNAVYYS 216 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~-p~~~~~~~ 216 (433)
.|++++|+.+|++.....-. |+ ...|..+-..+... +..++|.+.|.+..... +-+...|.
T Consensus 39 ~G~~~~A~~lf~~M~~~Gv~--------pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn 109 (501)
T 4g26_A 39 KGDVLEALRLYDEARRNGVQ--------LS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFT 109 (501)
T ss_dssp SCCHHHHHHHHHHHHHHTCC--------CC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCC--------CC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999998875211 11 34455444444433 34788888888876642 22677788
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHH
Q 013948 217 NRAAAYTQIHQYAEAVRDCLKSIDID-PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD-PNNEAVKENIRMAEQKL 294 (433)
Q Consensus 217 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 294 (433)
.+-.+|.+.|++++|+..+++..+.. .-+...|..+-..|.+.|++++|.. .|++..+.. .-+...+..+-.++.+.
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~-l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE-VDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 88888899999999999998887763 2356678888888889999999999 888887653 23566777888888888
Q ss_pred HHHHHhccccccc
Q 013948 295 REERQRTGWDQTT 307 (433)
Q Consensus 295 ~~~~~a~~~~~~~ 307 (433)
|+.++|...++..
T Consensus 189 g~~d~A~~ll~~M 201 (501)
T 4g26_A 189 KNADKVYKTLQRL 201 (501)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8888887775544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.013 Score=58.21 Aligned_cols=136 Identities=10% Similarity=0.041 Sum_probs=105.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-GNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 225 (433)
.+.+++|.++|.+.....-. |+ ..+|..+-..+.+.|++++|.++|.+..... .-+...|..+-..|.+.
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~--------Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~ 153 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVV--------PN-EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 153 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCC--------CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHhCCC--------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC
Confidence 47889999999987664210 11 5678888899999999999999999987652 23678888888999999
Q ss_pred hcHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHH
Q 013948 226 HQYAEAVRDCLKSIDIDP-NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL--DPNNEAVKENIRMAEQK 293 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~--~p~~~~~~~~l~~~~~~ 293 (433)
|+.++|...|+...+..- -+...|..+-.++.+.|++++|.. .|++.-+. .|+ ...+..+-..+..
T Consensus 154 g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~-ll~~Mr~~g~~ps-~~T~~~l~~~F~s 222 (501)
T 4g26_A 154 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYK-TLQRLRDLVRQVS-KSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHTSSBC-HHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHH-HHHHHHHhCCCcC-HHHHHHHHHHHhc
Confidence 999999999999887642 356788889999999999999999 99987654 454 4445555444443
|
| >4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00014 Score=47.09 Aligned_cols=44 Identities=25% Similarity=0.426 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhhhhCC---CCCCCchhHHHHHHHHHHhhcCCCCCC
Q 013948 13 SRRIVRSFLHFLDSVEP---APGVDLEGLEVARECLTEVFKLDSPSA 56 (433)
Q Consensus 13 ~~~~~~~~~~~l~~~~~---~~~~~~~~~e~A~~~~~kAl~ldP~~~ 56 (433)
.++|+.+|+.||+.... +.....|.+|.|++|+..|++++|.+.
T Consensus 2 ~K~la~sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v~~~d~ 48 (52)
T 4gof_A 2 KKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDS 48 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCSSCC
T ss_pred chHHHHHHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCCCcccc
Confidence 46899999999988754 445577899999999999999999986
|
| >2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00026 Score=49.41 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=40.9
Q ss_pred CChhhHHHHHHHHHHhhhhCC---CCCCCchhHHHHHHHHHHhhcCCCCCC
Q 013948 9 DSPLSRRIVRSFLHFLDSVEP---APGVDLEGLEVARECLTEVFKLDSPSA 56 (433)
Q Consensus 9 ~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~e~A~~~~~kAl~ldP~~~ 56 (433)
++...++|+.+|+.||+.... +.....|.+|.|++|+..|++++|.+.
T Consensus 3 ~~~~~K~la~sIi~FL~~~~~~~~ls~D~~ESLeVAiqCI~~aF~v~~~d~ 53 (74)
T 2lxb_A 3 DSASKEEIAALIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFEREAV 53 (74)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCCTTTH
T ss_pred CchhHHHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCCchhh
Confidence 456688999999999998854 444577899999999999999999985
|
| >4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00022 Score=51.63 Aligned_cols=63 Identities=24% Similarity=0.418 Sum_probs=47.5
Q ss_pred ChhhHHHHHHHHHHhhhhCC---CCCCCchhHHHHHHHHHHhhcCCCCCCC-----CCCCCchHHHHhhhh
Q 013948 10 SPLSRRIVRSFLHFLDSVEP---APGVDLEGLEVARECLTEVFKLDSPSAD-----GQRKPDSLIDIFNSQ 72 (433)
Q Consensus 10 ~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~e~A~~~~~kAl~ldP~~~~-----~~~~~~~l~~~~~~~ 72 (433)
+...++|+.+|+.||+.... +.....|.+|.|++|+..||+++|.+.. .-.....|..+|..+
T Consensus 16 ~~skKrLA~sIIdFL~~sv~~~~ls~D~~ESLEVAIqCI~~AF~Vd~~D~~~~v~~~~~g~q~L~eIf~~~ 86 (92)
T 4asv_A 16 SASKEEIAALIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFEREAVSGILGKSEFKGQHLADILNSA 86 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHSSBTTCCHHHHHHTC
T ss_pred hhhHHHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCCchhhhHHHhhhccCCCCHHHHHHHh
Confidence 34578899999999998854 4445778999999999999999999852 113355666666544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0039 Score=49.27 Aligned_cols=79 Identities=6% Similarity=-0.056 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHccC---HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQ---YSDAIELYSFAIALCGN-NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
..+.+.+|.++....+ ..++|..++..++.+|. ..++++.+|..++++|+|++|..+.+.+++..|+|..+.....
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 6788888888887764 56799999999998884 4789999999999999999999999999999999988766554
Q ss_pred HHH
Q 013948 254 LAY 256 (433)
Q Consensus 254 ~~~ 256 (433)
.+-
T Consensus 120 ~Ie 122 (134)
T 3o48_A 120 MVE 122 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0053 Score=49.17 Aligned_cols=78 Identities=6% Similarity=-0.045 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHccC---HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQ---YSDAIELYSFAIALCGN-NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
..+.+.+|.++....+ ..+++..++..+...|. ..+++|.+|..++++|+|++|..+.+.+|+..|+|..+.....
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 118 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 6788888888887764 46799999999998885 5789999999999999999999999999999999987765544
Q ss_pred HH
Q 013948 254 LA 255 (433)
Q Consensus 254 ~~ 255 (433)
.+
T Consensus 119 ~I 120 (144)
T 1y8m_A 119 MV 120 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.012 Score=60.99 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKS 238 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 238 (433)
...+...+..+..+|+|+-|+.+.++|+...|.+...|+.|+.||..+|+|+.|+-.++-+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4466667888889999999999999999999999999999999999999999999988776
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.013 Score=60.60 Aligned_cols=113 Identities=10% Similarity=0.060 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh--------cCCC------
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM---QSQQYSDAIELYSFAIAL--------CGNN------ 211 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~--------~p~~------ 211 (433)
-++.|+.++++....+|.. ..++..+.+.. ...+--+|+..+.++++. .+.+
T Consensus 264 ~~~~a~~~le~L~~~~p~~-----------~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 264 LVDFTIDYLKGLTKKDPIH-----------DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp GHHHHHHHHHHHHHHCGGG-----------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCch-----------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 3688999999999888864 23333332221 223445677777777642 2222
Q ss_pred ----HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013948 212 ----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKA 273 (433)
Q Consensus 212 ----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~a 273 (433)
...+...+.-+...|+|+-|+.+.++|+...|.....|+.|+.||..+|+|+.|+- .++.+
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALL-tLNSc 397 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALF-AINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH-HHHHS
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHH-HHhcC
Confidence 33566667778889999999999999999999999999999999999999999999 77765
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.19 Score=41.38 Aligned_cols=185 Identities=13% Similarity=0.053 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-----------------
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI----------------- 241 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------------- 241 (433)
+.-..++..++-.|+|..++-++. +-+.....+.-+.||.++++|..|+.+++..++-
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 345567888899999998876554 3456777888899999999999999999999932
Q ss_pred CCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHHHhcccccc-cCCCccchhhh
Q 013948 242 DPNYS-KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA--EQKLREERQRTGWDQT-TSSSHYSQESN 317 (433)
Q Consensus 242 ~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~~-~~~~~~~~~~~ 317 (433)
+|.+. ..+..+|.++.+.|+.++|+. ++.......|-.+.+-..+-.- ... .+.+.....-+. ...........
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~-y~~~Sf~~~~lf~~vEnliyeN~vp~~-~d~~~i~~~~~~~i~~~y~~d~~~ 186 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIG-HYVRSFGKSFLFSPVENLLLENKVPQK-RDKENVRQTGRRGIEEEYVSDSIE 186 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCCCHHHHHHHHHTTCCCCC-C-----------CHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhh-HhhhhcCCccccchHHHHHhhcCCCcc-cchHHHHhhhhccchhhhhhhHHH
Confidence 23444 355668999999999999999 9999998887655543222100 000 000000000000 00000000000
Q ss_pred hhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 318 QSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 318 ~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
++-.... ... -...-| .....+..-++..+..+|-.++...+|...-..||.+
T Consensus 187 lHe~~s~-----~~ikkY~n~iP-----GiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 187 FHESLSP-----SLVKKYMEHVP-----GIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp HHHHCCH-----HHHHHHHTSTT-----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred HHHhccH-----HHHHHHHHhCC-----CchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence 0000000 000 122346 6666666555578999999999999999998888864
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.025 Score=45.68 Aligned_cols=97 Identities=14% Similarity=0.054 Sum_probs=80.4
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
+-+++-++.|++|+...|... ..........|...+.. ...++.++|.+.|+.++.++...+.+|...|.--.++|+
T Consensus 33 ~~l~rlrd~YerAia~~Pp~k--~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgn 109 (161)
T 4h7y_A 33 ALLNKLIGRYSQAIEALPPDK--YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGN 109 (161)
T ss_dssp HHHHHHHHHHHHHHHHSCGGG--GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHcCCccc--cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccc
Confidence 445788899999999887652 22334456677777755 566999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHH
Q 013948 228 YAEAVRDCLKSIDIDPNYSK 247 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~ 247 (433)
...|...+.+++.+.|....
T Consensus 110 l~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 110 VKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHHHHHHHHHHHTTCBCHH
T ss_pred HHHHHHHHHHHhccCCCcHH
Confidence 99999999999999987654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.057 Score=48.19 Aligned_cols=128 Identities=11% Similarity=0.071 Sum_probs=91.5
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQR 300 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 300 (433)
-+++.|+.++|+..+...++.+|.+......+-..++-.|+|+.|.. .++.+.+++|.....-..+..+........+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~-QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~- 83 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADE-QLMQSIKLFPEYLPGASQLRHLVKAAQARKD- 83 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHhCchhhHHHHHHHHHHHHHHHHHH-
Confidence 35678899999999999999999999999999999999999999999 9999999999876544333222111111111
Q ss_pred cccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 301 TGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.+. -...| .+-..| .........+ ......|+.++|.+.-.+|++..|..
T Consensus 84 --vfa-G~~~P---------------------~~~g~~-----~~w~~~ll~A-l~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 84 --FAQ-GAATA---------------------KVLGEN-----EELTKSLVSF-NLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp --HTT-SCCCE---------------------ECCCSC-----HHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred --HHc-CCCCC---------------------CCCCCC-----HHHHHHHHHH-HHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 111 00111 133345 5566666666 66777899999999999999988876
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.062 Score=53.02 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
++..+|.+......+..|..+|.+|+.+.|++...+..||.+....|+.-+|+- +|.+++......+.+..+|...+.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y-~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIF-YYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHH-HHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHH-HHHHHHhcCCCChhHHHHHHHHHHH
Confidence 566677777777777888888888888888888888888888888888888887 8888887766677777777766654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.28 Score=46.81 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=71.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhcCCC----------------------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q 013948 185 GNRVMQSQQYSDAIELYSFAIALCGNN----------------------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID 242 (433)
Q Consensus 185 g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 242 (433)
|......|+.+.|...+.+|+.+.... ..+...++.++...|++.+|+..+..++..+
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~ 201 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH 201 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 333445677777888888887663211 1245566778889999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 243 PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 243 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
|-+..+|..+-.++...|+..+|+. .|+++-+
T Consensus 202 P~~E~~~~~lm~al~~~Gr~~~Al~-~y~~~r~ 233 (388)
T 2ff4_A 202 PYREPLWTQLITAYYLSDRQSDALG-AYRRVKT 233 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence 9999999999999999999999999 8887643
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.11 Score=51.29 Aligned_cols=81 Identities=19% Similarity=0.119 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...+..+|.+......+..|..+|.+|+.+.|++...++.+|.+....|+.-+|+-+|.+++......+.+..++...+.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999988888888888888876
Q ss_pred H
Q 013948 258 A 258 (433)
Q Consensus 258 ~ 258 (433)
.
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.27 Score=43.81 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=57.1
Q ss_pred HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHH
Q 013948 187 RVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSK 247 (433)
Q Consensus 187 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 247 (433)
.+++.|.+++|+......++.+|.|+.....+-.++.-.|+|+.|...++.+.+++|....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 4567899999999999999999999999999999999999999999999999999998754
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.71 Score=38.46 Aligned_cols=98 Identities=8% Similarity=-0.010 Sum_probs=66.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+++.|.++.++. ++ ...|..+|......|+++-|+++|+++- +.. .+..+|.-.|
T Consensus 18 lg~l~~A~e~a~~l-----~~----------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D~~---~L~~Ly~~tg 74 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-----ND----------SITWERLIQEALAQGNASLAEMIYQTQH-----SFD---KLSFLYLVTG 74 (177)
T ss_dssp TTCHHHHHHHHHHH-----CC----------HHHHHHHHHHHHHTTCHHHHHHHHHHTT-----CHH---HHHHHHHHHT
T ss_pred cCCHHHHHHHHHHh-----CC----------HHHHHHHHHHHHHcCChHHHHHHHHHhC-----CHH---HHHHHHHHhC
Confidence 38888888876653 22 6689999999999999999999999863 322 2334566677
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKA 273 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~a 273 (433)
+-+.-....+.+...+. + .....++..+|+++++++ .|.+.
T Consensus 75 ~~e~L~kla~iA~~~g~-~----n~af~~~l~lGdv~~~i~-lL~~~ 115 (177)
T 3mkq_B 75 DVNKLSKMQNIAQTRED-F----GSMLLNTFYNNSTKERSS-IFAEG 115 (177)
T ss_dssp CHHHHHHHHHHHHHTTC-H----HHHHHHHHHHTCHHHHHH-HHHHT
T ss_pred CHHHHHHHHHHHHHCcc-H----HHHHHHHHHcCCHHHHHH-HHHHC
Confidence 77665555555544432 1 223456678888888888 77553
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.31 Score=46.50 Aligned_cols=94 Identities=11% Similarity=0.050 Sum_probs=73.1
Q ss_pred chHHHHHHHHHHHHHHHhhcccccc------------chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAY------------NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYY 215 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 215 (433)
|+.+.|...+++++.+.....-... -......+...++..+...|++.+|+..+.+++..+|-+..+|
T Consensus 129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~ 208 (388)
T 2ff4_A 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLW 208 (388)
T ss_dssp TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 6788888888888887632210000 0112233455677778899999999999999999999999999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 216 SNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 216 ~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
..+-.++...|+..+|+..|+++.+.
T Consensus 209 ~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 209 TQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999987653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.26 Score=51.49 Aligned_cols=18 Identities=0% Similarity=-0.005 Sum_probs=11.2
Q ss_pred HHHHHHHHhhcccccCCCh
Q 013948 345 IASMLMNMASNMPQAQPSQ 363 (433)
Q Consensus 345 ~~~a~~~la~~~~~~~g~~ 363 (433)
.+......+ ..+...|+.
T Consensus 782 i~~~~~~~~-~~L~~~~~~ 799 (814)
T 3mkq_A 782 VNDIVTKWK-ENLILNGKN 799 (814)
T ss_dssp HHHHHHHHH-HHHHTTTCH
T ss_pred HHHHHHHHH-HHHHhccch
Confidence 455666666 666677764
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.37 Score=46.71 Aligned_cols=100 Identities=10% Similarity=-0.054 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC--CcH----HH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP--NYS----KA 248 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~----~~ 248 (433)
..++..+|..++..|++++|.++|.++....... ...+.....++...++|..+...+.++..+-. .++ ..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 5678899999999999999999999998876543 67888889999999999999999999876621 222 34
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
....|.++...++|..|.. .|-.++.-..
T Consensus 211 k~~~gl~~l~~r~f~~Aa~-~f~e~~~t~~ 239 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAK-LLVDSLATFT 239 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHH-HHHHHHHHSC
T ss_pred HHHHHHHHHHhChHHHHHH-HHHHHhccCC
Confidence 4456778888999999999 9988876543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.53 E-value=5.2 Score=37.95 Aligned_cols=122 Identities=9% Similarity=0.062 Sum_probs=89.5
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHH--HHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--C----HHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAE--IFKCQGNRVMQSQQYSDAIELYSFAIALCGN--N----AVYYSNRA 219 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la 219 (433)
+..+.-++++.++++-..+. +..+.. .-..+|..|+..|+|.+|...+.+.++.... + .+++..-.
T Consensus 73 ~~~~~~~~~~~~~~~~a~~~------~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~ 146 (394)
T 3txn_A 73 AGTGIEVQLCKDCIEWAKQE------KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLES 146 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 34466677777777754332 122222 3347899999999999999999998875433 2 46677788
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcC---CCc----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhh
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDID---PNY----SKAYSRLGLAYY-AQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~lg~~~~-~~g~~~~A~~~~~~~al~~ 276 (433)
.+|..++++.++...+.++.... +.+ +.....-|..+. ..++|..|.. +|-.+++-
T Consensus 147 ~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~-~F~eaf~~ 210 (394)
T 3txn_A 147 KTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFS-YFYEAFEG 210 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHH-HHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHH-HHHHHHhc
Confidence 89999999999999999987653 122 344555688888 8999999999 88888753
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.96 E-value=0.67 Score=48.31 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFA 204 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~a 204 (433)
...|..+|..+...++++.|+.+|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 456677777777777777777777765
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.18 Score=49.57 Aligned_cols=131 Identities=12% Similarity=0.009 Sum_probs=60.2
Q ss_pred CcchHHHHHHHHHHHHH--HHhhccccccchhhHHHHHHHHHHHHHHccCHHHHH----------HHHHHHHHh-----c
Q 013948 146 DPSQVDKASRIFHDAIN--EMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAI----------ELYSFAIAL-----C 208 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~----------~~~~~al~~-----~ 208 (433)
+.+++++|.++....+. ........ .-+.-.+..|+..+.++...|+..... ..+-.+++. +
T Consensus 148 d~k~~~~~~~~~~~~~~~~~l~~~nrr-tlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D 226 (523)
T 4b4t_S 148 DSKELEQLVEFNRKVVIPNLLCYYNLR-SLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD 226 (523)
T ss_dssp --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhHH-hHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence 46788888887766652 11110000 001223667777777777777665432 122222222 2
Q ss_pred CC-CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 209 GN-NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY-------SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 209 p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
+. .+.+++.+-..|...+.|++|.....++. .|.. ...++.+|.++.-+++|.+|.+ ++..|+...|.+
T Consensus 227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~-~L~~A~rkap~~ 303 (523)
T 4b4t_S 227 NETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANE-YIIAAIRKAPHN 303 (523)
T ss_dssp SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHTSSCSCS
T ss_pred cchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhCCcc
Confidence 22 26788888899999999999999999985 3432 4567789999999999999999 999999988754
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.82 E-value=3.4 Score=39.99 Aligned_cols=99 Identities=12% Similarity=0.079 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHhhcHHHHHHHHHHHHh---cCCCcH-
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN--N----AVYYSNRAAAYTQIHQYAEAVRDCLKSID---IDPNYS- 246 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~- 246 (433)
.+.....++.++...|++.+|...+.....-.-. + ..++.....++...+++..|...+.++.. -.+..+
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 4667788999999999999999999987643221 1 56788889999999999999999998742 233333
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 247 ---KAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 247 ---~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
..+...|.++...++|.+|.. +|..++..
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~-~y~e~~~~ 247 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQ-YLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHhc
Confidence 456668999999999999999 99988764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.90 E-value=4.3 Score=43.35 Aligned_cols=100 Identities=10% Similarity=-0.067 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-CCcHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIAL----CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDID-PNYSKAYSR 251 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 251 (433)
....+..+-..+.+.|+.++|..+|....+. ..-+...|+-+-..|.+.|+.++|.+.|++..+.. .-+...|..
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3557888889999999999999999775432 23477889999999999999999999999988764 235667777
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHhhC
Q 013948 252 LGLAYYAQGN-YNDAIEKGFKKALQLD 277 (433)
Q Consensus 252 lg~~~~~~g~-~~~A~~~~~~~al~~~ 277 (433)
+-.++.+.|+ .++|.. .|++..+..
T Consensus 206 LI~glcK~G~~~e~A~~-Ll~EM~~kG 231 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIER-CLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHTCCHHHHHH-HHHHHHHHT
T ss_pred HHHHHHhCCCcHHHHHH-HHHHHHHcC
Confidence 8788999898 478888 999887653
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=90.11 E-value=2.2 Score=35.17 Aligned_cols=71 Identities=11% Similarity=0.031 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH--Hh---------------cCCCHH-HHHHHHHHHHHhhcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAI--AL---------------CGNNAV-YYSNRAAAYTQIHQYAEAVRDCLKSI 239 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al--~~---------------~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al 239 (433)
..+.+..+.|+...++|..|+..++..+ ++ +|.+.+ .+..+|.++.+.|+-++|+.++....
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 6777888999999999999999999998 22 233433 46678999999999999999999999
Q ss_pred hcCCCcHHH
Q 013948 240 DIDPNYSKA 248 (433)
Q Consensus 240 ~~~p~~~~~ 248 (433)
..+|-.+.+
T Consensus 142 ~~~~lf~~v 150 (242)
T 3kae_A 142 GKSFLFSPV 150 (242)
T ss_dssp HHCCCHHHH
T ss_pred CCccccchH
Confidence 888865543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.24 E-value=3.5 Score=45.17 Aligned_cols=94 Identities=11% Similarity=0.042 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------------cCCCHHHHHHHHHHHHHhhcHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIAL-----------------------CGNNAVYYSNRAAAYTQIHQYAEAVRD 234 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~~~~~~A~~~ 234 (433)
+..-+.+|.++...|++++|..+|+++-.- ....+.+|+....++.+.+.++.+++.
T Consensus 842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f 921 (1139)
T 4fhn_B 842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 921 (1139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445689999999999999999999887311 011245677788889999999999999
Q ss_pred HHHHHhcCCC-cH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013948 235 CLKSIDIDPN-YS----KAYSRLGLAYYAQGNYNDAIEKGFKK 272 (433)
Q Consensus 235 ~~~al~~~p~-~~----~~~~~lg~~~~~~g~~~~A~~~~~~~ 272 (433)
.+.|++..+. +. ..|.++=..+...|+|++|.. .+..
T Consensus 922 a~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~-aL~~ 963 (1139)
T 4fhn_B 922 SLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV-ALMV 963 (1139)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH-HHHH
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH-HHHh
Confidence 9999987643 32 267778888899999999988 6644
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.57 E-value=2.1 Score=47.01 Aligned_cols=116 Identities=15% Similarity=0.086 Sum_probs=84.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc----------------------
Q 013948 184 QGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI---------------------- 241 (433)
Q Consensus 184 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------------- 241 (433)
+...+...+.++-+.+ .+...|.++...|.+|.++...|++++|..+|+++-.-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3445566677765544 34457788888899999999999999999999887321
Q ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC-CCHH----HHHHHHHHHHHHHHHHHhcccc
Q 013948 242 -DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP-NNEA----VKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 242 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p-~~~~----~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
....+..|+.+..++.+.+.++.+++ ..+.|++..+ ++.. .|..+=..+..+|++++|-...
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~-fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALE-FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHH-HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 11134567777888889999999999 8999998764 3332 5666777777888888875543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=86.84 E-value=3.9 Score=41.43 Aligned_cols=90 Identities=10% Similarity=-0.067 Sum_probs=53.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 013948 184 QGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYN 263 (433)
Q Consensus 184 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 263 (433)
++..+...+...++...+.+......++. ..-.++...+..|++..|...+.+.-...+..+...|.+|.++..+|+.+
T Consensus 258 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~ 336 (618)
T 1qsa_A 258 VAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREA 336 (618)
T ss_dssp HHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHH
Confidence 34334444434455666666554333332 22233333445678888877776654433345677777788777788888
Q ss_pred HHHHHHHHHHHh
Q 013948 264 DAIEKGFKKALQ 275 (433)
Q Consensus 264 ~A~~~~~~~al~ 275 (433)
+|.. .|+++..
T Consensus 337 ~a~~-~~~~~a~ 347 (618)
T 1qsa_A 337 EAKE-ILHQLMQ 347 (618)
T ss_dssp HHHH-HHHHHHT
T ss_pred HHHH-HHHHHhc
Confidence 8877 7777764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.27 E-value=6.9 Score=32.45 Aligned_cols=98 Identities=9% Similarity=0.042 Sum_probs=62.6
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 013948 189 MQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 268 (433)
...|+++.|.+..+.. ++...|-.+|...+..|+++-|..+|.++-.. -.+..+|.-.|+.+.-..
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~e~L~k- 81 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDVNKLSK- 81 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCHHHHHH-
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCHHHHHH-
Confidence 5678999998886654 57889999999999999999999999887332 234445566666655444
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 269 GFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
..+.+.... + . .....++..+|+.+++...+.
T Consensus 82 la~iA~~~g-~-~---n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 82 MQNIAQTRE-D-F---GSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHTT-C-H---HHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCc-c-H---HHHHHHHHHcCCHHHHHHHHH
Confidence 333333222 1 1 111223455666666655544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.10 E-value=19 Score=34.75 Aligned_cols=196 Identities=7% Similarity=-0.029 Sum_probs=114.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH---HH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAA---YT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~---~~ 223 (433)
.|++..|++.+...-+..... .+......+...+..+++..++|+...+.+.-..........+...+... +.
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~----~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l 104 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQA----SDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYL 104 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSS----CSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhc----cchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 367888887654333322111 12233366777788889999999988887765555444433332222211 11
Q ss_pred -HhhcHHHHHHHHHHHHhcC----C-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-C-CC----CHHHHH
Q 013948 224 -QIHQYAEAVRDCLKSIDID----P-------NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL-D-PN----NEAVKE 285 (433)
Q Consensus 224 -~~~~~~~A~~~~~~al~~~----p-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~-~-p~----~~~~~~ 285 (433)
.....+ .......+..- . ........|+.++...|++.+|.. .+.....- . .. -.+.+.
T Consensus 105 ~~~~~~d--~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~-iL~~l~~Et~~~~~~~~kve~~l 181 (445)
T 4b4t_P 105 KSSKSLD--LNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAAD-ILCELQVETYGSMEMSEKIQFIL 181 (445)
T ss_dssp HHHCTTH--HHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHCSSSCHHHHHHHHH
T ss_pred hcCCchh--HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHH-HHHHHHHHHHhcccHHHHHHHHH
Confidence 111111 11122222221 1 134567889999999999999999 88886531 1 11 145666
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHH-HHHHHHhhcccccCCChh
Q 013948 286 NIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIA-SMLMNMASNMPQAQPSQS 364 (433)
Q Consensus 286 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~-~a~~~la~~~~~~~g~~~ 364 (433)
...+++...+++.+|.....++..... .....| +.- ..+..+| .++...++|.
T Consensus 182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~--------------------~~~~~~-----~lk~~~~~~~~-~~~~~e~~y~ 235 (445)
T 4b4t_P 182 EQMELSILKGDYSQATVLSRKILKKTF--------------------KNPKYE-----SLKLEYYNLLV-KISLHKREYL 235 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHH--------------------HSSCCH-----HHHHHHHHHHH-HHHHHHCCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhc--------------------ccCCcH-----HHHHHHHHHHH-HHHHHhhhHH
Confidence 778888888888888877664321100 011122 333 3445555 8888889999
Q ss_pred hHHHHHhhhcC
Q 013948 365 RQGEDSNVSGS 375 (433)
Q Consensus 365 ~A~~~~~~al~ 375 (433)
+|-.+|..+++
T Consensus 236 ~a~~~y~e~~~ 246 (445)
T 4b4t_P 236 EVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99888887764
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=85.46 E-value=6.3 Score=37.39 Aligned_cols=111 Identities=9% Similarity=-0.004 Sum_probs=82.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---CCC----HHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC---GNN----AVYYSNRA 219 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~la 219 (433)
.|+|.+|.+.+.+.++.....+ +.....+.+......+...+++.++...|.+|.... +.+ +.+...-|
T Consensus 112 ~~~y~~a~~~i~~l~~~~~~~d----d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~G 187 (394)
T 3txn_A 112 TALYTEALALGAQLLRELKKLD----DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSG 187 (394)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSS----CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhccc----cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhh
Confidence 6999999999999998765532 235568888999999999999999999999987653 123 34566678
Q ss_pred HHHH-HhhcHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCC
Q 013948 220 AAYT-QIHQYAEAVRDCLKSIDIDPN-----YSKAYSRLGLAYYAQGN 261 (433)
Q Consensus 220 ~~~~-~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~ 261 (433)
..+. ..++|..|...|-.+++-... ...+...++.|-.-.++
T Consensus 188 i~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 188 ILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 8888 899999999999998754322 12344445555555555
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=84.02 E-value=15 Score=37.14 Aligned_cols=189 Identities=6% Similarity=-0.196 Sum_probs=107.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 181 FKCQGNRVMQSQQYSDAIELYSFAIALCGNNAV----YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 181 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
....+.......+.+.|...+.+.....+-+.. .+..+|.-+...+...++...+.+.....++........+. .
T Consensus 217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~-A 295 (618)
T 1qsa_A 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-A 295 (618)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHH-H
Confidence 344455555667899999999887654333322 22223333333443567778888776655544433333444 4
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCC-CCCCCCccccc
Q 013948 257 YAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFR-SHGTPPSFTMP 335 (433)
Q Consensus 257 ~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~al~ 335 (433)
...|+++.|.. +|.+.-.-........+.+|+++..+|+.++|...+..+...............|. +.-... .
T Consensus 296 lr~~d~~~a~~-~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~----~ 370 (618)
T 1qsa_A 296 LGTGDRRGLNT-WLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKID----K 370 (618)
T ss_dssp HHHTCHHHHHH-HHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCC----C
T ss_pred HHCCCHHHHHH-HHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCC----C
Confidence 56799999999 99876554445688899999999999999998887776653221111001111121 110000 1
Q ss_pred CCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 336 FNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 336 ~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
..+.....-........+ ..+...|....|...+...+..
T Consensus 371 ~~~~~~~~~~~~~~~~r~-~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARV-RELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp CCSCCCCHHHHSHHHHHH-HHHHHTTCHHHHHHHHHHHHTT
T ss_pred CChhHHhhhccChHHHHH-HHHHHCCChhhHHHHHHHHHhc
Confidence 111000000111224455 5677788888888888777653
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.76 E-value=6.6 Score=37.75 Aligned_cols=91 Identities=8% Similarity=0.045 Sum_probs=71.6
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--CC----HHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG--NN----AVYYSNRA 219 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la 219 (433)
+.|++++|.+.|.++....... ....+.++.+..++...++|..+...+.++..... .+ ..+....|
T Consensus 143 ~~Gd~~~A~~~~~~~~~~~~~~-------~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g 215 (429)
T 4b4t_R 143 QIGDKDNAEKTLGKSLSKAIST-------GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG 215 (429)
T ss_dssp HHCCCTTHHHHHHHHHHHHTCC-------CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 4599999999999988765443 34478888889999999999999999999876532 22 23455667
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCC
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p 243 (433)
.++...++|..|...|..++....
T Consensus 216 l~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 216 IHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHhChHHHHHHHHHHHhccCC
Confidence 888889999999999988877643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 433 | ||||
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 2e-19 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-18 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-17 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-14 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-14 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-14 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-13 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-12 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-10 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 1e-16 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 3e-14 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 3e-06 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 1e-13 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 6e-13 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 1e-12 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-12 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-12 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-11 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 5e-07 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 3e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 5e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 7e-08 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-07 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 6e-11 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 4e-09 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 1e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 2e-09 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 4e-09 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 4e-05 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 8e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 5e-09 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-06 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-06 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 6e-06 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.002 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 8e-08 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 9e-07 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 1e-05 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 5e-05 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 3e-07 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 8e-06 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 7e-07 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 4e-06 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 5e-05 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 0.003 |
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 83.9 bits (206), Expect = 2e-19
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
A+ K QGNR+ ++Y +A Y AI AVYY+NRA Y ++ Q +A+ DC +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN-----EAVKENIRMAEQ 292
++++D KA+ LG +Y++AI ++A L + + +R+A++
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIAN-LQRAYSLAKEQRLNFGDDIPSALRIAKK 122
Query: 293 KLREERQRTGWDQTTSSSHYSQESNQS 319
K + Q + Y +
Sbjct: 123 KRWNSIEERRIHQESELHSYLTRLIAA 149
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.8 bits (193), Expect = 3e-18
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
A K GN + + + A++ Y A L N Y +N+AA Y + Y + C K
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 238 SIDIDP-------NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA 290
+I++ +KAY+R+G +Y+ + Y DAI + K+L + +K + A
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHF-YNKSLAEHRTPDVLK-KCQQA 121
Query: 291 EQKLREE 297
E+ L+E+
Sbjct: 122 EKILKEQ 128
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.0 bits (201), Expect = 1e-17
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
+D A + AI E++ AY NLA K +G ++A + Y+ A+ LC
Sbjct: 252 LIDLAIDTYRRAI-ELQPHFPDAYC--NLANALKEKG-------SVAEAEDCYNTALRLC 301
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
+A +N A + EAVR K++++ P ++ A+S L QG +A+
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361
Query: 269 GFKKALQLDPNNEAVKENIRMAEQKL 294
+K+A+++ P N+ +++
Sbjct: 362 -YKEAIRISPTFADAYSNMGNTLKEM 386
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.8 bits (177), Expect = 1e-14
Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 1/166 (0%)
Query: 134 FHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ 193
+ PD S + + Q N A + G +
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253
AI + A+ L N Y N + + AV L+++ + PN++ + L
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 254 LAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQ 299
YY QG + AI+ +++A++L P+ N+ A ++ +
Sbjct: 245 CVYYEQGLIDLAIDT-YRRAIELQPHFPDAYCNLANALKEKGSVAE 289
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.4 bits (176), Expect = 2e-14
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 4/142 (2%)
Query: 155 RIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVY 214
RIF A+ ++ + + N A + + AI+ Y AI L +
Sbjct: 217 RIFDRAVAAYLRALSLSPNH---AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273
Query: 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274
Y N A A + AEA ++ + P ++ + + L QGN +A+ ++KAL
Sbjct: 274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL-YRKAL 332
Query: 275 QLDPNNEAVKENIRMAEQKLRE 296
++ P A N+ Q+ +
Sbjct: 333 EVFPEFAAAHSNLASVLQQQGK 354
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.5 bits (171), Expect = 7e-14
Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 11/146 (7%)
Query: 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN 210
A F A+ ++ + AY NL + K + A+ Y A++L N
Sbjct: 186 WLAIHHFEKAV-TLDPNFLDAYI--NLGNVLKEAR-------IFDRAVAAYLRALSLSPN 235
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270
+AV + N A Y + A+ ++I++ P++ AY L A +G+ +A + +
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDC-Y 294
Query: 271 KKALQLDPNNEAVKENIRMAEQKLRE 296
AL+L P + N+ +++
Sbjct: 295 NTALRLCPTHADSLNNLANIKREQGN 320
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.1 bits (170), Expect = 1e-13
Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 157 FHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYS 216
+A + + + N + +A+ LY A+ + A +S
Sbjct: 287 VAEAEDCYNTALRLCPTHAD---SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN 261
N A+ Q + EA+ ++I I P ++ AYS +G +
Sbjct: 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.2 bits (160), Expect = 1e-12
Identities = 14/80 (17%), Positives = 28/80 (35%)
Query: 184 QGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243
+R Q+ + A +N ++ + Q + + +I +P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 244 NYSKAYSRLGLAYYAQGNYN 263
++AYS LG Y +G
Sbjct: 65 LLAEAYSNLGNVYKERGQLQ 84
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.8 bits (146), Expect = 1e-10
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
A Q + A R C++ +P+ + L ++ + + A++
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHF-STLAIKQ 62
Query: 277 DPNNEAVKENI 287
+P N+
Sbjct: 63 NPLLAEAYSNL 73
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (124), Expect = 5e-08
Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 1/163 (0%)
Query: 134 FHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ 193
H R PD D + A D ++ + +L + GN + +
Sbjct: 91 RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR 150
Query: 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253
+A Y AI N AV +SN + + A+ K++ +DPN+ AY LG
Sbjct: 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210
Query: 254 LAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296
++ A+ + +AL L PN+ V N+ +
Sbjct: 211 NVLKEARIFDRAVAA-YLRALSLSPNHAVVHGNLACVYYEQGL 252
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.001
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 252 LGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296
L Y G++ A + + +P+N V + + R
Sbjct: 5 LAHREYQAGDFEAAERH-CMQLWRQEPDNTGVLLLLSSIHFQCRR 48
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 75.0 bits (183), Expect = 1e-16
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 16/140 (11%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN---------------NAVYYSNRAA 220
A I K +G + +Y A+ Y ++ + N A
Sbjct: 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72
Query: 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
Y ++ +Y +AV C K++ +D K R G A + A F+K L+++P N
Sbjct: 73 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD-FEKVLEVNPQN 131
Query: 281 EAVKENIRMAEQKLREERQR 300
+A + I M ++K +E +R
Sbjct: 132 KAARLQIFMCQKKAKEHNER 151
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.6 bits (166), Expect = 3e-14
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFA----------------IALCGNNAVYYSNRA 219
++E K GN +SQ + AI+ Y+ L N
Sbjct: 25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 84
Query: 220 AAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279
A ++ + AV CL++++IDP+ +KA R + Y+ A+ KKA ++ P
Sbjct: 85 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD-LKKAQEIAPE 143
Query: 280 NEAVKENIRMAEQKLREERQR 300
++A++ + +QK++ ++ +
Sbjct: 144 DKAIQAELLKVKQKIKAQKDK 164
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.1 bits (105), Expect = 3e-06
Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 6/128 (4%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYN------QKNLAEIFKCQGNRVMQSQQYSDAIELYS 202
+ A + + + +E S A A + Q G ++ + A++
Sbjct: 42 NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCL 101
Query: 203 FAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNY 262
A+ + +N RA + + +Y +A+ D K+ +I P + L
Sbjct: 102 EALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 161
Query: 263 NDAIEKGF 270
D + +
Sbjct: 162 KDKEKAAY 169
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 66.2 bits (160), Expect = 1e-13
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 17/140 (12%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVY----------------YSNRA 219
A K +GN + + ++AI Y A+ + + N A
Sbjct: 15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 74
Query: 220 AAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279
Y + Y +A+ K + ID N KA +LG+A G +A E KA L+PN
Sbjct: 75 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN-LYKAASLNPN 133
Query: 280 NEAVKENIRMAEQKLREERQ 299
N ++ + + KL+E R+
Sbjct: 134 NLDIRNSYELCVNKLKEARK 153
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.3 bits (155), Expect = 6e-13
Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE K Q N +++ Y +AI+ YS AI L +NA+YY NR+ AY + Y A+ D +
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+I++D Y K Y R + A G + A+ ++ +++ P+++ K + + ++++
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRD-YETVVKVKPHDKDAKMKYQECNKIVKQK 128
Query: 298 R 298
Sbjct: 129 A 129
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.5 bits (153), Expect = 1e-12
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 16/138 (11%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFA---------------IALCGNNAVYYSNRAAAY 222
+ I K +G + +Y A+ Y + N A +
Sbjct: 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72
Query: 223 TQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282
++ ++ A+ C K++++D N K SR G A+ A ++ A F+K LQL PNN+A
Sbjct: 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARAD-FQKVLQLYPNNKA 131
Query: 283 VKENIRMAEQKLREERQR 300
K + + +Q++R + R
Sbjct: 132 AKTQLAVCQQRIRRQLAR 149
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.6 bits (148), Expect = 2e-12
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
K +GN+ + DA++ YS AI L +N V YSNR+AAY + Y +A D K
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293
++D+ P++ K YSR A + +A +++ L+ + NN +KE ++ E +
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRT-YEEGLKHEANNPQLKEGLQNMEAR 117
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 64.3 bits (156), Expect = 3e-12
Identities = 19/116 (16%), Positives = 33/116 (28%)
Query: 184 QGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243
Q + Q A+EL AI +A S+ + A ++SI + P
Sbjct: 2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61
Query: 244 NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQ 299
Y S+L A D + + + ++ Q
Sbjct: 62 EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQ 117
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.3 bits (150), Expect = 2e-11
Identities = 13/128 (10%), Positives = 33/128 (25%), Gaps = 1/128 (0%)
Query: 161 INEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAA 220
++ SG +N+ + + Y +
Sbjct: 191 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVE 250
Query: 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
T + E+ ++ + + L A + ++ F +DP
Sbjct: 251 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY-FSTLKAVDPMR 309
Query: 281 EAVKENIR 288
A +++R
Sbjct: 310 AAYLDDLR 317
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.2 bits (116), Expect = 5e-07
Identities = 7/135 (5%), Positives = 28/135 (20%), Gaps = 3/135 (2%)
Query: 125 GQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQ 184
+ + + + Q + + + + +
Sbjct: 192 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHR---WLLGRAEPLFRCELS 248
Query: 185 GNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN 244
+ Q ++ + + A + E ++ +DP
Sbjct: 249 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308
Query: 245 YSKAYSRLGLAYYAQ 259
+ L + +
Sbjct: 309 RAAYLDDLRSKFLLE 323
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.4 bits (93), Expect = 3e-04
Identities = 9/131 (6%), Positives = 42/131 (32%), Gaps = 4/131 (3%)
Query: 172 YNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ--YA 229
++ + + + + + + + + + + + +R +++ + +A
Sbjct: 67 NCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 126
Query: 230 EAVRDCLKSIDIDPN-YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288
+ C + ++ D + R +A A + + + + +N +
Sbjct: 127 RELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF-TDSLITRNFSNYSSWHYRS 185
Query: 289 MAEQKLREERQ 299
+L +
Sbjct: 186 CLLPQLHPQPD 196
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.7 bits (149), Expect = 5e-11
Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 3/131 (2%)
Query: 157 FHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYS 216
F + I ++ + N S Y+ ++ + V S
Sbjct: 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSS 124
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
+ + V+ S + LG + + A ++ A QL
Sbjct: 125 QLGIISNKQTHTSAIVKPQSSSCSYICQH--CLVHLGDIARYRNQTSQAESY-YRHAAQL 181
Query: 277 DPNNEAVKENI 287
P+N +
Sbjct: 182 VPSNGQPYNQL 192
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (124), Expect = 7e-08
Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 12/119 (10%)
Query: 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
+ + H +L +I + + Q S A Y A L
Sbjct: 135 HTSAIVKPQSSSC---SYICQHCLV--HLGDIARYRN-------QTSQAESYYRHAAQLV 182
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267
+N Y+ A + + + +SI + + A + L A D ++
Sbjct: 183 PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK 241
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (122), Expect = 1e-07
Identities = 12/147 (8%), Positives = 35/147 (23%), Gaps = 15/147 (10%)
Query: 152 KASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN 211
++++ A ++ + AE++ + D Y +
Sbjct: 4 QSAQYLRQAE-VLKADMTDSKL--GPAEVWTSRQ-------ALQDL---YQKMLVTDLEY 50
Query: 212 AVYYSNRAAAY-TQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270
A+ + ++ K+ + A G Y +++
Sbjct: 51 ALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQE-L 109
Query: 271 KKALQLDPNNEAVKENIRMAEQKLREE 297
+D + + K
Sbjct: 110 CTVFNVDLPCRVKSSQLGIISNKQTHT 136
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (142), Expect = 6e-11
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 177 LAEIFKC--QGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRD 234
L E +G + + A++ +S ++ N YT + EA +
Sbjct: 2 LVEAISLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKA 58
Query: 235 CLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL 294
+SI+ D + + AY + G+ YY Y+ AI+ K+AL N+ + I + KL
Sbjct: 59 FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD-LKEALIQLRGNQLIDYKILGLQFKL 117
Query: 295 RE 296
Sbjct: 118 FA 119
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (128), Expect = 4e-09
Identities = 21/165 (12%), Positives = 54/165 (32%), Gaps = 32/165 (19%)
Query: 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN 210
A F + ++ + N+ ++ N ++A + ++ +I +
Sbjct: 22 KGALDAF----SAVQDPHSRICF--NIGCMYTILKN-------MTEAEKAFTRSINRDKH 68
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS----------------KAYSRLGL 254
AV Y R Y Q +Y A++D +++ + +
Sbjct: 69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 128
Query: 255 AYYAQGNYNDAIEKGFKKALQL--DPNNEAVKENIRMAEQKLREE 297
Y + + A E+ A + +P + + + + ++ E
Sbjct: 129 MYAKKEEWKKAEEQ-LALATSMKSEPRHSKIDKAMECVWKQKLYE 172
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (101), Expect = 1e-05
Identities = 15/146 (10%), Positives = 37/146 (25%), Gaps = 14/146 (9%)
Query: 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN 210
++ + G Y + K + + + I+ +
Sbjct: 60 TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDL-KEALIQLRGNQLIDYKILGLQFKLF 118
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270
N A Y + ++ +A + + + A+E
Sbjct: 119 ACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PRHSKIDKAMEC-V 165
Query: 271 KKALQLDPNNEAVKENIRMAEQKLRE 296
K +P V R E+++ +
Sbjct: 166 WKQKLYEPVVIPVGRLFRPNERQVAQ 191
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.2 bits (127), Expect = 2e-09
Identities = 14/117 (11%), Positives = 37/117 (31%), Gaps = 6/117 (5%)
Query: 186 NRVMQSQQYSDAIELYSFAIALCGNNA---VYYSNRAAAYTQIHQYAEAVRDCLKSIDID 242
N ++ + + + A + Y+ + + + +
Sbjct: 7 NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG 66
Query: 243 PN--YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
L + Y Y A++ + LQ +P N KE R+ ++ ++++
Sbjct: 67 SKEEQRDYVFYLAVGNYRLKEYEKALKY-VRGLLQTEPQNNQAKELERLIDKAMKKD 122
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 54.8 bits (130), Expect = 4e-09
Identities = 13/118 (11%), Positives = 37/118 (31%), Gaps = 1/118 (0%)
Query: 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSI 239
++ + + +Q + ++ + ++ D +
Sbjct: 143 LWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNT 202
Query: 240 DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+ + S+ LG Y + G+ + A FK A+ + +N + L ++
Sbjct: 203 SLAEHLSETNFYLGKYYLSLGDLDSATAL-FKLAVANNVHNFVEHRYALLELSLLGQD 259
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 42.5 bits (98), Expect = 4e-05
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 1/128 (0%)
Query: 173 NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAV 232
A++ +G + A +S A+A+ + ++ TQ + A
Sbjct: 32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 91
Query: 233 RDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQ 292
+++DP Y+ A+ G+A Y G A + Q DPN+ + +AEQ
Sbjct: 92 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD-LLAFYQDDPNDPFRSLWLYLAEQ 150
Query: 293 KLREERQR 300
KL E++ +
Sbjct: 151 KLDEKQAK 158
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 41.7 bits (96), Expect = 8e-05
Identities = 10/138 (7%), Positives = 34/138 (24%), Gaps = 2/138 (1%)
Query: 124 FGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKC 183
L F+ + + A +++ + ++ I +
Sbjct: 121 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 180
Query: 184 QGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243
+ + + +L + + Y + A ++ +
Sbjct: 181 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240
Query: 244 NYSKAY--SRLGLAYYAQ 259
+ + + L L+ Q
Sbjct: 241 HNFVEHRYALLELSLLGQ 258
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (131), Expect = 5e-09
Identities = 22/138 (15%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
Query: 157 FHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYS 216
F + + + ++ G S +Y A++ ++ A+++ N+ + ++
Sbjct: 152 FLEVKELFLAAVRLDPTSID-PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 210
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
A +Q EAV +++++ P Y ++ LG++ G + +A+E F +AL +
Sbjct: 211 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH-FLEALNM 269
Query: 277 DPNNEAVKENIRMAEQKL 294
+ + + +
Sbjct: 270 QRKSRGPRGEGGAMSENI 287
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 1e-06
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275
Q AV ++ DP + +A+ LG AI ++ L+
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISA-LRRCLE 81
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 2e-06
Identities = 25/167 (14%), Positives = 48/167 (28%), Gaps = 12/167 (7%)
Query: 120 KDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAE 179
D LF + D + + + ++ A + N
Sbjct: 148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL 207
Query: 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSI 239
++ G + Q +A+ Y A+ L N + + + EAV L+++
Sbjct: 208 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 267
Query: 240 DIDPN-----------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275
++ +S L LA G DA + L
Sbjct: 268 NMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS-DAYGAADARDLS 313
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 6e-06
Identities = 16/117 (13%), Positives = 42/117 (35%), Gaps = 2/117 (1%)
Query: 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRD 234
++ + F+ +G R +Q +A+ L+ A+ + + + Q A+
Sbjct: 17 RDHPQPFE-EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISA 75
Query: 235 CLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291
+ +++ P+ A L +++ + A E + L+ P +
Sbjct: 76 LRRCLELKPDNQTALMALAVSFTNESLQRQACEI-LRDWLRYTPAYAHLVTPAEEGA 131
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 0.002
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 252 LGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGW 303
GL +G+ +A+ F+ A+Q DP + + + + + +E
Sbjct: 25 EGLRRLQEGDLPNAVLL-FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISA 75
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.1 bits (121), Expect = 8e-08
Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 5/102 (4%)
Query: 205 IALCGNNAVYYSNRA--AAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNY 262
++L + V Y +RA A + Q + + I + Y
Sbjct: 2 VSLDSPSYVLYRDRAEWADIDPVPQNDGP--NPVVQIIYSDKFRDVYDYFRAVLQRDERS 59
Query: 263 NDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWD 304
A + + A++L+ N V R+ + L+++
Sbjct: 60 ERAFKL-TRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNY 100
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (113), Expect = 9e-07
Identities = 17/149 (11%), Positives = 50/149 (33%), Gaps = 8/149 (5%)
Query: 155 RIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVY 214
+ H+ +N + Q +++ + V + S +E + + N
Sbjct: 92 KDLHEEMNYITA---IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 148
Query: 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYND-----AIEKG 269
+ +R + + ++ + + D + +++ YND +
Sbjct: 149 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 208
Query: 270 FKKALQLDPNNEAVKENIRMAEQKLREER 298
+ ++L P+NE+ ++ Q +
Sbjct: 209 TLEMIKLVPHNESAWNYLKGILQDRGLSK 237
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (104), Expect = 1e-05
Identities = 11/100 (11%), Positives = 27/100 (27%)
Query: 196 DAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255
+ I Y A + + A + +I+++ + +
Sbjct: 27 NDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVL 86
Query: 256 YYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLR 295
+ ++ P N V + R+ + LR
Sbjct: 87 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR 126
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 5e-05
Identities = 18/118 (15%), Positives = 39/118 (33%), Gaps = 3/118 (2%)
Query: 188 VMQSQQYSD-AIELYSFAIALCGNNAVYYSNRAAAYTQIHQ-YAEAVRDCLKSIDIDPNY 245
V+Q + S+ A +L AI L N + R + + E + I+ P
Sbjct: 52 VLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN 111
Query: 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGW 303
+ + + + + +E L D N ++ + Q+ + +
Sbjct: 112 YQVWHHRRVLVEWLRDPSQELEF-IADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 168
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 49.5 bits (116), Expect = 3e-07
Identities = 19/140 (13%), Positives = 41/140 (29%), Gaps = 11/140 (7%)
Query: 170 HAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----AVYYSNRAAAYTQI 225
Y+ ++ K + + + A N + N A A +
Sbjct: 205 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 264
Query: 226 HQYAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279
++ A + + + ++ L Y+ G +DA AL+L
Sbjct: 265 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV-LLDALKLANR 323
Query: 280 NEAVKENIRMAEQKLREERQ 299
+ + E ++ RQ
Sbjct: 324 TGFISHFVIEGEAMAQQLRQ 343
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 45.3 bits (105), Expect = 8e-06
Identities = 14/129 (10%), Positives = 37/129 (28%), Gaps = 6/129 (4%)
Query: 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN-----YSKAYSRLGLAYYAQGNYNDA 265
+A + + RA EA R +++ P A S LG + +G +
Sbjct: 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRS 70
Query: 266 IEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRS 325
+ ++ Q+ ++ + Q+ + + + + +
Sbjct: 71 LAL-MQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 129
Query: 326 HGTPPSFTM 334
+
Sbjct: 130 PMHEFLVRI 138
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 46.7 bits (109), Expect = 7e-07
Identities = 21/157 (13%), Positives = 44/157 (28%), Gaps = 31/157 (19%)
Query: 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL------------CGNNAVYYS 216
AY + R + + +Y +A A+ + G +A ++
Sbjct: 7 VGAYLALS-------DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHA 59
Query: 217 NRAAAYTQI-----------HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDA 265
A A + R + D + A LA G +A
Sbjct: 60 GLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEA 119
Query: 266 IEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTG 302
+ + FKK +++ + + + + G
Sbjct: 120 MPE-FKKVVEMIEERKGETPGKERMMEVAIDRIAQLG 155
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.7 bits (107), Expect = 4e-06
Identities = 29/174 (16%), Positives = 52/174 (29%), Gaps = 19/174 (10%)
Query: 134 FHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ 193
F +D KA + A + + A + K F + Q
Sbjct: 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC----FIKCADLKALDGQ 173
Query: 194 YSDAIELYSFAIALCGNNAV-------YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS 246
Y +A ++YS I N + Y+ + A R + DPN++
Sbjct: 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233
Query: 247 -----KAYSRLGLAYYAQ--GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293
L A ++ K F ++LD + I+ + Q+
Sbjct: 234 DSRESNFLKSLIDAVNEGDSEQLSEHC-KEFDNFMRLDKWKITILNKIKESIQQ 286
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.5 bits (95), Expect = 5e-05
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 252 LGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
L + Y G Y+ A ++ + + NN+ V M E K+++E
Sbjct: 79 LTIGCYKLGEYSMA-KRYVDTLFEHERNNKQVGALKSMVEDKIQKE 123
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.4 bits (78), Expect = 0.003
Identities = 11/85 (12%), Positives = 25/85 (29%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
L ++ + + A+ + + A Q +A+
Sbjct: 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQG 260
K +++DP + +A L Y
Sbjct: 70 KKLLELDPEHQRANGNLKYFEYIMA 94
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 433 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.91 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.88 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.87 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.86 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.83 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.78 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.75 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.74 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.72 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.7 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.7 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.68 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.67 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.66 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.65 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.64 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.64 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.63 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.61 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.61 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.58 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.53 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.51 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.5 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.5 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.5 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.48 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.48 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.47 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.47 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.47 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.43 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.42 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.35 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.3 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.29 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.27 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.13 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.04 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.02 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.97 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.88 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.8 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.76 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.63 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.39 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.28 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.05 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 88.66 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 86.93 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 84.82 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 80.88 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=7e-28 Score=229.89 Aligned_cols=224 Identities=17% Similarity=0.161 Sum_probs=197.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.+....+...+.+.+...|.. +.++..+|.++...|++++|+..+.+++..+|++..++..+|.++...|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 217 (388)
T d1w3ba_ 148 LGRLEEAKACYLKAIETQPNF----------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 217 (388)
T ss_dssp TSCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred cchhhhhHHHHHHhhccCcch----------hHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccc
Confidence 366777888888888887776 8889999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..+++++.++|..+..+..+|.++...|++++|+. .|+++++++|+++.++..+|.++...|++.+|...+..
T Consensus 218 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 296 (388)
T d1w3ba_ 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID-TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999888776
Q ss_pred cCC-Cccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 307 TSS-SHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 307 ~~~-~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
+.. .+.... +..+...|++++|+..| +++.+| +++.+++.+| .++..+|++++|+.+|+++++++|
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~l~P 370 (388)
T d1w3ba_ 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-----EFAAAHSNLA-SVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-----TCHHHHHHHH-HHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred hhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCC
Confidence 552 222221 56688889999999999 999999 9999999999 999999999999999999999999
Q ss_pred Cc-ccccccc
Q 013948 379 GI-RIGGNIN 387 (433)
Q Consensus 379 ~~-~~~~~~~ 387 (433)
++ .++.+++
T Consensus 371 ~~~~a~~~lg 380 (388)
T d1w3ba_ 371 TFADAYSNMG 380 (388)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 98 5555544
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5.2e-25 Score=209.70 Aligned_cols=243 Identities=19% Similarity=0.181 Sum_probs=199.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------------------
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL------------------- 207 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------------------- 207 (433)
.|++++|+..|+++++.+|.+ +.++..+|.++...|++++|+..+.+++..
T Consensus 46 ~~~~~~A~~~~~~al~~~p~~----------~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (388)
T d1w3ba_ 46 CRRLDRSAHFSTLAIKQNPLL----------AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccc
Confidence 466777777777777776665 666777777777777777777666665544
Q ss_pred -------------------------------------------------cCCCHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 013948 208 -------------------------------------------------CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKS 238 (433)
Q Consensus 208 -------------------------------------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 238 (433)
.|+++.++..+|.++...|++++|+..++++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 195 (388)
T d1w3ba_ 116 DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp CSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHH
Confidence 4556677889999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccC-CCccchh--
Q 013948 239 IDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTS-SSHYSQE-- 315 (433)
Q Consensus 239 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~-- 315 (433)
++++|+++.++..+|.++...|++++|+. .+++++..+|.....+..+|.++...|++++|...++++. ..|....
T Consensus 196 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 274 (388)
T d1w3ba_ 196 VTLDPNFLDAYINLGNVLKEARIFDRAVA-AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCTTHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHhCcccHHHHHHHhhhhhccccHHHHHH-HHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999999999 9999999999999999999999999999999999887765 3333332
Q ss_pred ---hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccc
Q 013948 316 ---SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLN 389 (433)
Q Consensus 316 ---~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~ 389 (433)
+..+...|++++|+..+ ++...| ..+..+..+| .++...|++++|+..|+++++++|++ .++.+++..
T Consensus 275 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 348 (388)
T d1w3ba_ 275 CNLANALKEKGSVAEAEDCYNTALRLCP-----THADSLNNLA-NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHCT-----TCHHHHHHHH-HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhccCC-----ccchhhhHHH-HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 56677889999999999 999999 9999999999 99999999999999999999999999 555544433
Q ss_pred cc-cCCcHHHHHHHHHHH
Q 013948 390 FG-ENMPEDITGALRSMM 406 (433)
Q Consensus 390 l~-~~~~~~~~~a~~~~~ 406 (433)
+. ..+.++....++...
T Consensus 349 ~~~~g~~~~A~~~~~~al 366 (388)
T d1w3ba_ 349 LQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHTTTCCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 32 345555444444443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=7.7e-24 Score=198.54 Aligned_cols=217 Identities=14% Similarity=0.091 Sum_probs=162.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|+++++.+|.+ +.+|+.+|.++...|++++|+..|.++++++|++...|..+|.++...|
T Consensus 32 ~g~~~~A~~~~~~al~~~P~~----------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 32 EGDLPNAVLLFEAAVQQDPKH----------MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 101 (323)
T ss_dssp TTCHHHHHHHHHHHHHSCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence 599999999999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHH---------------HHHHHHHHHcCCHHHHHHHHHHHHHhhCCC--CHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAY---------------SRLGLAYYAQGNYNDAIEKGFKKALQLDPN--NEAVKENIRM 289 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~---------------~~lg~~~~~~g~~~~A~~~~~~~al~~~p~--~~~~~~~l~~ 289 (433)
++++|+..+++++..+|.....+ ......+...+.+.+|+. .|.++++++|+ ++.++..+|.
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKE-LFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHH-HHHHHHHHSTTSCCHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHH-HHHHHHHHhhcccccccchhhHH
Confidence 99999999998888776532111 011112233344555555 55555555554 2444555555
Q ss_pred HHHHHHHHHHhcccccccCC-Cccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCC
Q 013948 290 AEQKLREERQRTGWDQTTSS-SHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQP 361 (433)
Q Consensus 290 ~~~~~~~~~~a~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g 361 (433)
++...|++++|...+..+.. .|.... +..|...|++++|+..| ++..+| +++.+++++| .++..+|
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg-~~~~~~g 254 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-----GYIRSRYNLG-ISCINLG 254 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHH-HHHHHHT
T ss_pred HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhh-----ccHHHHHHHH-HHHHHCC
Confidence 55555555555555444331 111111 33445555555666556 788899 9999999999 9999999
Q ss_pred ChhhHHHHHhhhcCCCCCc
Q 013948 362 SQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 362 ~~~~A~~~~~~al~l~P~~ 380 (433)
++++|+..|++|++++|++
T Consensus 255 ~~~~A~~~~~~al~l~p~~ 273 (323)
T d1fcha_ 255 AHREAVEHFLEALNMQRKS 273 (323)
T ss_dssp CHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCcC
Confidence 9999999999999999998
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=9.6e-24 Score=191.43 Aligned_cols=221 Identities=14% Similarity=0.089 Sum_probs=179.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
..+.+.++..+++++...+. .++..+.+++.+|.++...|++++|+..|++++.++|+++.+|+++|.++..+|
T Consensus 12 ~~~~e~al~~~~e~l~~~~~------~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g 85 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRAL------TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 85 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCC------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHhhhc------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHH
Confidence 56888888888888765332 234568999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|+++++++|+++.+++.+|.++..+|++++|+. .|+++++++|++......++.++...+...........
T Consensus 86 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (259)
T d1xnfa_ 86 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD-DLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 164 (259)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHH-HHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999888888888777665444333222
Q ss_pred cC---CCccchh-hhhhhcC----CCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 307 TS---SSHYSQE-SNQSTGG----FRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 307 ~~---~~~~~~~-~~~~~~~----~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
.. ..+.... ...+... +.++.+...+ .....| ....+++.+| .++..+|++++|+.+|+++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 165 FEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE-----HLSETNFYLG-KYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH-----HHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-----ccHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHc
Confidence 21 1111111 1122111 2222222223 555667 8889999999 9999999999999999999999
Q ss_pred CCCc
Q 013948 377 EPGI 380 (433)
Q Consensus 377 ~P~~ 380 (433)
+|++
T Consensus 239 ~p~~ 242 (259)
T d1xnfa_ 239 NVHN 242 (259)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 9987
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6.9e-22 Score=185.02 Aligned_cols=229 Identities=12% Similarity=0.100 Sum_probs=166.6
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
..+++++|+.+|+++++++|++++++...+.++...+.+..+....... +.+.+.
T Consensus 31 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~a--------------------l~~~p~----- 85 (323)
T d1fcha_ 31 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC--------------------LELKPD----- 85 (323)
T ss_dssp HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------HHHCTT-----
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhh--------------------hccccc-----
Confidence 4456999999999999999999977666666665555555554421110 011110
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHH------HHHHHHH
Q 013948 114 DSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEI------FKCQGNR 187 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~------~~~lg~~ 187 (433)
....+..+...+.. .|++++|++.+++++...|......... ..... .......
T Consensus 86 ------~~~~~~~la~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 145 (323)
T d1fcha_ 86 ------NQTALMALAVSFTN-------------ESLQRQACEILRDWLRYTPAYAHLVTPA-EEGAGGAGLGPSKRILGS 145 (323)
T ss_dssp ------CHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHTSTTTGGGCC----------------CTTHH
T ss_pred ------cccccccccccccc-------------cccccccccchhhHHHhccchHHHHHhh-hhhhhhcccccchhhHHH
Confidence 01112222222222 5788888888888888877653221110 00111 1112223
Q ss_pred HHHccCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 013948 188 VMQSQQYSDAIELYSFAIALCGNN--AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDA 265 (433)
Q Consensus 188 ~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 265 (433)
+...+.+.+|+..|.+++.++|+. +.++..+|.++...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|
T Consensus 146 ~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 225 (323)
T d1fcha_ 146 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 225 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhH
Confidence 445677888888888888888864 678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 266 IEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 266 ~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
+. +|+++++++|+++.++..+|.++..+|++++|...+.++.
T Consensus 226 ~~-~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 267 (323)
T d1fcha_ 226 VA-AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 267 (323)
T ss_dssp HH-HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99 9999999999999999999999999999999988877543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=7.5e-22 Score=184.88 Aligned_cols=194 Identities=10% Similarity=0.050 Sum_probs=171.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ-QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.+.+++|+++++++|.++|.+ ..+|+.+|.++...| ++++|+..++++++++|++..+|+++|.++..+
T Consensus 56 ~e~~~~Al~~~~~ai~lnP~~----------~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l 125 (315)
T d2h6fa1 56 DERSERAFKLTRDAIELNAAN----------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL 125 (315)
T ss_dssp TCCCHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHCCCC----------hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhh
Confidence 578999999999999999998 999999999999876 599999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
|++++|+..+.++++++|++..+|..+|.++..+|++++|+. +++++++++|.+..+|.+++.++..++......
T Consensus 126 ~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~-~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~---- 200 (315)
T d2h6fa1 126 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQ-YVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA---- 200 (315)
T ss_dssp TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH----
T ss_pred ccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHCCccHHHHHHHHHHHHHccccchhh----
Confidence 999999999999999999999999999999999999999999 999999999999999999999977655421110
Q ss_pred ccCCCccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 306 TTSSSHYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.+++|+..+ ++..+| ++..+|..++ .++...| .+++...++++++++|+.
T Consensus 201 ------------------~~~~ai~~~~~al~~~P-----~~~~~~~~l~-~ll~~~~-~~~~~~~~~~~~~l~~~~ 252 (315)
T d2h6fa1 201 ------------------VLEREVQYTLEMIKLVP-----HNESAWNYLK-GILQDRG-LSKYPNLLNQLLDLQPSH 252 (315)
T ss_dssp ------------------HHHHHHHHHHHHHHHST-----TCHHHHHHHH-HHHTTTC-GGGCHHHHHHHHHHTTTC
T ss_pred ------------------hhHHhHHHHHHHHHhCC-----CchHHHHHHH-HHHHhcC-hHHHHHHHHHHHHhCCCc
Confidence 111222333 788999 9999999999 7766554 688999999999999986
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.4e-21 Score=182.94 Aligned_cols=200 Identities=10% Similarity=0.038 Sum_probs=170.9
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-HHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ-YAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
|...+++..+|.++...+.+++|+..++++|+++|++..+|+++|.++..+|+ +++|+.+++++++++|++..+|..+|
T Consensus 40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~ 119 (315)
T d2h6fa1 40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence 44588999999999999999999999999999999999999999999999874 99999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCccc
Q 013948 254 LAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFT 333 (433)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~a 333 (433)
.++..+|++++|+. .+.++++++|++..+|.++|.++..+|++++|..++.. +
T Consensus 120 ~~~~~l~~~~eAl~-~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~--------------------------a 172 (315)
T d2h6fa1 120 VLVEWLRDPSQELE-FIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ--------------------------L 172 (315)
T ss_dssp HHHHHHTCCTTHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH--------------------------H
T ss_pred HHHHhhccHHHHHH-HHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHH--------------------------H
Confidence 99999999999999 99999999999999999999999999887776665442 7
Q ss_pred ccCCCCCCCccHHHHHHHHhhcccccCCC------hhhHHHHHhhhcCCCCCc-ccccccccccccCCcHHHHHHHHHHH
Q 013948 334 MPFNTNALPTDIASMLMNMASNMPQAQPS------QSRQGEDSNVSGSDEPGI-RIGGNINLNFGENMPEDITGALRSMM 406 (433)
Q Consensus 334 l~~~p~~~~~~~~~a~~~la~~~~~~~g~------~~~A~~~~~~al~l~P~~-~~~~~~~~~l~~~~~~~~~~a~~~~~ 406 (433)
+.++| .+..+|.++| .++...+. +++|+..+.++++++|++ ..+.++...+.....++....+....
T Consensus 173 l~~~p-----~n~~a~~~r~-~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 173 LKEDV-----RNNSVWNQRY-FVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLL 246 (315)
T ss_dssp HHHCT-----TCHHHHHHHH-HHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHH
T ss_pred HHHCC-----ccHHHHHHHH-HHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 88999 9999999999 88777666 578999999999999999 55444443332222233333444444
Q ss_pred h
Q 013948 407 E 407 (433)
Q Consensus 407 ~ 407 (433)
+
T Consensus 247 ~ 247 (315)
T d2h6fa1 247 D 247 (315)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.83 E-value=2e-21 Score=183.29 Aligned_cols=221 Identities=9% Similarity=-0.083 Sum_probs=173.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ--QYSDAIELYSFAIALCGNNAVYY-SNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~ 223 (433)
.|.+++|+.++++++..+|++ ..+|+.+|.++...+ ++++|+..+.+++..+|.+..++ ..+|.++.
T Consensus 86 ~~~~~~al~~~~~~l~~~pk~----------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~ 155 (334)
T d1dcea1 86 AALVKAELGFLESCLRVNPKS----------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ 155 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCc----------HHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHH
Confidence 578999999999999999998 889999998887765 58999999999999999998876 56788999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGW 303 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 303 (433)
..+.+++|+..++++++++|++..+|+.+|.++..+|++++|+. .+++++++.|........+ ..++...++...
T Consensus 156 ~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~----~~l~~~~~a~~~ 230 (334)
T d1dcea1 156 AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP-QGRLPENVLLKELELVQNA----FFTDPNDQSAWF 230 (334)
T ss_dssp TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS-CCSSCHHHHHHHHHHHHHH----HHHCSSCSHHHH
T ss_pred hccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHH-HHHHhHHhHHHHHHHHHHH----HHhcchhHHHHH
Confidence 99999999999999999999999999999999999999988877 7777776666554433332 222222333322
Q ss_pred ccccC-CCcc-----chhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcC
Q 013948 304 DQTTS-SSHY-----SQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGS 375 (433)
Q Consensus 304 ~~~~~-~~~~-----~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~ 375 (433)
+.... ..+. ...+..+...+++.+|+..+ ++..+| +...++..+| .++..+|++++|+.+|+++++
T Consensus 231 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~-~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 231 YHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENK-----WCLLTIILLM-RALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHH-HHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc-----hHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHH
Confidence 22221 1111 11134445556667777777 899999 9999999999 999999999999999999999
Q ss_pred CCCCc-cccccccc
Q 013948 376 DEPGI-RIGGNINL 388 (433)
Q Consensus 376 l~P~~-~~~~~~~~ 388 (433)
+||.. ..+.++..
T Consensus 305 ldP~~~~y~~~L~~ 318 (334)
T d1dcea1 305 VDPMRAAYLDDLRS 318 (334)
T ss_dssp HCGGGHHHHHHHHH
T ss_pred HCcccHHHHHHHHH
Confidence 99987 55555543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=4e-18 Score=134.94 Aligned_cols=113 Identities=33% Similarity=0.517 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
..-+...|..++..|+|++|+..|+++|+.+|+++.+|+++|.++..+|++++|+..|.++++++|+++.+|+.+|.++.
T Consensus 3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
.+|++++|+. .|+++++++|+++.++..++.+.
T Consensus 83 ~~~~~~~A~~-~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 83 FLNRFEEAKR-TYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HTTCHHHHHH-HHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HccCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHh
Confidence 9999999999 99999999999999999998775
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=4.1e-17 Score=136.39 Aligned_cols=123 Identities=28% Similarity=0.522 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+..+...|+.++..|+|++|+.+|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.+|+.+|.++.
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH--HHHhc
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE--ERQRT 301 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--~~~a~ 301 (433)
.+|++++|+. +|++++.++|+++.++..++.+....+. ++++.
T Consensus 90 ~~g~~~eA~~-~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~ 134 (159)
T d1a17a_ 90 ALGKFRAALR-DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 134 (159)
T ss_dssp HTTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999998888655443 44443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=6.8e-19 Score=165.70 Aligned_cols=225 Identities=5% Similarity=-0.039 Sum_probs=189.8
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH----------HccCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM----------QSQQYSDAIELYSFAIALCGNNAVYYSNR 218 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~----------~~~~~~~A~~~~~~al~~~p~~~~~~~~l 218 (433)
..++|+.+++++|+.+|++ ..+|..++.++. ..|++.+|+.+|++++..+|++..+|+.+
T Consensus 44 ~~~~al~~~~~~l~~~P~~----------~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~ 113 (334)
T d1dcea1 44 LDESVLELTSQILGANPDF----------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 113 (334)
T ss_dssp CSHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCc----------HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHh
Confidence 3489999999999999998 777776666654 34558999999999999999999999999
Q ss_pred HHHHHHhhc--HHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013948 219 AAAYTQIHQ--YAEAVRDCLKSIDIDPNYSKAY-SRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLR 295 (433)
Q Consensus 219 a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 295 (433)
|.++...++ +++|+..+.++++++|.+..++ ..+|.++...+.+++|+. +++++++++|.+..+|.++|.++..+|
T Consensus 114 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~-~~~~~i~~~p~~~~a~~~l~~~~~~~~ 192 (334)
T d1dcea1 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA-FTDSLITRNFSNYSSWHYRSCLLPQLH 192 (334)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH-HHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred hHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 999988875 8999999999999999998886 567889999999999999 999999999999999999999999999
Q ss_pred HHHHhcccccccCCCccchh--hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHh
Q 013948 296 EERQRTGWDQTTSSSHYSQE--SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSN 371 (433)
Q Consensus 296 ~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~ 371 (433)
++++|...+..+........ ...+...+..+++...+ ++..+| ....++..++ .++...|++.+|+..+.
T Consensus 193 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-----~~~~~~~~l~-~~~~~~~~~~~a~~~~~ 266 (334)
T d1dcea1 193 PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA-----EPLFRCELSV-EKSTVLQSELESCKELQ 266 (334)
T ss_dssp CCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC-----CCSSSCCCCH-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCc-----chhhHHHHHH-HHHHHHhhHHHHHHHHH
Confidence 99999888776653322211 23344557778888887 888899 7777888899 88899999999999999
Q ss_pred hhcCCCCCc-cccccccccc
Q 013948 372 VSGSDEPGI-RIGGNINLNF 390 (433)
Q Consensus 372 ~al~l~P~~-~~~~~~~~~l 390 (433)
+++..+|.+ ..+..++..+
T Consensus 267 ~~~~~~p~~~~~~~~l~~~~ 286 (334)
T d1dcea1 267 ELEPENKWCLLTIILLMRAL 286 (334)
T ss_dssp HHCTTCHHHHHHHHHHHHHH
T ss_pred HHHhhCchHHHHHHHHHHHH
Confidence 999999998 5554444444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=3.4e-16 Score=140.87 Aligned_cols=180 Identities=14% Similarity=-0.034 Sum_probs=142.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|+++|+++|++ +.+|+.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|
T Consensus 50 ~g~~~~A~~~~~~al~l~p~~----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 119 (259)
T d1xnfa_ 50 LGLRALARNDFSQALAIRPDM----------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 119 (259)
T ss_dssp TTCHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhhccCCCC----------HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 699999999999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHHHHHHHhccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK---ENIRMAEQKLREERQRTGW 303 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~---~~l~~~~~~~~~~~~a~~~ 303 (433)
++++|+..|+++++.+|.+......++.++...+..+.+.. .........+...... ..++. ....+....+...
T Consensus 120 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 197 (259)
T d1xnfa_ 120 RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEV-LKQHFEKSDKEQWGWNIVEFYLGN-ISEQTLMERLKAD 197 (259)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHSCCCSTHHHHHHHHTTS-SCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHH-HHHHhhccchhhhhhhHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888777766 5566555555543211 11111 1123334443333
Q ss_pred ccccCC-Cccc-----hhhhhhhcCCCCCCCCCcc--cccCCC
Q 013948 304 DQTTSS-SHYS-----QESNQSTGGFRSHGTPPSF--TMPFNT 338 (433)
Q Consensus 304 ~~~~~~-~~~~-----~~~~~~~~~~~~~~A~~~~--al~~~p 338 (433)
...... .+.. ..+.+|...|++++|+..| ++..+|
T Consensus 198 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 198 ATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 322221 1111 1256788889999999999 999999
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.2e-16 Score=136.18 Aligned_cols=148 Identities=21% Similarity=0.272 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+..++..|..+...|+|++|++.|.+ +.|.++.+|+++|.++..+|++++|+.+|+++++++|+++.+|+++|.++.
T Consensus 5 ~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 5 AISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 34566789999999999999999986 466788999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCC
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFN 337 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~ 337 (433)
.+|++++|+. .|++++...+.+. ...+.. +.+...
T Consensus 82 ~~g~~~~A~~-~~~kAl~~~~~n~------------------~~~~~~--------------------------~~~~~~ 116 (192)
T d1hh8a_ 82 QTEKYDLAIK-DLKEALIQLRGNQ------------------LIDYKI--------------------------LGLQFK 116 (192)
T ss_dssp HTTCHHHHHH-HHHHHHHTTTTCS------------------EEECGG--------------------------GTBCCE
T ss_pred hhccHHHHHH-HHHHHHHhCccCc------------------hHHHHH--------------------------hhhhcc
Confidence 9999999999 9999998776552 111111 023334
Q ss_pred CCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 338 TNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 338 p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
. ...++++++| .++..+|++++|+..+.+|+.+.|+
T Consensus 117 ~-----~~~e~~~n~a-~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 117 L-----FACEVLYNIA-FMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp E-----EHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred c-----chHHHHHHHH-HHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4 6778999999 9999999999999999999999988
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.70 E-value=3.9e-17 Score=141.47 Aligned_cols=118 Identities=28% Similarity=0.411 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+..+...|+.++..|+|++|+..|+++|.++|+++.+|+++|.||..+|++++|+.+|+++++++|+++.+|+++|.+|.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
.+|++++|+. +|+++++++|++...+..........+.
T Consensus 84 ~l~~~~~A~~-~~~~al~l~p~~~~~~~~~~~~~l~~~~ 121 (201)
T d2c2la1 84 EMESYDEAIA-NLQRAYSLAKEQRLNFGDDIPSALRIAK 121 (201)
T ss_dssp HTTCHHHHHH-HHHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred HCCCHHHHHH-HHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999988665444444434433333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=9.5e-16 Score=129.42 Aligned_cols=122 Identities=27% Similarity=0.417 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---------------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID 242 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 242 (433)
+..+...|..++..|+|++|+..|+++|...|.. ..++.++|.||.++|+|++|+.+++++|+++
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence 6778889999999999999999999999997754 3568899999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 013948 243 PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQR 300 (433)
Q Consensus 243 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 300 (433)
|+++.+++.+|.++..+|+|++|+. +|+++++++|+++.+...++.+...++.....
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~-~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARA-DFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 99999999999999999999998887776544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.67 E-value=1.4e-15 Score=125.98 Aligned_cols=119 Identities=29% Similarity=0.379 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----------------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
+..+...|..++..|+|.+|+..|++++...+.. ..++.++|.||.++|++++|+.++++++++
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~ 96 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 96 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence 6678889999999999999999999999876543 247889999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013948 242 DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297 (433)
Q Consensus 242 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 297 (433)
+|.+..+|+.+|.++..+|++++|+. +|+++++++|++..+...+..+..++++.
T Consensus 97 ~p~~~ka~~~~g~~~~~lg~~~~A~~-~~~~al~l~P~n~~~~~~l~~~~~kl~~~ 151 (153)
T d2fbna1 97 DKNNVKALYKLGVANMYFGFLEEAKE-NLYKAASLNPNNLDIRNSYELCVNKLKEA 151 (153)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHhHHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 99999999999999999999998877654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.66 E-value=1.6e-15 Score=127.90 Aligned_cols=123 Identities=24% Similarity=0.423 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------cCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIAL----------------CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
+..+...|..++..|+|.+|+..|++++.. +|....++.++|.|+.++|+|++|+..|.+++++
T Consensus 27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 106 (169)
T d1ihga1 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 106 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence 445667889999999999999999999864 4556778999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhc
Q 013948 242 DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRT 301 (433)
Q Consensus 242 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 301 (433)
+|+++.+|+++|.++..+|++++|+. .|+++++++|++..+...++.+...+....++.
T Consensus 107 ~p~~~~a~~~~g~~~~~l~~~~~A~~-~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~ 165 (169)
T d1ihga1 107 DPSNTKALYRRAQGWQGLKEYDQALA-DLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165 (169)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHhHHHHHHHccCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 999999999999999999999998887766543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.6e-15 Score=119.69 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=97.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|+++|..+|.+ +.+|..+|.++...|++++|+..|.+++.++|+++.+|+++|.++..+|
T Consensus 16 ~g~~~eAi~~~~~al~~~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 16 VGNIDDALQCYSEAIKLDPHN----------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCcc----------hhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 499999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
++++|+..|+++++++|+++.++..++.+..
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999999988753
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.65 E-value=5e-15 Score=124.68 Aligned_cols=121 Identities=26% Similarity=0.416 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---------------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID 242 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 242 (433)
+..+...|..++..|+|.+|+..|.+|+...|.. ..++.++|.||..+|++++|+.++++++.++
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 6778899999999999999999999999875543 3568899999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 013948 243 PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQ 299 (433)
Q Consensus 243 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 299 (433)
|++..+++++|.++..+|+|++|+. +|+++++++|+++.+...++.+...++...+
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~-~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e 150 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKG-DFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 150 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999 9999999999999999999999888876554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=4.8e-15 Score=127.63 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=109.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+|++|++.|.++ .|.+ +.+|+++|.++...|++++|+..|++|++++|+++.+|+++|.++.++|
T Consensus 18 ~~d~~~Al~~~~~i---~~~~----------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 18 KKDWKGALDAFSAV---QDPH----------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp TTCHHHHHHHHHTS---SSCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhc---CCCC----------HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence 58999999999864 2333 6789999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 227 QYAEAVRDCLKSIDIDPNY----------------SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~----------------~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
++++|+..|++++...|.+ ..+++++|.++..+|++++|++ .+.+++.+.|....
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~-~l~~A~~~~~~~~~ 155 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE-QLALATSMKSEPRH 155 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTTCCSGGG
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcCCCcch
Confidence 9999999999999875542 4788999999999999999999 99999999987543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=1.5e-15 Score=141.51 Aligned_cols=223 Identities=10% Similarity=-0.007 Sum_probs=179.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--------CHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN--------NAVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l 218 (433)
.|++++|+..|++++...+..+ ..+....++..++.++...|++..|+..+.+++.+.+. ...++..+
T Consensus 64 ~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~l 139 (366)
T d1hz4a_ 64 KGELTRSLALMQQTEQMARQHD----VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 139 (366)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHH
Confidence 5899999999999999887653 23455778889999999999999999999999876432 24577889
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC-------CHHHHHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDIDPN-----YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN-------NEAVKEN 286 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~-------~~~~~~~ 286 (433)
|.++...|+++.+...+.+++...+. ...++..++.++...+++.++.. .+.++..+.+. ...++..
T Consensus 140 a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~a~~~~~~~~~~~~~~~~~~~~ 218 (366)
T d1hz4a_ 140 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS-QLNRLENLLGNGKYHSDWISNANKV 218 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHhcccCchHHHHHHH
Confidence 99999999999999999999988664 35678889999999999999999 99888876432 2345677
Q ss_pred HHHHHHHHHHHHHhcccccccCCC-ccc----h-----hhhhhhcCCCCCCCCCcc--cc------cCCCCCCCccHHHH
Q 013948 287 IRMAEQKLREERQRTGWDQTTSSS-HYS----Q-----ESNQSTGGFRSHGTPPSF--TM------PFNTNALPTDIASM 348 (433)
Q Consensus 287 l~~~~~~~~~~~~a~~~~~~~~~~-~~~----~-----~~~~~~~~~~~~~A~~~~--al------~~~p~~~~~~~~~a 348 (433)
++.++...|+.+++..++..+... +.. . .+..+...|++++|+..+ ++ ...| ..+.+
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~ 293 (366)
T d1hz4a_ 219 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS-----DLNRN 293 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccCh-----HHHHH
Confidence 788888888888888877665422 111 1 145678889999999988 43 4556 88999
Q ss_pred HHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 349 LMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 349 ~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+..+| .++..+|++++|+..+++|+++.+..
T Consensus 294 ~~~la-~~~~~~g~~~~A~~~l~~Al~l~~~~ 324 (366)
T d1hz4a_ 294 LLLLN-QLYWQAGRKSDAQRVLLDALKLANRT 324 (366)
T ss_dssp HHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHCCCHHHHHHHHHHHHHHhhhc
Confidence 99999 99999999999999999999886554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.9e-15 Score=119.81 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=102.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---hhcHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHH
Q 013948 183 CQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ---IHQYAEAVRDCLKSIDIDPNY--SKAYSRLGLAYY 257 (433)
Q Consensus 183 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~ 257 (433)
.+++.+...+++++|.+.|++++.++|+++.+++++|.++.+ .+++.+|+..|++++..+|.+ ..+++++|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999999999986 456778999999999998765 469999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
.+|++++|+. +|+++++++|++..+...++.+..++++
T Consensus 84 ~~g~~~~A~~-~~~~aL~~~P~~~~A~~l~~~I~~~~~k 121 (122)
T d1nzna_ 84 RLKEYEKALK-YVRGLLQTEPQNNQAKELERLIDKAMKK 121 (122)
T ss_dssp HTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHH-HHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence 9999999999 9999999999999999999988776653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2e-16 Score=156.87 Aligned_cols=219 Identities=12% Similarity=0.047 Sum_probs=131.4
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCCCCCCCC
Q 013948 40 VARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPDSTGVS 119 (433)
Q Consensus 40 ~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 119 (433)
+|+++|++|++++|+.++++...+.++..-..++.+.+..+. .+|...........+ |
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~eaye~~i~------------~dp~~a~~~~~e~~L------w---- 61 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLV------------TDLEYALDKKVEQDL------W---- 61 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHHHHHHHH------------HCHHHHHHHTHHHHH------H----
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHHHHHHHH------------cChhhHHHHhHHHHH------H----
Confidence 799999999999999999999988888877777666442110 223222211100000 1
Q ss_pred hhHHHHHHHHHHHhhhhhhcCCCCCC-----------CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Q 013948 120 KDELFGQFFAALEKFHYFRTMPDGND-----------DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRV 188 (433)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~ 188 (433)
...+....+.+.............. ..+.|+.++..+++++..+|.+ ...+..+|..+
T Consensus 62 -~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~----------~~~~~~lg~~~ 130 (497)
T d1ya0a1 62 -NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPC----------RVKSSQLGIIS 130 (497)
T ss_dssp -HHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------
T ss_pred -HHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhh----------HHHHHHhHHHH
Confidence 0001111111111000000000000 1234455555555555555554 78899999999
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 013948 189 MQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 268 (433)
...|++++|+..+.+++..+| ..+++++|.++...|++++|+.+|++|++++|++..+|+.||.++...|++.+|+.
T Consensus 131 ~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~- 207 (497)
T d1ya0a1 131 NKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIF- 207 (497)
T ss_dssp ------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHH-
T ss_pred HhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHH-
Confidence 999999999999999998876 47889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013948 269 GFKKALQLDPNNEAVKENIRMAEQKL 294 (433)
Q Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (433)
+|.+++..+|..+.++.+|+.++.+.
T Consensus 208 ~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 208 YYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999887654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.6e-14 Score=120.36 Aligned_cols=111 Identities=19% Similarity=0.223 Sum_probs=102.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+|++|+..|+++++++|.+ +.+|+.+|.+++..|++++|+..|.++++++|++..+|+++|.++..+|
T Consensus 23 ~~~y~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 23 AKDYENAIKFYSQAIELNPSN----------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHhhhccccchhh----------hhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 699999999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--cCCHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA--QGNYNDAIE 267 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~ 267 (433)
++++|+.+|++++.++|+++.++..++.+... .+.+++|+.
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999988877543 344555554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.61 E-value=4.3e-15 Score=116.12 Aligned_cols=95 Identities=12% Similarity=0.056 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
..++.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|+++++++|+++.+|+.+|.+|..
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHH
Q 013948 259 QGNYNDAIEKGFKKAL 274 (433)
Q Consensus 259 ~g~~~~A~~~~~~~al 274 (433)
+|++++|++ ++++.|
T Consensus 97 ~g~~~~A~~-~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALA-SLRAWL 111 (112)
T ss_dssp HHHHHHHHH-HHHHHH
T ss_pred CCCHHHHHH-HHHHHh
Confidence 999999999 999876
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=1.8e-14 Score=132.38 Aligned_cols=201 Identities=12% Similarity=0.083 Sum_probs=154.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.++|++|+.+|.+++++.+... ..+..+..+..+|.+|...|++++|+..|++++.+.+.. ..++..+|.
T Consensus 50 ~~~~~~A~~~y~kA~~~~~~~~----~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 125 (290)
T d1qqea_ 50 RKELNLAGDSFLKAADYQKKAG----NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (290)
T ss_dssp TTCTHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHH
Confidence 7899999999999999976653 234457899999999999999999999999999986655 678889999
Q ss_pred HHHH-hhcHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH-------HHHHH
Q 013948 221 AYTQ-IHQYAEAVRDCLKSIDIDPN------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE-------AVKEN 286 (433)
Q Consensus 221 ~~~~-~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~-------~~~~~ 286 (433)
++.. .|++++|+.+|++++.+.+. ...++..+|.++..+|+|++|+. .|++++...+.+. ..+..
T Consensus 126 ~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (290)
T d1qqea_ 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD-IYSKLIKSSMGNRLSQWSLKDYFLK 204 (290)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHH-HHHHHHHhCccchhhhhhHHHHHHH
Confidence 8865 69999999999999987432 35678999999999999999999 9999999987764 45567
Q ss_pred HHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccc--cCCChh
Q 013948 287 IRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQ--AQPSQS 364 (433)
Q Consensus 287 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~--~~g~~~ 364 (433)
.+.++...+++..|...+.. ++..+|.............+. .++. ..++++
T Consensus 205 ~~~~~l~~~d~~~A~~~~~~--------------------------~~~~~~~~~~sre~~~l~~l~-~a~~~~d~e~~~ 257 (290)
T d1qqea_ 205 KGLCQLAATDAVAAARTLQE--------------------------GQSEDPNFADSRESNFLKSLI-DAVNEGDSEQLS 257 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHG--------------------------GGCC---------HHHHHHHH-HHHHTTCTTTHH
T ss_pred HHHHHHHhccHHHHHHHHHH--------------------------HHHhCCCccchHHHHHHHHHH-HHHHhcCHHHHH
Confidence 78888888888887776553 344455111112223344454 3333 356799
Q ss_pred hHHHHHhhhcCCCCC
Q 013948 365 RQGEDSNVSGSDEPG 379 (433)
Q Consensus 365 ~A~~~~~~al~l~P~ 379 (433)
+|+..|.++..+||-
T Consensus 258 eai~~y~~~~~lD~~ 272 (290)
T d1qqea_ 258 EHCKEFDNFMRLDKW 272 (290)
T ss_dssp HHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHhhcCHH
Confidence 999999999888764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.6e-14 Score=115.72 Aligned_cols=111 Identities=29% Similarity=0.434 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH-------HHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS-------KAYS 250 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~ 250 (433)
+..+..+|..++..|+|++|+.+|+++++++|+++.+++++|.+|..+|+|++|+..|+++++++|+++ .+++
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 667889999999999999999999999999999999999999999999999999999999999998764 4677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013948 251 RLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA 290 (433)
Q Consensus 251 ~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~ 290 (433)
.+|.++..++++++|+. +|++++..+|. ++....+..+
T Consensus 84 ~lg~~~~~~~~~~~A~~-~~~kal~~~~~-~~~~~~l~~~ 121 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIH-FYNKSLAEHRT-PDVLKKCQQA 121 (128)
T ss_dssp HHHHHHHHTTCHHHHHH-HHHHHHHHCCC-HHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHH-HHHHHHhcCCC-HHHHHHHHHH
Confidence 78888999999999999 99999998874 5555555444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.58 E-value=8.9e-15 Score=119.85 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=102.5
Q ss_pred HHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh----------hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 188 VMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI----------HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 188 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+.+.+.|++|+..|+++++++|+++.+++++|.++..+ +.+++|+..|+++++++|+++.+|+++|.+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 45667899999999999999999999999999999865 45689999999999999999999999999998
Q ss_pred HcCC-----------HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhc
Q 013948 258 AQGN-----------YNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRT 301 (433)
Q Consensus 258 ~~g~-----------~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 301 (433)
.+|+ |++|+. +|+++++++|++..++..|+.+....+.+.++.
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~-~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~ 140 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQ-FFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY 140 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhh-hhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8764 799999 999999999999999999999988887777653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3e-13 Score=113.74 Aligned_cols=121 Identities=18% Similarity=0.125 Sum_probs=105.8
Q ss_pred cchHHHHHHHHHHHHHHHhhcccccc-----chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAY-----NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAA 221 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~-----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 221 (433)
.|+|++|+..|+++|+..|....... .......++.++|.+++..|+|++|+..++++|.++|+++.+++.+|.|
T Consensus 26 ~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 105 (170)
T d1p5qa1 26 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA 105 (170)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHH
Confidence 59999999999999999886532211 1233456778899999999999999999999999999999999999999
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 013948 222 YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267 (433)
Q Consensus 222 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 267 (433)
+..+|++++|+.+|+++++++|+++.+...++.+....++..+...
T Consensus 106 ~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~ 151 (170)
T d1p5qa1 106 HLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 151 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888777766544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.51 E-value=2.1e-14 Score=123.88 Aligned_cols=110 Identities=12% Similarity=0.040 Sum_probs=96.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+|++|+..|+++|.++|.+ +.+|..+|.+|...|++++|+..|++|+.++|+++.+|+++|.+|..+|
T Consensus 17 ~g~~~~Ai~~~~kal~~~p~~----------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~ 86 (201)
T d2c2la1 17 GRKYPEAAACYGRAITRNPLV----------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME 86 (201)
T ss_dssp TTCHHHHHHHHHHHHHHCSCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCC----------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 599999999999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAI 266 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 266 (433)
++++|+..|++++.++|++...+...+..+...+....+.
T Consensus 87 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~ 126 (201)
T d2c2la1 87 SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 126 (201)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999876655555555555444443333
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=1.3e-13 Score=127.67 Aligned_cols=195 Identities=10% Similarity=0.019 Sum_probs=164.5
Q ss_pred cchHHHHHHHHHHHHHH-HhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINE-MEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA-VYYSNRAAAYTQ 224 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~ 224 (433)
.+..++|..+|+++++. .|.+ ...|..++......|+++.|...|.+++...|.+. .+|..++.....
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~----------~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~ 146 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKN----------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR 146 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCC----------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 36788999999999985 4544 67889999999999999999999999999999774 579999999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA-QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGW 303 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 303 (433)
.|+++.|...|.++++..|.+...+...|..... .|+.+.|.. .|+++++..|.++.+|..++......|+.++|...
T Consensus 147 ~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~-i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~ 225 (308)
T d2onda1 147 AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK-IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL 225 (308)
T ss_dssp HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHH
Confidence 9999999999999999999999999999987554 689999999 99999999999999999999999999999988877
Q ss_pred ccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 304 DQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
++.+... ...+| .+....|.... ..-...|+.+.+...++++.++.|+.
T Consensus 226 fe~ai~~-----------------------~~~~~----~~~~~iw~~~~-~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 226 FERVLTS-----------------------GSLPP----EKSGEIWARFL-AFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHS-----------------------SSSCG----GGCHHHHHHHH-HHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHh-----------------------CCCCh----HHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 6643211 11233 23344666666 66667799999999999999998886
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.50 E-value=7.3e-13 Score=111.16 Aligned_cols=120 Identities=17% Similarity=0.138 Sum_probs=105.4
Q ss_pred cchHHHHHHHHHHHHHHHhhcccc------ccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAH------AYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~------~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 220 (433)
.|+|.+|+..|+++|...+..... ....+.....+..+|.++...|+|++|+..|+++|+++|+++.+|+++|.
T Consensus 40 ~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~ 119 (169)
T d1ihga1 40 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQ 119 (169)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHH
Confidence 689999999999999876543211 12245667889999999999999999999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAI 266 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 266 (433)
++..+|++++|+..|+++++++|++..++..++.+........++.
T Consensus 120 ~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~ 165 (169)
T d1ihga1 120 GWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165 (169)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988777666554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.50 E-value=9.4e-14 Score=113.59 Aligned_cols=110 Identities=14% Similarity=0.098 Sum_probs=97.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH----------ccCHHHHHHHHHHHHHhcCCCHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ----------SQQYSDAIELYSFAIALCGNNAVYYS 216 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~----------~~~~~~A~~~~~~al~~~p~~~~~~~ 216 (433)
.+.|++|+..|+++++++|++ +.+++.+|.++.. .+.+++|+..|+++++++|+++.+|+
T Consensus 10 ~~~fe~A~~~~e~al~~~P~~----------~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~ 79 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNPLD----------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW 79 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HccHHHHHHHHHHHHhhCCcc----------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHh
Confidence 678999999999999999998 9999999999874 45568999999999999999999999
Q ss_pred HHHHHHHHhhc-----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 013948 217 NRAAAYTQIHQ-----------YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAI 266 (433)
Q Consensus 217 ~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 266 (433)
++|.+|..+|+ |++|+.+|++++.++|++..++..|+.+....+.+.++.
T Consensus 80 ~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~ 140 (145)
T d1zu2a1 80 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY 140 (145)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred hHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988764 799999999999999999999999999876655555543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=5.3e-14 Score=129.09 Aligned_cols=201 Identities=10% Similarity=0.012 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc------HH
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCG------NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY------SK 247 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~ 247 (433)
.|...|.+|...|+|++|+++|.+++++.. ....+|.++|.||..+|++++|+.+|++++.+.+.. ..
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 455557888899999999999999999742 235789999999999999999999999999986554 67
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhh
Q 013948 248 AYSRLGLAYYA-QGNYNDAIEKGFKKALQLDPN------NEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQST 320 (433)
Q Consensus 248 ~~~~lg~~~~~-~g~~~~A~~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 320 (433)
++..+|.++.. .|++++|+. +|++++++.+. ...++..+|.++..+|++++|...+..+.....
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~-~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~-------- 189 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAID-CYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM-------- 189 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHhHhhHHHHHHHHHH-HHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCc--------
Confidence 88889999865 699999999 99999987432 245688899999999999999998775432110
Q ss_pred cCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-c-ccccccccc----ccCC
Q 013948 321 GGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-R-IGGNINLNF----GENM 394 (433)
Q Consensus 321 ~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~-~~~~~~~~l----~~~~ 394 (433)
..+ .........+...+ .++...|+++.|...+.++++++|.+ . .-..++..+ ...+
T Consensus 190 ---------------~~~-~~~~~~~~~~~~~~-~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d 252 (290)
T d1qqea_ 190 ---------------GNR-LSQWSLKDYFLKKG-LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGD 252 (290)
T ss_dssp ---------------SCT-TTGGGHHHHHHHHH-HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTC
T ss_pred ---------------cch-hhhhhHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcC
Confidence 000 11125556777888 88889999999999999999999987 2 222222222 1455
Q ss_pred cHHHHHHHHHHH
Q 013948 395 PEDITGALRSMM 406 (433)
Q Consensus 395 ~~~~~~a~~~~~ 406 (433)
.+.+.+++..+.
T Consensus 253 ~e~~~eai~~y~ 264 (290)
T d1qqea_ 253 SEQLSEHCKEFD 264 (290)
T ss_dssp TTTHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 666666776653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.48 E-value=1.4e-12 Score=109.28 Aligned_cols=128 Identities=14% Similarity=0.149 Sum_probs=108.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccc-----cchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHA-----YNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAA 221 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~-----~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 221 (433)
.|+|.+|+..|+++|...+...... .........+.++|.|++..|++++|+..+++++.++|++..+++++|.+
T Consensus 28 ~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~ 107 (168)
T d1kt1a1 28 GGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEA 107 (168)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHH
Confidence 5999999999999999876643211 11233456778899999999999999999999999999999999999999
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013948 222 YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 222 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al 274 (433)
+..+|++++|+.+|.+++.++|+++.++..++.+....+.+.+...+.|.+.+
T Consensus 108 ~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 108 QLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888777654432444444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=9.8e-14 Score=109.72 Aligned_cols=103 Identities=13% Similarity=0.055 Sum_probs=93.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhcCCC--HHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS---QQYSDAIELYSFAIALCGNN--AVYYSNRAAA 221 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~--~~~~~~la~~ 221 (433)
.+++++|++.|++++..+|.+ +.+++++|.++... +++++|+..|++++..+|.+ ..+|+++|.+
T Consensus 12 ~~~l~~Ae~~Y~~aL~~~p~~----------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 12 VEDLLKFEKKFQSEKAAGSVS----------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHSCCC----------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 589999999999999999998 89999999999864 45668999999999988765 4689999999
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 013948 222 YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ 259 (433)
Q Consensus 222 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 259 (433)
|..+|++++|+.+|+++++++|++..+...++.+..+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888877654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=1.2e-13 Score=128.34 Aligned_cols=222 Identities=6% Similarity=-0.106 Sum_probs=174.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|+.+++++++..|.+ ..+....++..+|.+++..|++++|+..|.+++.+.+.. ...+.+++.
T Consensus 25 ~g~~~~A~~~~~~aL~~~~~~-----~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 25 DGNPDEAERLAKLALEELPPG-----WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp TTCHHHHHHHHHHHHHTCCTT-----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcCC-----CcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 599999999999999998876 234446789999999999999999999999999875543 467889999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC-----HHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDP--------NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN-----EAVKENI 287 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~-----~~~~~~l 287 (433)
++...|++..|+..+.+++.+.+ .....+..+|.++...|+++.+.. .+.+++...+.. ..++..+
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA-SARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHH-HHHHHHHHhhhhhhhhHHHHHHHH
Confidence 99999999999999999987632 234577889999999999999999 999999876643 4566667
Q ss_pred HHHHHHHHHHHHhccccccc-------CCCccch------hhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHH
Q 013948 288 RMAEQKLREERQRTGWDQTT-------SSSHYSQ------ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNM 352 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~~-------~~~~~~~------~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~l 352 (433)
+.++...+...++......+ ...+... .+..+...|++++|...+ ++...|.. +......+.++
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~l 257 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN-NHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT-CGGGHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc-chHHHHHHHHH
Confidence 77777777666655543322 1111111 145577779999999888 77777733 33566778889
Q ss_pred hhcccccCCChhhHHHHHhhhcCC
Q 013948 353 ASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 353 a~~~~~~~g~~~~A~~~~~~al~l 376 (433)
| .++...|++++|...+++++..
T Consensus 258 a-~~~~~~g~~~~A~~~~~~al~~ 280 (366)
T d1hz4a_ 258 A-RAQILLGEFEPAEIVLEELNEN 280 (366)
T ss_dssp H-HHHHHTTCHHHHHHHHHHHHHH
T ss_pred H-HHHHHcCCHHHHHHHHHHHHHH
Confidence 9 9999999999999999998743
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.47 E-value=2.5e-13 Score=105.86 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013948 213 VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQ 292 (433)
Q Consensus 213 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (433)
..++.+|.++.+.|++++|+..|+++++.+|+++.+|..+|.++...|++++|+. +|+++++++|++..++..+|.++.
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~-~~~~al~~~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAII-ALNHARMLDPKDIAVHAALAVSHT 95 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhc-ccccccccccccccchHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHhcccccc
Q 013948 293 KLREERQRTGWDQT 306 (433)
Q Consensus 293 ~~~~~~~a~~~~~~ 306 (433)
..|++++|...+++
T Consensus 96 ~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 96 NEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 99999999887664
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.43 E-value=1.3e-12 Score=107.77 Aligned_cols=115 Identities=13% Similarity=0.092 Sum_probs=99.5
Q ss_pred cchHHHHHHHHHHHHHHHhhcccccc------chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAY------NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 220 (433)
.|+|.+|+..|++++...+....... ..+.....+.++|.+++..|++++|+..++++|+++|+++.+|+++|.
T Consensus 30 ~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~ 109 (153)
T d2fbna1 30 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGV 109 (153)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHH
Confidence 59999999999999998765532211 112234577889999999999999999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN 261 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 261 (433)
++..+|++++|+.+|+++++++|++..+...++.+..++++
T Consensus 110 ~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 110 ANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988776543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=2.1e-12 Score=119.31 Aligned_cols=222 Identities=11% Similarity=0.006 Sum_probs=176.2
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH--------------ccCHHHHHHHHHHHHHh-cCCCH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ--------------SQQYSDAIELYSFAIAL-CGNNA 212 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~--------------~~~~~~A~~~~~~al~~-~p~~~ 212 (433)
...+.+..+|++|+...|.+ +..|+..+..+.. .+..++|...|++|+.. .|.+.
T Consensus 30 ~~~~Rv~~vyerAl~~~~~~----------~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~ 99 (308)
T d2onda1 30 LITKRVMFAYEQCLLVLGHH----------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 99 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH
T ss_pred hhHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCH
Confidence 45677888999999999987 6777776665433 34568999999999975 78899
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 213 VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY-SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 213 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
.+|..++.++...|+++.|...|++++...|.+ ..+|..++....+.|+++.|.. .|+++++..|.+...+...+...
T Consensus 100 ~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~-i~~~al~~~~~~~~~~~~~a~~e 178 (308)
T d2onda1 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM-IFKKAREDARTRHHVYVTAALME 178 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH-HHHHHHTSTTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHH-HHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999976 4589999999999999999999 99999999999999988887664
Q ss_pred HHH-HHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHH
Q 013948 292 QKL-REERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDS 370 (433)
Q Consensus 292 ~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~ 370 (433)
... |+.+.|...+.. ++..+| +++..|...+ ..+...|+.++|...|
T Consensus 179 ~~~~~~~~~a~~i~e~--------------------------~l~~~p-----~~~~~w~~y~-~~~~~~g~~~~aR~~f 226 (308)
T d2onda1 179 YYCSKDKSVAFKIFEL--------------------------GLKKYG-----DIPEYVLAYI-DYLSHLNEDNNTRVLF 226 (308)
T ss_dssp HHTSCCHHHHHHHHHH--------------------------HHHHHT-----TCHHHHHHHH-HHHHTTCCHHHHHHHH
T ss_pred HHhccCHHHHHHHHHH--------------------------HHHhhh-----hhHHHHHHHH-HHHHHcCChHHHHHHH
Confidence 432 445555544331 566788 8899999999 9999999999999999
Q ss_pred hhhcCCCCCcccccccc----ccc--ccCCcHHHHHHHHHHHhhcCCC
Q 013948 371 NVSGSDEPGIRIGGNIN----LNF--GENMPEDITGALRSMMEMFSGP 412 (433)
Q Consensus 371 ~~al~l~P~~~~~~~~~----~~l--~~~~~~~~~~a~~~~~~~~~~~ 412 (433)
++++...|...-....+ ..+ ...+.+.+.+..+++.+.++..
T Consensus 227 e~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 227 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 99999877552111111 111 1346667777778887777543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.1e-15 Score=149.40 Aligned_cols=215 Identities=8% Similarity=-0.035 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHH
Q 013948 152 KASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEA 231 (433)
Q Consensus 152 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 231 (433)
+|+++|++|+++.|+. +.+++.+|.++...+++.+| |+++|..+|+.+..+...+.+ ....|..+
T Consensus 4 eA~q~~~qA~~l~p~~----------a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~L--w~~~y~~~ 68 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADM----------TDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDL--WNHAFKNQ 68 (497)
T ss_dssp HHHHHHHHHHHHHGGG----------TCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHH--HHHHTHHH
T ss_pred HHHHHHHHHHHcCCCC----------HHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHH--HHHHHHHH
Confidence 7889999999998887 77888889999888888876 888888888766554332222 12335566
Q ss_pred HHHHHHHHhcCC--CcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 232 VRDCLKSIDIDP--NYS-KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 232 ~~~~~~al~~~p--~~~-~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
++.+++.++... +.. .....++.+....+.|+.|+. .+++++.++|++...+.++|.++...|+...|...+..+.
T Consensus 69 ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~-~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 147 (497)
T d1ya0a1 69 ITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQ-ELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC 147 (497)
T ss_dssp HHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHH-HHTC-------------------------------CCHHH
T ss_pred HHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHh
Confidence 777777665532 222 222234555666777777777 7777777777777777777777777777777776655543
Q ss_pred CCcc----chhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-c
Q 013948 309 SSHY----SQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-R 381 (433)
Q Consensus 309 ~~~~----~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~ 381 (433)
.... ...+..+...+++++|+..| |+.++| ++..+|+++| .++...|+..+|+.+|.+|+..+|.+ .
T Consensus 148 ~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-----~~~~~~~~Lg-~~~~~~~~~~~A~~~y~ral~~~~~~~~ 221 (497)
T d1ya0a1 148 SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-----SNGQPYNQLA-ILASSKGDHLTTIFYYCRSIAVKFPFPA 221 (497)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TBSHHHHHHH-HHHHHTTCHHHHHHHHHHHHSSSBCCHH
T ss_pred CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----CchHHHHHHH-HHHHHcCCHHHHHHHHHHHHhCCCCCHH
Confidence 2111 11145566667777787777 999999 9999999999 99999999999999999999999999 6
Q ss_pred ccccccc
Q 013948 382 IGGNINL 388 (433)
Q Consensus 382 ~~~~~~~ 388 (433)
+..|+..
T Consensus 222 a~~nL~~ 228 (497)
T d1ya0a1 222 ASTNLQK 228 (497)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.35 E-value=4.7e-12 Score=104.60 Aligned_cols=102 Identities=18% Similarity=0.223 Sum_probs=88.1
Q ss_pred HHHHHH--HHHHHHHccCHHHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 013948 178 AEIFKC--QGNRVMQSQQYSDAIELYSFAIALCGNN------------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 178 ~~~~~~--lg~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 243 (433)
+.++.. .|..++..|+|++|+..|+++++++|+. +.+|.++|.+|..+|++++|+..+++++++.|
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 444444 4888999999999999999999998864 46899999999999999999999999998754
Q ss_pred C-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 244 N-----------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 244 ~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
. ...+++++|.+|..+|++++|+. +|++++++.|..
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~-~~~~Al~l~~~~ 133 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP-EFKKVVEMIEER 133 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHC
T ss_pred ccccccccccchhHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHhhHHh
Confidence 2 34578999999999999999999 999999986543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=9.9e-12 Score=93.39 Aligned_cols=81 Identities=17% Similarity=0.078 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYS 250 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 250 (433)
++.++.+|.+++..|+|.+|+..|++|+++.|.+ ..++.++|.++.++|++++|+..|+++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 4456677777777777777777777777765443 456666777777777777777777777777777776666
Q ss_pred HHHHHHHH
Q 013948 251 RLGLAYYA 258 (433)
Q Consensus 251 ~lg~~~~~ 258 (433)
+++.+...
T Consensus 85 Nl~~~~~~ 92 (95)
T d1tjca_ 85 NLKYFEYI 92 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.8e-12 Score=103.46 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013948 213 VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQ 292 (433)
Q Consensus 213 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (433)
..+-++|.+++..|+|++|+.+|.++++++|+++.++.++|.+|..+|+|++|+. +++++++++|+++..+..++.++.
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~-~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRE-LCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHH-HHHHHHHhCcccHHHHHHHHHHHH
Confidence 4566899999999999999999999999999999999999999999999999999 999999999999887777777777
Q ss_pred HHHHHHHhccccc
Q 013948 293 KLREERQRTGWDQ 305 (433)
Q Consensus 293 ~~~~~~~a~~~~~ 305 (433)
.+|....+...+.
T Consensus 84 ~lg~~~~~~~~~~ 96 (128)
T d1elra_ 84 RIGNSYFKEEKYK 96 (128)
T ss_dssp HHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCHH
Confidence 7776555544433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.6e-11 Score=92.24 Aligned_cols=84 Identities=19% Similarity=0.149 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHH
Q 013948 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN-------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAV 283 (433)
Q Consensus 211 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~ 283 (433)
+++-++.+|.++++.|+|.+|+.+|++|+++.|. ...++.++|.++.++|++++|+. +|+++|+++|+++.+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~-~y~~aL~l~P~~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL-LTKKLLELDPEHQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHH-HHHHHHHhCcCCHHH
Confidence 3566889999999999999999999999998654 36889999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHH
Q 013948 284 KENIRMAEQKLR 295 (433)
Q Consensus 284 ~~~l~~~~~~~~ 295 (433)
+.+++.+...++
T Consensus 83 ~~Nl~~~~~~l~ 94 (95)
T d1tjca_ 83 NGNLKYFEYIMA 94 (95)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999988776654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.13 E-value=1.8e-10 Score=103.15 Aligned_cols=136 Identities=10% Similarity=0.048 Sum_probs=115.6
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQR 300 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 300 (433)
-.+..|++++|+..|+++++.+|+++.++..+|.++...|++++|+. .|+++++++|++..++..++.++...+...++
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~-~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADE-QLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 35678999999999999999999999999999999999999999999 99999999999999999999998888887766
Q ss_pred cccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 301 TGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
....... .+..+| +....+...+ .++...|+.++|...++++.++.|+.
T Consensus 84 ~~~~~~~-------------------------~~~~~p-----~~~~~~l~~a-~~~~~~gd~~~A~~~~~~a~e~~p~~ 132 (264)
T d1zbpa1 84 AQGAATA-------------------------KVLGEN-----EELTKSLVSF-NLSMVSQDYEQVSELALQIEELRQEK 132 (264)
T ss_dssp TTSCCCE-------------------------ECCCSC-----HHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHhhhh-------------------------hcccCc-----hHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 5443311 244467 8888888888 89999999999999999999999998
Q ss_pred -cccccccc
Q 013948 381 -RIGGNINL 388 (433)
Q Consensus 381 -~~~~~~~~ 388 (433)
..+....+
T Consensus 133 ~~~~~~~~f 141 (264)
T d1zbpa1 133 GFLANDTSF 141 (264)
T ss_dssp CEEETTEEE
T ss_pred CccccccCH
Confidence 44444333
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.04 E-value=1e-09 Score=90.11 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=83.6
Q ss_pred cchHHHHHHHHHHHHHHHhhcccccc--chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-----------CHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAY--NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN-----------NAV 213 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----------~~~ 213 (433)
.|+|++|+..|+++|++.|..+.... ..+..+.+|.++|.++...|+|++|+..+++++.+.|. ...
T Consensus 22 ~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 101 (156)
T d2hr2a1 22 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS 101 (156)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHH
Confidence 48999999999999999998743221 22345678999999999999999999999999987542 245
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY 245 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 245 (433)
+++++|.+|..+|++++|+..|++++++.|+.
T Consensus 102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 78999999999999999999999999996643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.02 E-value=2.3e-10 Score=102.55 Aligned_cols=128 Identities=11% Similarity=-0.011 Sum_probs=113.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..++++++.+|.+ +..+..+|.++...|++++|+..|+++++++|++...+..++.++...+
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d----------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~ 78 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKD----------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ 78 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 599999999999999999998 9999999999999999999999999999999999999999999998888
Q ss_pred cHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHH
Q 013948 227 QYAEAVRDCLKSIDI-DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKE 285 (433)
Q Consensus 227 ~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~ 285 (433)
...++...+.+.... .|.....+...+.++...|++++|.. .++++.+..|..+..+.
T Consensus 79 ~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~-~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 79 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE-LALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHCCCCCEEET
T ss_pred ccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHH-HHHHHHhcCCCCCcccc
Confidence 888877665554333 56677788888999999999999999 99999999998776543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.97 E-value=4.8e-09 Score=88.05 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----------------------HHHHHHHHHHHHHhhcHHHHHH
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----------------------AVYYSNRAAAYTQIHQYAEAVR 233 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~ 233 (433)
.....+...|......|++++|+..|.+|+.+.+.+ ..++.+++.++...|++++|+.
T Consensus 9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~ 88 (179)
T d2ff4a2 9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 88 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 347789999999999999999999999999987654 2578999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013948 234 DCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 234 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al 274 (433)
+++++++++|.+..+|..++.++...|++.+|+. .|+++.
T Consensus 89 ~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~-~y~~~~ 128 (179)
T d2ff4a2 89 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALG-AYRRVK 128 (179)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH-HHHHHH
Confidence 9999999999999999999999999999999999 999883
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.88 E-value=5.2e-08 Score=86.67 Aligned_cols=206 Identities=13% Similarity=0.074 Sum_probs=135.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ----SQQYSDAIELYSFAIALCGNNAVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 222 (433)
.+++++|+++|+++.+. .+ ..+++.+|.++.. ..++..|...+..+.. +.++.++..+|.++
T Consensus 15 ~~d~~~A~~~~~kAa~~--g~----------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~--~~~~~a~~~l~~~~ 80 (265)
T d1ouva_ 15 EKDFTQAKKYFEKACDL--KE----------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LNYSNGCHLLGNLY 80 (265)
T ss_dssp TTCHHHHHHHHHHHHHT--TC----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--CC----------HHHHHHHHHHHHcCCCcchhHHHHHHhhccccc--ccccchhhcccccc
Confidence 48999999999999764 23 7789999999987 7799999999999876 45888899999888
Q ss_pred HH----hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013948 223 TQ----IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA----QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL 294 (433)
Q Consensus 223 ~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (433)
.. ..+.+.|+..++.+....+ ..+...+|..+.. ......|.. .+.+... +.+...+..++.++...
T Consensus 81 ~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~-~~~~~~~--~~~~~~~~~L~~~~~~~ 155 (265)
T d1ouva_ 81 YSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVE-YFTKACD--LNDGDGCTILGSLYDAG 155 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHH-HHHHHHH--TTCHHHHHHHHHHHHHT
T ss_pred ccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHH-Hhhhhhc--ccccchhhhhhhhhccC
Confidence 75 4578999999999988654 5566667776665 445677777 6666554 56677888888887752
Q ss_pred ----HHHHHhcccccccCCC-ccc---hhhhhhhc----CCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhccccc-
Q 013948 295 ----REERQRTGWDQTTSSS-HYS---QESNQSTG----GFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQA- 359 (433)
Q Consensus 295 ----~~~~~a~~~~~~~~~~-~~~---~~~~~~~~----~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~- 359 (433)
.+...+..+...+... ... ..+.+|.. ..++++|+..| +.+. .++.+++++| .++..
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~-------g~~~a~~~LG-~~y~~G 227 (265)
T d1ouva_ 156 RGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-------ENGGGCFNLG-AMQYNG 227 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHH-HHHHTT
T ss_pred CCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcc-------cCHHHHHHHH-HHHHcC
Confidence 2233444443322211 000 11223332 24455555555 3332 2245666777 55543
Q ss_pred ---CCChhhHHHHHhhhcCCCCC
Q 013948 360 ---QPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 360 ---~g~~~~A~~~~~~al~l~P~ 379 (433)
..++++|+.+|++|.++.+.
T Consensus 228 ~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 228 EGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCccCHHHHHHHHHHHHHCcCH
Confidence 33667777777777655433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.80 E-value=1.9e-08 Score=84.21 Aligned_cols=63 Identities=8% Similarity=-0.002 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSID 240 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 240 (433)
..++..++.++...|++++|+..+++++..+|.+..+|..++.++..+|++.+|+..|+++.+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999843
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.76 E-value=5.7e-08 Score=86.40 Aligned_cols=189 Identities=15% Similarity=0.118 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hhcHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ----IHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
+.+++.+|..++..+++++|+++|+++.+. ++..++++||.+|.. ..++..|..++..+... .++.+...+|
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~ 77 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccc
Confidence 678999999999999999999999999765 689999999999998 66999999999998875 5788899999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH----HHHHhcccccccCC-Cccc---hhhhhhhc
Q 013948 254 LAYYA----QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLR----EERQRTGWDQTTSS-SHYS---QESNQSTG 321 (433)
Q Consensus 254 ~~~~~----~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~-~~~~---~~~~~~~~ 321 (433)
.++.. ..+.+.|.. +++++....+ ..+...++..+.... ....+......... .... ..+..|..
T Consensus 78 ~~~~~~~~~~~~~~~a~~-~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQ-YYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHH-HHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHH-HHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 98876 568999999 9999987654 555666665554311 12222222222111 1111 11334444
Q ss_pred CCCCCCCCCcc----cccCCCCCCCccHHHHHHHHhhccccc----CCChhhHHHHHhhhcCCCCC
Q 013948 322 GFRSHGTPPSF----TMPFNTNALPTDIASMLMNMASNMPQA----QPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 322 ~~~~~~A~~~~----al~~~p~~~~~~~~~a~~~la~~~~~~----~g~~~~A~~~~~~al~l~P~ 379 (433)
........... ....++ .++.+.+++| .++.. ..++++|+.+|+++.++...
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~~-----g~~~A~~~lg-~~y~~g~~~~~d~~~A~~~~~~aa~~g~~ 214 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACDL-----KDSPGCFNAG-NMYHHGEGATKNFKEALARYSKACELENG 214 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHH-HHHHHTCSSCCCHHHHHHHHHHHHHTTCH
T ss_pred CCCcccccccchhhhhccccc-----cccccccchh-hhcccCcccccchhhhhhhHhhhhcccCH
Confidence 33232222221 333355 6788999999 77775 67899999999999998544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=2.9e-07 Score=70.55 Aligned_cols=84 Identities=17% Similarity=0.101 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHhh---cHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013948 211 NAVYYSNRAAAYTQIH---QYAEAVRDCLKSIDIDPNYS-KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286 (433)
Q Consensus 211 ~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~ 286 (433)
.....|++|+++.+.. +..+|+..++.+++.+|.+. ++++.||..|+++|+|++|.. +++++|+++|++..+...
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~-~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR-YVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHCTTCHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHccCCCcHHHHHH
Confidence 3788899999998654 56789999999999988764 799999999999999999999 999999999999998877
Q ss_pred HHHHHHHHH
Q 013948 287 IRMAEQKLR 295 (433)
Q Consensus 287 l~~~~~~~~ 295 (433)
...+..++.
T Consensus 113 ~~~Ie~~~~ 121 (124)
T d2pqrb1 113 KSMVEDKIQ 121 (124)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777665554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.39 E-value=2.9e-06 Score=66.78 Aligned_cols=112 Identities=20% Similarity=0.126 Sum_probs=93.8
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ--- 224 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 224 (433)
.|+++|+.+|+++.+... +.+.+.++. ....++++|+..|+++.+. +++.+++.+|.+|..
T Consensus 7 kd~~~A~~~~~kaa~~g~------------~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~ 70 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNE------------MFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKY 70 (133)
T ss_dssp HHHHHHHHHHHHHHHTTC------------TTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS
T ss_pred cCHHHHHHHHHHHHHCCC------------hhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccc
Confidence 589999999999987632 345666654 3457899999999999875 689999999999986
Q ss_pred -hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhCC
Q 013948 225 -IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA----QGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 225 -~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~al~~~p 278 (433)
..++.+|+.+|+++.+. .++.+.+.||.+|.. ..++.+|+. +|+++.+...
T Consensus 71 ~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~-~~~~Aa~~G~ 126 (133)
T d1klxa_ 71 VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVK-TFEKACRLGS 126 (133)
T ss_dssp SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH-HHHHHHHTTC
T ss_pred cchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHH-HHHHHHHCCC
Confidence 45799999999999886 578899999999988 568999999 9999988654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.28 E-value=4.9e-06 Score=63.54 Aligned_cols=80 Identities=6% Similarity=-0.064 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQS---QQYSDAIELYSFAIALCGNN-AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 178 ~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
..+.+..|.++... .+..+|+..++.+++.+|.+ .++++++|.+|+++|+|++|..+++++++++|++..+....-
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 56788888888765 45679999999999999877 489999999999999999999999999999999998876665
Q ss_pred HHHH
Q 013948 254 LAYY 257 (433)
Q Consensus 254 ~~~~ 257 (433)
.+..
T Consensus 115 ~Ie~ 118 (124)
T d2pqrb1 115 MVED 118 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.05 E-value=4.2e-05 Score=59.81 Aligned_cols=82 Identities=16% Similarity=0.073 Sum_probs=69.8
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ----SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYT 223 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 223 (433)
.+.++|+.+++++.+.. + +.+.+.+|.+|.. ..++.+|+++|+++.+. .++.+.+.+|.+|.
T Consensus 37 ~~~~~a~~~~~~aa~~g--~----------~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~ 102 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN--S----------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQY 102 (133)
T ss_dssp SCHHHHHHHHHHHHHTT--C----------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHhhhhccc--c----------hhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHH
Confidence 57789999999987752 2 7789999999886 56899999999999875 58999999999998
Q ss_pred H----hhcHHHHHHHHHHHHhcCC
Q 013948 224 Q----IHQYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 224 ~----~~~~~~A~~~~~~al~~~p 243 (433)
. ..++.+|+.+|+++.++..
T Consensus 103 ~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 103 AGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred cCCccCCCHHHHHHHHHHHHHCCC
Confidence 7 4589999999999998754
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=88.66 E-value=7.9 Score=34.91 Aligned_cols=189 Identities=7% Similarity=-0.151 Sum_probs=112.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH----HHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAY----TQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...+..-....+.+.|...+.+.....+.....+....... ...+..+.+...+........+.....-.++. ..
T Consensus 218 ~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al 296 (450)
T d1qsaa1 218 AAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-AL 296 (450)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HH
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHH-HH
Confidence 34444455567899999999887776666554443333322 33456788888888777766555544444454 45
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhh-hhhhcCCCCCCCCCcccccC
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQES-NQSTGGFRSHGTPPSFTMPF 336 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~al~~ 336 (433)
..+++..+.. ++...-.-....+...+.+|+++..+|+.+.|..++..+...+.-... ..-..+..+.-... .+..
T Consensus 297 ~~~~~~~~~~-~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~--~~~~ 373 (450)
T d1qsaa1 297 GTGDRRGLNT-WLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKID--KAPQ 373 (450)
T ss_dssp HHTCHHHHHH-HHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCC--CCCS
T ss_pred HcCChHHHHH-HHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcC--CCCc
Confidence 5689999888 777643322345778899999999999999998887776543221110 11111111111111 1111
Q ss_pred CCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCC
Q 013948 337 NTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 337 ~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~ 377 (433)
.+. ..-....-...+ ..+...|+..+|...+..++..-
T Consensus 374 ~~~--~~~~~~~~~~ra-~~L~~~g~~~~A~~e~~~l~~~~ 411 (450)
T d1qsaa1 374 NVD--SALTQGPEMARV-RELMYWNLDNTARSEWANLVKSK 411 (450)
T ss_dssp CCC--CHHHHSHHHHHH-HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHH--HhhhcChHHHHH-HHHHHcCCchHHHHHHHHHHhCC
Confidence 110 001111233556 67888999999999998877543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.93 E-value=3.5 Score=36.03 Aligned_cols=106 Identities=16% Similarity=0.185 Sum_probs=74.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 013948 181 FKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG 260 (433)
Q Consensus 181 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 260 (433)
+-.+..++...+++..|.+.+.++ ++...|.....++....+..-|.. ....+. .++.-...+-..+...|
T Consensus 43 ~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i-~~~~~~---~~~d~l~~~v~~ye~~~ 113 (336)
T d1b89a_ 43 FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM-CGLHIV---VHADELEELINYYQDRG 113 (336)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHH-TTTTTT---TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHH-HHHHhh---cCHHHHHHHHHHHHHcC
Confidence 334456677888899988887765 467888888888887776654322 111112 24444455677778889
Q ss_pred CHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013948 261 NYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 261 ~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
.+++.+. .++.++...+.+......++.++.+.+.
T Consensus 114 ~~e~Li~-~Le~~~~~~~~~~~~~~~L~~lyak~~~ 148 (336)
T d1b89a_ 114 YFEELIT-MLEAALGLERAHMGMFTELAILYSKFKP 148 (336)
T ss_dssp CHHHHHH-HHHHHTTSTTCCHHHHHHHHHHHHTTCH
T ss_pred ChHHHHH-HHHHHHcCCccchHHHHHHHHHHHHhCh
Confidence 9999999 8998888888888888888887765443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=84.82 E-value=2.7 Score=38.33 Aligned_cols=172 Identities=7% Similarity=-0.080 Sum_probs=103.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN 261 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 261 (433)
..++..+...+..+.|...+........+........+. ....+++..+...+...-......+...|.+|.++...|+
T Consensus 256 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~ 334 (450)
T d1qsaa1 256 DIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR 334 (450)
T ss_dssp HHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHH-HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCC
Confidence 334444455677788888887776554444444444444 5567899999888876543333457888999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccc-cccCCCccch--------hhhhhhcCCCCCCCCCcc
Q 013948 262 YNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWD-QTTSSSHYSQ--------ESNQSTGGFRSHGTPPSF 332 (433)
Q Consensus 262 ~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~--------~~~~~~~~~~~~~A~~~~ 332 (433)
.++|.. +|..+.. .+ ..|-.|+.. .+|.. .... .......... ........|+...|...+
T Consensus 335 ~~~A~~-~~~~~a~-~~---~fYG~LAa~--~Lg~~---~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~ 404 (450)
T d1qsaa1 335 EAEAKE-ILHQLMQ-QR---GFYPMVAAQ--RIGEE---YELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEW 404 (450)
T ss_dssp HHHHHH-HHHHHHT-SC---SHHHHHHHH--HTTCC---CCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHH-HHHHHhc-CC---ChHHHHHHH--HcCCC---CCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHH
Confidence 999999 9998875 33 233333322 23321 1110 0011111110 022344557777777666
Q ss_pred --ccc-CCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhh
Q 013948 333 --TMP-FNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVS 373 (433)
Q Consensus 333 --al~-~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~a 373 (433)
++. .+| .-...++ .+-...|.++.|+....++
T Consensus 405 ~~l~~~~~~--------~~~~~la-~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 405 ANLVKSKSK--------TEQAQLA-RYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHTTCCH--------HHHHHHH-HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHhCCCH--------HHHHHHH-HHHHHCCChhHHHHHHHHH
Confidence 322 222 3444566 7778899999999888776
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.88 E-value=0.33 Score=32.56 Aligned_cols=33 Identities=12% Similarity=-0.068 Sum_probs=29.3
Q ss_pred CCccHHHHHHHHhhcccccCCChhhHHHHHhhhc
Q 013948 341 LPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSG 374 (433)
Q Consensus 341 ~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al 374 (433)
+|-+.+..+-..| .-+...|++++|++++++|.
T Consensus 3 sPLN~AH~~~RrA-er~l~~~rydeAIech~kA~ 35 (83)
T d2crba1 3 GPLNLAHQQSRRA-DRLLAAGKYEEAISCHRKAT 35 (83)
T ss_dssp THHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 5678888999999 99999999999999998864
|