Citrus Sinensis ID: 013964

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
MAEKEESQNPTPPPPVTETEQPPSTATAVKEPAVTSQTEEQPPAAPAVENRSLAAMMEKEASAPEKTKEDVVVAADSVEKVDEKEKQPPPVQPEEPKIPQTLISFKEESNVIADLSDSERKALQELKQLVQEALNNRHFTSPKEEEKEKQPPPSSDAPKTDGPSSESDKSTEIKPPQEQQAPAEVAPPPPQPPAEEEVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILSLPILYVVALLFGWLSSRFNY
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEccccccEEEEEcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHcccccHHHcccEEEEcccccHHHHHHHcccccccHHHHHHHHccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHccccccccEEEEEEcccEcHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHccccccEEEEEEEccccccccHHHHHHHHHHHHHHccccccHHHHHEEEEEccHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHcccHHcccHHHHHHHHHHHHHccccc
maekeesqnptppppvteteqppstatavkepavtsqteeqppaapavenRSLAAMMEKeasapektkeDVVVAADSvekvdekekqpppvqpeepkipqtlisfkeesnviadLSDSERKALQELKQLVQEALNnrhftspkeeekekqpppssdapktdgpssesdksteikppqeqqapaevappppqppaeeevsiwgvpllkddrtDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALlnedlgddlEKVVFmhgfdrdghpvcynvygefqnkqlyAKTFSDEEKRMKFLRWRIQFLERSIRKlnfrpggvstIFQVndlknspgpgkrELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMispfmtqrtkskfvfagpskstETLFKLVNIILSLPILYVVALLFGWLSSRFNY
maekeesqnptppppvteteqppsTATAVKEPavtsqteeqppaapaVENRSLAAMMEKeasapektkedvVVAADSVekvdekekqpppvqpeepkipqTLISFKEESNVIADLSDSERKALQELKQLVQEALNnrhftspkeeekekqpppssdapktdgpSSESDKSTEIKPPQEQQAPAEVAPPPPQPPAEEEVSIWGVPLLKDDRTDVILLKflrardfkvrdaFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSirklnfrpggvstifqvndlknspgPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILSLPILYVVALLFGWLSSRFNY
MAEKeesqnptppppvteteqppstATAVKEPAVTSQTEEQPPAAPAVENRSLAAMMEKEASAPEKTKEDVVVAADSVEKVDekekqpppvqpeepkipqTLISFKEESNVIADLSDSERKALQELKQLVQEALNNRHFTspkeeekekqpppssDAPKTDGPSSESDKSTEIKppqeqqapaevappppqppaeeevSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILSLPILYVVALLFGWLSSRFNY
*****************************************************************************************************************************************************************************************************VSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDL**********LRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILSLPILYVVALLFGWLS*****
******************************************************************************************************************************************************************************************************SIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILSLPILYVVALLFGWLSS**NY
**********************************************AVENRSLAAMM*************VVVAA*******************EPKIPQTLISFKEESNVIADLSDSERKALQELKQLVQEALNNRHF*********************************************************EVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILSLPILYVVALLFGWLSSRFNY
***************************************************************************************************************************QELKQLV****************************************TEIKPPQEQ**********PQPPAEEEVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILSLPILYVVALLFGWLSSRFNY
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MAEKEESQNPTPPPPVTETEQPPSTATAVKEPAVTSQTEEQPPAAPAVENRSLAAMMEKEASAPEKTKEDVVVAADSVEKVDEKEKQPPPVQPEEPKIPQTLISFKEESNVxxxxxxxxxxxxxxxxxxxxxxxxxRHFTSPKEEEKEKQPPPSSDAPKTDGPSSESDKSTEIKPPQEQQAPAEVAPPPPQPPAEEEVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILSLPILYVVALLFGWLSSRFNY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query433 2.2.26 [Sep-21-2011]
Q56Z59 490 Patellin-3 OS=Arabidopsis yes no 0.734 0.648 0.540 1e-111
Q9M0R2 668 Patellin-5 OS=Arabidopsis no no 0.639 0.414 0.552 1e-106
Q56ZI2683 Patellin-2 OS=Arabidopsis no no 0.482 0.306 0.572 8e-73
Q9SCU1 409 Patellin-6 OS=Arabidopsis no no 0.475 0.503 0.570 5e-70
Q94C59 540 Patellin-4 OS=Arabidopsis no no 0.484 0.388 0.518 5e-68
Q56WK6573 Patellin-1 OS=Arabidopsis no no 0.473 0.357 0.528 7e-63
Q6C9R9362 Phosphatidylinositol tran yes no 0.411 0.491 0.308 1e-20
A5DEQ9336 Phosphatidylinositol tran N/A no 0.427 0.550 0.331 3e-20
A3LPR9328 Phosphatidylinositol tran yes no 0.431 0.570 0.312 3e-16
Q6BWE5344 Phosphatidylinositol tran yes no 0.521 0.656 0.275 8e-16
>sp|Q56Z59|PATL3_ARATH Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2 Back     alignment and function desciption
 Score =  402 bits (1034), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/394 (54%), Positives = 256/394 (64%), Gaps = 76/394 (19%)

Query: 16  VTETEQPPSTATAVKEPAVTSQTEEQPPAAPAVENRSLAAMMEKEASAPEKTKEDVVVAA 75
           VTET  PP TA    +P   +  E  PP     E     A  EK+    E ++++V    
Sbjct: 44  VTET-NPPETADTTTKPEEETAAEHHPPTVTETE----TASTEKQEVKDEASQKEVAEEK 98

Query: 76  DSVEKVDEKEKQPPPVQPEEPKIPQTLISFKEESNVIADLSDSERKALQELKQLVQEALN 135
            S+                   IPQ L SFKEES+ ++DLS+SE+K+L ELK LV+EAL+
Sbjct: 99  KSM-------------------IPQNLGSFKEESSKLSDLSNSEKKSLDELKHLVREALD 139

Query: 136 NRHFTSPKEEEKEKQPPPSSDAPKTDGPSSESDKSTEIKPPQEQQAPAEVAPPPPQPPAE 195
           N  F                    T+ P                                
Sbjct: 140 NHQF--------------------TNTP-------------------------------- 147

Query: 196 EEVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGD 255
           EEV IWG+PLL+DDR+DV+LLKFLRAR+FKV+D+F M+KNTI+WRK+F I+ L+ EDL D
Sbjct: 148 EEVKIWGIPLLEDDRSDVVLLKFLRAREFKVKDSFAMLKNTIKWRKEFKIDELVEEDLVD 207

Query: 256 DLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKL 315
           DL+KVVFMHG DR+GHPVCYNVYGEFQNK+LY KTFSDEEKR  FLR RIQFLERSIRKL
Sbjct: 208 DLDKVVFMHGHDREGHPVCYNVYGEFQNKELYNKTFSDEEKRKHFLRTRIQFLERSIRKL 267

Query: 316 NFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLA 375
           +F  GGVSTIFQVND+KNSPG GK+ELR ATKQA++LLQDNYPEFV KQ FINVPWWYL 
Sbjct: 268 DFSSGGVSTIFQVNDMKNSPGLGKKELRSATKQAVELLQDNYPEFVFKQAFINVPWWYLV 327

Query: 376 FHTMISPFMTQRTKSKFVFAGPSKSTETLFKLVN 409
           F+T+I PFMT R+KSK VFAGPS+S ETLFK ++
Sbjct: 328 FYTVIGPFMTPRSKSKLVFAGPSRSAETLFKYIS 361
Carrier protein that may be involved in membrane-trafficking events associated with cell plate formation during cytokinesis. Binds to some hydrophobic molecules such as phosphoinositides and promotes their transfer between the different cellular sites.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9M0R2|PATL5_ARATH Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2 Back     alignment and function description
>sp|Q56ZI2|PATL2_ARATH Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 SV=2 Back     alignment and function description
>sp|Q9SCU1|PATL6_ARATH Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1 Back     alignment and function description
>sp|Q94C59|PATL4_ARATH Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2 Back     alignment and function description
>sp|Q56WK6|PATL1_ARATH Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 SV=2 Back     alignment and function description
>sp|Q6C9R9|SFH5_YARLI Phosphatidylinositol transfer protein SFH5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SFH5 PE=3 SV=1 Back     alignment and function description
>sp|A5DEQ9|SFH5_PICGU Phosphatidylinositol transfer protein SFH5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=SFH5 PE=3 SV=2 Back     alignment and function description
>sp|A3LPR9|SFH5_PICST Phosphatidylinositol transfer protein SFH5 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=SFH5 PE=3 SV=2 Back     alignment and function description
>sp|Q6BWE5|SFH5_DEBHA Phosphatidylinositol transfer protein SFH5 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SFH5 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
255561576 587 Patellin-5, putative [Ricinus communis] 0.852 0.628 0.651 1e-136
224145127446 predicted protein [Populus trichocarpa] 0.667 0.647 0.682 1e-128
147859031 591 hypothetical protein VITISV_013162 [Viti 0.833 0.610 0.620 1e-127
359493327530 PREDICTED: patellin-3-like [Vitis vinife 0.833 0.681 0.620 1e-127
449441808530 PREDICTED: patellin-3-like [Cucumis sati 0.842 0.688 0.575 1e-125
356512904 539 PREDICTED: patellin-3-like [Glycine max] 0.690 0.554 0.603 1e-113
224136025423 predicted protein [Populus trichocarpa] 0.625 0.640 0.615 1e-110
449533230468 PREDICTED: patellin-3-like, partial [Cuc 0.725 0.670 0.564 1e-110
15218383490 patellin-3 [Arabidopsis thaliana] gi|780 0.734 0.648 0.540 1e-109
297841957497 SEC14 cytosolic factor family protein [A 0.618 0.539 0.619 1e-108
>gi|255561576|ref|XP_002521798.1| Patellin-5, putative [Ricinus communis] gi|223539011|gb|EEF40608.1| Patellin-5, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 262/402 (65%), Positives = 305/402 (75%), Gaps = 33/402 (8%)

Query: 49  ENRSLAAMMEKEASAP------------EKTKEDVVVAADSVEKVDEKEKQPPPVQPEEP 96
           E++SLAAMMEKE S              EKT+  V      V++VD   K+    + ++ 
Sbjct: 64  ESKSLAAMMEKEESQSSPPLSSLEEKNDEKTESLVTKEEVVVDEVDVAGKEKQSEEQQQQ 123

Query: 97  KIPQTLISFKEESNVIADLSDSERKALQELKQLVQEALNNRHFTSP-------KEEEKEK 149
           K+PQTL+SFKEESN++ADLS+SE+KAL E K LVQEALN   F+S        KEEEK  
Sbjct: 124 KVPQTLVSFKEESNIVADLSESEKKALHEFKNLVQEALNTHQFSSSPPPSPPQKEEEKTA 183

Query: 150 QPPPSSDAPKTDGPSSESDKSTEIKPP--QEQQAPAEVAPPPPQ--------PPAE---E 196
           Q  P+     T+   S+SD STEIK P  QE Q P     P  +        P  E   E
Sbjct: 184 QKTPAEATSTTEVSVSKSDVSTEIKTPTDQEYQEPKVEENPSKETQETKQEDPKVESLPE 243

Query: 197 EVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDD 256
           E+SIWG+PLLKDDR+DVILLKFLRARDFKV+DAFVMIKNTI+WRK+F I+ L++EDLGDD
Sbjct: 244 EISIWGIPLLKDDRSDVILLKFLRARDFKVKDAFVMIKNTIRWRKEFKIDELIDEDLGDD 303

Query: 257 LEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLN 316
           LEK+VFMHG DR+GHPVCYNVYGEFQNK+LY K F+DEEKRMKFLRWRIQFLERSIRKL+
Sbjct: 304 LEKIVFMHGHDREGHPVCYNVYGEFQNKELYQKAFADEEKRMKFLRWRIQFLERSIRKLD 363

Query: 317 FRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAF 376
           F PGG+STIFQVNDLKNSPGPGK+ELR+AT++ALQLLQDNYPEFVAKQVFINVPWWYLAF
Sbjct: 364 FSPGGISTIFQVNDLKNSPGPGKKELRLATRKALQLLQDNYPEFVAKQVFINVPWWYLAF 423

Query: 377 HTMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILSLPILY 418
           +TMISPFMTQRTKSKFVFAGPSKS ETLFK ++    +PI Y
Sbjct: 424 YTMISPFMTQRTKSKFVFAGPSKSPETLFKYIS-AEQVPIQY 464

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224145127|ref|XP_002325536.1| predicted protein [Populus trichocarpa] gi|222862411|gb|EEE99917.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147859031|emb|CAN80423.1| hypothetical protein VITISV_013162 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359493327|ref|XP_002265124.2| PREDICTED: patellin-3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449441808|ref|XP_004138674.1| PREDICTED: patellin-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356512904|ref|XP_003525154.1| PREDICTED: patellin-3-like [Glycine max] Back     alignment and taxonomy information
>gi|224136025|ref|XP_002327362.1| predicted protein [Populus trichocarpa] gi|222835732|gb|EEE74167.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449533230|ref|XP_004173579.1| PREDICTED: patellin-3-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|15218383|ref|NP_177361.1| patellin-3 [Arabidopsis thaliana] gi|78099067|sp|Q56Z59.2|PATL3_ARATH RecName: Full=Patellin-3 gi|12323663|gb|AAG51796.1|AC067754_12 cytosolic factor, putative; 19554-17768 [Arabidopsis thaliana] gi|332197162|gb|AEE35283.1| patellin-3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297841957|ref|XP_002888860.1| SEC14 cytosolic factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297334701|gb|EFH65119.1| SEC14 cytosolic factor family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
TAIR|locus:2141563 668 AT4G09160 "AT4G09160" [Arabido 0.487 0.315 0.772 3.4e-101
TAIR|locus:2207016 490 AT1G72160 "AT1G72160" [Arabido 0.503 0.444 0.748 5.3e-100
TAIR|locus:2009502683 PATL2 "PATELLIN 2" [Arabidopsi 0.475 0.301 0.566 1.2e-73
TAIR|locus:2204594 540 AT1G30690 [Arabidopsis thalian 0.491 0.394 0.522 4.2e-69
TAIR|locus:2098282 409 AT3G51670 "AT3G51670" [Arabido 0.498 0.528 0.556 6.8e-69
TAIR|locus:2207001573 PATL1 "AT1G72150" [Arabidopsis 0.473 0.357 0.528 6.1e-66
DICTYBASE|DDB_G0270022 444 DDB_G0270022 "cellular retinal 0.461 0.450 0.327 6.7e-26
SGD|S000004684304 SEC14 "Phosphatidylinositol/ph 0.441 0.628 0.29 7.5e-15
CGD|CAL0005528320 orf19.4897 [Candida albicans ( 0.424 0.575 0.289 8.5e-15
POMBASE|SPAC3H8.10286 spo20 "sec14 cytosolic factor 0.441 0.667 0.295 1.2e-14
TAIR|locus:2141563 AT4G09160 "AT4G09160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 885 (316.6 bits), Expect = 3.4e-101, Sum P(3) = 3.4e-101
 Identities = 163/211 (77%), Positives = 187/211 (88%)

Query:   199 SIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLE 258
             SIWGVPLLKDDRTDV+LLKFLRARDFK ++A+ M+  T+QWR DF IE LL+E+LGDDL+
Sbjct:   326 SIWGVPLLKDDRTDVVLLKFLRARDFKPQEAYSMLNKTLQWRIDFNIEELLDENLGDDLD 385

Query:   259 KVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFR 318
             KVVFM G D++ HPVCYNVYGEFQNK LY KTFSDEEKR +FLRWRIQFLE+SIR L+F 
Sbjct:   386 KVVFMQGQDKENHPVCYNVYGEFQNKDLYQKTFSDEEKRERFLRWRIQFLEKSIRNLDFV 445

Query:   319 PGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHT 378
              GGVSTI QVNDLKNSPGPGK ELR+ATKQAL LLQDNYPEFV+KQ+FINVPWWYLAF+ 
Sbjct:   446 AGGVSTICQVNDLKNSPGPGKTELRLATKQALHLLQDNYPEFVSKQIFINVPWWYLAFYR 505

Query:   379 MISPFMTQRTKSKFVFAGPSKSTETLFKLVN 409
             +ISPFM+QR+KSK VFAGPS+S ETL K ++
Sbjct:   506 IISPFMSQRSKSKLVFAGPSRSAETLLKYIS 536
GO:0005215 "transporter activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:2207016 AT1G72160 "AT1G72160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009502 PATL2 "PATELLIN 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204594 AT1G30690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098282 AT3G51670 "AT3G51670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207001 PATL1 "AT1G72150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270022 DDB_G0270022 "cellular retinaldehyde-binding/triple function domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
SGD|S000004684 SEC14 "Phosphatidylinositol/phosphatidylcholine transfer protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0005528 orf19.4897 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
POMBASE|SPAC3H8.10 spo20 "sec14 cytosolic factor family Sec14" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q56Z59PATL3_ARATHNo assigned EC number0.54060.73440.6489yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XIX.1965.1
hypothetical protein (372 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 2e-32
smart00516158 smart00516, SEC14, Domain in homologues of a S 1e-24
pfam00650152 pfam00650, CRAL_TRIO, CRAL/TRIO domain 1e-22
pfam0376548 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma 5e-08
smart0110048 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom 8e-07
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 1e-04
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 4e-04
PRK14948620 PRK14948, PRK14948, DNA polymerase III subunits ga 7e-04
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 0.001
PRK08119382 PRK08119, PRK08119, flagellar motor switch protein 0.002
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 0.004
PRK08691709 PRK08691, PRK08691, DNA polymerase III subunits ga 0.004
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information 
 Score =  120 bits (302), Expect = 2e-32
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 14/163 (8%)

Query: 256 DLEKVVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKL 315
           +L KV ++ G D++G PV     G        +K+   EE     LR+ +  LE+ +++ 
Sbjct: 6   ELGKVGYLGGRDKEGRPVLIIRAGNK----DLSKSLDSEE----LLRYLVYTLEKLLQED 57

Query: 316 NFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLA 375
           + +  G   I    DLK              K+ L++LQDNYPE +     IN PW++  
Sbjct: 58  DEQVEGFVVII---DLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKV 114

Query: 376 FHTMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILSLPILY 418
              ++ PF++++T+ K VF G  K  E L K ++    LP  Y
Sbjct: 115 LWKIVKPFLSEKTRKKIVFLGSDK--EELLKYIDKE-QLPEEY 154

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 433
KOG1470324 consensus Phosphatidylinositol transfer protein PD 100.0
KOG1471317 consensus Phosphatidylinositol transfer protein SE 100.0
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 99.96
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 99.94
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.92
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.47
PF0376555 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr 98.8
KOG4406 467 consensus CDC42 Rho GTPase-activating protein [Sig 97.95
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-39  Score=322.50  Aligned_cols=206  Identities=31%  Similarity=0.548  Sum_probs=181.1

Q ss_pred             CCCHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHcCCCc-cCccchhhhc-cceEeeeccCCCCCeEEEEEcCCcChhhh
Q 013964          209 DRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEA-LLNEDLGDDL-EKVVFMHGFDRDGHPVCYNVYGEFQNKQL  286 (433)
Q Consensus       209 ~~dD~~LLRFLRArkfdVekA~~mLk~~l~WRk~~~iD~-i~~e~~~~el-~~~~~~~G~Dk~GrPV~~~r~g~~d~k~l  286 (433)
                      .++|.+||||||||+|||++|.+||.+++.||+.+++.. +..+.+..++ .|++|++|+|+.||||+|+++..-.    
T Consensus        46 ~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~~Ev~~e~~tGK~yi~G~D~~gRPVl~~~~~~~~----  121 (324)
T KOG1470|consen   46 WCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEADEVAAELETGKAYILGHDKDGRPVLYLRPRPHR----  121 (324)
T ss_pred             cCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCHHHHHHHhhcCcEEEecccCCCCeEEEEecCCCC----
Confidence            458999999999999999999999999999999999988 5555555454 6889999999999999999654211    


Q ss_pred             hhhccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEEEeeCCCCCCCCchhHHHHHHHHHHHHhhhcccccceEEE
Q 013964          287 YAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGGVSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVF  366 (433)
Q Consensus       287 ~~~t~~d~e~~~d~lr~~i~l~E~~ir~l~~~~~~i~~itvIiDlkg~sgls~~~L~~~~k~il~llq~nYPErL~rI~I  366 (433)
                       +++    .+...+.|+++|+||.++..|   +.++.++++|+|++|+| +++.+ .++.+.++.+||+||||||+..+|
T Consensus       122 -qn~----~t~~~~~r~~Vy~mE~Ai~~l---p~~qe~~~~L~D~~~fs-~sN~d-~~~~k~~~~~lq~hYPErLg~a~l  191 (324)
T KOG1470|consen  122 -QNT----KTQKELERLLVYTLENAILFL---PPGQEQFVWLFDLTGFS-MSNPD-IKFLKELLHILQDHYPERLGKALL  191 (324)
T ss_pred             -CCC----CCHHHHHHHHHHHHHHHHHhC---CCCcceEEEEEecccCc-ccCCC-cHHHHHHHHHHHHhChHHhhhhhh
Confidence             112    246889999999999998665   78899999999999985 55666 678999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHhhcCCHhhhcceEEeCCCCChhHHhhhCCCCCCCcccCCCCcCCCCccCCCC
Q 013964          367 INVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILSLPILYVVALLFGWLSSRFN  432 (433)
Q Consensus       367 INaP~~f~~vw~lVKpFLs~kTr~KI~ilg~~~~~e~L~k~Id~~e~LP~eyGGt~~~~~~~~~y~  432 (433)
                      +|+||+|..+|++|||||++.|++||+|+.+   ...|.+|||+ ++||..|||+..+.|.+++|.
T Consensus       192 ~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~---~~~l~~~~d~-~~l~s~~GG~~~~~y~~e~~~  253 (324)
T KOG1470|consen  192 VNAPWIFQPFWKIIKPFLDPKTASKVKFVEP---KDDLSEYFDE-SQLPSLFGGKLLFEYTHEEYW  253 (324)
T ss_pred             cCChHHHHHHHHHhhhccChhhhceeEEecC---hhHHHhhCCc-cccchhhCCCcccccCCcchh
Confidence            9999999999999999999999999999986   4569999999 999999999999999998863

>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
4fmm_A360 Dimeric Sec14 Family Homolog 3 From Saccharomyces C 1e-14
1aua_A296 Phosphatidylinositol Transfer Protein Sec14p From S 2e-14
3b74_A320 Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co 1e-11
3q8g_A320 Resurrection Of A Functional Phosphatidylinositol T 2e-11
1olm_A 403 Supernatant Protein Factor In Complex With Rrr-Alph 1e-09
1olm_E 403 Supernatant Protein Factor In Complex With Rrr-Alph 1e-09
1oip_A278 The Molecular Basis Of Vitamin E Retention: Structu 9e-08
1o6u_A 403 The Crystal Structure Of Human Supernatant Protein 3e-07
1r5l_A262 Crystal Structure Of Human Alpha-tocopherol Transfe 2e-06
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces Cerevisiae Presents Some Novel Features Of Structure That Lead To A Surprising "dimer- Monomer" State Change Induced By Substrate Binding Length = 360 Back     alignment and structure 
Iteration: 1

 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 33/204 (16%)
Query: 211 TDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLE-----------K 259
           T    L++LRA  + ++D    I  T+ WR++FGI + L E+ GD +            K
Sbjct: 86  TRECFLRYLRATKWVLKDCIDRITMTLAWRREFGI-SHLGEEHGDKITADLVAVENESGK 144
Query: 260 VVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRP 319
            V + G++ D  P+ Y   G  QN     KT   + + + F+      LER I   +F P
Sbjct: 145 QVIL-GYENDARPILYLKPGR-QN----TKTSHRQVQHLVFM------LERVI---DFMP 189
Query: 320 GGVSTIFQVNDLKNSPG----PGKRELRI--ATKQALQLLQDNYPEFVAKQVFINVPWWY 373
            G  ++  + D K+ P     PG  ++      K+ L +LQ +YPE + K +  N+PW  
Sbjct: 190 AGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLA 249
Query: 374 LAFHTMISPFMTQRTKSKFVFAGP 397
             F  +I PF+   T+ K VF  P
Sbjct: 250 WTFLKLIHPFIDPLTREKLVFDEP 273
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296 Back     alignment and structure
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320 Back     alignment and structure
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320 Back     alignment and structure
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278 Back     alignment and structure
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor Length = 403 Back     alignment and structure
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 1e-58
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 6e-56
1olm_A 403 SEC14-like protein 2; lipid-binding protein, chole 5e-52
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 8e-30
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 7e-27
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Back     alignment and structure
 Score =  193 bits (491), Expect = 1e-58
 Identities = 64/269 (23%), Positives = 106/269 (39%), Gaps = 25/269 (9%)

Query: 148 EKQPPPSSDAPKTDGPSSESDKSTEIKPPQEQQAPAEVAPPPPQPPAEEEVSIW-GVPLL 206
           +++       P+   P +       +   QE+              A  E+         
Sbjct: 1   QQEKEFLESYPQNCPPDALPGTPGNLDSAQEK--------------ALAELRKLLEDAGF 46

Query: 207 KDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGDDLEKVV----- 261
            +   D  LL+FLRAR F V+ A  M +N  +WRKD+G + +L +   D+   +      
Sbjct: 47  IERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQ 106

Query: 262 FMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFRPGG 321
           + H  D+DG PV +   G     ++   T   EE+ +K L W  + + +       R  G
Sbjct: 107 YYHKTDKDGRPVYFEELGAVNLHEMNKVT--SEERMLKNLVWEYESVVQYRLPACSRAAG 164

Query: 322 --VSTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTM 379
             V T   + DLK         +    ++A  + Q+ YPE + K   IN P+ +     +
Sbjct: 165 HLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRL 224

Query: 380 ISPFMTQRTKSKFVFAGPSKSTETLFKLV 408
             PF+   T SK    G S   + L K +
Sbjct: 225 FKPFLDPVTVSKIFILG-SSYQKELLKQI 252
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262 Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 100.0
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 100.0
1olm_A 403 SEC14-like protein 2; lipid-binding protein, chole 100.0
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 100.0
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 100.0
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 99.03
3peg_A 290 Neurofibromin; SEC14 domain, pleckstrin homology d 98.81
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure
Probab=100.00  E-value=1.5e-47  Score=383.27  Aligned_cols=244  Identities=25%  Similarity=0.384  Sum_probs=204.7

Q ss_pred             CcccccCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCchhhhccCCCCCCCCCCCCCCCCCCCCCCcCCCCCcccCCCC
Q 013964          104 SFKEESNVIADLSDSERKALQELKQLVQEALNNRHFTSPKEEEKEKQPPPSSDAPKTDGPSSESDKSTEIKPPQEQQAPA  183 (433)
Q Consensus       104 s~~~~s~~~~~L~~~q~~aL~efr~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (433)
                      +....+|++|+||+.|+++|++||+.|++..                                                 
T Consensus        24 ~~~~~~g~~~~lt~~q~~~l~~lR~~l~~~~-------------------------------------------------   54 (320)
T 3q8g_A           24 SPNALPGTPGNLTKEQEEALLQFRSILLEKN-------------------------------------------------   54 (320)
T ss_dssp             CTTSCTTSTTCCCHHHHHHHHHHHHHHHHTT-------------------------------------------------
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHhcC-------------------------------------------------
Confidence            3455799999999999999999999998651                                                 


Q ss_pred             CCCCCCCCCCCccchhhcCCCCCCCCCCHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHcCCCccCccchhh--------
Q 013964          184 EVAPPPPQPPAEEEVSIWGVPLLKDDRTDVILLKFLRARDFKVRDAFVMIKNTIQWRKDFGIEALLNEDLGD--------  255 (433)
Q Consensus       184 ~~~~~~~~~~~~~~~~~wgvpll~~~~dD~~LLRFLRArkfdVekA~~mLk~~l~WRk~~~iD~i~~e~~~~--------  255 (433)
                                            +....||.+||||||||+|||++|.+||+++++||+++++|.+..+...+        
T Consensus        55 ----------------------~~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~  112 (320)
T 3q8g_A           55 ----------------------YKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKER  112 (320)
T ss_dssp             ----------------------CCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHH
T ss_pred             ----------------------CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHH
Confidence                                  11356899999999999999999999999999999999999877543211        


Q ss_pred             -hccc--eEeeeccCCCCCeEEEEEcCCcChhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHh----c-cCCCCeeEEEE
Q 013964          256 -DLEK--VVFMHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKL----N-FRPGGVSTIFQ  327 (433)
Q Consensus       256 -el~~--~~~~~G~Dk~GrPV~~~r~g~~d~k~l~~~t~~d~e~~~d~lr~~i~l~E~~ir~l----~-~~~~~i~~itv  327 (433)
                       .+.+  ..|++|+|++||||+|+++|++|.+++++.+     +.+++++++++.+|++++..    . .....++++++
T Consensus       113 ~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~-----~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~  187 (320)
T 3q8g_A          113 IKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKIT-----TEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCT  187 (320)
T ss_dssp             HHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHC-----CHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEE
T ss_pred             HHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccC-----CHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEE
Confidence             2222  3578999999999999999999999887654     35788999999999987521    1 11235788999


Q ss_pred             EeeCCCCCCCCchhHHHHHHHHHHHHhhhcccccceEEEEeCCHHHHHHHHHHhhcCCHhhhcceEEeCCCCChhHHhhh
Q 013964          328 VNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKL  407 (433)
Q Consensus       328 IiDlkg~sgls~~~L~~~~k~il~llq~nYPErL~rI~IINaP~~f~~vw~lVKpFLs~kTr~KI~ilg~~~~~e~L~k~  407 (433)
                      |+||+|++..++.++...++.++.++|+|||+||+++||||+|++|.++|++|||||+++|++||+|+++ ++.+.|.+|
T Consensus       188 IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~  266 (320)
T 3q8g_A          188 VLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGS-SYKKELLKQ  266 (320)
T ss_dssp             EEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCT-THHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCC-CcHHHHHhh
Confidence            9999976422222224678999999999999999999999999999999999999999999999999986 467899999


Q ss_pred             CCCCCCCcccCCCCcCCC
Q 013964          408 VNIILSLPILYVVALLFG  425 (433)
Q Consensus       408 Id~~e~LP~eyGGt~~~~  425 (433)
                      |++ ++||.+|||+++|.
T Consensus       267 i~~-~~LP~~yGG~~~~~  283 (320)
T 3q8g_A          267 IPI-ENLPVKYGGTSVLH  283 (320)
T ss_dssp             SCG-GGSBGGGTSCBCCS
T ss_pred             CCh-hhCChhhCCCCCCC
Confidence            999 99999999999984
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 433
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 5e-28
d1auaa2203 c.13.1.1 (A:97-299) C-terminal domain of phosphati 1e-27
d1r5la2185 c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot 6e-16
d1olma175 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), 3e-13
d1auaa193 a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl 2e-11
d1r5la166 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei 1e-10
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 5e-28
 Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 11/152 (7%)

Query: 263 MHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFR---- 318
           M G+D DG PV Y++ G    K L       +      LR +++  E  +++   +    
Sbjct: 13  MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQD-----LLRTKMRECELLLQECAHQTTKL 67

Query: 319 PGGVSTIFQVNDLKN-SPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFH 377
              V TI  + D +        +    A  + L + ++NYPE + +   +  P  +   +
Sbjct: 68  GRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAY 127

Query: 378 TMISPFMTQRTKSKFVFAGPSKSTETLFKLVN 409
            +I PF+++ T+ K +  G +   E L K ++
Sbjct: 128 NLIKPFLSEDTRKKIMVLG-ANWKEVLLKHIS 158
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185 Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93 Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
d1olma3199 Supernatant protein factor (SPF), middle domain {H 100.0
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 100.0
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 99.95
d1olma175 Supernatant protein factor (SPF), N-terminal domai 99.72
d1auaa193 N-terminal domain of phosphatidylinositol transfer 99.66
d1r5la166 Alpha-tocopherol transfer protein {Human (Homo sap 99.31
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-34  Score=267.33  Aligned_cols=159  Identities=23%  Similarity=0.328  Sum_probs=139.9

Q ss_pred             eeccCCCCCeEEEEEcCCcChhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHhccC----CCCeeEEEEEeeCCCCCCCC
Q 013964          263 MHGFDRDGHPVCYNVYGEFQNKQLYAKTFSDEEKRMKFLRWRIQFLERSIRKLNFR----PGGVSTIFQVNDLKNSPGPG  338 (433)
Q Consensus       263 ~~G~Dk~GrPV~~~r~g~~d~k~l~~~t~~d~e~~~d~lr~~i~l~E~~ir~l~~~----~~~i~~itvIiDlkg~sgls  338 (433)
                      +||+|++||||+|+++|++|++++++..     +.++++|+.++.+|.+++.+..+    ..+++++++|+||+|++..+
T Consensus        13 ~~G~Dk~Grpv~~~r~g~~d~~~l~~~~-----~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~v~~~~~I~Dl~g~s~~~   87 (199)
T d1olma3          13 MCGYDLDGCPVWYDIIGPLDAKGLLFSA-----SKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKH   87 (199)
T ss_dssp             EEEECTTSCEEEEEECTTCCHHHHHTTS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGG
T ss_pred             cccCCCCCCEEEEEecccCChHHhhccC-----CHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceEEEEEECCCCchhh
Confidence            8999999999999999999999987654     36789999999999999876543    35688999999999875333


Q ss_pred             chh-HHHHHHHHHHHHhhhcccccceEEEEeCCHHHHHHHHHHhhcCCHhhhcceEEeCCCCChhHHhhhCCCCCCCccc
Q 013964          339 KRE-LRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKLVNIILSLPIL  417 (433)
Q Consensus       339 ~~~-L~~~~k~il~llq~nYPErL~rI~IINaP~~f~~vw~lVKpFLs~kTr~KI~ilg~~~~~e~L~k~Id~~e~LP~e  417 (433)
                      +.. ..++++.++.++|+|||++++++||||+|++|+++|+++|+||+++|++||+|+++ ++.+.|.+||++ ++||++
T Consensus        88 ~~~~~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~~-~~~~~L~~~i~~-~~lP~~  165 (199)
T d1olma3          88 LWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISP-DQVPVE  165 (199)
T ss_dssp             GCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCG-GGSBGG
T ss_pred             hccccHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeCC-CCHHHHHHhCCH-hhCCHH
Confidence            332 26779999999999999999999999999999999999999999999999999985 567899999999 999999


Q ss_pred             CCCCcCCCCcc
Q 013964          418 YVVALLFGWLS  428 (433)
Q Consensus       418 yGGt~~~~~~~  428 (433)
                      |||+|+|....
T Consensus       166 yGGt~~~~~~~  176 (199)
T d1olma3         166 YGGTMTDPDGN  176 (199)
T ss_dssp             GTSSBCCTTCC
T ss_pred             hCCCCCCCCCC
Confidence            99999886654
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure