Citrus Sinensis ID: 013968

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
MKDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVSANGTFASNGVKSHENGKEAYKGVKGTVPLKAVATKPSAEQSSRKTPSTISKVEKVPSNPRLKFSISGSSGCKGVPPTSNGKVNVHKSQSVKMNGVVKDSVPKEKSGKDPFINTNGSYKSKRVDLVGRGNDLASVSTSENGDTQSVGLNPVKPDPHEGNCTSSRTTAGRVPDPAKLLNGSVKFDTDISGSKRKSQESCILLAQDSESLAKLQELEEVLKKEASSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLKKLLIRDAKSTFLSQIPNSLKDDLVKHLRSFSDGKRGFPVT
ccccccccccccccEEEEEEEEccccEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccEEEEEEcccccEEEEcccccEEcccHHccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccc
ccccccHHHHccccccEEEEEEccccEEEEEEEHHHHcccccccccccccccccccHHcccccccccEEEEEEEEEEEccccccccEEEEEEEcccccEEEEccccEccccHHHHHccEEEEEEEEcccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcHHHcHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccc
MKDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFegifggkidKAIAFEEVLVLSSFMckasqdpqpeyklfgtivhsgfspdsghYYAYIKDAIGrwyccndsyvSVSTLQEVLSEKVYILFFIRanqrpvsangtfasngvkshengkeaykgvkgtvplkavatkpsaeqssrktpstiskvekvpsnprlkfsisgssgckgvpptsngkvnvhksqsvkmngvvkdsvpkeksgkdpfintngsykskrvdlvgrgndlasvstsengdtqsvglnpvkpdphegnctssrttagrvpdpakllngsvkfdtdisgskrksQESCILLAQDSESLAKLQELEEVLKKEASSVLQSCGWSEKVLSYMRSRKrqcahevgitpgdidlKKLLIRDAKSTFLSQIPNSLKDDLVKHLrsfsdgkrgfpvt
MKDLCLFSCKKLVSArkqmsilqspnILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVSANGTfasngvkshengkeaykgvkgtvplkavatkpsaeqssrktpstiskvekvpsnprlkfsisgssgckgvpptsngkvnvhksqsvkmngvvkdsvpkeksgkdpfintngsykskrvdLVGRGNDLAsvstsengdtqsvglnpvkpdpheGNCTssrttagrvpdpakllngsvkfdtdisgskrkSQESCILLAQDSESLAKLQELEEVLKKEassvlqscgwSEKVLSYMRSRKRQCAhevgitpgdidlkKLLIRDAKSTflsqipnslkddLVKHlrsfsdgkrgfpvt
MKDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVSANGTFASNGVKSHENGKEAYKGVKGTVPLKAVATKPSAEQSSRKTPSTISKVEKVPSNPRLKFSISGSSGCKGVPPTSNGKVNVHKSQSVKMNGVVKDSVPKEKSGKDPFINTNGSYKSKRVDLVGRGNDLASVSTSENGDTQSVGLNPVKPDPHEGNCTSSRTTAGRVPDPAKLLNGSVKFDTDISGSKRKSQESCILLAQDSESlaklqeleevlkkeASSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLKKLLIRDAKSTFLSQIPNSLKDDLVKHLRSFSDGKRGFPVT
***LCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQR*********************************************************************************************************************************************************************************************************************************SVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLKKLLIRDAKSTFLSQIP************************
MKDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKA**DPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFI*******************************************************************************************************************************************************************************************************************************************************************************RDA***********LKDDLVKHLRSFSDGKRGFP**
MKDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVSANGTFASNGVKSHENGKEAYKGVKGTVPLKA***********************VPSNPRLKFSISGSSGCKGVPPTSNGKVNVHKSQSVKMNGVVKDSVPKEKSGKDPFINTNGSYKSKRVDLVGRGNDLAS*********QSVGLNPVKPDPHEGNCTSSRTTAGRVPDPAKLLNGSVKFDT***********SCILLAQDSESLAKLQELEEVLKKEASSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLKKLLIRDAKSTFLSQIPNSLKDDLVKHLRSFSDGKRGFPVT
*KDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN********************************************************************************************************************************************************************************************************SCILLAQDSESLAKLQELEEVLKKEASSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLKKLLIRDAKSTFLSQIPNSLKDDLVKHLRSFSDGKRGF**T
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MKDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVSANGTFASNGVKSHENGKEAYKGVKGTVPLKAVATKPSAEQSSRKTPSTISKVEKVPSNPRLKFSISGSSGCKGVPPTSNGKVNVHKSQSVKMNGVVKDSVPKEKSGKDPFINTNGSYKSKRVDLVGRGNDLASVSTSENGDTQSVGLNPVKPDPHEGNCTSSRTTAGRVPDPAKLLNGSVKFDTDISGSKRKSQESCILxxxxxxxxxxxxxxxxxxxxxASSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLKKLLIRDAKSTFLSQIPNSLKDDLVKHLRSFSDGKRGFPVT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query433 2.2.26 [Sep-21-2011]
Q9FPS2661 Ubiquitin carboxyl-termin yes no 0.956 0.626 0.474 4e-91
Q9H9J4 1324 Ubiquitin carboxyl-termin yes no 0.277 0.090 0.429 6e-25
D3ZU96 1325 Ubiquitin carboxyl-termin no no 0.277 0.090 0.429 9e-25
E1B9W9 1333 Ubiquitin carboxyl-termin yes no 0.277 0.090 0.429 1e-24
B2RQC2 1324 Ubiquitin carboxyl-termin yes no 0.277 0.090 0.429 1e-24
B1AQJ2 1098 Ubiquitin carboxyl-termin no no 0.272 0.107 0.428 2e-24
Q9P275 1121 Ubiquitin carboxyl-termin no no 0.316 0.122 0.391 5e-24
Q9FPS9924 Ubiquitin carboxyl-termin no no 0.284 0.133 0.428 1e-21
Q9FKP5731 Ubiquitin carboxyl-termin no no 0.297 0.176 0.404 1e-19
C9J2P7530 Ubiquitin carboxyl-termin no no 0.279 0.228 0.344 5e-19
>sp|Q9FPS2|UBP25_ARATH Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana GN=UBP25 PE=2 SV=1 Back     alignment and function desciption
 Score =  335 bits (859), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 214/451 (47%), Positives = 264/451 (58%), Gaps = 37/451 (8%)

Query: 8   SCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQ 67
           SC+KLV+ARKQMSILQ+PNILVIQLKRF GIFGGKIDKAI+F E+LVLS+FM KAS+DPQ
Sbjct: 215 SCEKLVTARKQMSILQAPNILVIQLKRFGGIFGGKIDKAISFGEILVLSNFMSKASKDPQ 274

Query: 68  PEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIR 127
           PEYKLFG IVHSGFSP+SGHYYAY+KD++GRWYCCNDS+VS+STLQEVLSEK YILFF R
Sbjct: 275 PEYKLFGIIVHSGFSPESGHYYAYVKDSLGRWYCCNDSFVSLSTLQEVLSEKAYILFFSR 334

Query: 128 ANQRPVSANGTFASNGVKSHE-NGKEAYKGVKGTVPLKAVATKPSAEQSSRK------TP 180
           +NQRP SA     SNG  SHE NG E     K   PL     KP AEQS +K       P
Sbjct: 335 SNQRPASAKTLVTSNGTTSHEVNGCETSNPQKFIGPLNGFNMKPQAEQSFQKGNLASSKP 394

Query: 181 STI------------------SKVEKVPSNPRLKFSISGSSGCKGVPPTSNGKVNVHKSQ 222
                                SKVEK P  P  K SIS + G K V P  NG+++ H+ +
Sbjct: 395 HKFIRPKPRAEQAPLEDNLLSSKVEKAPLRPHAKVSISVNLGAKRVSPV-NGRLSFHQDE 453

Query: 223 SVKMNGVVKDSV----PKEKSGKD-PFINTNGSYKSKRVDLV-GRGNDLASVSTSENGDT 276
           ++      ++SV     K  SG +  F   NG    K      G  N   ++   E  + 
Sbjct: 454 NIAPKANKENSVSVLPTKVNSGTERKFGTENGGNGVKENGSAPGSSNHKVALHPHERSNG 513

Query: 277 QSVGLNPVKPDPHEGNCTSSRTTAGRVPDPAKLLNGSVKFDTDISGSKRKSQESCILLAQ 336
            S G +  K + H   C S+ +  G    P    NG     +    S  K ++ CILL +
Sbjct: 514 SSNGGDHHKDNLHP--CGSNGSQNG-TAHPETERNGVSTTQSKGLCSSTK-EDPCILLRK 569

Query: 337 DSESLAKLQELEEVLKKEASSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLKKLL 396
           D  S  +L+ ++E LKK+A S L+SCGW +KVL  M ++KR    + G   G  DLK+ L
Sbjct: 570 DESSRNELEAIKESLKKDALSHLRSCGWYDKVLISMHAKKRLRTEQSGGEDGS-DLKRRL 628

Query: 397 IRDAKSTFLSQIPNSLKDDLVKHLRSFSDGK 427
           I D KS+  SQIP  LK DLV  +   S  K
Sbjct: 629 IEDVKSSLKSQIPEELKADLVNRIWEISKKK 659
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q9H9J4|UBP42_HUMAN Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=3 Back     alignment and function description
>sp|D3ZU96|UBP42_RAT Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus GN=Usp42 PE=3 SV=1 Back     alignment and function description
>sp|E1B9W9|UBP42_BOVIN Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos taurus GN=USP42 PE=3 SV=1 Back     alignment and function description
>sp|B2RQC2|UBP42_MOUSE Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus GN=Usp42 PE=2 SV=1 Back     alignment and function description
>sp|B1AQJ2|UBP36_MOUSE Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus musculus GN=Usp36 PE=2 SV=1 Back     alignment and function description
>sp|Q9P275|UBP36_HUMAN Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36 PE=1 SV=3 Back     alignment and function description
>sp|Q9FPS9|UBP15_ARATH Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKP5|UBP17_ARATH Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana GN=UBP17 PE=2 SV=1 Back     alignment and function description
>sp|C9J2P7|U17LF_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 15 OS=Homo sapiens GN=USP17L15 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
224114846 657 predicted protein [Populus trichocarpa] 0.969 0.639 0.625 1e-137
224121556 621 predicted protein [Populus trichocarpa] 0.946 0.660 0.601 1e-128
255577279 644 cysteine-type endopeptidase, putative [R 0.953 0.641 0.613 1e-128
356556930 652 PREDICTED: ubiquitin carboxyl-terminal h 0.956 0.634 0.578 1e-121
356525831 641 PREDICTED: ubiquitin carboxyl-terminal h 0.969 0.655 0.556 1e-119
296086774 635 unnamed protein product [Vitis vinifera] 0.960 0.655 0.551 1e-116
225462100 631 PREDICTED: ubiquitin carboxyl-terminal h 0.960 0.659 0.551 1e-116
449460062 646 PREDICTED: ubiquitin carboxyl-terminal h 0.960 0.643 0.538 1e-109
297834320 662 ubiquitin-specific protease 25 [Arabidop 0.958 0.626 0.467 5e-91
18400378 661 ubiquitin carboxyl-terminal hydrolase 25 0.956 0.626 0.474 3e-89
>gi|224114846|ref|XP_002316872.1| predicted protein [Populus trichocarpa] gi|222859937|gb|EEE97484.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 265/424 (62%), Positives = 320/424 (75%), Gaps = 4/424 (0%)

Query: 9   CKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQP 68
           C+KLV+ARKQMSILQ+PN+LVIQLKRFEGIFG KIDKAIAFEEVLVLSSFM K SQDPQP
Sbjct: 222 CQKLVAARKQMSILQAPNVLVIQLKRFEGIFGAKIDKAIAFEEVLVLSSFMSKTSQDPQP 281

Query: 69  EYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRA 128
           EY LFGTIVHSG+SP+SGHYYAYIKDA+GRWYCCNDSYV++STLQEVLSEKVY+LFF R 
Sbjct: 282 EYNLFGTIVHSGYSPESGHYYAYIKDAMGRWYCCNDSYVTLSTLQEVLSEKVYVLFFSRT 341

Query: 129 NQRPVSANGTFASNGVKSHE-NGKEAYKGVKGTVPLKAVATKPSAEQSSRKTPSTISKVE 187
           NQRP SA  +FAS GVKS E NG   +K  KG VPLKA+ TKP  EQSS+K  S +S+++
Sbjct: 342 NQRPASAASSFASYGVKSCESNGCVEFKSSKGAVPLKALPTKPQVEQSSKKDISAMSRID 401

Query: 188 KVPSNPRLKFSISGSSGCKGVPPTSNGKVNVHKSQSVKMNGVVKDSVPKEKSGKD--PFI 245
           +VPS+P +K SI G+SG K  P + NGKV+  K Q+  MNG VK++V  EK  KD     
Sbjct: 402 RVPSSPPVKSSICGNSGSKSTPLSVNGKVDHLKGQNKGMNGNVKETVHVEKHDKDVSTVT 461

Query: 246 NTNGSYKSKRVDLVGRGNDLASVSTSENGDTQSVGLNPVKPDPHEGNCTSSRTTAGRVPD 305
           ++NG  K K VD V   N  A  + SENG +Q+   N VKP   + N T+S+ T GRV D
Sbjct: 462 SSNGFEKHKNVDAVEGENCHAFAAASENGHSQNAAFNSVKPLVCDSNGTTSKVTTGRVHD 521

Query: 306 PAKLLNGSVKFDTDISGSKRKSQE-SCILLAQDSESLAKLQELEEVLKKEASSVLQSCGW 364
             +L NGS+K   DISG KRK +E + ILLAQD++SLAK++E +E LK++AS +L SCG+
Sbjct: 522 HLELQNGSMKCCADISGLKRKLKEDTSILLAQDAQSLAKIEEFKEALKQQASLILGSCGF 581

Query: 365 SEKVLSYMRSRKRQCAHEVGITPGDIDLKKLLIRDAKSTFLSQIPNSLKDDLVKHLRSFS 424
            +KV  +MR+RKR C HE G  P   +LKKLLI DAK TF+SQIP SLK+DLVK L+SFS
Sbjct: 582 FDKVYDFMRARKRLCVHEAGNKPSGTELKKLLIADAKRTFISQIPESLKEDLVKRLQSFS 641

Query: 425 DGKR 428
             KR
Sbjct: 642 QEKR 645

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224121556|ref|XP_002330730.1| predicted protein [Populus trichocarpa] gi|222872506|gb|EEF09637.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255577279|ref|XP_002529521.1| cysteine-type endopeptidase, putative [Ricinus communis] gi|223531005|gb|EEF32859.1| cysteine-type endopeptidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356556930|ref|XP_003546773.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like [Glycine max] Back     alignment and taxonomy information
>gi|356525831|ref|XP_003531525.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like [Glycine max] Back     alignment and taxonomy information
>gi|296086774|emb|CBI32923.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462100|ref|XP_002271760.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449460062|ref|XP_004147765.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like [Cucumis sativus] gi|449519156|ref|XP_004166601.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297834320|ref|XP_002885042.1| ubiquitin-specific protease 25 [Arabidopsis lyrata subsp. lyrata] gi|297330882|gb|EFH61301.1| ubiquitin-specific protease 25 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18400378|ref|NP_566486.1| ubiquitin carboxyl-terminal hydrolase 25 [Arabidopsis thaliana] gi|75262798|sp|Q9FPS2.1|UBP25_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 25; AltName: Full=Deubiquitinating enzyme 25; Short=AtUBP25; AltName: Full=Ubiquitin thioesterase 25; AltName: Full=Ubiquitin-specific-processing protease 25 gi|11993490|gb|AAG42763.1|AF302673_1 ubiquitin-specific protease 25 [Arabidopsis thaliana] gi|60543331|gb|AAX22263.1| At3g14400 [Arabidopsis thaliana] gi|332641992|gb|AEE75513.1| ubiquitin carboxyl-terminal hydrolase 25 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
TAIR|locus:2090985661 UBP25 "ubiquitin-specific prot 0.665 0.435 0.503 4.7e-64
UNIPROTKB|C9JPC9 1044 USP42 "Ubiquitin carboxyl-term 0.720 0.298 0.276 1.5e-26
ZFIN|ZDB-GENE-030131-5739 1047 usp42 "ubiquitin specific pept 0.339 0.140 0.416 1.6e-26
UNIPROTKB|Q9H9J4 1324 USP42 "Ubiquitin carboxyl-term 0.720 0.235 0.276 2.2e-26
ZFIN|ZDB-GENE-030131-5450 1104 usp36 "ubiquitin specific pept 0.602 0.236 0.294 9.6e-25
UNIPROTKB|K7EMM6259 USP36 "Ubiquitin carboxyl-term 0.325 0.544 0.384 1.7e-23
UNIPROTKB|E7EWZ4475 USP42 "Ubiquitin carboxyl-term 0.512 0.467 0.317 3.9e-23
UNIPROTKB|E9PEW0 728 USP36 "Ubiquitin carboxyl-term 0.542 0.322 0.299 2.1e-22
UNIPROTKB|E1B9W9 1333 USP42 "Ubiquitin carboxyl-term 0.501 0.162 0.331 2.3e-22
UNIPROTKB|E2RKV1 1117 USP36 "Ubiquitin carboxyl-term 0.459 0.178 0.344 2.7e-22
TAIR|locus:2090985 UBP25 "ubiquitin-specific protease 25" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 152/302 (50%), Positives = 189/302 (62%)

Query:     8 SCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQ 67
             SC+KLV+ARKQMSILQ+PNILVIQLKRF GIFGGKIDKAI+F E+LVLS+FM KAS+DPQ
Sbjct:   215 SCEKLVTARKQMSILQAPNILVIQLKRFGGIFGGKIDKAISFGEILVLSNFMSKASKDPQ 274

Query:    68 PEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIR 127
             PEYKLFG IVHSGFSP+SGHYYAY+KD++GRWYCCNDS+VS+STLQEVLSEK YILFF R
Sbjct:   275 PEYKLFGIIVHSGFSPESGHYYAYVKDSLGRWYCCNDSFVSLSTLQEVLSEKAYILFFSR 334

Query:   128 ANQRPVSANGTFASNGVKSHE-NGKEAYKGVKGTVPLKAVATKPSAEQSSRKTPSTISKV 186
             +NQRP SA     SNG  SHE NG E     K   PL     KP AEQS +K     SK 
Sbjct:   335 SNQRPASAKTLVTSNGTTSHEVNGCETSNPQKFIGPLNGFNMKPQAEQSFQKGNLASSKP 394

Query:   187 EK-VPSNPRLKFS-ISG---SSGCKGVPPTSNGKVNVHKSQSVK----MNGVV---KDSV 234
              K +   PR + + +     SS  +  P   + KV++  +   K    +NG +   +D  
Sbjct:   395 HKFIRPKPRAEQAPLEDNLLSSKVEKAPLRPHAKVSISVNLGAKRVSPVNGRLSFHQDEN 454

Query:   235 PKEKSGKDPFINTNGSYKSKRVDLVGRGNDLASVSTSENGDTQSVGLNPVKPDPHEGNCT 294
                K+ K+  ++   +  +   +    G +       ENG       + V   PHE +  
Sbjct:   455 IAPKANKENSVSVLPTKVNSGTERKF-GTENGGNGVKENGSAPGSSNHKVALHPHERSNG 513

Query:   295 SS 296
             SS
Sbjct:   514 SS 515
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0004843 "ubiquitin-specific protease activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
UNIPROTKB|C9JPC9 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5739 usp42 "ubiquitin specific peptidase 42" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9J4 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5450 usp36 "ubiquitin specific peptidase 36" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|K7EMM6 USP36 "Ubiquitin carboxyl-terminal hydrolase 36" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E7EWZ4 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PEW0 USP36 "Ubiquitin carboxyl-terminal hydrolase 36" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1B9W9 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RKV1 USP36 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.766
3rd Layer3.4.19.120.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00110848
hypothetical protein (657 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 3e-58
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 1e-33
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 3e-30
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 1e-27
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 5e-24
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 3e-23
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 7e-20
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 9e-16
cd02664327 cd02664, Peptidase_C19H, A subfamily of Peptidase 1e-14
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 1e-14
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 2e-13
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 4e-12
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 1e-11
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 2e-10
cd02671332 cd02671, Peptidase_C19O, A subfamily of Peptidase 2e-10
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 5e-09
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 2e-05
cd02673245 cd02673, Peptidase_C19Q, A subfamily of Peptidase 2e-05
cd02666343 cd02666, Peptidase_C19J, A subfamily of Peptidase 9e-05
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 0.002
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  192 bits (490), Expect = 3e-58
 Identities = 62/118 (52%), Positives = 83/118 (70%), Gaps = 1/118 (0%)

Query: 9   CKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQP 68
           CKK V A KQ++I ++PN+L I LKRF    GGKI+K I+F E L LS +M +   D   
Sbjct: 188 CKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMSQ-PNDGPL 246

Query: 69  EYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 126
           +YKL+  +VHSGFSP SGHYY Y+K + G+WY  +DS VS  +++ VLS+K YILF+I
Sbjct: 247 KYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFYI 304

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 433
KOG1865545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 99.97
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 99.96
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 99.96
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 99.96
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 99.96
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 99.96
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 99.95
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 99.95
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 99.95
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 99.94
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 99.94
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 99.94
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 99.93
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 99.92
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 99.92
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 99.92
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 99.91
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 99.91
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 99.91
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 99.91
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 99.91
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 99.9
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 99.9
KOG1870842 consensus Ubiquitin C-terminal hydrolase [Posttran 99.87
KOG1867492 consensus Ubiquitin-specific protease [Posttransla 99.86
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 99.84
KOG1868653 consensus Ubiquitin C-terminal hydrolase [Posttran 99.83
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 99.78
KOG1873877 consensus Ubiquitin-specific protease [Posttransla 99.74
KOG0944763 consensus Ubiquitin-specific protease UBP14 [Postt 99.72
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 99.63
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 99.6
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 99.58
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 99.52
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 99.43
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 99.26
KOG12751118 consensus PAB-dependent poly(A) ribonuclease, subu 98.8
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 98.5
PF1016386 EnY2: Transcription factor e(y)2; InterPro: IPR018 97.36
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 97.0
KOG447992 consensus Transcription factor e(y)2 [Transcriptio 94.83
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-34  Score=300.04  Aligned_cols=126  Identities=41%  Similarity=0.746  Sum_probs=120.6

Q ss_pred             CCcccCCCCCceeEEEEEEEcccCCeeEEEEeceecccCCccceeeeecceeecCcccccCCCCCCCceEEEEEEEEeeC
Q 013968            2 KDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGF   81 (433)
Q Consensus         2 ddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~~~Ki~~~VeFP~~LDLs~f~~~~~~~~~~kYeL~gVIvHsG~   81 (433)
                      +.|+|++|++++.|.|+++|.++|+||+||||||++.+.+||+++|.||+.|||.+||..+. +....|.|||||||.|.
T Consensus       285 n~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~~~~gKI~K~I~fPE~LDl~PyMS~~~-e~s~~Y~LYavlVH~g~  363 (545)
T KOG1865|consen  285 NAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSNGTGGKISKPVSFPETLDLQPYMSQPN-EGSTVYKLYAVLVHLGT  363 (545)
T ss_pred             cccccchhhhhCcccceeeeecCCceEEEeeehhccCcccccccccCCcccccccccccCCC-CCCceEEEEEEEEeccc
Confidence            68999999999999999999999999999999999988999999999999999999999554 44579999999999999


Q ss_pred             CCCCCeEEEEEEcCCCCEEEEcCCcceeechhhhcCCCcEEEEEEEc
Q 013968           82 SPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRA  128 (433)
Q Consensus        82 s~~sGHYvayIR~~~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R~  128 (433)
                      +.++|||+||||...|.||.|||+.|+.++.+.|++..||||||.|.
T Consensus       364 ~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R~  410 (545)
T KOG1865|consen  364 SCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVLSQQAYILFYARK  410 (545)
T ss_pred             cccCCceEEEEEcCCCceEEccCceeeeccccceecccceEEEEEee
Confidence            99999999999999999999999999999999999999999999997

>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein [] Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>KOG4479 consensus Transcription factor e(y)2 [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 3e-15
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 3e-15
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 4e-15
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 9e-12
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 6e-07
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 6e-07
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 7e-07
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 6e-06
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 7e-06
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 7e-06
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 8e-06
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 8e-06
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 9e-06
1vjv_A415 Crystal Structure Of Ubiquitin Carboxyl-terminal Hy 2e-05
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure 
Iteration: 1

 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 70/128 (54%), Gaps = 12/128 (9%)
Query: 9   CKKLVSARKQMSILQSPNILVIQLKRFEGIFGG---KIDKAIAFEEVLVLSSFMCKASQD 65
           C     A KQ+ I + P++LV+QLKRFE +  G   K+D  I F   L + ++     +D
Sbjct: 344 CNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKD 403
Query: 66  PQPE--------YKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLS 117
              E        Y+L G + H G + + GHY A+ K + G+W+  NDS VS  + +EVL 
Sbjct: 404 KHSENGKVPDIIYELIGIVSHKG-TVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLK 462
Query: 118 EKVYILFF 125
           E+ Y+LF+
Sbjct: 463 EQAYLLFY 470
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase 6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A Resolution Length = 415 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 6e-44
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 1e-40
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 6e-36
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 2e-35
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 3e-34
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 3e-31
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 6e-30
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 2e-25
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 4e-15
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 5e-06
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 1e-10
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
 Score =  158 bits (402), Expect = 6e-44
 Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 12/130 (9%)

Query: 9   CKKLVSARKQMSILQSPNILVIQLKRFEGIFGG---KIDKAIAFEEVLVLSSFMCKASQD 65
           C     A KQ+ I + P++LV+QLKRFE +  G   K+D  I F   L + ++     +D
Sbjct: 344 CNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKD 403

Query: 66  PQPE--------YKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLS 117
              E        Y+L G + H G + + GHY A+ K + G+W+  NDS VS  + +EVL 
Sbjct: 404 KHSENGKVPDIIYELIGIVSHKG-TVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLK 462

Query: 118 EKVYILFFIR 127
           E+ Y+LF+  
Sbjct: 463 EQAYLLFYTI 472
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 99.97
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 99.97
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 99.97
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 99.97
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 99.97
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 99.96
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 99.96
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 99.96
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 99.96
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 99.93
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.12
3mhs_B96 Protein SUS1; multi-protein complex, hydrolase-tra 97.59
4dhx_B101 Enhancer of yellow 2 transcription factor homolog, 97.51
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=99.97  E-value=1.5e-31  Score=264.53  Aligned_cols=129  Identities=33%  Similarity=0.568  Sum_probs=116.1

Q ss_pred             CCcccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc--CCccceeeeecc-eeecCcccccCCCCCCCceEEEEEEEE
Q 013968            2 KDLCLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFEE-VLVLSSFMCKASQDPQPEYKLFGTIVH   78 (433)
Q Consensus         2 ddy~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~--~~Ki~~~VeFP~-~LDLs~f~~~~~~~~~~kYeL~gVIvH   78 (433)
                      ++|+|++|++++.|.|+..|.+||+||+|||+||.++.  ..|+++.|.||. .|||.+|+..... ....|+|+|||+|
T Consensus       230 ~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-~~~~Y~L~avv~H  308 (367)
T 2y6e_A          230 DPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSA-RPYVYDLIAVSNH  308 (367)
T ss_dssp             CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSS-CCCEEEEEEEEEE
T ss_pred             CCccCCCCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCC-CCceEEEEEEeec
Confidence            35899999999999999999999999999999999753  479999999996 7999999986542 3568999999999


Q ss_pred             eeCCCCCCeEEEEEEcC-CCCEEEEcCCcceeechhhhcCCCcEEEEEEEcCCCC
Q 013968           79 SGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRP  132 (433)
Q Consensus        79 sG~s~~sGHYvayIR~~-~~~Wy~FNDs~Vt~vs~eeVlse~AYmLFY~R~s~~~  132 (433)
                      .| +.++|||+||+|+. +++||+|||+.|+++++++|+...||||||+|.+..+
T Consensus       309 ~G-~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~  362 (367)
T 2y6e_A          309 YG-AMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEF  362 (367)
T ss_dssp             EC-SSSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC--
T ss_pred             CC-CCCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCC
Confidence            99 58999999999997 6899999999999999999999999999999987654
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B Back     alignment and structure
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 433
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 1e-25
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 1e-21
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 3e-19
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 5e-19
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 2e-16
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 1e-25
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 8   SCKKLVSARKQMSILQSPNILVIQLKRFE--GIFGGKIDKAIAFEEVLVLSSFMCKASQD 65
            C+    + K++ I + P +L++ LKRF   G +  K+  ++ F    +  S      ++
Sbjct: 226 HCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKN 285

Query: 66  PQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI-GRWYCCNDSYVSVSTLQEVLSEKVYILF 124
              +Y LF    H G   D GHY AY K+A   RW+  +D  VS  ++  V S   YILF
Sbjct: 286 NLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILF 344

Query: 125 FIR 127
           +  
Sbjct: 345 YTS 347
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 99.95
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 99.95
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 99.92
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 99.92
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 99.91
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.4e-29  Score=240.35  Aligned_cols=125  Identities=31%  Similarity=0.485  Sum_probs=110.2

Q ss_pred             ccCCCCCceeEEEEEEEcccCCeeEEEEeceeccc----CCccceeeeecceeecCcccccCCCCCCCceEEEEEEEEee
Q 013968            5 CLFSCKKLVSARKQMSILQSPNILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSG   80 (433)
Q Consensus         5 ~CekCkk~~~A~Kr~~I~kLP~VLiIhLkRF~~d~----~~Ki~~~VeFP~~LDLs~f~~~~~~~~~~kYeL~gVIvHsG   80 (433)
                      .|..|++...+.|+..|.++|+||+|||+||.++.    ..|++..|.||..|||.+|+..........|+|+|||+|.|
T Consensus       172 ~~~~~~~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G  251 (347)
T d1nbfa_         172 YDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSG  251 (347)
T ss_dssp             EECSTTCEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEEE
T ss_pred             cccccCcceeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeeeeeeccccccccccccCccceeeEEEEEecC
Confidence            35555567889999999999999999999998753    25999999999999999999887766678999999999999


Q ss_pred             CCCCCCeEEEEEEcC-CCCEEEEcCCcceeechhhhcC---------------CCcEEEEEEEcCC
Q 013968           81 FSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLS---------------EKVYILFFIRANQ  130 (433)
Q Consensus        81 ~s~~sGHYvayIR~~-~~~Wy~FNDs~Vt~vs~eeVls---------------e~AYmLFY~R~s~  130 (433)
                       +.++|||+||+|+. +++||+|||+.|+++++++|+.               .+||||||+|.+.
T Consensus       252 -~~~~GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~~~  316 (347)
T d1nbfa_         252 -DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK  316 (347)
T ss_dssp             -ETTEEEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEGGG
T ss_pred             -CCCCCEEEEeeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccccCCCCCEEEEEEEecCc
Confidence             47999999999976 5789999999999999999974               3699999999874
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure