Citrus Sinensis ID: 013959

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
MSSVKFASQDSHAHEDNNNSERHDLLHHDSIVDPTAAINMSLPCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccccccccccccc
cccEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccEHHcccccEEcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHcccccccccccccHHHHHHHHHHHHHHHHcccccccccccc
mssvkfasqdshahednnnserhdllhhdsivdptaainmslpCETFLKAAVSLKDQVVEVTwrrgsggggepgrgmdptlytGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQeralpagpeeggfgmsYDLLYGRAGFLWAALFVNKhlgagtlpnellMPIVDAVLaggragatantacplmyrwhgtrywgaanGLAGILQVLLhfplseedaedVKGTLRYMmsnrfpqsgnypvsegnprdklvqwshGATGVAITLCKasqvsvfpsdreFRDAAIEAGEVLWKNGLvkkvgladgaagnAYAFLSLYRLTGETIYVERANAFSSFLYHNaqnlvtsghtrgadhgysLFQGLAGTACiwfdllepvnarfpgyel
mssvkfasqdshahednnnSERHDLLHHDSIVDPTAAINMSLPCETFLKAAVSLKDQVVEVTWrrgsggggepgrgmdPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTflcgrggiyAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL
MSSVKFASQDSHAHEDNNNSERHDLLHHDSIVDPTAAINMSLPCETFLKAAVSLKDQVVEVTWrrgsggggepgrgMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLaggragatantaCPLMYRWHGTRYWGAANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL
**************************HHDSIVDPTAAINMSLPCETFLKAAVSLKDQVVEVTWRRG**********MDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFPLSE********TLRY*********************KLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARF*****
***************************************MSLPCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCAS***********LCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL
******************NSERHDLLHHDSIVDPTAAINMSLPCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL
***************************HDSIVDPTAAINMSLPCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiii
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MSSVKFASQDSHAHEDNNNSERHDLLHHDSIVDPTAAINMSLPCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query433 2.2.26 [Sep-21-2011]
Q9JJK2450 LanC-like protein 2 OS=Mu yes no 0.764 0.735 0.371 1e-55
Q9NS86450 LanC-like protein 2 OS=Ho yes no 0.764 0.735 0.363 2e-53
O43813399 LanC-like protein 1 OS=Ho no no 0.773 0.839 0.358 9e-50
Q90ZL2405 LanC-like protein 1 OS=Da yes no 0.782 0.837 0.352 2e-49
O89112399 LanC-like protein 1 OS=Mu no no 0.773 0.839 0.352 2e-47
Q9QX69399 LanC-like protein 1 OS=Ra no no 0.773 0.839 0.349 5e-47
Q6ZV70420 LanC-like protein 3 OS=Ho no no 0.792 0.816 0.348 1e-43
Q8CD19420 LanC-like protein 3 OS=Mu no no 0.799 0.823 0.345 2e-43
Q9Y0Y7419 LanC-like protein 3 homol yes no 0.778 0.804 0.319 4e-39
Q29HZ1420 LanC-like protein 3 homol no no 0.769 0.792 0.306 9e-37
>sp|Q9JJK2|LANC2_MOUSE LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1 Back     alignment and function desciption
 Score =  218 bits (554), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 205/371 (55%), Gaps = 40/371 (10%)

Query: 78  DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRD-STRHVTFLCGRGGIY 136
           D + YTG  G A + L+ Y +TG+Q  LL S   +D     +R+ S R VTFLCG  G  
Sbjct: 99  DCSAYTGWTGIALLYLQLYRVTGDQTYLLRS---LDYVKRTLRNLSGRRVTFLCGDAGPL 155

Query: 137 AIGAVVANRMGDRSRRDFFLNLFLE-----IAQERALPAGPEEGGFGMSYDLLYGRAGFL 191
           A+GAV+ +++         +   L+     + QE  LP            +LLYGRAG+L
Sbjct: 156 AVGAVIYHKLKSECESQECITKLLQMHRTIVCQESELPD-----------ELLYGRAGYL 204

Query: 192 WAALFVNKHLGAGTLPNELLMPIVDAVLAGGRA---GATANTACPLMYRWHGTRYWGAAN 248
           +A L++N  +G GT+    +  +V A++  G++       +  CPL+Y+WH  +Y GAA+
Sbjct: 205 YALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLSREERKSERCPLLYQWHRKQYVGAAH 264

Query: 249 GLAGILQVLLHFPLSEEDAED----VKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSH 304
           G+AGI  +L+  P ++ D E     VK ++ Y+   +F +SGNYP S  N  D+LV W H
Sbjct: 265 GMAGIYYMLMQ-PEAKVDQETLTEMVKPSIDYVRHKKF-RSGNYPSSLSNETDRLVHWCH 322

Query: 305 GATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKK-VGLADGAAGNAYAFLS 363
           GA GV   L +A Q  VF  ++  ++ A+E  +V+W+ GL++K  G+  G +GN Y+FLS
Sbjct: 323 GAPGVIHVLLQAYQ--VFKEEKYLKE-AMECSDVIWQRGLLRKGYGICHGTSGNGYSFLS 379

Query: 364 LYRLTGETIYVERANAFSSFLYHNAQNLVTSGH-TRGADHGYSLFQGLAGTACIWFDLLE 422
           LYRLT +  Y+ RA  F+ +       L    H  R  D  YSLF+G+AG      D+L 
Sbjct: 380 LYRLTQDKKYLYRACKFAEWC------LDYGAHGCRIPDRPYSLFEGMAGAVHFLSDILV 433

Query: 423 PVNARFPGYEL 433
           P  ARFP +EL
Sbjct: 434 PETARFPAFEL 444
Necessary for abscisic acid (ABA) binding on the cell membrane and activation of the ABA signaling pathway in granulocytes.
Mus musculus (taxid: 10090)
>sp|Q9NS86|LANC2_HUMAN LanC-like protein 2 OS=Homo sapiens GN=LANCL2 PE=1 SV=1 Back     alignment and function description
>sp|O43813|LANC1_HUMAN LanC-like protein 1 OS=Homo sapiens GN=LANCL1 PE=1 SV=1 Back     alignment and function description
>sp|Q90ZL2|LANC1_DANRE LanC-like protein 1 OS=Danio rerio GN=lancl1 PE=2 SV=1 Back     alignment and function description
>sp|O89112|LANC1_MOUSE LanC-like protein 1 OS=Mus musculus GN=Lancl1 PE=1 SV=1 Back     alignment and function description
>sp|Q9QX69|LANC1_RAT LanC-like protein 1 OS=Rattus norvegicus GN=Lancl1 PE=2 SV=2 Back     alignment and function description
>sp|Q6ZV70|LANC3_HUMAN LanC-like protein 3 OS=Homo sapiens GN=LANCL3 PE=2 SV=2 Back     alignment and function description
>sp|Q8CD19|LANC3_MOUSE LanC-like protein 3 OS=Mus musculus GN=Lancl3 PE=2 SV=2 Back     alignment and function description
>sp|Q9Y0Y7|LANC3_DROME LanC-like protein 3 homolog OS=Drosophila melanogaster GN=CG2061 PE=1 SV=1 Back     alignment and function description
>sp|Q29HZ1|LANC3_DROPS LanC-like protein 3 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15215 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
224081108423 predicted protein [Populus trichocarpa] 0.928 0.950 0.776 0.0
225468981421 PREDICTED: lanC-like protein 2 [Vitis vi 0.967 0.995 0.756 0.0
147854361421 hypothetical protein VITISV_029722 [Viti 0.967 0.995 0.754 0.0
297741827467 unnamed protein product [Vitis vinifera] 0.967 0.897 0.684 1e-180
224093724390 predicted protein [Populus trichocarpa] 0.896 0.994 0.770 1e-180
315307498429 hypothetical protein [Gossypium hirsutum 0.986 0.995 0.719 1e-177
255581730432 catalytic, putative [Ricinus communis] g 0.953 0.956 0.737 1e-175
315307490432 hypothetical protein [Gossypium hirsutum 0.986 0.988 0.703 1e-172
357463289415 G protein-coupled receptor-like protein 0.916 0.956 0.709 1e-170
8489877424 putative 7-transmembrane G-protein-coupl 0.958 0.978 0.684 1e-169
>gi|224081108|ref|XP_002306296.1| predicted protein [Populus trichocarpa] gi|222855745|gb|EEE93292.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/412 (77%), Positives = 362/412 (87%), Gaps = 10/412 (2%)

Query: 22  RHDLLHHDSIVDPTAAINMSLPCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTL 81
           R DL H    +DPT+  +M LP ET L+AA+SLK+QVVEVTW R     G+ G G+DPT+
Sbjct: 22  RLDLTHR---IDPTST-DMLLPHETLLRAAISLKNQVVEVTWERD----GKTGTGIDPTV 73

Query: 82  YTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAV 141
           YTGLLGTAF CLRSYE+TGN+Q+LLL +EI+DTC+   R S+RH+TFLCGRGG+YA+GAV
Sbjct: 74  YTGLLGTAFTCLRSYEVTGNEQDLLLCSEIVDTCSVSARTSSRHITFLCGRGGLYALGAV 133

Query: 142 VANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHL 201
            A+  GDR RRDFF+NLFLE+AQERALP GPEEGGFGMSY+L+YGRAGFLWAALF+NKHL
Sbjct: 134 AASYKGDRRRRDFFVNLFLEVAQERALPVGPEEGGFGMSYELMYGRAGFLWAALFINKHL 193

Query: 202 GAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFP 261
           G GTLP +LLMP+VDAVLAGGRAGA+ N ACPLMYRWHGTRYWGA NGLAGILQVLLHFP
Sbjct: 194 GEGTLPCDLLMPVVDAVLAGGRAGASDNAACPLMYRWHGTRYWGAPNGLAGILQVLLHFP 253

Query: 262 LSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSV 321
           LS ED EDVK TLRYMMSNRFP SGNYP SEGNPRDKLVQWSHGATG+AITLCKAS+  +
Sbjct: 254 LSIEDVEDVKATLRYMMSNRFPHSGNYPSSEGNPRDKLVQWSHGATGMAITLCKASE--M 311

Query: 322 FPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFS 381
           FP+DREFR+AAIEAGEV+WK+GLVKKVGLADGAAGNAYAFLSLYRLTGE+IY ERANAF+
Sbjct: 312 FPNDREFRNAAIEAGEVVWKSGLVKKVGLADGAAGNAYAFLSLYRLTGESIYEERANAFA 371

Query: 382 SFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL 433
           SFLYHNA  LVT G  RGA+H YSLFQGLAGTAC+WFDLL+P ++RFPGYEL
Sbjct: 372 SFLYHNASELVTIGDARGANHAYSLFQGLAGTACLWFDLLKPESSRFPGYEL 423

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225468981|ref|XP_002262692.1| PREDICTED: lanC-like protein 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147854361|emb|CAN83415.1| hypothetical protein VITISV_029722 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297741827|emb|CBI33140.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224093724|ref|XP_002309963.1| predicted protein [Populus trichocarpa] gi|222852866|gb|EEE90413.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|315307498|gb|ADU04157.1| hypothetical protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|255581730|ref|XP_002531667.1| catalytic, putative [Ricinus communis] gi|223528698|gb|EEF30711.1| catalytic, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|315307490|gb|ADU04150.1| hypothetical protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|357463289|ref|XP_003601926.1| G protein-coupled receptor-like protein [Medicago truncatula] gi|355490974|gb|AES72177.1| G protein-coupled receptor-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|8489877|gb|AAF75794.1|AF272710_1 putative 7-transmembrane G-protein-coupled receptor [Solanum chacoense] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
TAIR|locus:2171800433 GCL1 "GCR2-like 1" [Arabidopsi 0.990 0.990 0.645 3.3e-150
TAIR|locus:2051449405 GCL2 "GCR2-like 2" [Arabidopsi 0.782 0.837 0.459 1.1e-80
TAIR|locus:2011466410 GPCR "G protein coupled recept 0.692 0.731 0.477 2.5e-74
UNIPROTKB|I3LIW1412 LANCL2 "Uncharacterized protei 0.775 0.815 0.374 1.7e-52
MGI|MGI:1919085450 Lancl2 "LanC (bacterial lantib 0.775 0.746 0.368 2.1e-52
UNIPROTKB|A6QPG6433 LANCL2 "Uncharacterized protei 0.775 0.775 0.366 7.2e-52
UNIPROTKB|E1C3R4455 LANCL2 "Uncharacterized protei 0.775 0.738 0.363 1.2e-51
RGD|1310809450 Lancl2 "LanC lantibiotic synth 0.775 0.746 0.366 1.2e-51
UNIPROTKB|F1PEY8366 LANCL2 "Uncharacterized protei 0.775 0.918 0.363 1.1e-50
UNIPROTKB|Q9NS86450 LANCL2 "LanC-like protein 2" [ 0.775 0.746 0.357 2.2e-50
TAIR|locus:2171800 GCL1 "GCR2-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1466 (521.1 bits), Expect = 3.3e-150, P = 3.3e-150
 Identities = 280/434 (64%), Positives = 338/434 (77%)

Query:     2 SSVKFASQDSHAHEDNNNS-ERHDLLHHDSIVDPTAAINMSLPCETFLKAAVSLKDQVVE 60
             SSV F ++     +D N + E       D ++   +A  +SLP E+FL+AA  LK+QVVE
Sbjct:     3 SSVDFVTEQGRCGDDGNGAGETVKNGEIDHLLSEPSAPTISLPTESFLRAATLLKNQVVE 62

Query:    61 VTWXXXXXXXXXXXX-XMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVV 119
              TW              +DPT+YTGLLGTAF CL+SYE+T N Q+LL  AEIIDTCA+V 
Sbjct:    63 ATWKGGVEALASGSGPVLDPTVYTGLLGTAFTCLKSYEVTRNHQDLLTCAEIIDTCANVA 122

Query:   120 RDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGM 179
             R +TRHVTFLCGRGG+  +GA+VAN  GD+S+RDFFL LFLE+A+ER LPAGPEEGGFGM
Sbjct:   123 RATTRHVTFLCGRGGVCTLGAIVANYRGDQSKRDFFLGLFLELAEERELPAGPEEGGFGM 182

Query:   180 SYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLXXXXXXXXXXXXCPLMYRWH 239
             SYDLLYGRAGFLWAALF+N++LG GT+P+ LL PIV A+L            CPL+YR+H
Sbjct:   183 SYDLLYGRAGFLWAALFLNRYLGQGTVPDHLLSPIVAAILAGGRVGAADHEACPLLYRFH 242

Query:   240 GTRYWGAANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKL 299
             GTR+WGAANGLAGIL VLLHFPLSEED +DV+GTLRYMMSNRFP SGNYP SEGNPRDKL
Sbjct:   243 GTRFWGAANGLAGILYVLLHFPLSEEDVKDVQGTLRYMMSNRFPNSGNYPCSEGNPRDKL 302

Query:   300 VQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAY 359
             VQW+HGATG+AITL KASQV  FP +R+FR+AAIEAGEV+WK+GLVKKVGLADG AGNAY
Sbjct:   303 VQWAHGATGMAITLAKASQV--FPKERDFREAAIEAGEVVWKSGLVKKVGLADGVAGNAY 360

Query:   360 AFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFD 419
             AFLSLYRLTG+ +Y ERA AF+S+L  +A  LV    ++  +H YSLF+GLAG  C+WFD
Sbjct:   361 AFLSLYRLTGDVVYEERAKAFASYLCRDAIELVNMT-SQETEHDYSLFRGLAGPVCLWFD 419

Query:   420 LLEPVNARFPGYEL 433
             L+ PV+++FPGYE+
Sbjct:   420 LVSPVDSKFPGYEI 433
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0019898 "extrinsic to membrane" evidence=ISS
TAIR|locus:2051449 GCL2 "GCR2-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011466 GPCR "G protein coupled receptor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|I3LIW1 LANCL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1919085 Lancl2 "LanC (bacterial lantibiotic synthetase component C)-like 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A6QPG6 LANCL2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1C3R4 LANCL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1310809 Lancl2 "LanC lantibiotic synthetase component C-like 2 (bacterial)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PEY8 LANCL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NS86 LANCL2 "LanC-like protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00050115
hypothetical protein (424 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
cd04794343 cd04794, euk_LANCL, eukaryotic Lanthionine synthet 1e-119
pfam05147352 pfam05147, LANC_like, Lanthionine synthetase C-lik 1e-100
cd04434343 cd04434, LanC_like, LanC-like proteins 1e-56
cd04792825 cd04792, LanM-like, LanM-like proteins 7e-16
TIGR03897931 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosyn 6e-07
TIGR03897931 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosyn 4e-04
cd04793382 cd04793, LanC, LanC is the cyclase enzyme of the l 0.002
>gnl|CDD|240111 cd04794, euk_LANCL, eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information 
 Score =  350 bits (901), Expect = e-119
 Identities = 162/358 (45%), Positives = 211/358 (58%), Gaps = 25/358 (6%)

Query: 82  YTGLLGTAFICLRSYE----LTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYA 137
           YTG  G A++ L+ YE    LT +Q  L  + E I      + D  R ++FLCG  G+YA
Sbjct: 1   YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIKASLRAIPD-DRRISFLCGNAGVYA 59

Query: 138 IGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFV 197
           +GA V + + D    D FL+ FL++ +    P        G+  +LLYGRAG+L+A LF+
Sbjct: 60  VGAAVYHYLKDEDEVDEFLSKFLQLLESVVSP------DSGLPDELLYGRAGYLYALLFL 113

Query: 198 NKHLGAGTLPNELLMPIVDAVLAGGRAGAT-ANTACPLMYRWHGTRYWGAANGLAGILQV 256
           NK  G   +P+ L+  I DA+L  GR GA      CPLMY WHG  Y GAA+GLAGIL +
Sbjct: 114 NKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGILYI 173

Query: 257 LLHFPL---SEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNP-RDKLVQWSHGATGVAIT 312
           LL  PL       A  +K +L Y++S +FP SGN+P S GN  RD+LVQW HGA G+   
Sbjct: 174 LLQTPLFLLKPSLAPLIKRSLDYLLSLQFP-SGNFPSSLGNRKRDRLVQWCHGAPGIVYL 232

Query: 313 LCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKKV-GLADGAAGNAYAFLSLYRLTGET 371
           L KA  V     + ++ +AAI+ GE++WK GL+KK  GL  G AGNAYAFL LYRLTG+ 
Sbjct: 233 LAKAYLVF---KEEQYLEAAIKCGELIWKRGLLKKGPGLCHGIAGNAYAFLLLYRLTGDL 289

Query: 372 IYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFP 429
            Y+ RA  F+ FL  N          R  D  +SLF+GLAGTAC   DLL+P  A FP
Sbjct: 290 KYLYRACKFAEFL-INYG---FKNGARIPDRPFSLFEGLAGTACFLADLLQPRQAGFP 343

This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs. Length = 343
>gnl|CDD|218467 pfam05147, LANC_like, Lanthionine synthetase C-like protein Back     alignment and domain information
>gnl|CDD|239881 cd04434, LanC_like, LanC-like proteins Back     alignment and domain information
>gnl|CDD|240109 cd04792, LanM-like, LanM-like proteins Back     alignment and domain information
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein LanM Back     alignment and domain information
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein LanM Back     alignment and domain information
>gnl|CDD|240110 cd04793, LanC, LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 433
KOG2787403 consensus Lanthionine synthetase C-like protein 1 100.0
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 100.0
COG4403963 LcnDR2 Lantibiotic modifying enzyme [Defense mecha 100.0
PF05147355 LANC_like: Lanthionine synthetase C-like protein; 100.0
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 100.0
cd04793382 LanC LanC is the cyclase enzyme of the lanthionine 100.0
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 100.0
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 100.0
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 99.93
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 99.93
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 99.91
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 99.9
cd04793382 LanC LanC is the cyclase enzyme of the lanthionine 99.86
PF05147355 LANC_like: Lanthionine synthetase C-like protein; 99.81
COG4403963 LcnDR2 Lantibiotic modifying enzyme [Defense mecha 99.79
KOG2787403 consensus Lanthionine synthetase C-like protein 1 99.54
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 97.0
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 96.22
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 95.69
COG1331667 Highly conserved protein containing a thioredoxin 95.48
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 95.32
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 95.11
PF07944 520 DUF1680: Putative glycosyl hydrolase of unknown fu 95.06
cd00249 384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 94.61
COG1331667 Highly conserved protein containing a thioredoxin 93.39
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 93.31
PF07944520 DUF1680: Putative glycosyl hydrolase of unknown fu 93.02
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 91.83
PF07221 346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 91.01
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 89.14
COG3533589 Uncharacterized protein conserved in bacteria [Fun 87.87
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 87.75
COG3533 589 Uncharacterized protein conserved in bacteria [Fun 85.56
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 85.27
KOG2429622 consensus Glycosyl hydrolase, family 47 [Carbohydr 82.02
PLN02993763 lupeol synthase 81.2
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1e-66  Score=478.90  Aligned_cols=371  Identities=51%  Similarity=0.901  Sum_probs=332.0

Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCccccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHH
Q 013959           38 INMSLPCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCAS  117 (433)
Q Consensus        38 ~~~~~~~~~~l~~A~~i~d~i~~~~~~~~~~~~~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~  117 (433)
                      ++-++-.+.+++.|.+|.|.+++.+|....    .  .+.+.++|+|..|||+++.++|++|.|+.++..+.++++.+..
T Consensus        28 ~~~~~~~e~~~r~~~~ikd~~~~~~~~~S~----d--~~~d~tlYtG~~GiAfl~~kly~vTrd~~~L~~~~e~Vk~~~~  101 (403)
T KOG2787|consen   28 PTGKLFTEFIKRLATKIKDLVVEMTWGKSG----D--EVRDGTLYTGWLGIAFLYLKLYEVTRDLYDLLLCLEIVKACLV  101 (403)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhcccC----C--CCcCCceeechHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence            344455688999999999999999997432    1  2468999999999999999999999999999999999999885


Q ss_pred             HhccCCCcccccCcchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccchHHHHHHHHH
Q 013959          118 VVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFV  197 (433)
Q Consensus       118 ~~~~~~~~~~~~~G~~Gi~~~~~~l~~~~g~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~l~~Ll~l  197 (433)
                      .-. +.+.++|++|.+|++++.+++++..|+++.++.++.++..+..   .+       .+-++|+++|.+|++|+++.+
T Consensus       102 ~~~-s~~~vTFLCG~aGv~avgAvia~~l~~~~~~~~~l~~f~~l~~---~~-------~dlp~ElLyGRaGYL~a~lfl  170 (403)
T KOG2787|consen  102 ASR-SSRRVTFLCGRAGVCAVGAVIAHKLGEEEELDDCLARFLSLRL---CS-------SDLPDELLYGRAGYLWACLFL  170 (403)
T ss_pred             hcc-ccCceEEECCCcchhHHHHHHHHHhccHHHHHHHHHHHHhccc---CC-------ccccHHHHhhHHHHHHHHHHH
Confidence            322 3467999999999999999999999999999999998887631   12       356799999999999999999


Q ss_pred             HhHhCCCCCchhhHHHHHHHHHhccccccccC-CCCCccccccccccCCCccchhHHHHHHhcCCC---ChhHHHHHHHH
Q 013959          198 NKHLGAGTLPNELLMPIVDAVLAGGRAGATAN-TACPLMYRWHGTRYWGAANGLAGILQVLLHFPL---SEEDAEDVKGT  273 (433)
Q Consensus       198 ~~~~~~~~~l~~~i~~~~~~ll~~~~~~~~~~-~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~l~~---~~~~~~~i~~~  273 (433)
                      .+..+.+++.+..|..+++.|+..++.+++.. ..+|++|+|+++.|+|.|||.+||+++|+.-.+   .+...+.++.+
T Consensus       171 Nk~ig~~ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~L~~d~~~~~~dVK~s  250 (403)
T KOG2787|consen  171 NKYIGQETIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMDPTLKVDQPALLKDVKGS  250 (403)
T ss_pred             HhhcCCCcCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhCCCCCCcchhHHHhhhhH
Confidence            99999999999999999999999998877654 368999999999999999999999999998664   23458999999


Q ss_pred             HHHHHhccCCCCCCCCCCCCCCCCcccccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHcCCCCC-Ccccc
Q 013959          274 LRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKK-VGLAD  352 (433)
Q Consensus       274 l~~l~~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~~g~~~~-~~LCH  352 (433)
                      ++|++++++| .||+|.+.+++.+.+++||||+||+++.+.++++  +++ .++|++.+.++++.+|++|++++ +++||
T Consensus       251 ldym~~~rfp-sGNyP~s~~~~~drLVhWcHGApGv~~~L~kAy~--VF~-Eekyl~aa~ecadvVW~rGlLkkg~Gich  326 (403)
T KOG2787|consen  251 LDYMIQNRFP-SGNYPSSEGNKRDRLVHWCHGAPGVAYTLAKAYQ--VFK-EEKYLEAAMECADVVWKRGLLKKGVGICH  326 (403)
T ss_pred             HHHHHHccCC-CCCCCcccCCCcceeeeeccCCchHHHHHHHHHH--Hhh-HHHHHHHHHHHHHHHHHhhhhhcCCcccc
Confidence            9999999999 9999999888888899999999999999999999  999 99999999999999999999887 99999


Q ss_pred             cchhHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhhhcccCCcCCCCCCCcccccHHHHHHHHHHccCcccCCCCCCC
Q 013959          353 GAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYE  432 (433)
Q Consensus       353 G~aG~~~~Ll~~~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~gLm~G~aGig~~Llr~~~p~~~~fp~~~  432 (433)
                      |.+||+++||.+|++|+|.+|..||.+++++++++..+    -+.+.++.++|||+|+||.+|.|+++..|++++||+||
T Consensus       327 GvaGNaYvFLsLyRLT~d~kYlyRA~kFae~lld~~~~----~g~r~pDrpySLfeG~AG~v~~l~Dll~P~~arFP~~E  402 (403)
T KOG2787|consen  327 GVAGNAYVFLSLYRLTGDMKYLYRAKKFAEWLLDYGFS----HGCRTPDRPYSLFEGVAGTVYLLLDLLDPEQARFPGYE  402 (403)
T ss_pred             cccCchhhhHhHHHHcCcHHHHHHHHHHHHHHHhhhhh----ccCCCCCCChhHHhcccchhhHhhhhcChhhccCCcCc
Confidence            99999999999999999999999999999999997642    24467899999999999999999999999999999999


Q ss_pred             C
Q 013959          433 L  433 (433)
Q Consensus       433 ~  433 (433)
                      +
T Consensus       403 l  403 (403)
T KOG2787|consen  403 L  403 (403)
T ss_pred             C
Confidence            6

>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others Back     alignment and domain information
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms] Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
3e6u_A411 Crystal Structure Of Human Lancl1 Length = 411 3e-49
>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1 Length = 411 Back     alignment and structure 
Iteration: 1

 Score =  192 bits (488), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 188/363 (51%), Gaps = 28/363 (7%)
Query: 78  DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYA 137
           D T YTG  G A + L  Y++ G+   L L+   +    + +  + R +TFLCG  G  A
Sbjct: 70  DGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCL--TKRSITFLCGDAGPLA 127
Query: 138 IGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFV 197
           + AV+ ++M +  + +  +   + +   +  P  P E        +LYGR G+++A LFV
Sbjct: 128 VAAVLYHKMNNEKQAEDCITRLIHL--NKIDPHAPNE--------MLYGRIGYIYALLFV 177
Query: 198 NKHLGAGTLPNELLMPIVDAVLXX---XXXXXXXXXXCPLMYRWHGTRYWGAANGLAGIL 254
           NK+ G   +P   +  I + +L                PLMY W+   Y GAA+GLAGI 
Sbjct: 178 NKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIY 237
Query: 255 QVLLHFPLSEEDAED---VKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAI 311
             L+   L     +    VK ++ Y+   +FP SGNYP   G+ RD LV W HGA GV  
Sbjct: 238 YYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFP-SGNYPPCIGDNRDLLVHWCHGAPGVIY 296
Query: 312 TLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKK-VGLADGAAGNAYAFLSLYRLTGE 370
            L +A +V  F  ++   DA  +  +V+W+ GL+KK  GL  G+AGNAYAFL+LY LT +
Sbjct: 297 MLIQAYKV--FREEKYLCDA-YQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQD 353
Query: 371 TIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPG 430
             Y+ RA  F+ +     ++       R  D  +SLF+G+AGT     DLL P  ARFP 
Sbjct: 354 MKYLYRACKFAEWCLEYGEH-----GCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPA 408
Query: 431 YEL 433
           +EL
Sbjct: 409 FEL 411

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 3e-88
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 5e-56
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Length = 411 Back     alignment and structure
 Score =  273 bits (699), Expect = 3e-88
 Identities = 126/387 (32%), Positives = 193/387 (49%), Gaps = 34/387 (8%)

Query: 54  LKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIID 113
           +++ + ++     S          D T YTG  G A + L  Y++ G+   L L+   + 
Sbjct: 52  IRELLQQMERGLKSA------DPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVK 105

Query: 114 TCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPE 173
              + +    R +TFLCG  G  A+ AV+ ++M +  + +  +   + + +         
Sbjct: 106 QSLNCLTK--RSITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKIDP------ 157

Query: 174 EGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATAN---T 230
                   ++LYGR G+++A LFVNK+ G   +P   +  I + +L  G   A       
Sbjct: 158 ----HAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTA 213

Query: 231 ACPLMYRWHGTRYWGAANGLAGILQVLLHFPL---SEEDAEDVKGTLRYMMSNRFPQSGN 287
             PLMY W+   Y GAA+GLAGI   L+   L     +    VK ++ Y+   +FP SGN
Sbjct: 214 KSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFP-SGN 272

Query: 288 YPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKK 347
           YP   G+ RD LV W HGA GV   L +A +V     + ++   A +  +V+W+ GL+KK
Sbjct: 273 YPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVF---REEKYLCDAYQCADVIWQYGLLKK 329

Query: 348 -VGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSL 406
             GL  G+AGNAYAFL+LY LT +  Y+ RA  F+ +     ++       R  D  +SL
Sbjct: 330 GYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGEH-----GCRTPDTPFSL 384

Query: 407 FQGLAGTACIWFDLLEPVNARFPGYEL 433
           F+G+AGT     DLL P  ARFP +EL
Sbjct: 385 FEGMAGTIYFLADLLVPTKARFPAFEL 411
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Length = 409 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 100.0
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 100.0
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 99.92
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 99.82
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 97.68
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 97.67
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 97.54
3pmm_A382 Putative cytoplasmic protein; structural genomics, 97.53
3pmm_A382 Putative cytoplasmic protein; structural genomics, 97.41
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 97.4
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 97.29
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 97.02
1nc5_A373 Hypothetical protein YTER; structural genomics, he 96.89
1nc5_A373 Hypothetical protein YTER; structural genomics, he 96.61
3k11_A445 Putative glycosyl hydrolase; structural genomics, 96.42
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 96.38
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 94.84
3k11_A445 Putative glycosyl hydrolase; structural genomics, 94.8
3gt5_A 402 N-acetylglucosamine 2-epimerase; structural genomi 94.47
2gz6_A 388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 93.91
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 90.67
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 90.18
2zbl_A 421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 88.59
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 86.99
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
Probab=100.00  E-value=8.9e-60  Score=475.68  Aligned_cols=363  Identities=35%  Similarity=0.616  Sum_probs=302.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCccccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHhccCCC
Q 013959           45 ETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTR  124 (433)
Q Consensus        45 ~~~l~~A~~i~d~i~~~~~~~~~~~~~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~~~~  124 (433)
                      ++|....++....+++.+-...+     ...|++.++|+|.+||+|||+++++++++++|++.|.++++.+.+.+.  ..
T Consensus        42 ~~~~~~~~~~~~~ll~~~~~~~~-----~~~~~~~~lY~G~~Gia~~l~~l~~~t~d~~yl~~a~~~l~~~~~~l~--~~  114 (411)
T 3e6u_A           42 PEFSQRLTNKIRELLQQMERGLK-----SADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLT--KR  114 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT-----TSCTTCCCSSSSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCC--SC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcc-----cCCCCCCCeeeChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc--cc
Confidence            45555555555555554332222     225689999999999999999999999999999999999999887664  34


Q ss_pred             cccccCcchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCccccccchHHHHHHHHHHhHhCCC
Q 013959          125 HVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAG  204 (433)
Q Consensus       125 ~~~~~~G~~Gi~~~~~~l~~~~g~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~l~~Ll~l~~~~~~~  204 (433)
                      .+++++|.+|+++++..+++.+++++..+++++++.+..   ...       .+.++|+++|.||++++|+.+++.++++
T Consensus       115 ~~~~~~G~aG~l~~l~~ly~~~g~~~~a~~~~~~l~~~~---~~~-------~~~~~dll~G~AG~l~aLl~L~~~~~~~  184 (411)
T 3e6u_A          115 SITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLN---KID-------PHAPNEMLYGRIGYIYALLFVNKNFGVE  184 (411)
T ss_dssp             CCCTTTSTHHHHHHHHHHHHHTTCHHHHHHHHHHHHGGG---GGC-------TTCCSSTTTSHHHHHHHHHHHHHHHSSC
T ss_pred             CCccccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh---ccc-------ccCChhhhcCcHHHHHHHHHHHHHcCCc
Confidence            689999999999988889999998776677777665542   121       2346899999999999999999999999


Q ss_pred             CCchhhHHHHHHHHHhccccccccC---CCCCccccccccccCCCccchhHHHHHHhcCC--C-ChhHHHHHHHHHHHHH
Q 013959          205 TLPNELLMPIVDAVLAGGRAGATAN---TACPLMYRWHGTRYWGAANGLAGILQVLLHFP--L-SEEDAEDVKGTLRYMM  278 (433)
Q Consensus       205 ~~l~~~i~~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~l~--~-~~~~~~~i~~~l~~l~  278 (433)
                      .+++..+.++++.+++.++......   ...|++|.|+++.++|||||++||+++|++++  . ++++.+.++++++|++
T Consensus       185 ~~~~~~i~~i~~~ii~~g~~~~~~~~~~~~~pl~~~w~~~~~~G~aHG~aGI~~~Ll~~~~~~~~~~~~~~i~~~l~~l~  264 (411)
T 3e6u_A          185 KIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVC  264 (411)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHTTTTTTCSCCCCBTTBCBCSTTTSHHHHHHHHTCGGGCCCHHHHHHTHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhccccCCCCcceeecCccCCcccccHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Confidence            8887778889998887664332111   24678999999999999999999999999886  3 3557899999999999


Q ss_pred             hccCCCCCCCCCCCCCCCCcccccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHcCCC-CCCcccccchhH
Q 013959          279 SNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLV-KKVGLADGAAGN  357 (433)
Q Consensus       279 ~~~~~~~gnwp~~~~~~~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~~g~~-~~~~LCHG~aG~  357 (433)
                      +++.+ +||||+.+++..+.+++||||+|||+++++.+++  +++ ++++.+.++++++.+|++|+. +++|||||.+|+
T Consensus       265 ~~~~~-~g~wp~~~~~~~~~~~~wChG~~Gi~~~l~~~~~--~~~-~~~~~~~a~~~~~~~~~~g~~~~~~~lChG~aG~  340 (411)
T 3e6u_A          265 QLKFP-SGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYK--VFR-EEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGN  340 (411)
T ss_dssp             HTCCT-TSCCCSBTTCCCCCCCSSSSSHHHHHHHHHHHHH--HHC-CHHHHHHHHHHHHHHHHHCSBTTCSCSTTSHHHH
T ss_pred             Hhhcc-CCCCCCCCCcccCccccccCCcHHHHHHHHHHHH--HcC-CHHHHHHHHHHHHHHHhcCccCCCCceecChHHH
Confidence            98887 5899997755556678999999999999999999  998 999999999999999999974 469999999999


Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhhhcccCCcCCCCCCCcccccHHHHHHHHHHccCcccCCCCCCCC
Q 013959          358 AYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL  433 (433)
Q Consensus       358 ~~~Ll~~~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~gLm~G~aGig~~Llr~~~p~~~~fp~~~~  433 (433)
                      +++|+++++.|++++|+++|.+++++++++..     +..+.++.++|||+|+|||+++|+|+++|++++||+|||
T Consensus       341 ~~~ll~~~~~t~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~sL~~G~aGi~~~Ll~l~~p~~~~fp~~~~  411 (411)
T 3e6u_A          341 AYAFLTLYNLTQDMKYLYRACKFAEWCLEYGE-----HGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL  411 (411)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHTTTTS-----SCCCCCSSTTSTTTSHHHHHHHHHHHTSGGGCCCTTTCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-----ccCCCCCCCChhhccHHHHHHHHHHHcCCCcccCCCCCC
Confidence            99999999999999999999999998876432     123456778999999999999999999999999999997
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Back     alignment and structure
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 433
d2g0da1409 a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis 1e-42
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

 Score =  153 bits (386), Expect = 1e-42
 Identities = 50/375 (13%), Positives = 99/375 (26%), Gaps = 36/375 (9%)

Query: 78  DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRH-VTFLCGRGGIY 136
           + TL TGL G   +         ++         I+   S +        +   G  GI 
Sbjct: 30  ELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTYGLLTGSLYSGAAGIA 89

Query: 137 AIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALF 196
                +             LN ++E      +     E      YD++ G +G L   L 
Sbjct: 90  LSILHLREDDEKYKNLLDSLNRYIEYFVREKIEGFNLENITPPDYDVIEGLSGILSYLLL 149

Query: 197 VNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTAC------PLMYRWHGTRYWGAANGL 250
           +N       L   ++  + +         +    +              G    G A+GL
Sbjct: 150 INDEQYD-DLKILIINFLSNLTKENNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGL 208

Query: 251 AGILQVLLHFPL----SEEDAEDVKGTLRYMMSNRFPQSGN-------------YPVSEG 293
           AG+  +L +  +    +E     ++  +         +                      
Sbjct: 209 AGVGCILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIR 268

Query: 294 NPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVKK-VGLAD 352
                   W +G  G+++             +  F D A +  E   +  L      +  
Sbjct: 269 EASFIRDAWCYGGPGISLLYLYGGLA---LDNDYFVDKAEKILESAMQRKLGIDSYMICH 325

Query: 353 GAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAG 412
           G +G         RL     +      F+       +         G + G    +G++G
Sbjct: 326 GYSGLIEICSLFKRLLNTKKFDSYMEEFNVNSEQILEE-------YGDESGTGFLEGISG 378

Query: 413 TACIWFDLLEPVNAR 427
              +       +N  
Sbjct: 379 CILVLSKFEYSINFT 393

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
d2g0da1409 Nisin biosynthesis protein NisC {Lactococcus lacti 100.0
d2g0da1409 Nisin biosynthesis protein NisC {Lactococcus lacti 99.8
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 97.62
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 97.48
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 96.54
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 96.23
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 84.47
d2afaa1 411 Putative NAG isomerase YihS {Salmonella typhimuriu 80.14
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=5.4e-46  Score=373.66  Aligned_cols=340  Identities=14%  Similarity=0.094  Sum_probs=239.6

Q ss_pred             CCCCCccccChHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHhccC-CCcccccCcchHHHHHHHHHHHHhCC-hhHH
Q 013959           75 RGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDS-TRHVTFLCGRGGIYAIGAVVANRMGD-RSRR  152 (433)
Q Consensus        75 ~~~~~~LY~G~~Gial~l~~L~~~t~~~~y~~~a~~~i~~~~~~~~~~-~~~~~~~~G~~Gi~~~~~~l~~~~g~-~~~~  152 (433)
                      .+.+.+||+|.+||++||+++++.|++++|.+.|++.++.+.+.+... ....|+|+|.+|+++++..+++..++ +..+
T Consensus        27 ~~~~~sLy~G~~GiaL~l~~l~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~glf~G~~Gi~~~l~~~~~~~~~~~~~~  106 (409)
T d2g0da1          27 DFGELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTYGLLTGSLYSGAAGIALSILHLREDDEKYKNLL  106 (409)
T ss_dssp             CGGGGSTTTSHHHHHHHHHTTTTSTTHHHHHHHHHHHHHHHHHHHHHHCCSCCCTTTSHHHHHHHHGGGTTTCHHHHHHH
T ss_pred             CCCCCcccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCCCcceeCCHHHHHHHHHHHHhcchhhhHHH
Confidence            345679999999999999999999999999999999999988776432 24589999999987655443332111 0112


Q ss_pred             HHHHHHHHHHHHh--ccCCCCCCCCCCCCCccccccchHHHHHHHHHHhHhCCCCCchhhHHHHHHHHHhccccccccCC
Q 013959          153 DFFLNLFLEIAQE--RALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANT  230 (433)
Q Consensus       153 ~~~~~~i~~~~~~--~~l~~~~~~~~~~~~~D~l~G~aG~l~~Ll~l~~~~~~~~~l~~~i~~~~~~ll~~~~~~~~~~~  230 (433)
                      +...+.+...+.+  ...+...   ....++|+++|.||++++|+.+++...+     .....+.+.+.+..+....-..
T Consensus       107 ~~l~~~l~~~~~~~i~~~~~~~---~~~~~~D~l~G~aG~~~~LL~~~~~~~~-----~~~~~i~~~l~~~~~~~~~~~~  178 (409)
T d2g0da1         107 DSLNRYIEYFVREKIEGFNLEN---ITPPDYDVIEGLSGILSYLLLINDEQYD-----DLKILIINFLSNLTKENNGLIS  178 (409)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGG---CCHHHHSSSSSHHHHHHHHTTCCCGGGH-----HHHHHHHHHHHHTTSCCSSSCT
T ss_pred             HHHHHHHHHHHHHHHHHhhccc---cCCcccchhcccHHHHHHHHHhcccccc-----HHHHHHHHHHHHHHHhcccccc
Confidence            2222222222211  0111000   0224689999999999999987765443     2334444444432211110000


Q ss_pred             -CCC----ccc-----cccccccCCCccchhHHHHHHhcCC----CChhHHHHHHHHHHHHHhccCC--CCCCCCCCCC-
Q 013959          231 -ACP----LMY-----RWHGTRYWGAANGLAGILQVLLHFP----LSEEDAEDVKGTLRYMMSNRFP--QSGNYPVSEG-  293 (433)
Q Consensus       231 -~~~----~~~-----~~~~~~~~G~aHG~aGI~~~L~~l~----~~~~~~~~i~~~l~~l~~~~~~--~~gnwp~~~~-  293 (433)
                       ..+    ..+     .+.+..++|||||.|||+++|++++    .++...+.++++++++.+....  ...+||+.+. 
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~  258 (409)
T d2g0da1         179 LYIKSENQMSQSESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQFLWKDGLVA  258 (409)
T ss_dssp             TCBCGGGSSSHHHHHHCTTCBEECCTTTSHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCCCGGGTTCCCSEECH
T ss_pred             cccccccccccchhcccCCCCCccchhhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHhhhccccCCCCCcCcc
Confidence             000    000     0123457999999999999988764    2566788899999988775443  3457998552 


Q ss_pred             ----------CCCCcccccccCChhHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHcCCCC-CCcccccchhHHHHHH
Q 013959          294 ----------NPRDKLVQWSHGATGVAITLCKASQVSVFPSDREFRDAAIEAGEVLWKNGLVK-KVGLADGAAGNAYAFL  362 (433)
Q Consensus       294 ----------~~~~~~~~WChG~~Gi~l~~l~~~~~~~~~~~~~~~~~a~~a~~~~~~~g~~~-~~~LCHG~aG~~~~Ll  362 (433)
                                +....+++||||+|||+++|+.+++  +++ ++++.+.+.++++.++++++.. ++|||||.+|++++|+
T Consensus       259 ~~~~~~~~~~~~~~~~~~WChG~~Gi~la~~~~~~--~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~LCHG~aG~~~~l~  335 (409)
T d2g0da1         259 DELKKEKVIREASFIRDAWCYGGPGISLLYLYGGL--ALD-NDYFVDKAEKILESAMQRKLGIDSYMICHGYSGLIEICS  335 (409)
T ss_dssp             HHHHHTSCCSCCSCCCCCSSSSHHHHHHHHHHHHH--HTT-CHHHHHHHHHHHHHHHHHCTTCCSCCTTTSHHHHHHHHH
T ss_pred             cccccccccccCcccccccCCCchHHHHHHHHHHH--HcC-CHHHHHHHHHHHHHHHHhccCCCCCcccCcHHHHHHHHH
Confidence                      1123467999999999999999999  999 9999999999999999999854 6999999999999999


Q ss_pred             HHHHHhCChHHHHHHHHHHHHHHhhhhhhcccCCcCCCCCCCcccccHHHHHHHHHHccCcccC-----CCCCCC
Q 013959          363 SLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNA-----RFPGYE  432 (433)
Q Consensus       363 ~~~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~gLm~G~aGig~~Llr~~~p~~~-----~fp~~~  432 (433)
                      .+++.++++++.+++.++.........       ...+..++|||+|+|||+|+|+|+.+|.+.     .|.++|
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~gl~~G~aGi~~~Ll~~~~~~~~~~W~~~~L~~~  403 (409)
T d2g0da1         336 LFKRLLNTKKFDSYMEEFNVNSEQILE-------EYGDESGTGFLEGISGCILVLSKFEYSINFTYWRQALLLFD  403 (409)
T ss_dssp             HHHHHHCCCTTHHHHHHHHHTHHHHHH-------SCCSTTCSSTTTSHHHHHHHHHHHHSCCCSSCGGGGGTCCT
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhcc-------cCCCCCCCchhccHHHHHHHHHHhcCCCCCCCcchhhcccc
Confidence            999999999999888877665544322       124567899999999999999999999873     255554
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure