Citrus Sinensis ID: 013969

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
Protein Sequence
MVTLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVRLVQSELGNELAHHLIIFQDS
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHcccccHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHccccccEEEEHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEccccccHHHHHHHHHHHHHHHccccccHcccHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHEEEEEEEEHHccccHHHHHHHHHHHHcccccccccEEEEHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHEEHHHHHcHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcc
Coil and Loop (DISEMBL)
mvtlkagsrppwvgLGAAVWVQIAAgnaynfplyshSLKSVLGFNQHQLTMLGVANdigenvgllpglasnkfppwLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNmrnfplsrgtVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYfvrpctpasgedsaapshfLFTQAASVVLGFFLLTTTIldhmiplsasISYASLFIMIILLMaplaipvkMTICrkrtsesgildqsvgssdsvvraggdadkseplldpsssttdlgsfrdnddVSEVALLLAEGegavrrkkrrpkrgedfkfTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFvgrlgggvvsEHFVRLVQSELGNELAHHLIIFQDS
Flexible Loop (DISEMBL)
mvtlkagsrppwvGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRKRTsesgildqsvgssdSVVRAGgdadkseplldpsssttdlgsfrdNDDVSEVALLlaegegavrrkkrrpkrgedfkfteaVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVRLVQSELGNELAHHLIIFQDS
Low Complexity Region (SEG)
MVTLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKlllvlavgvpavclvMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASlfimiillmaplaipVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVRLVQSELGNELAHHLIIFQDS
Disordered region (IsUnstruct)
**********PWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTPA******APSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRK****************************************************************************FKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVRLVQSELGNELAHHLIIF***
Disordered Region (DISOPRED)
************VGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKM****************************************************************************KRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVRLVQSELGNELAHHLIIFQDS
Disordered Region (DISEMBL)
********RPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGE************GEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVRLVQSELGNELAHHLIIFQDS
Disordered Region (DISPRO)
*V***AGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRKR***************************************************VALL***GEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVRLVQSELGNELAHHLIIFQDS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVRLVQSELGNELAHHLIIFQDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
255581273	570	conserved hypothetical protein [Ricinus	0.942	0.715	0.789	0.0
359484689	573	PREDICTED: uncharacterized protein LOC10	0.951	0.719	0.786	0.0
224120280	580	predicted protein [Populus trichocarpa]	0.949	0.708	0.767	0.0
449468956	565	PREDICTED: uncharacterized protein LOC10	0.942	0.722	0.669	1e-163
449516077	565	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.942	0.722	0.667	1e-162
356530583	569	PREDICTED: uncharacterized membrane prot	0.937	0.713	0.704	1e-160
225443039	564	PREDICTED: uncharacterized membrane prot	0.944	0.725	0.697	1e-159
356562916	571	PREDICTED: uncharacterized membrane prot	0.944	0.716	0.712	1e-159
356546146	571	PREDICTED: uncharacterized membrane prot	0.944	0.716	0.714	1e-158
356556543	570	PREDICTED: uncharacterized membrane prot	0.937	0.712	0.705	1e-158

>gi|255581273|ref|XP_002531448.1| conserved hypothetical protein [Ricinus communis] gi|223528941|gb|EEF30935.1| conserved hypothetical protein [Ricinus communis]

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/413 (78%), Positives = 369/413 (89%), Gaps = 5/413 (1%)

Query: 1   MVTLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE 60
           MV LKAGSRPPWVGLGAAVWVQIA+GNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE
Sbjct: 1   MVRLKAGSRPPWVGLGAAVWVQIASGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE 60

Query: 61  NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSS 120
           NVGL+PG+A NKFPPW++L IG LACFFGYGVLWLAVSRTV+SLP+WLL++ALCV TNSS
Sbjct: 61  NVGLIPGIACNKFPPWVILLIGCLACFFGYGVLWLAVSRTVQSLPHWLLFLALCVGTNSS 120

Query: 121 AWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGV 180
           AWL TAVLVTNMRNFPLSRGTVAGILKGYGG+SAAVFT IY+MLL NSSSKLL+ LA+G+
Sbjct: 121 AWLSTAVLVTNMRNFPLSRGTVAGILKGYGGISAAVFTAIYSMLLDNSSSKLLMFLAIGI 180

Query: 181 PAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISY 240
           P +C +MMYFV+ CTPASGEDS+  SHFLF QA  V+LGF++L TTILDHM+ LS+ ISY
Sbjct: 181 PVLCFMMMYFVKACTPASGEDSSEHSHFLFIQATLVILGFYVLITTILDHMLHLSSPISY 240

Query: 241 ASLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPS 300
           + L +MIIL+MAPLAIP+KMTICR R ++S +LDQSV SSD +V+A G+ +K+EPLL   
Sbjct: 241 SFLAMMIILVMAPLAIPIKMTICRTRATKSELLDQSVESSDCLVQAEGNGEKTEPLLKSQ 300

Query: 301 SSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVY 360
           +     GSFR+ND+ SEVA+LLAEGEGAV +K+RRP+RGEDFKFTEA+VKADFWLLF VY
Sbjct: 301 T----FGSFRENDETSEVAMLLAEGEGAV-KKRRRPRRGEDFKFTEALVKADFWLLFFVY 355

Query: 361 FAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVR 413
           F GVGSGVTVLNNLAQIGIA GVHDTT LLSLFSFCNFVGRLGGG VSEHFVR
Sbjct: 356 FVGVGSGVTVLNNLAQIGIALGVHDTTTLLSLFSFCNFVGRLGGGTVSEHFVR 408

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484689|ref|XP_002268798.2| PREDICTED: uncharacterized protein LOC100251745 [Vitis vinifera]

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/413 (78%), Positives = 364/413 (88%), Gaps = 1/413 (0%)

Query: 1   MVTLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE 60
           MVTLKAGSRPPWVGLGAAVWVQIA+GNAY FPLYSHSLKSVLGFNQHQLTMLGVANDIGE
Sbjct: 1   MVTLKAGSRPPWVGLGAAVWVQIASGNAYTFPLYSHSLKSVLGFNQHQLTMLGVANDIGE 60

Query: 61  NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSS 120
           NVGLLPG+  NKFPPW+VL IG+ ACF GYGVLWLA+SRT+ SLP+WLLW ALCVATNSS
Sbjct: 61  NVGLLPGVVCNKFPPWVVLSIGAFACFLGYGVLWLALSRTLLSLPFWLLWFALCVATNSS 120

Query: 121 AWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGV 180
           AWL T+VLVTNMRNFPLSRGTVAGILKGYGGLSAAV+TEIY   LH SSS+LL+ LA+GV
Sbjct: 121 AWLSTSVLVTNMRNFPLSRGTVAGILKGYGGLSAAVYTEIYTTTLHKSSSELLMFLALGV 180

Query: 181 PAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISY 240
           P +C  MMYF+RPCTPASGEDSA   HFLFTQAASVVLG +LLTTTIL+ +  LSA ISY
Sbjct: 181 PLICFTMMYFIRPCTPASGEDSAQHGHFLFTQAASVVLGSYLLTTTILNDIFSLSAPISY 240

Query: 241 ASLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPS 300
             L  M++LLMAPLAIP+KMT+     S+SG+L+Q VGSS+S+++   +ADK+EPLL PS
Sbjct: 241 TFLAAMVLLLMAPLAIPIKMTLNPTNRSKSGMLNQPVGSSESMLQGEENADKTEPLLTPS 300

Query: 301 SSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVY 360
           SST  LGSF  ND VSE+ +LLAEGEGAV +KKRRP+RGEDFKFTEA+VK DFWLLFLVY
Sbjct: 301 SSTASLGSFHKNDCVSEIDMLLAEGEGAV-KKKRRPRRGEDFKFTEALVKVDFWLLFLVY 359

Query: 361 FAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVR 413
           FAGVGSGVTVLNNLAQIGIAQGVH+TT+LL LFSFCNF+GRLGGG VSEHF+R
Sbjct: 360 FAGVGSGVTVLNNLAQIGIAQGVHNTTMLLCLFSFCNFLGRLGGGAVSEHFLR 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120280|ref|XP_002331009.1| predicted protein [Populus trichocarpa] gi|222872939|gb|EEF10070.1| predicted protein [Populus trichocarpa]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/413 (76%), Positives = 364/413 (88%), Gaps = 2/413 (0%)

Query: 1   MVTLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE 60
           MV LKAG+RPPWVGLGAAVWVQIA+GNAYNFPLYSHSLKSVLGFNQHQLTMLGVAND+GE
Sbjct: 1   MVNLKAGTRPPWVGLGAAVWVQIASGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDVGE 60

Query: 61  NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSS 120
           NVGL+PG+A NKFPPW++L IG+L+CFFGYGVLWLA+S  V+SLPYWLL +ALCVATNSS
Sbjct: 61  NVGLIPGIACNKFPPWVILLIGALSCFFGYGVLWLALSSKVQSLPYWLLCLALCVATNSS 120

Query: 121 AWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGV 180
           AWL TAVLVTNMRNFPLSRGTVAG+LKGYGG+SAAVFTEIY+ LL NSSSKLL+ LA+G+
Sbjct: 121 AWLSTAVLVTNMRNFPLSRGTVAGVLKGYGGISAAVFTEIYSTLLRNSSSKLLMFLALGI 180

Query: 181 PAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISY 240
           P +C ++MYFVR CTPASGEDS+  +HFLFTQ A +VLG ++LTTTIL+H+   SA +S 
Sbjct: 181 PVLCFIVMYFVRACTPASGEDSSEHAHFLFTQGALIVLGLYVLTTTILNHIFHFSAPVSN 240

Query: 241 ASLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPS 300
             L IM++LLMAP AIP+KMT  R R S+  +  Q V + DSV++   +ADK+EPLL  S
Sbjct: 241 TILVIMVVLLMAPFAIPIKMTFHRMRVSKPEMHHQPVETPDSVIQE-DNADKTEPLLKSS 299

Query: 301 SSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVY 360
           SSTT LGSFR+N + SEVA+LLAEGEGAV +KKRRPKRGEDF+FTEA++KADFWLLF VY
Sbjct: 300 SSTTALGSFRENVEASEVAMLLAEGEGAV-KKKRRPKRGEDFRFTEALIKADFWLLFFVY 358

Query: 361 FAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVR 413
           F GVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGG+VSEHFVR
Sbjct: 359 FVGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGIVSEHFVR 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468956|ref|XP_004152187.1| PREDICTED: uncharacterized protein LOC101211550 [Cucumis sativus]

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 276/412 (66%), Positives = 333/412 (80%), Gaps = 4/412 (0%)

Query: 2   VTLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN 61
           + LK G+RPPWVGL AAVWVQIA G++YNF LYSH LKSVLG NQ QLT+LGVANDIGE+
Sbjct: 4   LVLKGGTRPPWVGLAAAVWVQIAGGSSYNFSLYSHLLKSVLGLNQQQLTVLGVANDIGES 63

Query: 62  VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSA 121
           +GL+PGLA NKFPPW++L  G+  CF GYG +WLAVSRTV +LPYWLLW+  CVATNS+A
Sbjct: 64  MGLIPGLACNKFPPWVILLFGAFCCFIGYGAIWLAVSRTVPNLPYWLLWLTHCVATNSNA 123

Query: 122 WLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVP 181
           W GTAVLVTNMRNFPLSRGTVAGILKGY GLSAAV+T IY+++L  S+  LLL LA+G+P
Sbjct: 124 WFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTVIYSLVLRKSALNLLLFLAIGIP 183

Query: 182 AVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYA 241
            +CL MMYFVRPCTPAS ED +  +HFLFTQAA V+LG FL++TTILD     S ++ Y 
Sbjct: 184 ILCLAMMYFVRPCTPASSEDPSERAHFLFTQAACVLLGLFLVSTTILDATTTPSDAVGYT 243

Query: 242 SLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSS 301
            + IM+ILLM+PLA+P+KMTIC +  +    L   V SS+ +     D+ + EPLL PSS
Sbjct: 244 LVAIMVILLMSPLAVPIKMTICARTKT----LGPRVDSSEPLASGESDSSQIEPLLTPSS 299

Query: 302 STTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYF 361
           S T+LGSF +NDD S+V  LLA GEGA+ +KKRRPKRGEDFK  EAV+KADFWLL+ +YF
Sbjct: 300 SATNLGSFYENDDASDVETLLAVGEGAIHKKKRRPKRGEDFKLREAVIKADFWLLWFLYF 359

Query: 362 AGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVR 413
            GVG G+TVLNNL+QIGI+ G++D T+LL+LFSFCNFVGRLG GV+SEHFVR
Sbjct: 360 LGVGPGITVLNNLSQIGISLGINDATLLLALFSFCNFVGRLGSGVISEHFVR 411

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516077|ref|XP_004165074.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101223430 [Cucumis sativus]

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 275/412 (66%), Positives = 332/412 (80%), Gaps = 4/412 (0%)

Query: 2   VTLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN 61
           + LK G+RPPWVGL AAVWVQIA G++YNF LYSH LKSVLG NQ QLT+LGVANDIGE+
Sbjct: 4   LVLKGGTRPPWVGLAAAVWVQIAGGSSYNFSLYSHLLKSVLGLNQQQLTVLGVANDIGES 63

Query: 62  VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSA 121
           +GL+PGLA NKFPPW++L  G+  CF GYG +WLAVSRTV +LPYWLLW+  CVATNS+A
Sbjct: 64  MGLIPGLACNKFPPWVILLFGAFCCFIGYGAIWLAVSRTVPNLPYWLLWLTHCVATNSNA 123

Query: 122 WLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVP 181
           W GTAVLVTNMRNFPLSRGTVAGILKGY GLSAAV+T IY+++L  S+  LLL LA+G+P
Sbjct: 124 WFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTVIYSLVLRKSALNLLLFLAIGIP 183

Query: 182 AVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYA 241
            +CL MMYFVRPCTPAS ED +  +HFLFTQAA V+L  FL++TTILD     S ++ Y 
Sbjct: 184 ILCLAMMYFVRPCTPASSEDPSERAHFLFTQAACVLLXSFLVSTTILDATTTPSDAVGYT 243

Query: 242 SLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSS 301
            + IM+ILLM+PLA+P+KMTIC +  +    L   V SS+ +     D+ + EPLL PSS
Sbjct: 244 LVAIMVILLMSPLAVPIKMTICARTKT----LGPRVDSSEPLASGESDSSQIEPLLTPSS 299

Query: 302 STTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYF 361
           S T+LGSF +NDD S+V  LLA GEGA+ +KKRRPKRGEDFK  EAV+KADFWLL+ +YF
Sbjct: 300 SATNLGSFYENDDASDVETLLAVGEGAIHKKKRRPKRGEDFKLREAVIKADFWLLWFLYF 359

Query: 362 AGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVR 413
            GVG G+TVLNNL+QIGI+ G++D T+LL+LFSFCNFVGRLG GV+SEHFVR
Sbjct: 360 LGVGPGITVLNNLSQIGISLGINDATLLLALFSFCNFVGRLGSGVISEHFVR 411

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530583|ref|XP_003533860.1| PREDICTED: uncharacterized membrane protein YMR155W-like [Glycine max]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 291/413 (70%), Positives = 342/413 (82%), Gaps = 7/413 (1%)

Query: 1   MVTLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE 60
           M+ +K GSRPPWVGLGAAVWVQIA+GN + FPLYSHSLKSVLGF+Q  +T+LGVA DIGE
Sbjct: 1   MLRVKGGSRPPWVGLGAAVWVQIASGNTFTFPLYSHSLKSVLGFDQRHVTLLGVAVDIGE 60

Query: 61  NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSS 120
           N+GLLPGLA NKFPPWL+L +GSLA F GYG+L+LA+S T+ SLPY  LW AL VA NSS
Sbjct: 61  NLGLLPGLACNKFPPWLLLAVGSLAAFLGYGLLFLAISETLHSLPYITLWFALVVAANSS 120

Query: 121 AWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGV 180
           AWL TAVLVTNMRNFP SRG+VAGILKGYGGLSAAVFTEIY+++LHNSSSK LL +AVG+
Sbjct: 121 AWLTTAVLVTNMRNFPASRGSVAGILKGYGGLSAAVFTEIYSIVLHNSSSKFLLFIAVGI 180

Query: 181 PAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISY 240
           P VC  MM+ VRPCTPA+G+D   P HFLF Q +SVVLG +LL TT++ ++IP S ++SY
Sbjct: 181 PVVCFSMMFLVRPCTPATGDDPVEPYHFLFVQGSSVVLGVYLLATTVVGNIIPFSGAVSY 240

Query: 241 ASLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPS 300
             + +MI+LL+APLA+P+KMT+  +  S+S   +Q VGSS+      G  + +EPLL  S
Sbjct: 241 VLVAVMILLLIAPLAVPLKMTLFPRNGSKSDSPEQQVGSSE------GKDENAEPLLA-S 293

Query: 301 SSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVY 360
           SS   LGSF D DD+SEVA LLA GEGAV++KKRRPKRGEDFKFTEA+VKADFWLLF V+
Sbjct: 294 SSAGALGSFDDQDDLSEVAELLALGEGAVKQKKRRPKRGEDFKFTEAIVKADFWLLFFVF 353

Query: 361 FAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVR 413
           F GVG+GVTVLNNLAQIGIAQG  DTT LLS+FSFCNFVGRLGGGVVSEHFVR
Sbjct: 354 FVGVGTGVTVLNNLAQIGIAQGEEDTTTLLSIFSFCNFVGRLGGGVVSEHFVR 406

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443039|ref|XP_002270754.1| PREDICTED: uncharacterized membrane protein YMR155W [Vitis vinifera] gi|297743570|emb|CBI36437.3| unnamed protein product [Vitis vinifera]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 288/413 (69%), Positives = 343/413 (83%), Gaps = 4/413 (0%)

Query: 1   MVTLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE 60
           M  LKAGSRPPWVGLGAAVWV+IAAGN YNFPLYS SLKSV+G+NQ QLTMLGVANDIGE
Sbjct: 1   MPPLKAGSRPPWVGLGAAVWVEIAAGNGYNFPLYSPSLKSVMGYNQQQLTMLGVANDIGE 60

Query: 61  NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSS 120
           NVG+LPG+ASNK PPW VL IG+ ACF GYGVLWLAVS+TV++LPY +LW+AL +AT+S 
Sbjct: 61  NVGILPGIASNKLPPWAVLAIGACACFLGYGVLWLAVSQTVQNLPYIVLWLALVIATHSC 120

Query: 121 AWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGV 180
           AWLGTAVLVTNMRNFPLSRGTVAGILKGY GLSAAV+TEIYN +L  S+SKLLL L +G+
Sbjct: 121 AWLGTAVLVTNMRNFPLSRGTVAGILKGYIGLSAAVYTEIYNSVLQESASKLLLFLTLGL 180

Query: 181 PAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISY 240
           P +C  +MYF+R CTPASGEDS+   HFLFTQAASV LG +LL TT++D +   S ++S 
Sbjct: 181 PVLCFALMYFIRACTPASGEDSSEHGHFLFTQAASVCLGIYLLATTVVDDLFNPSDALSN 240

Query: 241 ASLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPS 300
               IM+I L+ PLAIP+KMT+    + ++      VGSSDS+V+  G+++++EPLL PS
Sbjct: 241 TFTGIMVIFLLCPLAIPLKMTLFPSNSKKN---LPPVGSSDSLVQGEGNSNQTEPLLTPS 297

Query: 301 SSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVY 360
           SS T LGSF + +  S++ +LLA GEGA+ +KKR+PKRGEDFKF EA +KADFWLL+LVY
Sbjct: 298 SSATCLGSFHEGEYASDIDMLLAVGEGAI-KKKRKPKRGEDFKFREAFIKADFWLLWLVY 356

Query: 361 FAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVR 413
           F GVGSGVTVLNNLAQIG+A GV DTTILLSLFSFCNF+GRL GGVVSE+FVR
Sbjct: 357 FLGVGSGVTVLNNLAQIGVAFGVTDTTILLSLFSFCNFLGRLFGGVVSEYFVR 409

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562916|ref|XP_003549714.1| PREDICTED: uncharacterized membrane protein YMR155W-like [Glycine max]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 295/414 (71%), Positives = 349/414 (84%), Gaps = 5/414 (1%)

Query: 1   MVTLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE 60
           M+ +K G RPPWVGLGAAVWVQIA+GN Y FPLYSHSLKSVLGFNQ Q+T+LGVANDIGE
Sbjct: 1   MLRVKGGKRPPWVGLGAAVWVQIASGNGYCFPLYSHSLKSVLGFNQSQITLLGVANDIGE 60

Query: 61  NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSS 120
           NVG+LPGLA NKFPPWL+LFIG+L  F G+GVLWLA+++T++SLP+ LLW AL VATNS 
Sbjct: 61  NVGILPGLACNKFPPWLILFIGALFSFLGFGVLWLAITKTLDSLPFILLWFALAVATNSC 120

Query: 121 AWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGV 180
           AWL TA+LVTNMRNFP+SRGTVAGILKGY GLSAAVFT+IY+++ HNSSSK LL LA+G+
Sbjct: 121 AWLSTAILVTNMRNFPVSRGTVAGILKGYSGLSAAVFTQIYSVVFHNSSSKFLLFLAIGI 180

Query: 181 PAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISY 240
           PA+C   M+ VRPCTPASG+DSA   HFLF Q ASV +G ++L TT+LD+ I +  S+SY
Sbjct: 181 PALCFSTMFLVRPCTPASGDDSAEKGHFLFIQGASVAMGLYILATTLLDNFIHIRDSVSY 240

Query: 241 ASLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPS 300
           A L +MI+LL+APL IP+KMT+C ++ S + I ++ VGS+D +V+ G   D  EPLL  S
Sbjct: 241 ALLAVMILLLLAPLVIPIKMTLCPRKASSTEIPEEHVGSTDYLVQDG--KDNVEPLLS-S 297

Query: 301 SSTTDLGSFRD-NDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLV 359
           SS + LGSF D  D  +EVA+LLAEGEGAV RKKRRPKRGEDFKFTEA+VKAD+WLLF V
Sbjct: 298 SSASGLGSFNDVVDGSAEVAMLLAEGEGAV-RKKRRPKRGEDFKFTEALVKADYWLLFFV 356

Query: 360 YFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVR 413
           YF GVG+GVTVLNNLAQIGIAQG+ DTTILLSLFSF NFVGRLGGGVVSE+FVR
Sbjct: 357 YFVGVGTGVTVLNNLAQIGIAQGMEDTTILLSLFSFFNFVGRLGGGVVSEYFVR 410

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546146|ref|XP_003541492.1| PREDICTED: uncharacterized membrane protein YMR155W-like [Glycine max]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 296/414 (71%), Positives = 346/414 (83%), Gaps = 5/414 (1%)

Query: 1   MVTLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE 60
           M+ +K G RPPWVGLGAAVWVQIA+GN Y FPLYSHSLKSVLGFNQ Q+T+LGVANDIGE
Sbjct: 1   MLRVKGGKRPPWVGLGAAVWVQIASGNGYCFPLYSHSLKSVLGFNQSQITLLGVANDIGE 60

Query: 61  NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSS 120
           NVG+LPGLA NKFPPWL+LFIG+L  F G+GVLWLA+++T++SLP+ LLW AL V TNS 
Sbjct: 61  NVGILPGLACNKFPPWLILFIGALFSFLGFGVLWLAITKTLDSLPFILLWFALAVGTNSC 120

Query: 121 AWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGV 180
           AWL TA+LVTNMRNFP+SRGTVAGILKGY GLSAAVFT+IY+++ HNSSSK LL LA+G+
Sbjct: 121 AWLSTAILVTNMRNFPVSRGTVAGILKGYSGLSAAVFTQIYSVVFHNSSSKFLLFLAIGI 180

Query: 181 PAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISY 240
           PA+C   M+ VRPCTPASGEDSA   HFLF Q ASV +G ++L TTILD+ I +S S+SY
Sbjct: 181 PALCFSTMFLVRPCTPASGEDSAEKGHFLFIQGASVAMGLYILATTILDNFIHISDSVSY 240

Query: 241 ASLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPS 300
           A L +MI+LL+APL IP KMT+C ++ S +   ++ VGSSD +V+ G   D  EPLL  S
Sbjct: 241 ALLAVMILLLLAPLVIPTKMTLCPRKASNTETPEEHVGSSDFLVQDG--KDNIEPLLS-S 297

Query: 301 SSTTDLGSFRD-NDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLV 359
           SS + LGSF D  D  +EVA+LLAEGEGAV RKKRRPKRGEDFKFTEA+VKAD+WLLF V
Sbjct: 298 SSASGLGSFNDVVDGSAEVAMLLAEGEGAV-RKKRRPKRGEDFKFTEALVKADYWLLFFV 356

Query: 360 YFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVR 413
           YF GVG+GVTVLNNLAQIGIAQG+ DTT LLSLFSF NFVGRLGGGVVSE+FVR
Sbjct: 357 YFVGVGTGVTVLNNLAQIGIAQGMEDTTNLLSLFSFFNFVGRLGGGVVSEYFVR 410

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556543|ref|XP_003546584.1| PREDICTED: uncharacterized membrane protein YMR155W-like [Glycine max]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/414 (70%), Positives = 341/414 (82%), Gaps = 8/414 (1%)

Query: 1   MVTLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE 60
           M+ +K GSRPPWVGLGAAVWVQIA+GN + FPLYSHSLKSVLGF+Q  +T+LGVA DIGE
Sbjct: 1   MLRVKGGSRPPWVGLGAAVWVQIASGNTFTFPLYSHSLKSVLGFDQRHVTLLGVAIDIGE 60

Query: 61  NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSS 120
           N+GLLPG+A NK PPWL+L +GSLA F GYG+L+LA+S+T+ SLPY LLW AL VA NSS
Sbjct: 61  NLGLLPGVACNKLPPWLLLVVGSLAAFLGYGLLFLAISKTLHSLPYLLLWFALVVAANSS 120

Query: 121 AWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGV 180
           AWL TAVLVTNMRNFP SRG+VAGILKGYGGLSAAVFTEIY+++LHNSSSK LL LAVG+
Sbjct: 121 AWLTTAVLVTNMRNFPASRGSVAGILKGYGGLSAAVFTEIYSIVLHNSSSKFLLFLAVGI 180

Query: 181 PAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISY 240
           P VC  MM+ VRPCTPA+G+D   P HFLF Q +SVVLG +LL TTI+ ++IP S  +SY
Sbjct: 181 PVVCFSMMFLVRPCTPATGDDPVEPYHFLFVQGSSVVLGVYLLATTIVGNIIPFSGELSY 240

Query: 241 ASLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPS 300
           A + +MI+LL+APLA+P+KMT+  +  S+S   +Q VGSS+      G  + +EPLL  S
Sbjct: 241 ALVAVMILLLIAPLAVPLKMTLFPRHGSKSDSPEQQVGSSE------GKDESAEPLL-AS 293

Query: 301 SSTTDLGSFRDNDDVSEVALLLAEGEGAV-RRKKRRPKRGEDFKFTEAVVKADFWLLFLV 359
           SS   LGSF D DD SEVA LLA GEGAV ++K+RRPKRGEDFKFTEA+VKADFWLLF V
Sbjct: 294 SSAGALGSFDDQDDSSEVAELLALGEGAVKQKKRRRPKRGEDFKFTEAIVKADFWLLFFV 353

Query: 360 YFAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVR 413
           YF GVG+GVTVLNNLAQIGIAQG  DTT LLS+FSFCNFVGRL GGVVSEHFVR
Sbjct: 354 YFVGVGTGVTVLNNLAQIGIAQGEEDTTTLLSIFSFCNFVGRLSGGVVSEHFVR 407

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
TAIR|locus:2198938	561	AT1G80530 "AT1G80530" [Arabido	0.926	0.714	0.537	1.2e-115
TAIR|locus:2059829	546	AT2G16660 [Arabidopsis thalian	0.551	0.437	0.388	2.9e-62
TAIR|locus:2116855	567	AT4G34950 [Arabidopsis thalian	0.896	0.684	0.342	8.1e-60
TAIR|locus:2078643	584	AT3G01930 [Arabidopsis thalian	0.928	0.688	0.336	4.6e-57
TAIR|locus:2159752	540	AT5G50520 [Arabidopsis thalian	0.524	0.420	0.353	7.8e-56
TAIR|locus:2832385	540	AT5G50630 [Arabidopsis thalian	0.524	0.420	0.353	7.8e-56
TAIR|locus:2174683	579	AT5G14120 [Arabidopsis thalian	0.919	0.687	0.320	2.6e-54
TAIR|locus:2046238	577	AT2G28120 [Arabidopsis thalian	0.524	0.393	0.331	1.3e-44
TAIR|locus:2056103	601	AT2G39210 "AT2G39210" [Arabido	0.346	0.249	0.42	3.9e-43
TAIR|locus:2040809	525	AT2G34350 [Arabidopsis thalian	0.526	0.434	0.312	2.9e-40

TAIR|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)]

 Score = 1140 (406.4 bits), Expect = 1.2e-115, P = 1.2e-115
 Identities = 220/409 (53%), Positives = 287/409 (70%)

Query:     5 KAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGL 64
             K+GSRPPWVGL AA WVQ++AG+   FPLYS +LKSVLGF+Q Q+T+LGVA D+GEN+GL
Sbjct:     7 KSGSRPPWVGLAAAAWVQVSAGSGSTFPLYSSALKSVLGFSQQQVTILGVACDLGENMGL 66

Query:    65 LPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLG 124
             LPG ASNK PPW +L IG+ +CF G+GVLWL+VS+ V  LP+WLL++AL +ATNS++W G
Sbjct:    67 LPGYASNKLPPWSMLLIGASSCFLGFGVLWLSVSQIVLGLPFWLLFVALALATNSNSWFG 126

Query:   125 TAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKXXXXXXXXXXXXX 184
             TA LVTNMRNFP+SRG VAG+LKGY G+S A FT +++M+LH+S+               
Sbjct:   127 TASLVTNMRNFPMSRGPVAGLLKGYIGISGAAFTVLFSMVLHHSAMDLLLFLTVGIPVIC 186

Query:   185 XXMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASXX 244
               +MYF+RPC PA+GED + P +F F    S++   +L+ TT+L  +  L + + Y    
Sbjct:   187 LTVMYFIRPCIPATGEDPSEPMYFAFLLVTSILFAAYLVVTTVLSEVFILPSILKYVLVA 246

Query:   245 XXXXXXXXXXXXXVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTT 304
                          +KMT+ R     S +     GSSD++ +  G  +  EPLL PS+S +
Sbjct:   247 IMVLLLLSPLAVPIKMTLFRSNAKSSPL-----GSSDNLAKEEGTHE--EPLLTPSTSAS 299

Query:   305 DLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGV 364
             +LG   + DD S++ +LLAE EGAV+ KKR+P+RGEDFKF +  VKADFWLL+ VYF G+
Sbjct:   300 NLGPIFEGDDESDMEILLAEAEGAVK-KKRKPRRGEDFKFGQVFVKADFWLLWFVYFLGM 358

Query:   365 GSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVR 413
             GSGVTV NNLAQIG A G+ DTTILL LFSF NF+GRL  G +SEHFVR
Sbjct:   359 GSGVTVSNNLAQIGFAFGIKDTTILLCLFSFFNFIGRLASGAISEHFVR 407

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
 Identities = 94/242 (38%), Positives = 139/242 (57%)

Query:     3 TLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENV 62
             ++ + S   W+G   AVWVQ  +GN Y F  YS +LKS++  NQ +L  L VA D+G+  
Sbjct:     6 SISSSSALKWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLNQLELNNLSVAKDVGKAF 65

Query:    63 GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAW 122
             G+L GLAS++ P  ++L IG      GYGV WL VSRT++ +PYW + I LC+  NS+ W
Sbjct:    66 GILAGLASDRLPTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPYWQMCIFLCMGGNSTTW 125

Query:   123 LGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKXXXXXXXXXXX 182
             + TAVLVT +RNF  +RG V+GILKGY GLS A+FT++   L  N  +            
Sbjct:   126 MNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFSNDPASFLVLLAVVPFA 185

Query:   183 XXXXMMYFVRPCTPASG--EDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISY 240
                  ++F+R   PAS   E++    +F      +VV+  +L +  I+     +  S+++
Sbjct:   186 VCLTAVFFLREIPPASSAAEENEETRYFTIFNIVAVVVAVYLQSYDIIGIKTGVF-SVAF 244

Query:   241 AS 242
             AS
Sbjct:   245 AS 246

GO:0009507 "chloroplast" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 140/409 (34%), Positives = 221/409 (54%)

Query:    12 WVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASN 71
             W+G   AVWVQ  +GN Y F  YS +LKS++   Q +L  L VA D+G+  G+L GLAS+
Sbjct:    17 WLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLTQLELNSLSVAKDVGKAFGILAGLASD 76

Query:    72 KFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTN 131
             +    ++L IGS     GYGV WL VSRT++ +PYW + + LC+  NS+ W+ TAVLVT 
Sbjct:    77 RLSTPVILLIGSFEGLLGYGVQWLVVSRTIQPIPYWQMCVFLCMGGNSTTWMNTAVLVTC 136

Query:   132 MRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKXXXXXXXXXXXXXXXMMYFV 191
             +RNF  +RG V+GILKGY GLS A+FT++ N L  +  +                 ++F+
Sbjct:   137 IRNFRRNRGPVSGILKGYVGLSTAIFTDLCNALFSSDPASFLVLLSVVPFAVCLTAVFFL 196

Query:   192 RPCTPAS--GEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSA-SISYASXXXXXX 248
             R   P++   ED+    +F      +VV+  +L +  I+   I   A SI++AS      
Sbjct:   197 REIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDIIG--IKTGAFSIAFASILLILL 254

Query:   249 XXXXXXXXXVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGS 308
                            R +  +   ++  +   + ++R+G + +  E ++  +++      
Sbjct:   255 ASPVAVPFHA---FIRSKVHDEQDVEGRI--DEPLLRSGSEIEVEETIVGAAAAA----- 304

Query:   309 FRDNDDVSEVALLLAEGE---GA-VRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGV 364
               DN+    +  L  E E   G  V  +K+RP  GE+    EA++  DFW+LF+ +  GV
Sbjct:   305 --DNELPPSLKPLSNEEEENHGTIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCGV 362

Query:   365 GSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVR 413
             G+G+ V+NN+ QIG+A G  D +I +S+ S   F GR+  G +SEHF++
Sbjct:   363 GTGLAVMNNMGQIGLALGYTDVSIFVSMTSIWGFFGRILSGTISEHFIK 411

GO:0009507 "chloroplast" evidence=ISM

GO:0007623 "circadian rhythm" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 139/413 (33%), Positives = 206/413 (49%)

Query:    12 WVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASN 71
             W+   AA+W+Q  AG  Y F   S  +KS L +NQ QL+ LGVA D+G++VG L G  S 
Sbjct:    17 WLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQLSRLGVAKDLGDSVGFLAGTLSE 76

Query:    72 KFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTN 131
               P W  L +GS+    GYG +WL V+     LP W + I + V  N   +  TA LV+ 
Sbjct:    77 ILPLWAALLVGSVQNLVGYGWVWLIVTGRAPILPLWAMCILIFVGNNGETYFNTAALVSG 136

Query:   132 MRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKXXXXXXXXXXXXXXXMMYFV 191
             ++NFP SRG V GILKG+ GL  A+ +++Y M+  +  +                +M+F+
Sbjct:   137 VQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSDRASLIFMVAVAPSVVVVPLMFFI 196

Query:   192 RPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASXXXXXXXXX 251
             RP        S+  + F    A  ++L  +L+   +++  I LS SI  A          
Sbjct:   197 RPVGGHRQIRSSDATSFTVIYAVCILLAAYLMAVMLVEDFIDLSHSIIIAFTVVLFAILL 256

Query:   252 XXXXXXVKMTICRKRTSESGILDQSVGSSDSVVRAGGDA--DKSEPLL-----DPSSSTT 304
                   +  +     T     L++ +         G     D    L+     D      
Sbjct:   257 VPIFIPIATSCFTASTDPCDTLEEPLLGDQQGQDPGQSTTPDHGPELIFSEVEDEKPKEV 316

Query:   305 DL-GSFRDNDDVSEVA--LLLAEGEGAVRRKKRR-PKRGEDFKFTEAVVKADFWLLFLVY 360
             DL  +   +  ++++   L+ A  EGAVR K+RR P RGEDF  T+A+VKADFWL+F   
Sbjct:   317 DLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGPHRGEDFTLTQALVKADFWLIFFSL 376

Query:   361 FAGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVR 413
               G GSG+TV++NL Q+  + G  +T + +S+ S  NF+GR+GGG  SE  VR
Sbjct:   377 LLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWNFLGRIGGGYFSELIVR 429

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
 Identities = 81/229 (35%), Positives = 125/229 (54%)

Query:    12 WVGLGAAVWVQIAAGNAYNFP-LYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLAS 70
             W+    A+WVQ  AG  Y F    S ++K+ LG+NQ Q+ +LGVA ++G+ +G + G  S
Sbjct:    17 WLVFVCAMWVQSVAGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDAIGFVSGALS 76

Query:    71 NKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVT 130
                P W+VL +G+    FGYGV+WL V+  + +LP W+L++A+ V TN   +  TA LV+
Sbjct:    77 EVSPSWVVLLVGATQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGETYYNTASLVS 136

Query:   131 NMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKXXXXXXXXXXXXXXXMMYF 190
              + NFP SRG V GILKG+ GLS A+ T++Y M   +  S                +++ 
Sbjct:   137 CIHNFPESRGPVVGILKGFSGLSGAILTQVYLMFNPSHDSSVILMVALGPPVVVLALLFI 196

Query:   191 VRPCTPASGEDSAAPS-HFLFTQAASVVLGFFLLTTTILDHMIPLSASI 238
             VRP   +   +  +    FL      VVL  +LL   +L  +  ++ +I
Sbjct:   197 VRPVERSCRTNLRSDDLRFLAIYGFCVVLAVYLLGLLVLQSVFDMTQTI 245

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
 Identities = 81/229 (35%), Positives = 125/229 (54%)

Query:    12 WVGLGAAVWVQIAAGNAYNFP-LYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLAS 70
             W+    A+WVQ  AG  Y F    S ++K+ LG+NQ Q+ +LGVA ++G+ +G + G  S
Sbjct:    17 WLVFVCAMWVQSVAGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDAIGFVSGALS 76

Query:    71 NKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVT 130
                P W+VL +G+    FGYGV+WL V+  + +LP W+L++A+ V TN   +  TA LV+
Sbjct:    77 EVSPSWVVLLVGATQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGETYYNTASLVS 136

Query:   131 NMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKXXXXXXXXXXXXXXXMMYF 190
              + NFP SRG V GILKG+ GLS A+ T++Y M   +  S                +++ 
Sbjct:   137 CIHNFPESRGPVVGILKGFSGLSGAILTQVYLMFNPSHDSSVILMVALGPPVVVLALLFI 196

Query:   191 VRPCTPASGEDSAAPS-HFLFTQAASVVLGFFLLTTTILDHMIPLSASI 238
             VRP   +   +  +    FL      VVL  +LL   +L  +  ++ +I
Sbjct:   197 VRPVERSCRTNLRSDDLRFLAIYGFCVVLAVYLLGLLVLQSVFDMTQTI 245

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 132/412 (32%), Positives = 204/412 (49%)

Query:    12 WVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASN 71
             W+   AA+W+Q  AG  Y F   S  +KS L +NQ +L+ LGVA D+G++VG + G  S 
Sbjct:    17 WLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKELSRLGVAKDLGDSVGFIAGTLSE 76

Query:    72 KFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTN 131
               P W  L +G++    GYG +WL V+     LP W + + + V  N   +  T  LV+ 
Sbjct:    77 ILPLWAALLVGAVQNLIGYGWVWLIVTGRAPILPLWAMCVLIFVGNNGETYFNTGALVSG 136

Query:   132 MRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKXXXXXXXXXXXXXXXMMYFV 191
             ++NFP SRG V GILKG+ GL  A+ ++IY M+  ++ +                +M+F+
Sbjct:   137 VQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSNPASLILMVAVTPAVVVVCLMFFI 196

Query:   192 RPCTPASGEDSAAPSH---FLFTQAASVVLGFFLLTTTILDHMIPLSASISYASXXXXXX 248
             RP     G     P+    F F     ++L  +L++  ++  ++ +S ++          
Sbjct:   197 RP---VGGHKQIRPTDGASFTFIYGVCLLLAAYLMSVMLIQDLVVVSHNVITVFTIVLFV 253

Query:   249 XXXXXXXXXVKMTICRKRTSESGILDQSVGSSDSVVRAG---GDADKSEPLLDPSSSTTD 305
                      +  +   +       +++ +         G    D   SE + D      D
Sbjct:   254 ILVVPILVPIMTSFFTETNEPDDTIEEPLVPKREDQEPGLQTPDLILSE-VEDEKPKDVD 312

Query:   306 L--GSFRDNDDVS-EVALLLAEGEGAVRRKKRR-PKRGEDFKFTEAVVKADFWLLFLVYF 361
             L   S R       +  L+ A  EGAVR  +RR P RGEDF  T+A+VKADFWL+F    
Sbjct:   313 LLPASERHKRIAHLQAQLMQAAAEGAVRVNRRRGPHRGEDFTLTQALVKADFWLIFFSLL 372

Query:   362 AGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGVVSEHFVR 413
              G GSG+TV++NL Q+  + G  +T +L+S+ S  NF+GR+GGG  SE  VR
Sbjct:   373 LGSGSGLTVIDNLGQMSQSLGYDNTHVLVSMISIWNFLGRIGGGYFSELVVR 424

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
 Identities = 77/232 (33%), Positives = 117/232 (50%)

Query:    12 WVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASN 71
             W  + A+  +   AG  Y F  YS  +KS LG++Q  L +LG   D+G NVG+L GL + 
Sbjct:    18 WFMVFASFLIMACAGATYLFGTYSKDIKSTLGYDQTTLNLLGFFKDLGANVGVLSGLIAE 77

Query:    72 KFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTN 131
               P W VL IGS   F GY ++WL V+  V     W + + +C+  NS  +  T  LVT 
Sbjct:    78 VTPTWFVLTIGSAMNFVGYFMIWLTVTGKVAKPKVWQMCLYICIGANSQNFANTGALVTC 137

Query:   132 MRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKXXXXXXXXXXXXXXXMMYFV 191
             ++NFP SRG + G+LKGY GLS A+FT++Y  +  + S                  +Y +
Sbjct:   138 VKNFPESRGVMLGLLKGYVGLSGAIFTQLYFAIYGHDSKSLILLIAWLPAAVSLVFVYLI 197

Query:   192 RPCTPASGEDSAAPSH-FLFTQAASVVLGFFLLTTTILDHMIPLSASISYAS 242
             R        +  +  + FL+    S+ L  FL+   I +  +  S + +YA+
Sbjct:   198 REKKVVRQRNELSVFYQFLYI---SIFLALFLMAMNIAEKQVHFSKA-AYAA 245

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 3.9e-43, Sum P(2) = 3.9e-43
 Identities = 63/150 (42%), Positives = 91/150 (60%)

Query:    12 WVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASN 71
             W     ++ +   AG  Y F +YS  +K  LG++Q  L +L    D+G NVG+L GL + 
Sbjct:    22 WFMFFGSLLIMSTAGATYMFGIYSGDIKETLGYDQTTLNLLSFFKDLGANVGVLAGLLNE 81

Query:    72 KFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTN 131
               PPW +L IG++  FFGY ++WLAV+  +     W + + +CV  NS ++  T  LVT 
Sbjct:    82 VTPPWFILLIGAILNFFGYFMIWLAVTERISKPQVWHMCLYICVGANSQSFANTGSLVTC 141

Query:   132 MRNFPLSRGTVAGILKGYGGLSAAVFTEIY 161
             ++NFP SRG V GILKGY GLS A+ T++Y
Sbjct:   142 VKNFPESRGVVLGILKGYVGLSGAIITQLY 171

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 2.9e-40, Sum P(2) = 2.9e-40
 Identities = 76/243 (31%), Positives = 119/243 (48%)

Query:    12 WVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGL--- 68
             WV   A++W+Q  +G +Y F +YS  LKS   ++Q  L  + V  DIG NVG+L GL   
Sbjct:     8 WVAAAASIWIQSFSGASYTFGIYSSVLKSSQSYDQSTLDTVSVYKDIGANVGILSGLFYT 67

Query:    69 --ASNK------FP-PWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNS 119
               AS K      F  PWLV+F+G L  F GYG +W+A S  +   P  ++ + +  A + 
Sbjct:    68 AVASRKSGNGGFFSGPWLVIFVGLLQWFVGYGFIWMATSGVIPRPPVAMMCLFMFFAGHC 127

Query:   120 SAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKXXXXXXXX 179
               +  TA++VT +RNF    GT  GI+KGY GLS A+  ++Y++                
Sbjct:   128 QPFFNTAIVVTAVRNFSDYGGTAVGIMKGYLGLSGAILVQMYHIFCGGDPRNYILLLAVV 187

Query:   180 XXXXXXXMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASIS 239
                    +M FVR        D     H     A S+++  +L+   +++++I +S  + 
Sbjct:   188 PSLLILTLMPFVRTYDTVIAGDK---KHLNGLSAISLIIVTYLMVVILVENIIGMSMPMK 244

Query:   240 YAS 242
               S
Sbjct:   245 ICS 247

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00005663001 SubName- Full=Chromosome undetermined scaffold_155, whole genome shotgun sequence; (527 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	433
pfam06813	248	pfam06813, Nodulin-like, Nodulin-like	1e-108
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	0.002

>gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like

 Score =  319 bits (819), Expect = e-108
 Identities = 123/248 (49%), Positives = 164/248 (66%)

Query: 11  PWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLAS 70
            W+GL AA+W+Q  AG  Y+F LYS +LKS LG++Q QL +LGVA D+G+N G L GLA+
Sbjct: 1   RWLGLVAAIWIQSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAA 60

Query: 71  NKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVT 130
              PPW+VL +G+   F GYGV WLAV+  +  LPYWLL +A+C+A NS  W  TA LVT
Sbjct: 61  EYLPPWVVLLVGAAMGFVGYGVQWLAVTGKIPGLPYWLLCLAICLAGNSICWFNTASLVT 120

Query: 131 NMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYF 190
            +RNFP SRG V GILKGY GLSAA++T++Y  +  N +S LLL+ A+    V LV +YF
Sbjct: 121 CIRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYF 180

Query: 191 VRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILL 250
           +RPC    GE  +    FL     SV L  +L+  +IL     LS++  YA   IM++LL
Sbjct: 181 IRPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVLLL 240

Query: 251 MAPLAIPV 258
           + PLA+P+
Sbjct: 241 LVPLAVPI 248

This family represents a conserved region within plant nodulin-like proteins. Length = 248

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 332 KKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDT--TIL 389
           K       +D+   E +    FW+L+L +F    SG+ ++      G + G+ D    + 
Sbjct: 186 KTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLA 245

Query: 390 LSLFSFCNFVGRLGGGVVSEHFVRL 414
           +S+ S  N  GR   G +S+   R 
Sbjct: 246 VSISSIFNGGGRPFLGALSDKIGRQ 270

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	433
PTZ00207	591	hypothetical protein; Provisional	100.0
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.91
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.89
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.84
PLN00028	476	nitrate transmembrane transporter; Provisional	99.84
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.84
PRK09705	393	cynX putative cyanate transporter; Provisional	99.83
PRK11663	434	regulatory protein UhpC; Provisional	99.81
PRK03545	390	putative arabinose transporter; Provisional	99.81
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.8
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.8
TIGR00893	399	2A0114 d-galactonate transporter.	99.79
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.79
PRK12307	426	putative sialic acid transporter; Provisional	99.79
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.78
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.77
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.77
TIGR00891	405	2A0112 putative sialic acid transporter.	99.77
PRK03699	394	putative transporter; Provisional	99.77
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.76
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.76
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.76
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.76
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.76
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.75
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.74
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.74
TIGR00895	398	2A0115 benzoate transport.	99.74
PRK10091	382	MFS transport protein AraJ; Provisional	99.74
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.73
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.71
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.71
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.7
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.7
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.68
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.67
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.67
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.66
PRK03893	496	putative sialic acid transporter; Provisional	99.66
PRK11043	401	putative transporter; Provisional	99.66
PRK10504	471	putative transporter; Provisional	99.66
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.66
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.65
TIGR00900	365	2A0121 H+ Antiporter protein.	99.65
PRK10642	490	proline/glycine betaine transporter; Provisional	99.65
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.64
PRK03633	381	putative MFS family transporter protein; Provision	99.64
KOG2532	466	consensus Permease of the major facilitator superf	99.64
TIGR00898	505	2A0119 cation transport protein.	99.64
PRK10133	438	L-fucose transporter; Provisional	99.63
PRK05122	399	major facilitator superfamily transporter; Provisi	99.63
PRK15075	434	citrate-proton symporter; Provisional	99.62
PRK12382	392	putative transporter; Provisional	99.6
PRK10054	395	putative transporter; Provisional	99.6
PRK09952	438	shikimate transporter; Provisional	99.6
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.59
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.59
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.58
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.57
PRK09874	408	drug efflux system protein MdtG; Provisional	99.56
TIGR00901	356	2A0125 AmpG-related permease.	99.56
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.53
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.53
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.52
PRK10489	417	enterobactin exporter EntS; Provisional	99.5
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.5
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.5
PRK09528	420	lacY galactoside permease; Reviewed	99.49
TIGR00805	633	oat sodium-independent organic anion transporter.	99.47
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.45
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.44
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.43
PRK11010	491	ampG muropeptide transporter; Validated	99.43
PRK15011	393	sugar efflux transporter B; Provisional	99.42
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.41
PRK11902	402	ampG muropeptide transporter; Reviewed	99.41
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.39
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.38
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.37
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.37
KOG0569	485	consensus Permease of the major facilitator superf	99.32
KOG2533	495	consensus Permease of the major facilitator superf	99.31
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.3
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.29
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.25
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.21
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.18
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.13
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.13
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.11
KOG2563	480	consensus Permease of the major facilitator superf	99.1
PRK15011	393	sugar efflux transporter B; Provisional	99.1
PRK10642	490	proline/glycine betaine transporter; Provisional	99.09
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.06
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.02
KOG0254	513	consensus Predicted transporter (major facilitator	99.02
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.01
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.01
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.0
PRK09669	444	putative symporter YagG; Provisional	99.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.99
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.97
PRK10489	417	enterobactin exporter EntS; Provisional	98.95
PF13347	428	MFS_2: MFS/sugar transport protein	98.93
PRK09528	420	lacY galactoside permease; Reviewed	98.93
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.92
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.92
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.91
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.9
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.89
PRK03545	390	putative arabinose transporter; Provisional	98.89
PRK05122	399	major facilitator superfamily transporter; Provisi	98.88
PRK09952	438	shikimate transporter; Provisional	98.88
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.88
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.86
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.86
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.85
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.82
PRK11010	491	ampG muropeptide transporter; Validated	98.82
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.81
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.81
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.79
PRK10429	473	melibiose:sodium symporter; Provisional	98.78
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.77
PRK03699	394	putative transporter; Provisional	98.77
PRK12382	392	putative transporter; Provisional	98.76
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.74
PRK15075	434	citrate-proton symporter; Provisional	98.72
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.71
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.7
PRK12307	426	putative sialic acid transporter; Provisional	98.68
PRK03633	381	putative MFS family transporter protein; Provision	98.68
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.67
PRK03893	496	putative sialic acid transporter; Provisional	98.67
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.67
PRK09705	393	cynX putative cyanate transporter; Provisional	98.66
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.66
PRK11043	401	putative transporter; Provisional	98.65
PRK10504	471	putative transporter; Provisional	98.65
TIGR00891	405	2A0112 putative sialic acid transporter.	98.65
TIGR00893	399	2A0114 d-galactonate transporter.	98.64
PRK10091	382	MFS transport protein AraJ; Provisional	98.64
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.63
PRK09848	448	glucuronide transporter; Provisional	98.62
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.62
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.61
TIGR00895	398	2A0115 benzoate transport.	98.6
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.6
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.59
PRK09874	408	drug efflux system protein MdtG; Provisional	98.58
TIGR00900	365	2A0121 H+ Antiporter protein.	98.57
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.56
PLN00028	476	nitrate transmembrane transporter; Provisional	98.55
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.55
PRK11462	460	putative transporter; Provisional	98.55
PRK11663	434	regulatory protein UhpC; Provisional	98.53
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.52
TIGR00901	356	2A0125 AmpG-related permease.	98.51
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.5
PRK11902	402	ampG muropeptide transporter; Reviewed	98.5
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.45
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.44
KOG2615	451	consensus Permease of the major facilitator superf	98.44
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.43
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.42
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.4
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.39
PRK10054	395	putative transporter; Provisional	98.37
PRK10133	438	L-fucose transporter; Provisional	98.37
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.34
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.34
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.34
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.31
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.31
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.29
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.29
TIGR00898	505	2A0119 cation transport protein.	98.28
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.27
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.26
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.26
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.22
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.21
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.19
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.18
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.16
KOG0569	485	consensus Permease of the major facilitator superf	98.14
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.14
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.13
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.13
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.13
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.12
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.1
PRK09848	448	glucuronide transporter; Provisional	98.09
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.09
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.08
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.96
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.96
PF13347	428	MFS_2: MFS/sugar transport protein	97.93
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.83
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.79
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.74
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.72
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.69
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.68
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.64
COG2211	467	MelB Na+/melibiose symporter and related transport	97.59
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.54
PRK10429	473	melibiose:sodium symporter; Provisional	97.54
PRK09669	444	putative symporter YagG; Provisional	97.53
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.47
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.42
KOG0254	513	consensus Predicted transporter (major facilitator	97.4
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.39
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.38
COG0477	338	ProP Permeases of the major facilitator superfamil	97.32
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.2
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.13
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.09
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	96.98
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.97
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	96.97
KOG2533	495	consensus Permease of the major facilitator superf	96.8
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.65
PRK11462	460	putative transporter; Provisional	96.61
COG2211	467	MelB Na+/melibiose symporter and related transport	96.58
PF12832	77	MFS_1_like: MFS_1 like family	96.51
KOG2532	466	consensus Permease of the major facilitator superf	96.37
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	96.36
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.25
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.24
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.24
KOG3762	618	consensus Predicted transporter [General function	96.09
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.08
KOG2816	463	consensus Predicted transporter ADD1 (major facili	95.63
KOG2816	463	consensus Predicted transporter ADD1 (major facili	95.52
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.15
PRK03612	521	spermidine synthase; Provisional	94.49
KOG3764	464	consensus Vesicular amine transporter [Intracellul	94.48
KOG3098	461	consensus Uncharacterized conserved protein [Funct	94.45
PRK15462	493	dipeptide/tripeptide permease D; Provisional	94.33
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	94.07
KOG3626	735	consensus Organic anion transporter [Secondary met	94.04
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	93.97
TIGR00805	633	oat sodium-independent organic anion transporter.	92.88
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	91.86
PTZ00207	591	hypothetical protein; Provisional	91.58
KOG3098	461	consensus Uncharacterized conserved protein [Funct	91.36
KOG2615	451	consensus Permease of the major facilitator superf	88.28
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	87.6
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	85.55
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	85.33
KOG2563	480	consensus Permease of the major facilitator superf	84.42
KOG3762	618	consensus Predicted transporter [General function	82.4
PF12832	77	MFS_1_like: MFS_1 like family	80.81

>PTZ00207 hypothetical protein; Provisional

Probab=100.00  E-value=2.3e-45  Score=385.93  Aligned_cols=376  Identities=19%  Similarity=0.222  Sum_probs=294.0

Q ss_pred             CCCChHhHHHHHHHHHHhhhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhhccccccccccccCchHHHHHHHHHHH
Q 013969            8 SRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACF   87 (433)
Q Consensus         8 ~~~~w~~l~~~~l~~~~~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~~~~~G~l~Dr~G~r~~~~ig~~l~~   87 (433)
                      ..+||..++++++++.+.|..|.|+++.+++++++|+|++|++++.+.+.....+.++.|++.||+|||+++.+|.++.+
T Consensus        23 e~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~  102 (591)
T PTZ00207         23 EPRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC  102 (591)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999776654444557789999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcC
Q 013969           88 FGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHN  167 (433)
Q Consensus        88 ~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  167 (433)
                      +|++++++...+... .++|.+++++++.|+|.++.++++..++.+|||++||+++|+..++.++|++++++++..++.+
T Consensus       103 iG~ll~ala~~~~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~  181 (591)
T PTZ00207        103 LGTLLFALTFQEVIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSD  181 (591)
T ss_pred             HHHHHHHHHhccccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988876444331 3589999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhcccCCCCCC---C---CCCCCc-----------------chHHHHHHHHHHHHHHHH
Q 013969          168 SSSKLLLVLAVGVPAVCLVMMYFVRPCTPASG---E---DSAAPS-----------------HFLFTQAASVVLGFFLLT  224 (433)
Q Consensus       168 ~~~~~l~~~a~~~~~v~l~~~~~~r~~~~~~~---~---~~~~~~-----------------~~~~~~~~~~~l~~~l~~  224 (433)
                      +++.+++++++++.++++++..++|++|++..   +   +++++.                 +|...+.+++++++|+++
T Consensus       182 ~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~  261 (591)
T PTZ00207        182 NTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPL  261 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHH
Confidence            88899999999999999999999999976532   1   122222                 566777788899999999


Q ss_pred             HHHhhccccCchhHHHHHHHHHH-HHHHhh-hhhhhhhhhhccccCcccccccCCCCCcccccCCCCCCCCCCCCCCCCC
Q 013969          225 TTILDHMIPLSASISYASLFIMI-ILLMAP-LAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSS  302 (433)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~-~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  302 (433)
                      +++++++++++++.+...+++++ +++..| +.+|.+. +.+++++++ .|        .   + ++++. ++       
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~-~~~~~~~~~-~~--------~---~-~~~~~-~~-------  319 (591)
T PTZ00207        262 QGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTT-FDGKRPHDD-SD--------G---K-AKEHV-EA-------  319 (591)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCcCCC-cc--------c---c-ccccc-cc-------
Confidence            99999999999999999988877 667778 7788763 111111000 00        0   0 00000 00       


Q ss_pred             CCCCCCCCCCCChhhHHHHHhhcccccccccCCCCCCCCCcHHHHhhhhhHHHHHHHHHhhcccceeeecchhhHHHhh-
Q 013969          303 TTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQ-  381 (433)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g~~~i~n~~~i~~s~-  381 (433)
                       +.+. .+  ++.   ++.    +...  +.+.|+++  .|++|++++.|||++|++++|+.|+|++++||++||++++ 
T Consensus       320 -~~~~-~~--~~~---~~~----~~~~--~~~~P~~~--~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~  384 (591)
T PTZ00207        320 -GEEV-SA--AED---KVV----ETDV--DYIAPQFQ--ETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALA  384 (591)
T ss_pred             -cccc-cc--ccc---ccc----cccc--cCCCCCCc--chHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhc
Confidence             0000 00  000   000    0000  10225554  3999999999999999999999999999999999999999 


Q ss_pred             cC-Ccc--ch-hHHHHHHhHHHHhhhcccchHHHHHhhhccCcce
Q 013969          382 GV-HDT--TI-LLSLFSFCNFVGRLGGGVVSEHFVRLVQSELGNE  422 (433)
Q Consensus       382 G~-~~~--~~-~vsl~si~n~~GRl~~G~lsD~~~~~~~~~~~~~  422 (433)
                      |+ ++.  .. +|+++|++|++||+++|+++ .+.+|++.+.|.|
T Consensus       385 g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~p  428 (591)
T PTZ00207        385 GEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVP  428 (591)
T ss_pred             CCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccc
Confidence            87 333  33 89999999999999999997 7777777665544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=100.00  E-value=3e-37  Score=292.25  Aligned_cols=247  Identities=48%  Similarity=0.864  Sum_probs=232.4

Q ss_pred             ChHhHHHHHHHHHHhhhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhhccccccccccccCchHHHHHHHHHHHHHH
Q 013969           11 PWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPPWLVLFIGSLACFFGY   90 (433)
Q Consensus        11 ~w~~l~~~~l~~~~~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~   90 (433)
                      ||..++++++++.++|+.|.|++|+|++++++|+|++|++.++++..+|..++++.|.++||+|||.++.+|+++..+||
T Consensus         1 rW~~l~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY   80 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGY   80 (250)
T ss_pred             ChhhHHHHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcCChh
Q 013969           91 GVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSS  170 (433)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~  170 (433)
                      .++++...+..+++++|+++++.+++|.|.++.+++++.++.|+||++||+++|+.++++|||++++++++..+++++..
T Consensus        81 ~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~  160 (250)
T PF06813_consen   81 GLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPS  160 (250)
T ss_pred             HHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChH
Confidence            99999998887656799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCC--CCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHH
Q 013969          171 KLLLVLAVGVPAVCLVMMYFVRPCTPA--SGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMII  248 (433)
Q Consensus       171 ~~l~~~a~~~~~v~l~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (433)
                      .|++++++.+.++++++.+++|+.|+.  ..++++|+.++...+.+.+++++|+++.+++++++++++..+....+++++
T Consensus       161 ~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~l  240 (250)
T PF06813_consen  161 SFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFLFFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLL  240 (250)
T ss_pred             HHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999863  234456777888888888999999999999999999999999999999999


Q ss_pred             HHHhhhhhh
Q 013969          249 LLMAPLAIP  257 (433)
Q Consensus       249 ll~~~~~~~  257 (433)
                      ++.+|+.+|
T Consensus       241 lL~~Pl~i~  249 (250)
T PF06813_consen  241 LLLLPLAIP  249 (250)
T ss_pred             HHHhhhhcc
Confidence            999999876

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.91  E-value=4.6e-23  Score=205.13  Aligned_cols=268  Identities=20%  Similarity=0.289  Sum_probs=194.0

Q ss_pred             CChHhHHHHHHHHHHhhhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHH
Q 013969           10 PPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFF   88 (433)
Q Consensus        10 ~~w~~l~~~~l~~~~~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~   88 (433)
                      ++|..++..+...+..+..|.++.+.|++++++|+|.++++++.+...++.. ..++.|++.||+|+|+++.++.++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~   80 (377)
T TIGR00890         1 RWWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGL   80 (377)
T ss_pred             CeEEEeHHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHH
Confidence            3566666666666777889999999999999999999999998888888885 599999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcC-
Q 013969           89 GYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHN-  167 (433)
Q Consensus        89 g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-  167 (433)
                      +...+...       ++++.+++.+++.|++.+..+......+.+|||++||++.++...+.++|..+.+++...+... 
T Consensus        81 ~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  153 (377)
T TIGR00890        81 GFTFYAIA-------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLE  153 (377)
T ss_pred             HHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhcc
Confidence            88765542       3577887888889999888887888889999999999999999999999998887777665432 


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHH
Q 013969          168 SSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMI  247 (433)
Q Consensus       168 ~~~~~l~~~a~~~~~v~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  247 (433)
                      +|+..+.+.++++++..++..+++++                                                      
T Consensus       154 ~~~~~f~~~~~~~~~~~~~~~~~~~~------------------------------------------------------  179 (377)
T TIGR00890       154 GVPAAFIYMGIIFLLVIVLGAFLIGY------------------------------------------------------  179 (377)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHheec------------------------------------------------------
Confidence            22222222222222111111111110                                                      


Q ss_pred             HHHHhhhhhhhhhhhhccccCcccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHhhccc
Q 013969          248 ILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGEG  327 (433)
Q Consensus       248 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (433)
                                         +++.                     +..+   +             ++             
T Consensus       180 -------------------~~~~---------------------~~~~---~-------------~~-------------  190 (377)
T TIGR00890       180 -------------------PPGQ---------------------LIKT---N-------------IE-------------  190 (377)
T ss_pred             -------------------Cchh---------------------cccc---C-------------cc-------------
Confidence                               0000                     0000   0             00             


Q ss_pred             ccccccCCCCCCCCCcHHHHhhhhhHHHHHHHHHhhcccceeeecchhhHHHhhcCCcc--chhHHHHHHhHHHHhhhcc
Q 013969          328 AVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDT--TILLSLFSFCNFVGRLGGG  405 (433)
Q Consensus       328 ~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g~~~i~n~~~i~~s~G~~~~--~~~vsl~si~n~~GRl~~G  405 (433)
                          .   +  .++.+.++.+|++++|.+.+.+++.......+.+...++.++.|.++.  ....+++++.+.+|+++.|
T Consensus       191 ----~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  261 (377)
T TIGR00890       191 ----V---S--VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLG  261 (377)
T ss_pred             ----c---c--hhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                0   0  011245688899999999888777666655555666777777787654  4688899999999999999


Q ss_pred             cchHHHHHhhh
Q 013969          406 VVSEHFVRLVQ  416 (433)
Q Consensus       406 ~lsD~~~~~~~  416 (433)
                      +++||++||..
T Consensus       262 ~l~dr~g~~~~  272 (377)
T TIGR00890       262 ALSDKIGRQKT  272 (377)
T ss_pred             HHHHHHhhhhh
Confidence            99999998754

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.89  E-value=2.2e-22  Score=210.10  Aligned_cols=314  Identities=19%  Similarity=0.171  Sum_probs=221.2

Q ss_pred             CCCCChHhHHHHHHHH-HHhhhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHH
Q 013969            7 GSRPPWVGLGAAVWVQ-IAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSL   84 (433)
Q Consensus         7 ~~~~~w~~l~~~~l~~-~~~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~   84 (433)
                      .....|.+++++++++ +..|..+.++++.+.++++++-+.+|++++.+...-... .+|+.+.+.||||.|.++++|.+
T Consensus        40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~  119 (509)
T KOG2504|consen   40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL  119 (509)
T ss_pred             CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence            3456799999999877 456999999999999999999999999998776655554 59999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCchhHHHHHH-HHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHH
Q 013969           85 ACFFGYGVLWLAVSRTVESLPYWLLWI-ALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNM  163 (433)
Q Consensus        85 l~~~g~~~~~~~~~~~~~~~~~~~l~~-~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~  163 (433)
                      +.++|+++.+++       .++|++++ ++++.|+|.|+.|.+++..+.+||+|||++|+|+..+|.|+|..+++++...
T Consensus       120 v~~~g~~lssF~-------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~  192 (509)
T KOG2504|consen  120 VAALGLLLSSFA-------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKY  192 (509)
T ss_pred             HHHHHHHHHHHH-------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHH
Confidence            999999966653       35899888 8999999999999999999999999999999999999999999999999999


Q ss_pred             HhcC-ChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHH
Q 013969          164 LLHN-SSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYAS  242 (433)
Q Consensus       164 ~~~~-~~~~~l~~~a~~~~~v~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  242 (433)
                      +++. +|++.++..+.+. +-++.+...+|+..+......+.+.+                         +         
T Consensus       193 l~~~~G~r~~~l~~~~~~-l~~~~~~~~~rp~~~~~~~~~~~~~~-------------------------~---------  237 (509)
T KOG2504|consen  193 LLSKYGWRGALLIFGGIS-LNVLVAGALLRPLSPPKKPNEEKDLR-------------------------N---------  237 (509)
T ss_pred             HHHHhCcHHHHHHHHHHH-HHHHHHHHHcCCCCcCCCchhhhhhc-------------------------c---------
Confidence            9975 6666666666655 44455556666654332211000000                         0         


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhccccCcccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHH
Q 013969          243 LFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLL  322 (433)
Q Consensus       243 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  322 (433)
                                    +       ....+..         +     .+.+....+   ++.........   +++   +.. 
T Consensus       238 --------------~-------~~~~~~~---------~-----~~~~~~~~~---~~~~~~~~~~~---~~~---~~~-  272 (509)
T KOG2504|consen  238 --------------S-------AASVEST---------P-----KPVELRISE---RDSGLKKLSLS---NLA---TLK-  272 (509)
T ss_pred             --------------c-------ccccccc---------c-----ccccccccc---CCCCCCccccc---chh---hhh-
Confidence                          0       0000000         0     000000000   00000000000   000   000 


Q ss_pred             hhcccccccccCCCCCCCCCc--HHHHhhhhhHHHHHHHHHhhcccceeeecchhhHHHhhcCCcc--chhHHHHHHhHH
Q 013969          323 AEGEGAVRRKKRRPKRGEDFK--FTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDT--TILLSLFSFCNF  398 (433)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~t--~~~~l~t~~Fwll~~~~~~~~g~g~~~i~n~~~i~~s~G~~~~--~~~vsl~si~n~  398 (433)
                       +  .+.  +.+....+...+  -.+.+|++.|+.+.+...+....-......+..++++.|+++.  +.+++++++.|.
T Consensus       273 -~--~~~--~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i  347 (509)
T KOG2504|consen  273 -R--GPD--KWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDI  347 (509)
T ss_pred             -h--CCc--cccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhh
Confidence             0  000  000000111111  2689999999999999988888888888899999999999764  789999999999


Q ss_pred             HHhhhcccchHHHH
Q 013969          399 VGRLGGGVVSEHFV  412 (433)
Q Consensus       399 ~GRl~~G~lsD~~~  412 (433)
                      +||++.|++.|+..
T Consensus       348 ~gRi~~G~laD~~~  361 (509)
T KOG2504|consen  348 IGRIILGLLADKPG  361 (509)
T ss_pred             hhhhhhhhhcCccc
Confidence            99999999999987

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.84  E-value=8.7e-20  Score=186.80  Aligned_cols=181  Identities=9%  Similarity=-0.041  Sum_probs=140.2

Q ss_pred             CCChHhHHHHHHHHHHhh-hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHH
Q 013969            9 RPPWVGLGAAVWVQIAAG-NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLAC   86 (433)
Q Consensus         9 ~~~w~~l~~~~l~~~~~g-~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~   86 (433)
                      +.+|..+...++..++.. ..+..+...|.+++++|+|.++++++.+...++.. .+++.|++.||+|||+++.++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            346776666666544433 46777888899999999999999998888888875 4899999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969           87 FFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      +++..+..+.       ++++.+++.+++.|++.+..+......+.+|||+ +||+++|+...+.++|.++.+++...+.
T Consensus        84 ~~~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  156 (412)
T TIGR02332        84 GIASTATMFA-------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL  156 (412)
T ss_pred             HHHHHHHHHh-------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988866542       2467888889999999988777777889999995 6999999999999999988877776654


Q ss_pred             c-------CChhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 013969          166 H-------NSSSKLLLVLAVGVPAVCLVMMYFVRPCTP  196 (433)
Q Consensus       166 ~-------~~~~~~l~~~a~~~~~v~l~~~~~~r~~~~  196 (433)
                      +       .+|+..+.+.++..+++.++..+++|+.|+
T Consensus       157 ~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       157 ALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             hCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            3       145555555566556666666666666543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.84  E-value=1.6e-19  Score=188.26  Aligned_cols=141  Identities=13%  Similarity=0.000  Sum_probs=103.6

Q ss_pred             ChHhHHHHHHHH-HHhhhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHH
Q 013969           11 PWVGLGAAVWVQ-IAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFF   88 (433)
Q Consensus        11 ~w~~l~~~~l~~-~~~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~   88 (433)
                      +|..+..+.+.. +.....+.++.+.|.+++++|+|.++.+++.+...++..+ .++.|++.||+|+|+++.++.++.++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~  113 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAP  113 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            343333333333 2334467888888999999999999999987777777754 79999999999999999999988888


Q ss_pred             HHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHH
Q 013969           89 GYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTE  159 (433)
Q Consensus        89 g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~  159 (433)
                      +.++..+.       .+++.+++.+++.|++.+. +.+....+.+||| ++||+++|+..+...+|+.+.+.
T Consensus       114 ~~~~~~~~-------~s~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~  177 (476)
T PLN00028        114 AVFCMSLV-------SSATGFIAVRFFIGFSLAT-FVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQL  177 (476)
T ss_pred             HHHHHHHh-------cCHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHH
Confidence            87755442       2356666777788877764 3445566889998 56999999987666666655533

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.84  E-value=3.8e-20  Score=192.40  Aligned_cols=165  Identities=13%  Similarity=0.040  Sum_probs=124.0

Q ss_pred             hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           27 NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        27 ~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      ....+++..|++++++|+|.++.+++.+...++.. ..++.|++.||+|+|+++.++.++.+++.+.+.......  +++
T Consensus        44 ~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~  121 (467)
T PRK09556         44 IRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSG--SVS  121 (467)
T ss_pred             HhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcc--cch
Confidence            35678888999999999999999998888878875 599999999999999999999998888777665533222  235


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhc----CChhHHHHHHHHHH
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLH----NSSSKLLLVLAVGV  180 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~----~~~~~~l~~~a~~~  180 (433)
                      ++.+++++++.|++.+....+..+.+.+||| ++||+++|+..++.++|.++.+++......    .+|+..+.+.+++.
T Consensus       122 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~  201 (467)
T PRK09556        122 LGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIA  201 (467)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHH
Confidence            7888889999999988877788899999998 469999999998888999887666543322    13334444444444


Q ss_pred             HHHHHHHHhhccc
Q 013969          181 PAVCLVMMYFVRP  193 (433)
Q Consensus       181 ~~v~l~~~~~~r~  193 (433)
                      ++++++..+++|+
T Consensus       202 ~~~~i~~~~~~~~  214 (467)
T PRK09556        202 LIIGFIGLRYGSD  214 (467)
T ss_pred             HHHHHHHHHhCCC
Confidence            4444444333333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.83  E-value=2.9e-19  Score=181.68  Aligned_cols=131  Identities=12%  Similarity=-0.021  Sum_probs=111.7

Q ss_pred             hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           27 NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        27 ~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      ..++++...|++++++|+|.+|.+++.+...++.. .+++.|++.||+|+|+++..+.++.+++.+...+.       ++
T Consensus        24 ~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a-------~~   96 (393)
T PRK09705         24 LLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY-------PQ   96 (393)
T ss_pred             hhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC-------cc
Confidence            35789999999999999999999998888777775 59999999999999999999999999999866542       34


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                      ++.+.+.+++.|+|.+..+......+.+|||++|++++|+..++..+|..+.+.+...+
T Consensus        97 ~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l  155 (393)
T PRK09705         97 SALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWL  155 (393)
T ss_pred             hHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777889999999998887778888999998999999998887777777766555443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.81  E-value=2e-18  Score=177.78  Aligned_cols=133  Identities=12%  Similarity=0.115  Sum_probs=111.4

Q ss_pred             hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           27 NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        27 ~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      ..+.++.+.|++.+++|+|..+.+++.+...++.. ..++.|++.||+|+|+++.++.++.+++.+++...       ++
T Consensus        38 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~  110 (434)
T PRK11663         38 TRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS-------SS  110 (434)
T ss_pred             hhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH-------hH
Confidence            35677888999999999999999998887778775 59999999999999999999999999888765542       24


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      ++.+++.+++.|++.|..+.+....+.+|||+ +||+++|+..++.++|+++.+++...+.+
T Consensus       111 ~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  172 (434)
T PRK11663        111 LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL  172 (434)
T ss_pred             HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777777788888887777778899999995 69999999999999999888777766553

>PRK03545 putative arabinose transporter; Provisional

Probab=99.81  E-value=2.4e-18  Score=174.30  Aligned_cols=150  Identities=9%  Similarity=-0.009  Sum_probs=115.6

Q ss_pred             CCChHhHHHHHHHHH-HhhhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHH
Q 013969            9 RPPWVGLGAAVWVQI-AAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLAC   86 (433)
Q Consensus         9 ~~~w~~l~~~~l~~~-~~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~   86 (433)
                      .++|..+....+..+ .....|....+.|++++++|+|+++++++.+...++.. ..++.|++.||+|+|+++.++.++.
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   84 (390)
T PRK03545          5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF   84 (390)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            345654333333332 23334555566789999999999999998777777764 5888999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969           87 FFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      +++.+.....       ++++.+++.+++.|++.+..+....+.+.+++| ++||++.|+...+.++|.++.+++...+.
T Consensus        85 ~~~~~~~~~~-------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~  157 (390)
T PRK03545         85 IASHVLSALA-------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG  157 (390)
T ss_pred             HHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            9888765542       347888888888888888777777888999998 57999999999999999988877665543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.80  E-value=4.7e-18  Score=176.25  Aligned_cols=163  Identities=14%  Similarity=0.081  Sum_probs=125.6

Q ss_pred             CCChHhHHHHHHHHHH-hhhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHH
Q 013969            9 RPPWVGLGAAVWVQIA-AGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLAC   86 (433)
Q Consensus         9 ~~~w~~l~~~~l~~~~-~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~   86 (433)
                      .++|.+++++++.+.. .+..+.++.+.|++++++|+|.++.+++.+...++.. .+++.|++.||+|+|++++++.++.
T Consensus        15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   94 (455)
T TIGR00892        15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA   94 (455)
T ss_pred             CcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence            4578888887776643 3456778999999999999999999997776666654 5899999999999999999999888


Q ss_pred             HHHHHHHHHHHhcccCchhHHHHHH-HHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969           87 FFGYGVLWLAVSRTVESLPYWLLWI-ALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~l~~-~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      +++.+.....       .+++.+++ .+++.|++.+..+.+....+.+|||++|+++.|+..++.++|..+.+++...+.
T Consensus        95 ~~~~~~~~~~-------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~  167 (455)
T TIGR00892        95 SLGMILASFS-------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLF  167 (455)
T ss_pred             HHHHHHHHHh-------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            8877765442       23566654 457778888766667777888999988999999999999999998888776665


Q ss_pred             cC-ChhHHHHHHHH
Q 013969          166 HN-SSSKLLLVLAV  178 (433)
Q Consensus       166 ~~-~~~~~l~~~a~  178 (433)
                      +. +|+..++..++
T Consensus       168 ~~~gwr~~f~~~~~  181 (455)
T TIGR00892       168 ESFGWRGSFLILGG  181 (455)
T ss_pred             HHhChHHHHHHHHH
Confidence            42 34444443333

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.80  E-value=4.6e-18  Score=172.75  Aligned_cols=150  Identities=14%  Similarity=0.033  Sum_probs=122.0

Q ss_pred             CCCCCChHhHHHHHHHHHHhh-hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHH
Q 013969            6 AGSRPPWVGLGAAVWVQIAAG-NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGS   83 (433)
Q Consensus         6 ~~~~~~w~~l~~~~l~~~~~g-~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~   83 (433)
                      ...+++|..++.+++..+..+ ..+.++...|.+.+++|+|.++.+++.+...++.. ..++.|++.||+|+|+++.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   87 (406)
T PRK11551          8 ASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSV   87 (406)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            344677888777777665554 47788999999999999999999998888888875 4899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHH
Q 013969           84 LACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYN  162 (433)
Q Consensus        84 ~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~  162 (433)
                      ++..++.+.....       .+++.+.+.+++.|++.+..+......+.+++| ++||++.|+...+..+|+.+.+.+..
T Consensus        88 ~~~~~~~~~~~~~-------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  160 (406)
T PRK11551         88 ALFGLFSLATAQA-------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGV  160 (406)
T ss_pred             HHHHHHHHHHHHh-------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877654431       246777778889999888887777888999998 56999999999988888877655543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.79  E-value=3.3e-18  Score=170.53  Aligned_cols=267  Identities=17%  Similarity=0.130  Sum_probs=183.9

Q ss_pred             hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhH
Q 013969           28 AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPY  106 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~  106 (433)
                      .+.++...|.+++++|+|..+.+++.+...++.. ..++.|++.||+|+|+++.++.++.+++...+...       +++
T Consensus        10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~   82 (399)
T TIGR00893        10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-------GAY   82 (399)
T ss_pred             HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-------cCH
Confidence            4667778888999999999999998888888875 48999999999999999999999988888766542       247


Q ss_pred             HHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHH
Q 013969          107 WLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVC  184 (433)
Q Consensus       107 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~  184 (433)
                      +.+++.+++.|++.+..+.+....+.+++| ++|+++.|+.....++|..+.+++...+.+. +|+..+.+.+++..+..
T Consensus        83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  162 (399)
T TIGR00893        83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG  162 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            788888899999998888888889999998 5699999999999999998888777665542 33333333333333333


Q ss_pred             HHHHhhcccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhhhhhhhhhhhhc
Q 013969          185 LVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICR  264 (433)
Q Consensus       185 l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~  264 (433)
                      ++..+++++.+++....   .                                                           
T Consensus       163 ~~~~~~~~~~~~~~~~~---~-----------------------------------------------------------  180 (399)
T TIGR00893       163 VLWLKFIPDPPQKAKWL---T-----------------------------------------------------------  180 (399)
T ss_pred             HHhhheecCCCCccccC---C-----------------------------------------------------------
Confidence            22222222221110000   0                                                           


Q ss_pred             cccCcccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHhhcccccccccCCCCCCCCCcH
Q 013969          265 KRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKF  344 (433)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  344 (433)
                         ++.+                  ++..+.   .         .++ .+            .    ++  +...+..+.
T Consensus       181 ---~~~~------------------~~~~~~---~---------~~~-~~------------~----~~--~~~~~~~~~  208 (399)
T TIGR00893       181 ---EEEK------------------YIVVGG---L---------LAE-QQ------------G----KG--PSTPKKYQI  208 (399)
T ss_pred             ---HHHH------------------hhcchh---h---------ccc-cc------------c----cc--ccCCCccch
Confidence               0000                  000000   0         000 00            0    00  000112356


Q ss_pred             HHHhhhhhHHHHHHHHHhhcccceeeecchhhHHHh-hcCCcc--chhHHHHHHhHHHHhhhcccchHHHHHhh
Q 013969          345 TEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIA-QGVHDT--TILLSLFSFCNFVGRLGGGVVSEHFVRLV  415 (433)
Q Consensus       345 ~~~l~t~~Fwll~~~~~~~~g~g~~~i~n~~~i~~s-~G~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~~  415 (433)
                      ++.+|++++|.+.+..++.......+......+.++ .|.+..  ....++.++++.+|+++.|+++||+++|.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       209 KELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            788999999999988888777777777777777665 466543  56788899999999999999999999885

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.79  E-value=4.2e-18  Score=176.32  Aligned_cols=178  Identities=14%  Similarity=0.087  Sum_probs=121.4

Q ss_pred             ChHhHHHHHHHHHHhh-hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHH
Q 013969           11 PWVGLGAAVWVQIAAG-NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFF   88 (433)
Q Consensus        11 ~w~~l~~~~l~~~~~g-~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~   88 (433)
                      +|.++...++...... ..+.++...|.++++ |+|+.+.+++.+...++.. .+++.|++.||+|+|+++.++.++.++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i  105 (452)
T PRK11273         27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  105 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHH
Confidence            3554444433332222 234577788888888 9999999998887778775 599999999999999999999999988


Q ss_pred             HHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHh--
Q 013969           89 GYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLL--  165 (433)
Q Consensus        89 g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~--  165 (433)
                      +.+.+.+....   ..+++.+++.+++.|++.+..+.+....+.+|||+ +||+++|+...+.++|+.+.+++.....  
T Consensus       106 ~~~~~~~~~~~---~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~  182 (452)
T PRK11273        106 VMLFMGFVPWA---TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW  182 (452)
T ss_pred             HHHHHHhhhcc---cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            88766553111   12356666677788888887777677888999985 5999999998888888777666543221  


Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHhhcc
Q 013969          166 HNSSSKLLLVLAVGVPAVCLVMMYFVR  192 (433)
Q Consensus       166 ~~~~~~~l~~~a~~~~~v~l~~~~~~r  192 (433)
                      ..+|+..+.+.+++..++.++..+++|
T Consensus       183 ~~gw~~~f~i~~~~~~~~~~l~~~~~~  209 (452)
T PRK11273        183 FNDWHAALYMPAFAAILVALFAFAMMR  209 (452)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            223444444444433333333333343

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.79  E-value=4.6e-18  Score=173.84  Aligned_cols=158  Identities=18%  Similarity=0.110  Sum_probs=126.0

Q ss_pred             CccccCCCCCChHhHHHHHHHHHHhhh-hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHH
Q 013969            1 MVTLKAGSRPPWVGLGAAVWVQIAAGN-AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLV   78 (433)
Q Consensus         1 ~~~~~~~~~~~w~~l~~~~l~~~~~g~-~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~   78 (433)
                      |+.+.+..+.+|..++.+.+..+..+. .+..+...|.+++++|+|..+.+++.+...++..+ +++.|++.||+|+|++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~   85 (426)
T PRK12307          6 FPWYSEITRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPL   85 (426)
T ss_pred             ccccccCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence            445555666677766666665555544 45556677788999999999999988888888754 8999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHH
Q 013969           79 LFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVF  157 (433)
Q Consensus        79 ~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~  157 (433)
                      +.++.++.+++.+.....       .+++.+++.+++.|+|.+..+......+.+++| ++|+++.|+...+.++|..+.
T Consensus        86 l~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~  158 (426)
T PRK12307         86 MMWSIVAYSVGTGLSGLA-------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIA  158 (426)
T ss_pred             HHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHH
Confidence            999999999988765542       247788888999999988888888888999998 459999999999999998887


Q ss_pred             HHHHHHHh
Q 013969          158 TEIYNMLL  165 (433)
Q Consensus       158 ~~l~~~~~  165 (433)
                      +.+...+.
T Consensus       159 ~~l~~~l~  166 (426)
T PRK12307        159 AYFMPSFA  166 (426)
T ss_pred             HHHHHHHc
Confidence            76655444

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.78  E-value=1.2e-18  Score=172.91  Aligned_cols=163  Identities=17%  Similarity=0.154  Sum_probs=141.9

Q ss_pred             hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhH
Q 013969           28 AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPY  106 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~  106 (433)
                      --.|++..|.++++.++|.+|++.+.+...+...+ -.+.|.++||.+||+.+.+|.++.++..+++.+.       +++
T Consensus        45 RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs-------~s~  117 (448)
T COG2271          45 RKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS-------PSL  117 (448)
T ss_pred             HHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh-------hHH
Confidence            44799999999999999999999999888887754 7999999999999999999999999988877652       356


Q ss_pred             HHHHHHHHHHHhchhhhhhhHHHHHhhcccCC-chhHHHHHHhhhhhHHHHHHHHH--HHHhc-CChhHHHHHHHHHHHH
Q 013969          107 WLLWIALCVATNSSAWLGTAVLVTNMRNFPLS-RGTVAGILKGYGGLSAAVFTEIY--NMLLH-NSSSKLLLVLAVGVPA  182 (433)
Q Consensus       107 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~--~~~~~-~~~~~~l~~~a~~~~~  182 (433)
                      +.+.++.++-|.-+|+...++.+++++|||++ ||+..++-++..++|+++.+++.  ..+.. .+|+..+++-+++.++
T Consensus       118 ~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaii  197 (448)
T COG2271         118 FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAII  197 (448)
T ss_pred             HHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            77777888888888888999999999999965 99999999999999999999998  44443 4788888899999999


Q ss_pred             HHHHHHhhcccCCCC
Q 013969          183 VCLVMMYFVRPCTPA  197 (433)
Q Consensus       183 v~l~~~~~~r~~~~~  197 (433)
                      ++++.++.+||-|++
T Consensus       198 val~~~~~~rd~Pqs  212 (448)
T COG2271         198 VALILLFLLRDRPQS  212 (448)
T ss_pred             HHHHHHHHhCCCccc
Confidence            999999999887764

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.77  E-value=1.3e-17  Score=172.99  Aligned_cols=288  Identities=11%  Similarity=0.018  Sum_probs=186.5

Q ss_pred             CCCCCChHhHHHHHHHHHHh-hhhhhhhccHHHHHH----------------------HhCCCHHHHHHHHHHHHHHhh-
Q 013969            6 AGSRPPWVGLGAAVWVQIAA-GNAYNFPLYSHSLKS----------------------VLGFNQHQLTMLGVANDIGEN-   61 (433)
Q Consensus         6 ~~~~~~w~~l~~~~l~~~~~-g~~y~~s~~~~~l~~----------------------~~g~s~~~~~~i~~~~~~~~~-   61 (433)
                      ...+.||.++...++....+ ...-.+++-.+.+++                      +++++..+.+.+.+...++.. 
T Consensus        12 ~~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~   91 (465)
T TIGR00894        12 YFCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQII   91 (465)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHH
Confidence            34456676655555444322 223345555555554                      789999999998888888875 


Q ss_pred             ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCch
Q 013969           62 VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRG  140 (433)
Q Consensus        62 ~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG  140 (433)
                      .++++|++.||+|+|+++.++.++.+++.++......     .+++.+++.+++.|++.+..+......+.+||| ++||
T Consensus        92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~  166 (465)
T TIGR00894        92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG-----GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERS  166 (465)
T ss_pred             HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH-----cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHH
Confidence            4999999999999999999999988887765543221     125667778999999999888888899999999 5699


Q ss_pred             hHHHHHHhhhhhHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcchHHHHHHHHHH
Q 013969          141 TVAGILKGYGGLSAAVFTEIYNMLLHN--SSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVL  218 (433)
Q Consensus       141 ~a~gi~~~~~glg~~i~~~l~~~~~~~--~~~~~l~~~a~~~~~v~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l  218 (433)
                      ++.|+..++..+|.++.+++...+...  +|+..+.+.++..++..++...+.++.|+....                  
T Consensus       167 ~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~------------------  228 (465)
T TIGR00894       167 RLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC------------------  228 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCC------------------
Confidence            999999999999999888887765532  333333333332222222222222211110000                  


Q ss_pred             HHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCcccccccCCCCCcccccCCCCCCCCCCCCC
Q 013969          219 GFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLD  298 (433)
Q Consensus       219 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  298 (433)
                                                                                                      
T Consensus       229 --------------------------------------------------------------------------------  228 (465)
T TIGR00894       229 --------------------------------------------------------------------------------  228 (465)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCChhhHHHHHhhcccccccccCCCCCCCCCcHHHHhhhhhHHHHHHHHHhhcccceeeecchhhHH
Q 013969          299 PSSSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIG  378 (433)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g~~~i~n~~~i~  378 (433)
                                    +++.|.+...++.++    +++ +. .....+++.++++.+|.+++..++.......+...+..+.
T Consensus       229 --------------~~~~~~~~i~~~~~~----~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l  288 (465)
T TIGR00894       229 --------------ISKFEKKYINSSLQG----QKG-ST-RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFI  288 (465)
T ss_pred             --------------CCHHHHHHHHhhccc----ccC-CC-CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          000000000000000    000 00 0123578999999999999888777666656666666666


Q ss_pred             Hh-hcCCcc--chhHHHHHHhHHHHhhhcccchHHHHHhhh
Q 013969          379 IA-QGVHDT--TILLSLFSFCNFVGRLGGGVVSEHFVRLVQ  416 (433)
Q Consensus       379 ~s-~G~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~~~  416 (433)
                      ++ +|.+..  ....++..++..+++++.|+++||+.+|..
T Consensus       289 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~  329 (465)
T TIGR00894       289 SWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKT  329 (465)
T ss_pred             HHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            55 477654  467778899999999999999999986643

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.77  E-value=1.5e-17  Score=171.34  Aligned_cols=146  Identities=16%  Similarity=0.112  Sum_probs=111.7

Q ss_pred             hHhHHHHHHHH-HHhhhhhhhhccHHHHHH-HhCCCHHHHHHHHHHHHHHh-hccccccccccccCchHHHHHHHHHHHH
Q 013969           12 WVGLGAAVWVQ-IAAGNAYNFPLYSHSLKS-VLGFNQHQLTMLGVANDIGE-NVGLLPGLASNKFPPWLVLFIGSLACFF   88 (433)
Q Consensus        12 w~~l~~~~l~~-~~~g~~y~~s~~~~~l~~-~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~l~~~   88 (433)
                      |+.+..+.+.. .+...-+.++...+.+.+ ++|+|++|.+++.+...++. ...++.|++.||+|+|+++.++.++.++
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            45666666644 334557888888888865 89999999999777665655 4568889999999999999999999988


Q ss_pred             HHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHH
Q 013969           89 GYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEI  160 (433)
Q Consensus        89 g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l  160 (433)
                      ..+.+.+...+.  .++++.+++.+++.|++ +..+.+..+.+.+|||+ +||+++|+..+..++|..+...+
T Consensus       113 ~~~~~~~a~~~~--~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l  182 (462)
T PRK15034        113 PCVWLGIAVQNP--NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV  182 (462)
T ss_pred             HHHHHHHHHccc--CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH
Confidence            887666533222  23588888899999987 56788889999999995 59999999875555666655433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.77  E-value=3.6e-17  Score=164.87  Aligned_cols=155  Identities=17%  Similarity=0.161  Sum_probs=127.9

Q ss_pred             ccCCCCCChHhHHHHHHHHHHhh-hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHH
Q 013969            4 LKAGSRPPWVGLGAAVWVQIAAG-NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFI   81 (433)
Q Consensus         4 ~~~~~~~~w~~l~~~~l~~~~~g-~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~i   81 (433)
                      +++..+++|..+....+..+..+ ..+.++...|++++++|+|.++++++.+...++.. ..++.|++.||+|+|+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~   82 (405)
T TIGR00891         3 YRHLTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVT   82 (405)
T ss_pred             CCcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            34566788988777777665554 46778888999999999999999998877777775 59999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHH
Q 013969           82 GSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEI  160 (433)
Q Consensus        82 g~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l  160 (433)
                      +.++.+++.+.....       ++++.+++.+++.|++.+..+......+.+++| ++|+++.|+..++.++|..+.+.+
T Consensus        83 ~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l  155 (405)
T TIGR00891        83 SIVLFSAGTLACGFA-------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV  155 (405)
T ss_pred             HHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999888887765441       247788888999999988888888888999998 569999999999999999887776


Q ss_pred             HHHHh
Q 013969          161 YNMLL  165 (433)
Q Consensus       161 ~~~~~  165 (433)
                      ...+.
T Consensus       156 ~~~l~  160 (405)
T TIGR00891       156 YSLVV  160 (405)
T ss_pred             HHHHH
Confidence            66554

>PRK03699 putative transporter; Provisional

Probab=99.77  E-value=3.9e-17  Score=165.90  Aligned_cols=151  Identities=11%  Similarity=-0.007  Sum_probs=120.9

Q ss_pred             CCCChHhHHHHHHHHHHh-hhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHH
Q 013969            8 SRPPWVGLGAAVWVQIAA-GNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLA   85 (433)
Q Consensus         8 ~~~~w~~l~~~~l~~~~~-g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l   85 (433)
                      ..+||+....+.+..+.. ...+.++...|++++++|+|.++.+++.+...++..+ .++.|++.||+|+|+++.++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~   81 (394)
T PRK03699          2 NSNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFAL   81 (394)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            357787776776666554 4578899999999999999999999987777777754 89999999999999999999998


Q ss_pred             HHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969           86 CFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                      .+++..+....       ++++.+++.+++.|++.+..+......+.+++|+ +||++.++..+..++|+.+.+.+...+
T Consensus        82 ~~i~~~l~~~~-------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  154 (394)
T PRK03699         82 MILAVAGLMFS-------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL  154 (394)
T ss_pred             HHHHHHHHHHc-------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88887755441       2467777788888888887777777888999985 599999998888888887777665554


Q ss_pred             h
Q 013969          165 L  165 (433)
Q Consensus       165 ~  165 (433)
                      +
T Consensus       155 ~  155 (394)
T PRK03699        155 L  155 (394)
T ss_pred             H
Confidence            3

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.76  E-value=2.8e-17  Score=165.97  Aligned_cols=131  Identities=12%  Similarity=0.024  Sum_probs=100.0

Q ss_pred             hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           27 NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        27 ~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      ..+.++...|++++++|+|.+|.+++.+...++.. .+++.|++.||+|||+++..+.+....+.. ...  .    .++
T Consensus         6 ~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~--~----~~~   78 (368)
T TIGR00903         6 IWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLL--D----PFN   78 (368)
T ss_pred             HHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHH--H----hcc
Confidence            45677888999999999999999998887778775 589999999999988876544443333322 111  1    124


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      ++.+.+.+++.|+|.+. +.+......+||| ++|++++++...+.++|.++.+++...+.
T Consensus        79 ~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~  138 (368)
T TIGR00903        79 YEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY  138 (368)
T ss_pred             HHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888899999999885 4556666789998 56999999999999999988866655443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.76  E-value=1.1e-17  Score=166.56  Aligned_cols=130  Identities=16%  Similarity=0.162  Sum_probs=109.7

Q ss_pred             hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           27 NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        27 ~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      ....++...|.+++++|+|..+.+++.+...++.. ..++.|++.||+|+|+++.++.++.+++.+++...       ++
T Consensus        10 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~   82 (379)
T TIGR00881        10 VRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-------TS   82 (379)
T ss_pred             hHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-------hh
Confidence            35677778889999999999999998888878875 48999999999999999999999999888866552       24


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHH
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNM  163 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~  163 (433)
                      ++.+++.+++.|++.+..+......+.+++|+ +|+++.|+...+.++|..+.+++...
T Consensus        83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  141 (379)
T TIGR00881        83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLF  141 (379)
T ss_pred             HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHH
Confidence            67777888889998888888888899999995 69999999999988999888754443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.76  E-value=5e-17  Score=162.23  Aligned_cols=127  Identities=19%  Similarity=0.194  Sum_probs=101.6

Q ss_pred             hhhhhhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccC
Q 013969           25 AGNAYNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVE  102 (433)
Q Consensus        25 ~g~~y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~  102 (433)
                      ....+.++.+.|. +++++|+|..+.+++.+...++.. ..++.|++.||+|+|+++.++.++..++.+.+...      
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~------   87 (366)
T TIGR00886        14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA------   87 (366)
T ss_pred             HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH------
Confidence            3456778888885 899999999999998888888875 59999999999999999999999999988766542      


Q ss_pred             ch-hHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHH
Q 013969          103 SL-PYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTE  159 (433)
Q Consensus       103 ~~-~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~  159 (433)
                       + +++.+++.+++.|++.+ .+.+....+.+|+| ++|+++.++......+|..+.+.
T Consensus        88 -~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  144 (366)
T TIGR00886        88 -VQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQF  144 (366)
T ss_pred             -hhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHH
Confidence             2 46777777888888755 35567788999998 56999999987665566655433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.76  E-value=8.4e-17  Score=163.77  Aligned_cols=152  Identities=11%  Similarity=0.034  Sum_probs=120.4

Q ss_pred             CCCCChHhHHHHHHHHHHh-hhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHH
Q 013969            7 GSRPPWVGLGAAVWVQIAA-GNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSL   84 (433)
Q Consensus         7 ~~~~~w~~l~~~~l~~~~~-g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~   84 (433)
                      ..++.|..+.......... ...|....+.|++.+++|+|+++.++..+...++.. ..++.|++.||+|||+++.++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~   93 (394)
T PRK10213         14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAV   93 (394)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHH
Confidence            3455777655555543333 345665557889999999999999997766666664 58999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHH
Q 013969           85 ACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNM  163 (433)
Q Consensus        85 l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~  163 (433)
                      +.+++.+.....       ++++.+++.+++.|++.+..+......+.+++| ++|+++.++..++.++|..+.+++...
T Consensus        94 ~~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~  166 (394)
T PRK10213         94 LLTLSCLLVSFA-------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSF  166 (394)
T ss_pred             HHHHHHHHHHHH-------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999887765441       247888889999999998887778888999998 569999999999999998888777765


Q ss_pred             Hh
Q 013969          164 LL  165 (433)
Q Consensus       164 ~~  165 (433)
                      +.
T Consensus       167 l~  168 (394)
T PRK10213        167 LG  168 (394)
T ss_pred             HH
Confidence            54

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.76  E-value=2e-17  Score=164.25  Aligned_cols=272  Identities=19%  Similarity=0.181  Sum_probs=182.4

Q ss_pred             CCCChHhHHHHHHHH-HHhhhhhhhhccHHHHHHHhCCCHHHHHHHHHH-HHHHhhccccccccccccCchHHHHHHHHH
Q 013969            8 SRPPWVGLGAAVWVQ-IAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVA-NDIGENVGLLPGLASNKFPPWLVLFIGSLA   85 (433)
Q Consensus         8 ~~~~w~~l~~~~l~~-~~~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~-~~~~~~~~~~~G~l~Dr~G~r~~~~ig~~l   85 (433)
                      ++.+++.+..+++.. .+...-+.++...+.+++++|+|++|.+++... ...+...=++-|.+.||||+|++..++.++
T Consensus         9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l   88 (417)
T COG2223           9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL   88 (417)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence            345667777777755 344557888999999999999999999996544 444556678899999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969           86 CFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                      ..+-.+.+..+.+.    +++|++.+++++.|++.+ .+...+..+++|||+ ++|+|+||.-.| ++|.++...+.-.+
T Consensus        89 ~~IP~~~~~~a~~~----~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g~G-N~G~av~q~~~P~v  162 (417)
T COG2223          89 LLIPCLGLAFAVTY----PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAGAG-NLGVAVAQLVAPLV  162 (417)
T ss_pred             HHHHHHHHHHHccC----CchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhccc-cccHHHHHHHHHHH
Confidence            88877766664433    347888888888887654 355678889999995 599999998755 47776653222211


Q ss_pred             hcCChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHH
Q 013969          165 LHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLF  244 (433)
Q Consensus       165 ~~~~~~~~l~~~a~~~~~v~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  244 (433)
                      ...                  ..                .. .|+..      ..+|+....                  
T Consensus       163 ~~~------------------~g----------------~~-~w~~~------~~i~~~~l~------------------  183 (417)
T COG2223         163 AVA------------------FG----------------FL-AWRNV------AGIYVVALA------------------  183 (417)
T ss_pred             HHH------------------Hh----------------hH-HHHHH------HHHHHHHHH------------------
Confidence            100                  00                00 01110      001111100                  


Q ss_pred             HHHHHHHhhhhhhhhhhhhccccCcccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHhh
Q 013969          245 IMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAE  324 (433)
Q Consensus       245 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (433)
                           +.... ..+-.   +    +                        .|                 +..         
T Consensus       184 -----v~~v~-~~~~~---~----d------------------------~p-----------------~~r---------  200 (417)
T COG2223         184 -----IAAVL-AWLGM---N----D------------------------VP-----------------EHR---------  200 (417)
T ss_pred             -----HHHHH-HHHHh---C----C------------------------Ch-----------------hhh---------
Confidence                 00000 00000   0    0                        00                 000         


Q ss_pred             cccccccccCCCCCCCCCcHHHHhhhhhHHHHHHHHHhhcccceeeecchhhHHHhh-cCCcc--chhHHHHHHhHHHHh
Q 013969          325 GEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQ-GVHDT--TILLSLFSFCNFVGR  401 (433)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g~~~i~n~~~i~~s~-G~~~~--~~~vsl~si~n~~GR  401 (433)
                        .+   .+  +.  .+...+...++++-|.+.+.++...|.-..+.+-+..+.++. |.++.  .....++...+.+-|
T Consensus       201 --~~---~~--~~--~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~R  271 (417)
T COG2223         201 --AS---VK--PQ--LPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALAR  271 (417)
T ss_pred             --cc---cc--cc--chhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHH
Confidence              00   00  10  112345677899999999999999999999999999998887 77665  379999999999999


Q ss_pred             hhcccchHHHHHhhh
Q 013969          402 LGGGVVSEHFVRLVQ  416 (433)
Q Consensus       402 l~~G~lsD~~~~~~~  416 (433)
                      .++|++|||++.++.
T Consensus       272 p~GG~LsDR~Gg~rv  286 (417)
T COG2223         272 PLGGWLSDRIGGRRV  286 (417)
T ss_pred             hccchhhhhccchhH
Confidence            999999999998876

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.75  E-value=8.6e-17  Score=165.80  Aligned_cols=178  Identities=16%  Similarity=0.103  Sum_probs=121.7

Q ss_pred             ChHhHHHHHHHHHHh-hhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHH
Q 013969           11 PWVGLGAAVWVQIAA-GNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFF   88 (433)
Q Consensus        11 ~w~~l~~~~l~~~~~-g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~   88 (433)
                      +|..+...++..... ...+.+....|.+++ +|+|+++.+++.+...++.. ..++.|++.||+|+|+++.++.++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence            454444444433332 224445656677775 59999999998877777775 589999999999999999999998888


Q ss_pred             HHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhc-
Q 013969           89 GYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLH-  166 (433)
Q Consensus        89 g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~-  166 (433)
                      +.+.+... ...  ..+++.+++.+++.|++.+..+.+....+.+||| ++||+++|+..++.++|+.+.+++...... 
T Consensus       104 ~~~~~~~~-~~~--~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~  180 (438)
T TIGR00712       104 VMLLMGFV-PWA--TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW  180 (438)
T ss_pred             HHHHHhcc-ccc--cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            87765432 111  1235666667778888888777777888899998 569999999998888998888877665442 


Q ss_pred             -CChhHHHHHHHHHHHHHHHHHHhhcc
Q 013969          167 -NSSSKLLLVLAVGVPAVCLVMMYFVR  192 (433)
Q Consensus       167 -~~~~~~l~~~a~~~~~v~l~~~~~~r  192 (433)
                       .+|+..+.+.+++.++..++..+++|
T Consensus       181 ~~~w~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       181 FNDWHAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence             23444444444444433333334343

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.74  E-value=1.6e-16  Score=159.41  Aligned_cols=131  Identities=16%  Similarity=0.013  Sum_probs=107.9

Q ss_pred             hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhH
Q 013969           28 AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPY  106 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~  106 (433)
                      ...+....|.+++++|+|.++++++.+...++.. ..++.|++.||+|+|+++.++.++.+++.+.+...       +++
T Consensus        21 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~   93 (385)
T TIGR00710        21 IDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-------NNI   93 (385)
T ss_pred             HHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------ccH
Confidence            4445556788999999999999998888878775 48999999999999999999999988888765542       246


Q ss_pred             HHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          107 WLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       107 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      +.+++.+++.|++.+..+.+....+.+++|+ +|+++.|+.....++|..+.+.+...+.
T Consensus        94 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  153 (385)
T TIGR00710        94 ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL  153 (385)
T ss_pred             HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777788899999888888888889999985 5999999999988899887766665443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.74  E-value=7.4e-16  Score=161.53  Aligned_cols=178  Identities=17%  Similarity=0.099  Sum_probs=134.3

Q ss_pred             CChHhHHHHHHHHHHhh-hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHH
Q 013969           10 PPWVGLGAAVWVQIAAG-NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACF   87 (433)
Q Consensus        10 ~~w~~l~~~~l~~~~~g-~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~   87 (433)
                      ++|..++...+..+... ...+.++..|++.+++|.+.++.+++.+...++.. +.++.|++.||+|+|+++.++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~   82 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG   82 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            45666555555444433 35667778899999999999999998888878875 58999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcc-c-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969           88 FGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNF-P-LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus        88 ~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~F-p-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      ++.+.....       ++++.+++.+++.|+|.+..+......+.++| | ++|+++.|+.....++|.++.+.+...+.
T Consensus        83 ~~~~~~~~a-------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~  155 (495)
T PRK14995         83 LASLAAAFS-------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL  155 (495)
T ss_pred             HHHHHHHHc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            988865542       34788888899999998887766677788888 4 56999999999999999988888777776


Q ss_pred             cC-ChhHHHHHHHHHHHHHHHHHHhhcccC
Q 013969          166 HN-SSSKLLLVLAVGVPAVCLVMMYFVRPC  194 (433)
Q Consensus       166 ~~-~~~~~l~~~a~~~~~v~l~~~~~~r~~  194 (433)
                      +. +|++.+.+...+.++..++..+++++.
T Consensus       156 ~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~  185 (495)
T PRK14995        156 EHFYWGSVFLINVPIVLVVMGLTARYVPRQ  185 (495)
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            64 455544444444444444444555543

>TIGR00895 2A0115 benzoate transport

Probab=99.74  E-value=5.4e-17  Score=162.80  Aligned_cols=181  Identities=20%  Similarity=0.104  Sum_probs=135.9

Q ss_pred             CCCCChHhHHHHHHHHHHhhh-hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHH
Q 013969            7 GSRPPWVGLGAAVWVQIAAGN-AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSL   84 (433)
Q Consensus         7 ~~~~~w~~l~~~~l~~~~~g~-~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~   84 (433)
                      ..+++|..++.+.+..+..+. .+.++.+.|.+.+++|++..+.+++.+...++.. ..++.|++.||+|+|+++.++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~   90 (398)
T TIGR00895        11 LSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSIL   90 (398)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Confidence            344566666666665555443 5677788899999999999999998777777775 48999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHH
Q 013969           85 ACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNM  163 (433)
Q Consensus        85 l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~  163 (433)
                      +.+++.+++...       ++++.+++.+++.|++.+..+......+.+++| ++|+++.|+...+..+|..+.+.+...
T Consensus        91 ~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  163 (398)
T TIGR00895        91 LFSVFTLLCALA-------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGW  163 (398)
T ss_pred             HHHHHHHHHHHc-------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHH
Confidence            888887765441       246777778888999988888888899999999 569999999999988999888777766


Q ss_pred             HhcC-ChhHHHHHHHHHHHHHHHHHHhhcccC
Q 013969          164 LLHN-SSSKLLLVLAVGVPAVCLVMMYFVRPC  194 (433)
Q Consensus       164 ~~~~-~~~~~l~~~a~~~~~v~l~~~~~~r~~  194 (433)
                      +.+. +|+..+.+.++++.+..++...++++.
T Consensus       164 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (398)
T TIGR00895       164 LIPVFGWRSLFYVGGIAPLLLLLLLMRFLPES  195 (398)
T ss_pred             HhhcccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence            6653 444444444445555555555555443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.74  E-value=1.8e-16  Score=160.43  Aligned_cols=130  Identities=12%  Similarity=0.038  Sum_probs=107.8

Q ss_pred             hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhH
Q 013969           28 AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPY  106 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~  106 (433)
                      .+......|.+++++|+|.++.+++.+...++..+ .++.|++.||+|+|+++.++.++.+++.++....       +++
T Consensus        19 ~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~-------~~~   91 (382)
T PRK10091         19 EFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS-------SSY   91 (382)
T ss_pred             HHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh-------CcH
Confidence            45666688899999999999999988888888754 9999999999999999999999999988765442       347


Q ss_pred             HHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969          107 WLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus       107 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                      +.+++.+++.|++.+.........+.+++|+ +|+++.|+...+..+|..+.+++...+
T Consensus        92 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l  150 (382)
T PRK10091         92 LMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYL  150 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence            8888889999998887666666778899985 699999998888888888877765544

>TIGR00896 CynX cyanate transporter

Probab=99.73  E-value=1.1e-16  Score=159.86  Aligned_cols=129  Identities=16%  Similarity=0.050  Sum_probs=105.1

Q ss_pred             hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhH
Q 013969           28 AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPY  106 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~  106 (433)
                      ..+++.+.|++++++|+|.++.+++.+...++.. ..++.|++.||+|+|+++.++.++..++.... .       .+++
T Consensus        16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~-------~~~~   87 (355)
T TIGR00896        16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S-------APGT   87 (355)
T ss_pred             cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H-------hccH
Confidence            4567889999999999999999998888888875 59999999999999999999998887776643 1       1235


Q ss_pred             HHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969          107 WLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus       107 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                      +.+.+.+++.|+|.+.........+.++||++|+++.|+...+.++|..+.+.+...+
T Consensus        88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l  145 (355)
T TIGR00896        88 ALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPL  145 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666778888888887666666778899999999999999888888887776655443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00897 2A0118 polyol permease family

Probab=99.71  E-value=5.8e-16  Score=157.78  Aligned_cols=125  Identities=15%  Similarity=0.166  Sum_probs=94.8

Q ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHH
Q 013969           34 YSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIA  112 (433)
Q Consensus        34 ~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~  112 (433)
                      +.+++.+++|+|.++++++.+...++.. ..++.|++.||+|+|+++..+.++.+++...+... .. . ..+++.+++.
T Consensus        35 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-~~-~-~~~~~~l~~~  111 (402)
T TIGR00897        35 WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVF-GL-G-HANYPLILLF  111 (402)
T ss_pred             hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH-hc-c-CccHHHHHHH
Confidence            4566668899999999998887777775 59999999999999999999999988876544221 11 0 1246667777


Q ss_pred             HHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHH
Q 013969          113 LCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIY  161 (433)
Q Consensus       113 ~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~  161 (433)
                      +++.|+|.+....+....+.+++| ++||+++|+..++.++|..+.+++.
T Consensus       112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~  161 (402)
T TIGR00897       112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYY  161 (402)
T ss_pred             HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888887665555666778876 6799999999998888865444443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.71  E-value=1.2e-15  Score=156.18  Aligned_cols=138  Identities=14%  Similarity=0.127  Sum_probs=112.8

Q ss_pred             Hhhhhh-hhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhccc
Q 013969           24 AAGNAY-NFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTV  101 (433)
Q Consensus        24 ~~g~~y-~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~  101 (433)
                      ..|..+ ..+.+.|.+++++|+|..|.+++.+...++.. .+++.|++.||+|+|+++.+|.++++++...+.....   
T Consensus        14 ~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~---   90 (410)
T TIGR00885        14 LWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE---   90 (410)
T ss_pred             HHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh---
Confidence            345443 34578899999999999999998888888875 4899999999999999999999999999876543211   


Q ss_pred             CchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          102 ESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       102 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                       ..+++.+.+.+++.|+|.+...++....+.++.| ++|++..++..+.+++|+.+.+.+...++
T Consensus        91 -~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        91 -IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             -hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1247777778889999999988888888888888 45999999999999999988877776654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.70  E-value=2e-15  Score=156.80  Aligned_cols=159  Identities=14%  Similarity=0.082  Sum_probs=123.3

Q ss_pred             hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhH
Q 013969           28 AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPY  106 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~  106 (433)
                      ....+...|.+.+++|.|..+.+++.+...++.. ..++.|++.||+|+|+++.++.++..++.+....       .+++
T Consensus        18 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-------~~~~   90 (485)
T TIGR00711        18 STIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV-------APNL   90 (485)
T ss_pred             HHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC-------cCCH
Confidence            4456677888999999999999998888878875 4899999999999999999999999988875543       1347


Q ss_pred             HHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHH
Q 013969          107 WLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVC  184 (433)
Q Consensus       107 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~  184 (433)
                      +.+.+.+++.|++.+.........+.+++| ++||++.|+...+..+|..+.+.+...+.+. +|++.+.+.+.+.++..
T Consensus        91 ~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~  170 (485)
T TIGR00711        91 ELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVV  170 (485)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHH
Confidence            778888899999988888788889999998 5699999999999889998887776666653 45544444444444444


Q ss_pred             HHHHhhccc
Q 013969          185 LVMMYFVRP  193 (433)
Q Consensus       185 l~~~~~~r~  193 (433)
                      ++..+++++
T Consensus       171 ~~~~~~~~~  179 (485)
T TIGR00711       171 VVAFFILPR  179 (485)
T ss_pred             HHHHHHcCC
Confidence            444444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.70  E-value=1.8e-15  Score=153.22  Aligned_cols=129  Identities=12%  Similarity=0.010  Sum_probs=103.7

Q ss_pred             hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           27 NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        27 ~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      ..+.+....|.+++++|.|..+.++..+...++.. ..++.|++.||+|+|+.+.++.++..+++..+...       ++
T Consensus        18 ~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~-------~~   90 (392)
T PRK10473         18 GIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA-------ET   90 (392)
T ss_pred             HHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-------Cc
Confidence            34555578899999999999999998777777775 48999999999999999999999988888765431       23


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHH
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYN  162 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~  162 (433)
                      ++.+++.+++.|++.+..+......+.+++| ++|+++.|+......++..+.+.+..
T Consensus        91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~  148 (392)
T PRK10473         91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGH  148 (392)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666677788888888777778888999998 56999999988877777766554443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.68  E-value=2.9e-15  Score=154.21  Aligned_cols=147  Identities=14%  Similarity=-0.064  Sum_probs=101.4

Q ss_pred             CCChHhHHHHHHHHHHhh-hhhhhhccHHHHHHHhC---CCHHHHHH---HHHHHHHHhh-ccccccccccccCchHHHH
Q 013969            9 RPPWVGLGAAVWVQIAAG-NAYNFPLYSHSLKSVLG---FNQHQLTM---LGVANDIGEN-VGLLPGLASNKFPPWLVLF   80 (433)
Q Consensus         9 ~~~w~~l~~~~l~~~~~g-~~y~~s~~~~~l~~~~g---~s~~~~~~---i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~   80 (433)
                      .++|..++.+.+..+... ..+.+++..|.+.++++   ++..+.+.   +.....++.. .+++.|++.||+|||+++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~   97 (432)
T PRK10406         18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML   97 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            345555555544443333 35678888899999984   56665433   2333334443 4889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccc--CchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHH
Q 013969           81 IGSLACFFGYGVLWLAVSRTV--ESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAV  156 (433)
Q Consensus        81 ig~~l~~~g~~~~~~~~~~~~--~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i  156 (433)
                      ++.++++++.+..++. .+..  ...++..+.+++++.|+|.|..+....+.+.+|+| ++||++.++...+...|..+
T Consensus        98 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~  175 (432)
T PRK10406         98 ISVCMMCFGSLVIACL-PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL  175 (432)
T ss_pred             HHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Confidence            9999999988865542 1110  00113456679999999999888888999999998 56999988876665455443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.67  E-value=2.3e-15  Score=153.29  Aligned_cols=150  Identities=11%  Similarity=-0.008  Sum_probs=107.9

Q ss_pred             CCCChHhHHHHHHHHHHhh-hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHH
Q 013969            8 SRPPWVGLGAAVWVQIAAG-NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLA   85 (433)
Q Consensus         8 ~~~~w~~l~~~~l~~~~~g-~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l   85 (433)
                      .++.|...+...+..+... ....+....|++++++|+|+.++++..+...++.. ..++.|++.||+|+|+++.++.++
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   87 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF   87 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            3344444444433333222 23344445677899999999999997777777775 489999999999999999999988


Q ss_pred             HHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969           86 CFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                      .+++.+.....       ++++.+++.+++.|++.+.........+.++||+ +|+++.++......+|..+.+++...+
T Consensus        88 ~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l  160 (406)
T PRK15402         88 FILTCLAILLA-------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAAL  160 (406)
T ss_pred             HHHHHHHHHHH-------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88887765442       2467777788888888877666677888999985 488888887777667766665555444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.67  E-value=1.1e-14  Score=145.82  Aligned_cols=266  Identities=17%  Similarity=0.147  Sum_probs=198.7

Q ss_pred             CCCCChHhHHHHHHHHHHhh-hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHH
Q 013969            7 GSRPPWVGLGAAVWVQIAAG-NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSL   84 (433)
Q Consensus         7 ~~~~~w~~l~~~~l~~~~~g-~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~   84 (433)
                      ..++.|..+..-.+..++.+ ..|...-..|++.+++|.|..+++...+...++.. .+|+...+.||+.||++++...+
T Consensus         7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~   86 (394)
T COG2814           7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLA   86 (394)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence            34445555555445555555 47888888999999999999999997776767764 59999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHH
Q 013969           85 ACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNM  163 (433)
Q Consensus        85 l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~  163 (433)
                      ++.++.++.++       +++|+.+.+.+++.|+..|..+........+.-| +||++|+|++.+|..++..+..|+...
T Consensus        87 lFi~~n~l~al-------Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~  159 (394)
T COG2814          87 LFIVSNLLSAL-------APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF  159 (394)
T ss_pred             HHHHHHHHHHH-------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH
Confidence            99999987665       2569999999999999999888888889999998 579999999999999999888888775


Q ss_pred             HhcCChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHH
Q 013969          164 LLHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASL  243 (433)
Q Consensus       164 ~~~~~~~~~l~~~a~~~~~v~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  243 (433)
                      +=                                      +-.+||..|..+..+++..+.                   
T Consensus       160 ig--------------------------------------~~~GWR~~F~~ia~l~ll~~~-------------------  182 (394)
T COG2814         160 LG--------------------------------------QLFGWRATFLAIAVLALLALL-------------------  182 (394)
T ss_pred             HH--------------------------------------HHhhHHHHHHHHHHHHHHHHH-------------------
Confidence            53                                      223455544432222210000                   


Q ss_pred             HHHHHHHHhhhhhhhhhhhhccccCcccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHh
Q 013969          244 FIMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLA  323 (433)
Q Consensus       244 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (433)
                             ..-..+| +        ++.                        +                 +++        
T Consensus       183 -------~~~~~lP-~--------~~~------------------------~-----------------~~~--------  197 (394)
T COG2814         183 -------LLWKLLP-P--------SEI------------------------S-----------------GSL--------  197 (394)
T ss_pred             -------HHHHhCC-C--------ccC------------------------C-----------------CCC--------
Confidence                   0000111 0        000                        0                 000        


Q ss_pred             hcccccccccCCCCCCCCCcHHHHhhhhhHHHHHHHHHhhcccceeeecchhhHHHhh-cCCcc--chhHHHHHHhHHHH
Q 013969          324 EGEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQ-GVHDT--TILLSLFSFCNFVG  400 (433)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g~~~i~n~~~i~~s~-G~~~~--~~~vsl~si~n~~G  400 (433)
                                  +  .+-.+..+.+|+|.-|..++..++..+..-+..+-+.|+.++. |.+..  +...-+++++..+|
T Consensus       198 ------------~--~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~G  263 (394)
T COG2814         198 ------------P--GPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIG  263 (394)
T ss_pred             ------------C--cchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHH
Confidence                        0  0012346899999999999999999999999999999999998 77665  57888999999999


Q ss_pred             hhhcccchHHHHHhhh
Q 013969          401 RLGGGVVSEHFVRLVQ  416 (433)
Q Consensus       401 Rl~~G~lsD~~~~~~~  416 (433)
                      -++.|.++|| +.++.
T Consensus       264 n~~gGrl~dr-~~~~~  278 (394)
T COG2814         264 NLLGGRLADR-GPRRA  278 (394)
T ss_pred             HHHHhhhccc-cchhH
Confidence            9999999999 55544

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.66  E-value=4.2e-15  Score=149.23  Aligned_cols=131  Identities=15%  Similarity=0.013  Sum_probs=105.7

Q ss_pred             hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhH
Q 013969           28 AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPY  106 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~  106 (433)
                      ...+....|.+.+++|+|.++++++.+...++.. ..++.|++.||+|||+++.++.++.+++...+...       +++
T Consensus         7 ~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-------~~~   79 (377)
T PRK11102          7 IDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-------QTI   79 (377)
T ss_pred             HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-------ccH
Confidence            3445567788889999999999998887777775 48999999999999999999999998888766542       236


Q ss_pred             HHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          107 WLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       107 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      +.+++.+++.|++.+.........+.+++|+ +|+++.|+...+.++|..+.+.+...+.
T Consensus        80 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  139 (377)
T PRK11102         80 DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL  139 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777778888888887777777889999984 5999999998888888877766655443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.66  E-value=2.3e-14  Score=149.49  Aligned_cols=168  Identities=20%  Similarity=0.217  Sum_probs=127.6

Q ss_pred             CCChHhHHHHHHHHHHhh-hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHH
Q 013969            9 RPPWVGLGAAVWVQIAAG-NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLAC   86 (433)
Q Consensus         9 ~~~w~~l~~~~l~~~~~g-~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~   86 (433)
                      +++|..+....+..+..+ ..+..+.+.|.+++++|+|+.+.+++.+...++.. ..++.|++.||+|+|+++.++.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   95 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF   95 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            455665555555444444 34566777889999999999999997777777775 4899999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969           87 FFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      +++.+.+.+.       .+++.+++.+++.|++.+..+......+.++|| ++|+++.|+...+.++|..+.+.+...+.
T Consensus        96 ~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  168 (496)
T PRK03893         96 SVGTLACGFA-------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV  168 (496)
T ss_pred             HHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888766542       247777788889999888888888888999998 55999999999999999988888777766


Q ss_pred             cCChhHHHHHHHHHHHHH
Q 013969          166 HNSSSKLLLVLAVGVPAV  183 (433)
Q Consensus       166 ~~~~~~~l~~~a~~~~~v  183 (433)
                      +...++..+.++.++.++
T Consensus       169 ~~~~w~~~f~~~~~~~~~  186 (496)
T PRK03893        169 PVWGWRALFFIGILPIIF  186 (496)
T ss_pred             ccCCHHHHHHHHHHHHHH
Confidence            643333333444444433

>PRK11043 putative transporter; Provisional

Probab=99.66  E-value=8e-15  Score=148.91  Aligned_cols=147  Identities=14%  Similarity=-0.036  Sum_probs=107.3

Q ss_pred             hHhHHHHHHHHHHhhhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHH
Q 013969           12 WVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGY   90 (433)
Q Consensus        12 w~~l~~~~l~~~~~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~   90 (433)
                      |..+..+++..+.....+.+....|++++++|+|.++++++.+...++.. ..++.|++.||+|+|+++.++.++..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   85 (401)
T PRK11043          6 GFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGS   85 (401)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHH
Confidence            34444444433333334444445567799999999999998888888875 58999999999999999999998888877


Q ss_pred             HHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969           91 GVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      +.....       ++++.+++.+++.|++.+.........+.++||+ +|+.+.+......+++.++.+.+...+.
T Consensus        86 ~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  154 (401)
T PRK11043         86 LGMLWV-------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL  154 (401)
T ss_pred             HHHHHh-------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            755431       2467777778888887766655556778899985 4788888877777788877766655443

>PRK10504 putative transporter; Provisional

Probab=99.66  E-value=3.6e-14  Score=147.31  Aligned_cols=148  Identities=13%  Similarity=0.016  Sum_probs=114.5

Q ss_pred             hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           27 NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        27 ~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      ..+.++...|.+.+++|+|..+.+++.+...++.. ..++.|++.||+|+|+++..+.++.+++.+.....       ++
T Consensus        25 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~   97 (471)
T PRK10504         25 DTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS-------GT   97 (471)
T ss_pred             hHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-------CC
Confidence            35566678888999999999999997777777764 58999999999999999999988888877754331       24


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVP  181 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~  181 (433)
                      ++.+++.+++.|+|.+..+......+.+++|+ +|+++.|+.....++|..+.+++...+.+. +|++.+.+...+..
T Consensus        98 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~  175 (471)
T PRK10504         98 LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGI  175 (471)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHH
Confidence            67777788899999887777777888999995 599999999888889988887777766653 44444444333333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.66  E-value=1.1e-15  Score=150.91  Aligned_cols=131  Identities=25%  Similarity=0.270  Sum_probs=106.4

Q ss_pred             hhhhhccHH-HHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           28 AYNFPLYSH-SLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        28 ~y~~s~~~~-~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      ...+....| .+++++|+|..+++++.+...++.. ..++.|++.||+|+|+++.++.++.+++.+...+  ..     +
T Consensus        12 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~--~~-----~   84 (352)
T PF07690_consen   12 FSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF--AS-----N   84 (352)
T ss_dssp             HHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--HC-----C
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh--hh-----h
Confidence            334555566 6889999999999998888777775 5999999999999999999999999998444332  11     3


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      ++.+++.+++.|++.+..+......+.+++|+ +|+++.|+...+.++|..+.+.+...+.
T Consensus        85 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  145 (352)
T PF07690_consen   85 FWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI  145 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh
Confidence            56677789999999988888889999999996 7999999999999999988766666554

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.65  E-value=7.6e-15  Score=150.43  Aligned_cols=182  Identities=14%  Similarity=0.057  Sum_probs=123.8

Q ss_pred             CCCChHhHHHHHHHHHH---hh-hhhhhhccHHHHHHHhCCC--------HHHHHHHHHHHHHHhh-ccccccccccccC
Q 013969            8 SRPPWVGLGAAVWVQIA---AG-NAYNFPLYSHSLKSVLGFN--------QHQLTMLGVANDIGEN-VGLLPGLASNKFP   74 (433)
Q Consensus         8 ~~~~w~~l~~~~l~~~~---~g-~~y~~s~~~~~l~~~~g~s--------~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G   74 (433)
                      ..++|.......++.+.   .+ .....+...+.++.+++.+        ..+.+++.+...++.. ..++.|++.||+|
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g   99 (481)
T TIGR00879        20 GSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFG   99 (481)
T ss_pred             CcccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhh
Confidence            34456555444443322   11 1233445556667777766        8899998888878875 5999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhH
Q 013969           75 PWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLS  153 (433)
Q Consensus        75 ~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg  153 (433)
                      ||+++.++.++..++..+.... ..   ..+++.+++.+++.|+|.+..+......+.+++| ++|+++.++...+.++|
T Consensus       100 rr~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G  175 (481)
T TIGR00879       100 RKKSLLIIALLFVIGAILMGLA-AF---ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFG  175 (481)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHh-cc---ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHH
Confidence            9999999999998887765432 11   1235677778999999998888888889999998 56999999999998899


Q ss_pred             HHHHHHHH---HHHhcCChhHHHHHHHHHHHHHHHHHHhhccc
Q 013969          154 AAVFTEIY---NMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRP  193 (433)
Q Consensus       154 ~~i~~~l~---~~~~~~~~~~~l~~~a~~~~~v~l~~~~~~r~  193 (433)
                      ..+.+.+.   ........+++.+.+..+..++.++..+++++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~  218 (481)
T TIGR00879       176 ILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPE  218 (481)
T ss_pred             HHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            88877766   21112222333333344444444444455544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.65  E-value=6.4e-15  Score=145.99  Aligned_cols=130  Identities=12%  Similarity=0.038  Sum_probs=103.4

Q ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHH
Q 013969           34 YSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIA  112 (433)
Q Consensus        34 ~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~  112 (433)
                      ..|.+..+++.+..+++++.+...++.. ..++.|++.||+|||+++.++.++.+++..........  ...+++.+++.
T Consensus        21 ~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   98 (365)
T TIGR00900        21 ALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL--GGLNIWQVYVL   98 (365)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc--CCCcHHHHHHH
Confidence            3344667789999999998888888875 59999999999999999999999888877665543211  11257788888


Q ss_pred             HHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          113 LCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       113 ~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      +++.|++.+....+....+.+++| ++|+++.|+...+.++|..+.+.+...+.
T Consensus        99 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  152 (365)
T TIGR00900        99 AGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY  152 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            888898888887777888999998 56999999999999999987776665544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.65  E-value=6.6e-15  Score=154.14  Aligned_cols=140  Identities=15%  Similarity=-0.012  Sum_probs=101.0

Q ss_pred             hHhHHHHHHHHHHhh-hhhhhhccHHHHHHHhCCCHHH----HHHH--HHHHHHHhh-ccccccccccccCchHHHHHHH
Q 013969           12 WVGLGAAVWVQIAAG-NAYNFPLYSHSLKSVLGFNQHQ----LTML--GVANDIGEN-VGLLPGLASNKFPPWLVLFIGS   83 (433)
Q Consensus        12 w~~l~~~~l~~~~~g-~~y~~s~~~~~l~~~~g~s~~~----~~~i--~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~   83 (433)
                      |..++.+.+..+..+ -.+.++...|.+.++++.+.++    ++.+  .+...++.. .+++.|++.||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            444445545444443 3556777788888888643322    2222  244445554 4899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCchhHH--------HHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHH
Q 013969           84 LACFFGYGVLWLAVSRTVESLPYW--------LLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSA  154 (433)
Q Consensus        84 ~l~~~g~~~~~~~~~~~~~~~~~~--------~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~  154 (433)
                      ++++++.++.++.       ++++        .+.+++++.|+|.|..+.+....+.+||| ++||++.++...+..+|.
T Consensus        95 ~l~~i~~~~~a~~-------~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~  167 (490)
T PRK10642         95 VIMSISTFCIGLI-------PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGF  167 (490)
T ss_pred             HHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence            9999988876552       2233        35668999999999999999999999998 569999999887766666


Q ss_pred             HHHH
Q 013969          155 AVFT  158 (433)
Q Consensus       155 ~i~~  158 (433)
                      .+.+
T Consensus       168 ~lg~  171 (490)
T PRK10642        168 VLGA  171 (490)
T ss_pred             HHHH
Confidence            5544

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.64  E-value=2.3e-14  Score=150.49  Aligned_cols=185  Identities=10%  Similarity=-0.038  Sum_probs=124.5

Q ss_pred             ChHhHHHHHHHHHHhhh-hhhhhccHHHHHHHh-----CCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHH
Q 013969           11 PWVGLGAAVWVQIAAGN-AYNFPLYSHSLKSVL-----GFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGS   83 (433)
Q Consensus        11 ~w~~l~~~~l~~~~~g~-~y~~s~~~~~l~~~~-----g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~   83 (433)
                      ++.++..+.+..+..+. ....+...|.+.+++     ..+..+.+++.+...++.. ..++.|++.||+|||+++.++.
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~   93 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL   93 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            33344333333344443 334455556666543     3455566777777778875 4899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHH
Q 013969           84 LACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYN  162 (433)
Q Consensus        84 ~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~  162 (433)
                      ++..++.++..... +..+..+++.+++.+++.|++.|..+......+.+++| ++||+++++......+|..+.+.+..
T Consensus        94 ~~~~v~~~~~~~~~-~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~  172 (502)
T TIGR00887        94 IIMIIATVASGLSP-GSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL  172 (502)
T ss_pred             HHHHHHHHHHHHcc-CcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98888877655421 11011125677789999999999888888999999999 55999999998888888766655443


Q ss_pred             HHhc-----------------------CChhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 013969          163 MLLH-----------------------NSSSKLLLVLAVGVPAVCLVMMYFVRPCTP  196 (433)
Q Consensus       163 ~~~~-----------------------~~~~~~l~~~a~~~~~v~l~~~~~~r~~~~  196 (433)
                      .+..                       +..|+++++++.++.++.++..+++++.|+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr  229 (502)
T TIGR00887       173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPR  229 (502)
T ss_pred             HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            2211                       113555666666676666666666655544

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.64  E-value=1.3e-14  Score=146.75  Aligned_cols=130  Identities=15%  Similarity=0.026  Sum_probs=105.3

Q ss_pred             hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhH
Q 013969           28 AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPY  106 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~  106 (433)
                      ......+.|.+++++|+|.++++++.+...++.. ..++.|++.||+|+|+++.++.++.++++......       +++
T Consensus        22 ~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~-------~~~   94 (381)
T PRK03633         22 IAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM-------VGF   94 (381)
T ss_pred             hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccH
Confidence            4455667888999999999999998888888875 49999999999999999999999999888765431       247


Q ss_pred             HHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969          107 WLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus       107 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                      +.+.+.+++.|++.+.........+.++.| ++||++.|+...+..+|.++.+.+...+
T Consensus        95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  153 (381)
T PRK03633         95 WSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV  153 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            777788899999888766655566667776 6799999999888889988876665544

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.64  E-value=7.4e-15  Score=152.01  Aligned_cols=253  Identities=15%  Similarity=0.145  Sum_probs=190.8

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHH
Q 013969           39 KSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVAT  117 (433)
Q Consensus        39 ~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g  117 (433)
                      +.+++||++|-+++.+....|... .+++|+++||+|.|+++..+.++.+++.++.-.+...     +++.+++.+++.|
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~-----~~~~~~~~R~lqG  139 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI-----GFYLLLVLRFLQG  139 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh-----cchhhHHHHHHhH
Confidence            457999999999988888899865 8999999999999999999999999988877664322     3566777999999


Q ss_pred             hchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHHHHHHhhcccC
Q 013969          118 NSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLHN--SSSKLLLVLAVGVPAVCLVMMYFVRPC  194 (433)
Q Consensus       118 ~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~--~~~~~l~~~a~~~~~v~l~~~~~~r~~  194 (433)
                      ++.|..+++.-....+|+| ++|++..+++.++..+|.++..|+...+.+.  +|...+++.|+++++..++..++.+|.
T Consensus       140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~  219 (466)
T KOG2532|consen  140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDS  219 (466)
T ss_pred             HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999888899999999 5699999999999999999888888877754  566666677777777766666666665


Q ss_pred             CCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhhhhhhhhhhhhccccCcccccc
Q 013969          195 TPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRKRTSESGILD  274 (433)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  274 (433)
                      |.+...                                 .+..|.                                   
T Consensus       220 P~~h~~---------------------------------is~~El-----------------------------------  231 (466)
T KOG2532|consen  220 PSKHPN---------------------------------ISEKEL-----------------------------------  231 (466)
T ss_pred             cccCCC---------------------------------CCHHHH-----------------------------------
Confidence            442110                                 000000                                   


Q ss_pred             cCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHhhcccccccccCCCCCCCCCcHHHHhhhhhHH
Q 013969          275 QSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAVVKADFW  354 (433)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fw  354 (433)
                                                                  +.. +++...   ++  .+++++.+.+++++++.+|
T Consensus       232 --------------------------------------------~~I-~~~k~~---~~--~~~~~~vP~~~i~ts~~vw  261 (466)
T KOG2532|consen  232 --------------------------------------------KYI-EKGKSE---AH--VKKKPPVPYKAILTSPPVW  261 (466)
T ss_pred             --------------------------------------------HHH-Hhcccc---cc--cCCCCCCCHHHHHcCHHHH
Confidence                                                        000 000000   00  0001346789999999999


Q ss_pred             HHHHHHHhhcccceeeecchhhHHHh-hcCCcc--chhHHHHHHhHHHHhhhcccchHHHHHh
Q 013969          355 LLFLVYFAGVGSGVTVLNNLAQIGIA-QGVHDT--TILLSLFSFCNFVGRLGGGVVSEHFVRL  414 (433)
Q Consensus       355 ll~~~~~~~~g~g~~~i~n~~~i~~s-~G~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~  414 (433)
                      .+|++.++..-.-..++..+....++ ++++-.  ..+.++=-+.+.+-+++.|.++|++.+|
T Consensus       262 ai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~  324 (466)
T KOG2532|consen  262 AIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR  324 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999988877666666666666665 477643  5678888999999999999999999886

>TIGR00898 2A0119 cation transport protein

Probab=99.64  E-value=2.4e-15  Score=157.43  Aligned_cols=159  Identities=13%  Similarity=0.181  Sum_probs=120.6

Q ss_pred             hhhhhhccHHHHHHHhCCC---HHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccC
Q 013969           27 NAYNFPLYSHSLKSVLGFN---QHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVE  102 (433)
Q Consensus        27 ~~y~~s~~~~~l~~~~g~s---~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~  102 (433)
                      ..|.++.+.+.++++++++   +.+.++..+...++..+ .++.|++.||+|||+++.++.++.+++.++..+       
T Consensus       104 ~~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~-------  176 (505)
T TIGR00898       104 WEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF-------  176 (505)
T ss_pred             cEecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-------
Confidence            4566667888899999999   89999988888888865 899999999999999999999988888775543       


Q ss_pred             chhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 013969          103 SLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVP  181 (433)
Q Consensus       103 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~l~~~a~~~~  181 (433)
                      .++++.+++++++.|++.+..+......+.+++|+ +|+.+.++...++++|.++.+. ...++.+ |+..+...++ +.
T Consensus       177 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~-~~~~~~~-wr~~~~~~~i-~~  253 (505)
T TIGR00898       177 SPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPL-VAYFIPD-WRWLQLAVSL-PT  253 (505)
T ss_pred             cccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHH-HHHHhhH-HHHHHHHHHH-HH
Confidence            13578888889999999998888888999999985 5999999988888788765544 4444433 5544444444 44


Q ss_pred             HHHHHHHhhcccCC
Q 013969          182 AVCLVMMYFVRPCT  195 (433)
Q Consensus       182 ~v~l~~~~~~r~~~  195 (433)
                      ++.++..+++++.|
T Consensus       254 ~~~~~~~~~~~esp  267 (505)
T TIGR00898       254 FLFFLLSWFVPESP  267 (505)
T ss_pred             HHHHHHHHhcCCCh
Confidence            44444445555433

>PRK10133 L-fucose transporter; Provisional

Probab=99.63  E-value=2.4e-14  Score=147.97  Aligned_cols=133  Identities=14%  Similarity=0.123  Sum_probs=107.9

Q ss_pred             hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           27 NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        27 ~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      .....+.+.|.+++++|+|.++.++..+...++.. .+++.|++.||+|+|+++.++.++++++.+++.....    +++
T Consensus        41 ~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~----a~~  116 (438)
T PRK10133         41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE----IMN  116 (438)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh----cCC
Confidence            35667778899999999999999998888888875 4999999999999999999999999999876532111    235


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhcccCC-chhHHHHHHhhhhhHHHHHHHHHHH
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFPLS-RGTVAGILKGYGGLSAAVFTEIYNM  163 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~  163 (433)
                      ++.+++.+++.|+|.+....+....+.++.|++ |...+++..+.+++|..+.+.+...
T Consensus       117 ~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~  175 (438)
T PRK10133        117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888999999999988888888888887755 5567889888888888877655443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.63  E-value=4.2e-14  Score=143.45  Aligned_cols=134  Identities=14%  Similarity=0.084  Sum_probs=100.2

Q ss_pred             hccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHH
Q 013969           32 PLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAV-SRTVESLPYWLL  109 (433)
Q Consensus        32 s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~-~~~~~~~~~~~l  109 (433)
                      .++...+++++|+|..+++++.+...++.. .+++.|++.||+|||+++.++.++.+++........ .+.....+++.+
T Consensus        36 ~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  115 (399)
T PRK05122         36 AVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLL  115 (399)
T ss_pred             HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHH
Confidence            333334788999999999998888888875 599999999999999999999998877655443321 111111235567


Q ss_pred             HHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          110 WIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       110 ~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      ++.+++.|+|.+..+......+.+++| ++|+++.|+...+..+|..+.+++...+.
T Consensus       116 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~  172 (399)
T PRK05122        116 LLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY  172 (399)
T ss_pred             HHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence            778899999998877777777889987 66999999987777777766666655443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.62  E-value=3e-14  Score=146.69  Aligned_cols=146  Identities=8%  Similarity=-0.045  Sum_probs=105.5

Q ss_pred             CCCCChHhHHHHHHHHHHhh-hhhhhhccHHHHHHHhCCCHHHHHH-HHHHHHHHh------hccccccccccccCchHH
Q 013969            7 GSRPPWVGLGAAVWVQIAAG-NAYNFPLYSHSLKSVLGFNQHQLTM-LGVANDIGE------NVGLLPGLASNKFPPWLV   78 (433)
Q Consensus         7 ~~~~~w~~l~~~~l~~~~~g-~~y~~s~~~~~l~~~~g~s~~~~~~-i~~~~~~~~------~~~~~~G~l~Dr~G~r~~   78 (433)
                      .+..||+.....++..+... ....++.+.|.++++++.+..+.+. ..+...++.      ..+++.|++.||+|||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~   88 (434)
T PRK15075          9 SRESKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKG   88 (434)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHH
Confidence            34456665555555554444 3667889999999999998887654 333222221      236788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCchhHH--------HHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhh
Q 013969           79 LFIGSLACFFGYGVLWLAVSRTVESLPYW--------LLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGY  149 (433)
Q Consensus        79 ~~ig~~l~~~g~~~~~~~~~~~~~~~~~~--------~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~  149 (433)
                      ++++.++.+++..+..+.       ++++        .+++.+++.|++.+..+......+.+|+| ++||+++++...+
T Consensus        89 l~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~  161 (434)
T PRK15075         89 LIVTLSIMASGTLLIAFV-------PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSAS  161 (434)
T ss_pred             HHHHHHHHHHHHHHHHhC-------CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHH
Confidence            999999998888765542       1233        34568899999988877777888999998 5699999998887


Q ss_pred             hhhHHHHHHH
Q 013969          150 GGLSAAVFTE  159 (433)
Q Consensus       150 ~glg~~i~~~  159 (433)
                      ..+|..+.+.
T Consensus       162 ~~~g~~~g~~  171 (434)
T PRK15075        162 QQVAVVFAAL  171 (434)
T ss_pred             HHHHHHHHHH
Confidence            7777655443

>PRK12382 putative transporter; Provisional

Probab=99.60  E-value=8.5e-14  Score=140.96  Aligned_cols=128  Identities=15%  Similarity=0.024  Sum_probs=97.2

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHH
Q 013969           37 SLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAV-SRTVESLPYWLLWIALC  114 (433)
Q Consensus        37 ~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~-~~~~~~~~~~~l~~~~~  114 (433)
                      .+++++|+|.++++++.+...++.. .+++.|++.||+|+|+++.++.+...++...+.... .......+++.+++.++
T Consensus        41 ~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  120 (392)
T PRK12382         41 FVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRL  120 (392)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Confidence            4688999999999998888878875 599999999999999999999887776544322211 01001134677778899


Q ss_pred             HHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969          115 VATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus       115 l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                      +.|+|.+..+.+....+.+++| ++|++++|+...+..+|.++.+++...+
T Consensus       121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l  171 (392)
T PRK12382        121 ILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLL  171 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999988777777778889998 6699999998887777777766655443

>PRK10054 putative transporter; Provisional

Probab=99.60  E-value=2e-14  Score=146.32  Aligned_cols=131  Identities=11%  Similarity=0.042  Sum_probs=96.4

Q ss_pred             hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhH
Q 013969           28 AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPY  106 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~  106 (433)
                      ...++.+.+.+++++|+|..+++++.+...+... ..++.|++.||+|+|+++.++.++.+++++.+.+.       +++
T Consensus        24 ~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-------~~~   96 (395)
T PRK10054         24 GATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV-------NNV   96 (395)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH-------hHH
Confidence            3344445556788999999999998777666664 58999999999999999999999888887765442       235


Q ss_pred             HHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          107 WLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       107 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      +.+++..++.|.+.+...........+.+| ++|+++.|+.....++|.++.+++...+.
T Consensus        97 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054         97 TLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555545444444555677777 56999999999988899888876665443

>PRK09952 shikimate transporter; Provisional

Probab=99.60  E-value=5e-14  Score=145.44  Aligned_cols=146  Identities=7%  Similarity=-0.036  Sum_probs=103.1

Q ss_pred             CCChHhHHHHHHHHHHhhh-hhhhhccHHH-HHHHh--CCCHHHHHHHHH-----HHHHHhhc-cccccccccccCchHH
Q 013969            9 RPPWVGLGAAVWVQIAAGN-AYNFPLYSHS-LKSVL--GFNQHQLTMLGV-----ANDIGENV-GLLPGLASNKFPPWLV   78 (433)
Q Consensus         9 ~~~w~~l~~~~l~~~~~g~-~y~~s~~~~~-l~~~~--g~s~~~~~~i~~-----~~~~~~~~-~~~~G~l~Dr~G~r~~   78 (433)
                      .++|..+..+++.....+. ...++.+.|. +.+++  +.++.+ +++.+     ...++..+ +++.|++.||+|||++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~   96 (438)
T PRK09952         18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence            3456666566555544433 5566666665 45565  777763 44322     22233333 6788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCchhHH--------HHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhh
Q 013969           79 LFIGSLACFFGYGVLWLAVSRTVESLPYW--------LLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGY  149 (433)
Q Consensus        79 ~~ig~~l~~~g~~~~~~~~~~~~~~~~~~--------~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~  149 (433)
                      +.++.++++++..+..+.       ++++        .+.+++++.|++.|..+......+.||+| ++||+..+....+
T Consensus        97 l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g  169 (438)
T PRK09952         97 LMLTVWMMGIATALIGLL-------PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVG  169 (438)
T ss_pred             HHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence            999999999988765542       1232        45668999999999888888899999998 5699999998888


Q ss_pred             hhhHHHHHHHHHH
Q 013969          150 GGLSAAVFTEIYN  162 (433)
Q Consensus       150 ~glg~~i~~~l~~  162 (433)
                      .++|..+...+..
T Consensus       170 ~~~G~~l~~~~~~  182 (438)
T PRK09952        170 YGVGLLLSTGLVS  182 (438)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888766654443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.59  E-value=1.5e-13  Score=140.24  Aligned_cols=157  Identities=17%  Similarity=0.196  Sum_probs=116.4

Q ss_pred             CccccCCCCCChHhHHHHHHHHHHhhhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHH
Q 013969            1 MVTLKAGSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVL   79 (433)
Q Consensus         1 ~~~~~~~~~~~w~~l~~~~l~~~~~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~   79 (433)
                      |-+.||..+-....++....+. ..+....+++..+.+++++|+|..+++++.+...+... ..++.|++.||+|+|+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l   79 (400)
T PRK11646          1 MSRVSQARNLGKYFLLIDNMLV-VLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMI   79 (400)
T ss_pred             CCCCcccccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHH
Confidence            4455665544443333333222 23334456666667889999999999997777666664 589999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHH
Q 013969           80 FIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFT  158 (433)
Q Consensus        80 ~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~  158 (433)
                      .++.++..++++.+...       +++|.+++.+++.|++.+....+....+.+++| ++||++.|+......+|..+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~  152 (400)
T PRK11646         80 VTGMLMRAAGFATMAIA-------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGA  152 (400)
T ss_pred             HHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988866441       246777778888888887666666778899997 5799999999999889988887


Q ss_pred             HHHHHHh
Q 013969          159 EIYNMLL  165 (433)
Q Consensus       159 ~l~~~~~  165 (433)
                      ++...+.
T Consensus       153 ~l~g~l~  159 (400)
T PRK11646        153 LLGSWLL  159 (400)
T ss_pred             HHHHHHH
Confidence            7666554

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.59  E-value=1.6e-13  Score=139.01  Aligned_cols=146  Identities=13%  Similarity=-0.013  Sum_probs=106.8

Q ss_pred             hHhHHHHHHHHHH-hhhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHH
Q 013969           12 WVGLGAAVWVQIA-AGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFG   89 (433)
Q Consensus        12 w~~l~~~~l~~~~-~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g   89 (433)
                      |+.+....+...+ ....+.+....|.+.+++|+|..+.+++.+...++.. ..++.|++.||+|||+++.++.++..++
T Consensus         7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~   86 (394)
T PRK11652          7 VNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILG   86 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence            4444444443322 2334455556788999999999999998887778775 4899999999999999999999988888


Q ss_pred             HHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969           90 YGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                      .+.+...       ++++.+++.+++.|++.+...........+++| ++|+.+.++...+..++..+.+.+...+
T Consensus        87 ~~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l  155 (394)
T PRK11652         87 TLVALFA-------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLL  155 (394)
T ss_pred             HHHHHHH-------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7765431       246777778888888877655555566778888 5699999998777777776665555433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.58  E-value=7.4e-14  Score=144.98  Aligned_cols=128  Identities=16%  Similarity=-0.016  Sum_probs=99.1

Q ss_pred             hhhccHHHHHHHh--------CCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHH---
Q 013969           30 NFPLYSHSLKSVL--------GFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAV---   97 (433)
Q Consensus        30 ~~s~~~~~l~~~~--------g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~---   97 (433)
                      ..+...|.+++.+        +++..+.+++.+...++.. .+++.|++.||+|||++++++.+++.++.+..++..   
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~  109 (479)
T PRK10077         30 VISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGF  109 (479)
T ss_pred             eehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            3344445577777        8999999998888888885 499999999999999999999999888776554310   


Q ss_pred             hcc-cCc-hhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHH
Q 013969           98 SRT-VES-LPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVF  157 (433)
Q Consensus        98 ~~~-~~~-~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~  157 (433)
                      ... .++ ..++.+++++++.|++.|..+......+.+|+| ++||+++|+...+..+|..+.
T Consensus       110 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~  172 (479)
T PRK10077        110 TSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVV  172 (479)
T ss_pred             ccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHH
Confidence            000 001 124456678999999999988888999999998 569999999988887887665

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.57  E-value=2.5e-13  Score=135.85  Aligned_cols=122  Identities=11%  Similarity=0.043  Sum_probs=81.6

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHh-hccccccccccccCchHHHHHH-HHHHHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 013969           37 SLKSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASNKFPPWLVLFIG-SLACFFGYGVLWLAVSRTVESLPYWLLWIALC  114 (433)
Q Consensus        37 ~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig-~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~  114 (433)
                      .+++++|+|..+++++.+...+.. ..+++.|++.||+|+|+.+++. .++..++...+..       +++++.+++.++
T Consensus        23 ~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~   95 (375)
T TIGR00899        23 FLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW-------NRNYFLLLVLGV   95 (375)
T ss_pred             HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh-------cchHHHHHHHHH
Confidence            468899999999999877766655 4589999999999999876654 4444445444332       134677666666


Q ss_pred             HHHhchhhhhhhHHHHHhhcccCC-chhH--HHHHHhhhhhHHHHHHHHHHHHh
Q 013969          115 VATNSSAWLGTAVLVTNMRNFPLS-RGTV--AGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       115 l~g~g~g~~~~~~~~~~~~~Fp~~-RG~a--~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      +.|.+.+...........++.|++ |+.+  .++...+.++|.++.+++...+.
T Consensus        96 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~  149 (375)
T TIGR00899        96 LLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLA  149 (375)
T ss_pred             HHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH
Confidence            665544444444445556666643 5544  57777777788888776666554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.56  E-value=2.6e-13  Score=137.64  Aligned_cols=130  Identities=13%  Similarity=0.007  Sum_probs=96.0

Q ss_pred             hhhhhccHHHHHHHhCCCHHHH-----HHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhccc
Q 013969           28 AYNFPLYSHSLKSVLGFNQHQL-----TMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTV  101 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g~s~~~~-----~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~  101 (433)
                      .+.+..+.|.+.+++|++..+.     +++.+...++.. ..++.|++.||+|+|+++.++.++.+++.+.+...     
T Consensus        30 ~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----  104 (408)
T PRK09874         30 FSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA-----  104 (408)
T ss_pred             HHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH-----
Confidence            3455667788888899987653     555555556654 58999999999999999999999888887755431     


Q ss_pred             CchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          102 ESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       102 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                        .+++.+++.+++.|++.+. +......+.+++| ++||++.|+...+..+|..+.+++...+.
T Consensus       105 --~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  166 (408)
T PRK09874        105 --QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA  166 (408)
T ss_pred             --hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2467777777777776553 4445566788888 56999999998888888877766655443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.56  E-value=9.7e-14  Score=138.59  Aligned_cols=130  Identities=8%  Similarity=-0.139  Sum_probs=92.2

Q ss_pred             hhhccHHHHHHHhCCCHHHHHHHHHHHHHHhhcccccccccccc-----CchHHH-HHHHHHHHHHHHHHHHHHhcccCc
Q 013969           30 NFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKF-----PPWLVL-FIGSLACFFGYGVLWLAVSRTVES  103 (433)
Q Consensus        30 ~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~~~~~G~l~Dr~-----G~r~~~-~ig~~l~~~g~~~~~~~~~~~~~~  103 (433)
                      .++...|.+.+++|+|.+|++++.+.. +.....++.|++.||+     ||||.+ +++.++.++....+.+. ..   .
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~~-~~~~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~-~~---~   80 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLVG-LPYSLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL-VP---S   80 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC-Cc---c
Confidence            344556778899999999999986553 3323489999999998     899974 56666666665544331 11   1


Q ss_pred             hhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969          104 LPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus       104 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                      .+++.++...++.+.+.+....+....+.+++| ++|+++.|+...+..+|..+.+.+...+
T Consensus        81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l  142 (356)
T TIGR00901        81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVL  142 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            235566565556666666666777788999997 5699999999999889888776665433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.53  E-value=7.4e-13  Score=135.69  Aligned_cols=130  Identities=13%  Similarity=0.003  Sum_probs=101.5

Q ss_pred             hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhH
Q 013969           28 AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPY  106 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~  106 (433)
                      ...+..-.|.+.++++.+.++.++..+...++.. ..++.|++.||+|||+++.++.++.+++.......       +++
T Consensus        32 ~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-------~~~  104 (413)
T PRK15403         32 TDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-------TSM  104 (413)
T ss_pred             HHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-------CCH
Confidence            4555556677899999999999987666667765 58999999999999999999999888887755431       247


Q ss_pred             HHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969          107 WLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus       107 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                      +.+++.+++.|++.+.........+.++||+ +|++++++..+..++|..+.+.+...+
T Consensus       105 ~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l  163 (413)
T PRK15403        105 TQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAAL  163 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888889999988876555556677889985 589999998888888887765554433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.53  E-value=4e-13  Score=134.36  Aligned_cols=132  Identities=11%  Similarity=-0.023  Sum_probs=92.1

Q ss_pred             hhhhhccHHHHHHHhC--CCHHHHHHHHHHHHH-----Hh-hccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhc
Q 013969           28 AYNFPLYSHSLKSVLG--FNQHQLTMLGVANDI-----GE-NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSR   99 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g--~s~~~~~~i~~~~~~-----~~-~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~   99 (433)
                      .|.++...+.+.+++.  .++++.+...+...+     +. ..+++.|++.||+|+|+++.++.++..++.+..... .+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~~   87 (394)
T TIGR00883         9 FYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL-PS   87 (394)
T ss_pred             HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC-CC
Confidence            5666767777766654  444555553332222     22 237899999999999999999999999888766542 11


Q ss_pred             ccCchh---HHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHH
Q 013969          100 TVESLP---YWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIY  161 (433)
Q Consensus       100 ~~~~~~---~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~  161 (433)
                      . ....   .+.+++.+++.|++.+..+.+....+.+++| ++|+++.++...+..+|..+.+.+.
T Consensus        88 ~-~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~  152 (394)
T TIGR00883        88 Y-ATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTV  152 (394)
T ss_pred             h-hhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            0 0000   1235557888998888777777888999998 5699999999888888877765443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.52  E-value=8.8e-13  Score=129.43  Aligned_cols=133  Identities=24%  Similarity=0.247  Sum_probs=112.1

Q ss_pred             hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           27 NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        27 ~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      ..+.++.+.|.+.+++|.+..+.+++.+...++.. ..++.|++.||+|||+.+.++.++..++...+...       .+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~   86 (352)
T cd06174          14 DRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-------SS   86 (352)
T ss_pred             hhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-------cc
Confidence            45667778888889999999999998888878775 49999999999999999999999999988876552       24


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      ++.+++.+++.|++.+..+.+....+.+++|+ +|+++.++.....++|..+.+.+...+.+
T Consensus        87 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  148 (352)
T cd06174          87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE  148 (352)
T ss_pred             HHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777788899999888888888999999995 69999999999999999888766665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.50  E-value=4.9e-13  Score=136.68  Aligned_cols=133  Identities=9%  Similarity=-0.020  Sum_probs=101.6

Q ss_pred             hhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHH
Q 013969           31 FPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLL  109 (433)
Q Consensus        31 ~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l  109 (433)
                      ...+.|.+.++++.+..+.+++.+...++.. ..++.|++.||+|+|+++.++.++.++++..+......  ..++++.+
T Consensus        36 ~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~l  113 (417)
T PRK10489         36 LGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL--PEPSLLAI  113 (417)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc--CCCcHHHH
Confidence            3445666778888999999998888888875 48999999999999999999988888877655431111  12346777


Q ss_pred             HHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          110 WIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       110 ~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      ++.+++.|++.+....+....+.+++|+ +|+++.++.....++|..+.+.+...+.
T Consensus       114 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~  170 (417)
T PRK10489        114 YLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI  170 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence            7777888887777666667888999984 5999999988888888887766665544

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.50  E-value=5.9e-13  Score=135.92  Aligned_cols=163  Identities=12%  Similarity=0.020  Sum_probs=136.5

Q ss_pred             hhhhhhhccHHHHHHHhCCCHHH-HHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 013969           26 GNAYNFPLYSHSLKSVLGFNQHQ-LTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVES  103 (433)
Q Consensus        26 g~~y~~s~~~~~l~~~~g~s~~~-~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~  103 (433)
                      -.--..++..|.+++++|+|.+| .+.+.+....+.. ..+++|++.||+|+|+++.++++..++...++.+.       
T Consensus        40 e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa-------  112 (511)
T TIGR00806        40 QFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG-------  112 (511)
T ss_pred             HhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-------
Confidence            34567888899999999999999 8888888888875 59999999999999999999999999988876652       


Q ss_pred             hhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhcCChhHH--HHHHHHHH
Q 013969          104 LPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKL--LLVLAVGV  180 (433)
Q Consensus       104 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~--l~~~a~~~  180 (433)
                      .+++.+.+.+++.|++.|..+ +....+.+|||+ +|++++|+..++..+|.++.+++...+...+|+.|  +..+++.+
T Consensus       113 ~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s  191 (511)
T TIGR00806       113 TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVF  191 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            247788889999999999888 889999999994 69999999999999999999988888444455544  44567777


Q ss_pred             HHHHHHHHhhcccCCC
Q 013969          181 PAVCLVMMYFVRPCTP  196 (433)
Q Consensus       181 ~~v~l~~~~~~r~~~~  196 (433)
                      ..++++.+++++.+++
T Consensus       192 ~~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       192 MTFSVFLALFLKRPKR  207 (511)
T ss_pred             HHHHHHHHHhCCCCch
Confidence            8888888888885544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.50  E-value=4.2e-13  Score=145.94  Aligned_cols=182  Identities=13%  Similarity=0.023  Sum_probs=139.4

Q ss_pred             CCChHhHHHHHHHHHHhhh-hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHH
Q 013969            9 RPPWVGLGAAVWVQIAAGN-AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLAC   86 (433)
Q Consensus         9 ~~~w~~l~~~~l~~~~~g~-~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~   86 (433)
                      +.+|.+++...+..+..+. ....+...|.+++++|++..+.+++.+...+++.+ .+++|+++||+|||++++++.++.
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~  242 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            3456655555554444443 45677788899999999999999988888888864 899999999999999999999888


Q ss_pred             HHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969           87 FFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      +++.++..+.       ++++.+++++++.|+|.+..+......+.+++| ++||+++++..++..+|.++.+.+...+.
T Consensus       243 ~i~~ll~afa-------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       243 GFFAFFSSFV-------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             HHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877655432       247788888999999998888888899999999 56999999999998899887766554443


Q ss_pred             cC-------------ChhHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 013969          166 HN-------------SSSKLLLVLAVGVPAVCLVMMYFVRPCTPA  197 (433)
Q Consensus       166 ~~-------------~~~~~l~~~a~~~~~v~l~~~~~~r~~~~~  197 (433)
                      +.             ..|++++.++.++.++.++..+++++.|.+
T Consensus       316 ~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrw  360 (742)
T TIGR01299       316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRF  360 (742)
T ss_pred             HhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            21             124556666777777777777777776554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.49  E-value=4e-13  Score=137.53  Aligned_cols=132  Identities=17%  Similarity=0.116  Sum_probs=81.9

Q ss_pred             hhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHH
Q 013969           30 NFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWL  108 (433)
Q Consensus        30 ~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~  108 (433)
                      .++.+...+++++|+|+.+++++.+...++.. .+++.|++.||+|+|+++.++....+++...+......     ..+.
T Consensus        29 ~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  103 (420)
T PRK09528         29 WFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFA-----PLLQ  103 (420)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence            45555556788899999999998777777775 59999999999999999988776655543322110000     0111


Q ss_pred             --HHHHHHHHHhchhhhhhhHHHHHh---hcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          109 --LWIALCVATNSSAWLGTAVLVTNM---RNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       109 --l~~~~~l~g~g~g~~~~~~~~~~~---~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                        ......+.++..+..+.+......   +.++++||++.|......++|.++.+++...+.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~  166 (420)
T PRK09528        104 YNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN  166 (420)
T ss_pred             HHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh
Confidence              111112222222222222222333   3345668888888888888999888777665543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.47  E-value=1.4e-13  Score=148.23  Aligned_cols=135  Identities=13%  Similarity=0.022  Sum_probs=107.1

Q ss_pred             hhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHH--hc-------
Q 013969           30 NFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAV--SR-------   99 (433)
Q Consensus        30 ~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~--~~-------   99 (433)
                      .++...++++++|+++.++.+++.+...++.. ..++.|++.||+|+|+.+.+|.+++++|.+++++.-  .+       
T Consensus        51 ~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~  130 (633)
T TIGR00805        51 LVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTT  130 (633)
T ss_pred             HHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccc
Confidence            44556678999999999999999888888885 489999999999999999999999999998876531  00       


Q ss_pred             -----c-----------c-----------------C--chhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHH
Q 013969          100 -----T-----------V-----------------E--SLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVA  143 (433)
Q Consensus       100 -----~-----------~-----------------~--~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~  143 (433)
                           .           .                 .  +..+..+++.+++.|+|.+..++.....+.+|+| ++|++++
T Consensus       131 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~  210 (633)
T TIGR00805       131 VSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYI  210 (633)
T ss_pred             ccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHH
Confidence                 0           0                 0  0123445568999999999888888999999998 5699999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHH
Q 013969          144 GILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus       144 gi~~~~~glg~~i~~~l~~~~  164 (433)
                      |+..++..+|.++...+...+
T Consensus       211 ~i~~~~~~iG~~lG~llgg~l  231 (633)
T TIGR00805       211 GILESIAVFGPAFGYLLGSFC  231 (633)
T ss_pred             HHHHHHHHhhhHHHHHHHHHH
Confidence            999888888887765554433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.45  E-value=2.7e-12  Score=147.20  Aligned_cols=128  Identities=15%  Similarity=0.068  Sum_probs=95.3

Q ss_pred             ccHHHHHHHhCCCHHH--HHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHH
Q 013969           33 LYSHSLKSVLGFNQHQ--LTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLL  109 (433)
Q Consensus        33 ~~~~~l~~~~g~s~~~--~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l  109 (433)
                      +..+.+..+++.+.+.  .+++.++..++.. +++++|+++||+|+|++++++.++..++.++..+....    .+++.+
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~----~~~~~l  106 (1146)
T PRK08633         31 LIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL----GWFWLA  106 (1146)
T ss_pred             HHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH----ccHHHH
Confidence            3444566677776544  4666666666664 59999999999999999999887766655544332211    237788


Q ss_pred             HHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969          110 WIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus       110 ~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                      ++.+++.|++.++...+....+.+++| ++|++++|+...+.++|.++.+.+...+
T Consensus       107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l  162 (1146)
T PRK08633        107 FAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFL  162 (1146)
T ss_pred             HHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            888889999988888778889999998 5699999999999888887776665544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.44  E-value=8.5e-12  Score=126.99  Aligned_cols=122  Identities=15%  Similarity=0.094  Sum_probs=97.1

Q ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHH
Q 013969           34 YSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIA  112 (433)
Q Consensus        34 ~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~  112 (433)
                      ..+.+.++++.+..+.+++.+...+... +.|++|++.||+|+|++++++.++.+++.+.+...       .++   .+.
T Consensus        25 ~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~-------~~~---~~~   94 (393)
T PRK11195         25 AAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG-------IHP---LLA   94 (393)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-------HHH---HHH
Confidence            3445678899999999998887777775 59999999999999999999999988876654331       122   345


Q ss_pred             HHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          113 LCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       113 ~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      +++.|++.++.+++....+.+++| ++|+++.|+......+|..+.+.+...+.
T Consensus        95 r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~  148 (393)
T PRK11195         95 YGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA  148 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678899999888888999999999 56999999998887777777766655544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.43  E-value=8.1e-12  Score=126.44  Aligned_cols=240  Identities=12%  Similarity=0.020  Sum_probs=148.9

Q ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHH----HHHHHHHHHHHHHHHHHHhcccCchhHHH
Q 013969           34 YSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVL----FIGSLACFFGYGVLWLAVSRTVESLPYWL  108 (433)
Q Consensus        34 ~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~----~ig~~l~~~g~~~~~~~~~~~~~~~~~~~  108 (433)
                      |.|.+.+++|+|.+|++++.+...+... .+++.|.+.||+|+|+..    .++..+..+.+.   . .     ++++|.
T Consensus        26 ~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~---~-~-----~~~~~~   96 (382)
T TIGR00902        26 FFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS---A-G-----AHNAWL   96 (382)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH---H-h-----hhhHHH
Confidence            4557788899999999997777666664 599999999999975432    333222222111   1 1     124777


Q ss_pred             HHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 013969          109 LWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMM  188 (433)
Q Consensus       109 l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~l~~~a~~~~~v~l~~~  188 (433)
                      +++.+++.+.+.+... +....+..+++++|+++.|....+.++|.++.+++...+.+.                     
T Consensus        97 l~~~~~l~~~~~~~~~-p~~~al~~~~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~---------------------  154 (382)
T TIGR00902        97 LFIAIGLFALFFSAGM-PIGDALANTWQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM---------------------  154 (382)
T ss_pred             HHHHHHHHHHHHccch-hHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            7776666665555443 334444566688899999999888889998888777766532                     


Q ss_pred             hhcccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhhhhhhhhhhhhccccC
Q 013969          189 YFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRKRTS  268 (433)
Q Consensus       189 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~  268 (433)
                                       .+|+..+..   +++.+.                         +.......+         + 
T Consensus       155 -----------------~g~~~~f~~---~~~~~~-------------------------~~~~~~~~~---------~-  179 (382)
T TIGR00902       155 -----------------FDEQNILAI---LTAGLA-------------------------FMLIGFLIK---------P-  179 (382)
T ss_pred             -----------------cChhHHHHH---HHHHHH-------------------------HHHHHHHcC---------C-
Confidence                             122221111   000000                         000000000         0 


Q ss_pred             cccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHhhcccccccccCCCCCCCCCcHHHHh
Q 013969          269 ESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAV  348 (433)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l  348 (433)
                      +.                       ++   ++         ++ ++            +    +.  +   +..+.++.+
T Consensus       180 ~~-----------------------~~---~~---------~~-~~------------~----~~--~---~~~~~~~~l  202 (382)
T TIGR00902       180 TI-----------------------PP---KD---------AI-PE------------D----ES--Q---GDSAFIALL  202 (382)
T ss_pred             CC-----------------------CC---Cc---------cc-cc------------c----cc--c---cchhHHHHH
Confidence            00                       00   00         00 00            0    00  0   012457899


Q ss_pred             hhhhHHHHHHHHHhhcccceeeecchhhHHHhhcCCcc--chhHHHHHHhHHHHhhhcccchHHHHHhhh
Q 013969          349 VKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDT--TILLSLFSFCNFVGRLGGGVVSEHFVRLVQ  416 (433)
Q Consensus       349 ~t~~Fwll~~~~~~~~g~g~~~i~n~~~i~~s~G~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~~~  416 (433)
                      |+|+||.+.+..++..++...+.+...+..++.|.++.  ....++..++..++.+++|.+.||+++|+.
T Consensus       203 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~  272 (382)
T TIGR00902       203 KNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL  272 (382)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH
Confidence            99999999988888777777777888888888888775  456777888888888888888888887764

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.43  E-value=7.4e-12  Score=131.28  Aligned_cols=133  Identities=12%  Similarity=-0.038  Sum_probs=96.2

Q ss_pred             hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhhcccccccccccc-----CchHH-HHHHHHHHHHHHHHHHHHHhccc
Q 013969           28 AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKF-----PPWLV-LFIGSLACFFGYGVLWLAVSRTV  101 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~~~~~G~l~Dr~-----G~r~~-~~ig~~l~~~g~~~~~~~~~~~~  101 (433)
                      .+..+-..|.+.++.|.|.++++.++... ......++.|.+.||+     |+|+. +.++.+..+++...+++.  .  
T Consensus        28 ~~~~~~~l~~~l~~~g~~~~~ig~~~~~~-~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~--~--  102 (491)
T PRK11010         28 LALTSGTLQAWMTVENIDLKTIGFFSLVG-QAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL--E--  102 (491)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc--C--
Confidence            34445556777778899999999874433 2234689999999999     99986 556666666666654432  1  


Q ss_pred             CchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          102 ESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       102 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      +..+++.+.+..++.+++.+....+......+|+| ++||++.++...+..+|..+.+.+...+.
T Consensus       103 ~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~  167 (491)
T PRK11010        103 PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA  167 (491)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12246777767777777777777777788999998 67999999999998898887766555443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.42  E-value=1.9e-11  Score=124.24  Aligned_cols=148  Identities=15%  Similarity=0.044  Sum_probs=82.8

Q ss_pred             CCCCChHhHHHHHHHHHHhhhhhhhhccHHHHHHHhCCCHHHHHHHHHH-HHHHhhccccccccccccCchHHHH-HHHH
Q 013969            7 GSRPPWVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVA-NDIGENVGLLPGLASNKFPPWLVLF-IGSL   84 (433)
Q Consensus         7 ~~~~~w~~l~~~~l~~~~~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~-~~~~~~~~~~~G~l~Dr~G~r~~~~-ig~~   84 (433)
                      ...+.|..++..++..+..+  ...+.+.+.+++++|+|.++++++.+. ..++...+++.|.+.||+|+||.++ .+.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~   90 (393)
T PRK15011         13 FDLTSTAFLIVAFLTGIAGA--LQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCL   90 (393)
T ss_pred             ccchhHHHHHHHHHHHHHHH--HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence            33444544444333332222  233344444789999999999997554 4445556555555599999998755 4445


Q ss_pred             HHHHHHHHHHHHHhcccCchhHHHHHHHHH-HHHhchhhhhhhHHHHHhhcccCCch----hHHHHHHhhhhhHHHHHHH
Q 013969           85 ACFFGYGVLWLAVSRTVESLPYWLLWIALC-VATNSSAWLGTAVLVTNMRNFPLSRG----TVAGILKGYGGLSAAVFTE  159 (433)
Q Consensus        85 l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~-l~g~g~g~~~~~~~~~~~~~Fp~~RG----~a~gi~~~~~glg~~i~~~  159 (433)
                      +.+++...+.+.       .+++.+++.+. +.+.+. . ..+......++++++|+    ...++..++.++|.++.++
T Consensus        91 ~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~  161 (393)
T PRK15011         91 LGVLACTLFAWN-------RNYFVLLFVGVFLSSFGS-T-ANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPP  161 (393)
T ss_pred             HHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHH-h-hHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhH
Confidence            544555443331       23566554433 333333 2 33344444444433333    3346777777888888877


Q ss_pred             HHHHHh
Q 013969          160 IYNMLL  165 (433)
Q Consensus       160 l~~~~~  165 (433)
                      +...+.
T Consensus       162 i~~~l~  167 (393)
T PRK15011        162 LAYALA  167 (393)
T ss_pred             HHHHHH
Confidence            776654

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.41  E-value=1.5e-11  Score=124.35  Aligned_cols=124  Identities=14%  Similarity=0.163  Sum_probs=84.4

Q ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCch----HHHHHHHHHHHHHHHHHHHHHhcccCchhHH
Q 013969           33 LYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPW----LVLFIGSLACFFGYGVLWLAVSRTVESLPYW  107 (433)
Q Consensus        33 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r----~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~  107 (433)
                      -+.|.+.+++|+|.++++++.+...+... .+++.|.+.||+|+|    +.+.++.+...+.+   .  ..    ++++|
T Consensus        25 p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~---~--~~----~~~~~   95 (382)
T PRK11128         25 PFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAF---W--FG----AHSFW   95 (382)
T ss_pred             hhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH---H--Hh----cccHH
Confidence            34456678899999999998777777765 599999999999984    33333332222211   1  11    13478


Q ss_pred             HHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          108 LLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       108 ~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      .+++.+.+.|++.+..... ...+..+++++|+++.|.......+|.++.+++...+.+
T Consensus        96 ~l~i~~~l~g~~~~~~~~~-~~a~~~~~~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~  153 (382)
T PRK11128         96 LLFVAIGLFNLFFSPLVPL-TDALANTWQKQIGLDYGKVRLWGSIAFVIGSALTGKLVS  153 (382)
T ss_pred             HHHHHHHHHHHHHcccccH-HHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            8777777777766554443 344455557778888888888888888888877776653

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.41  E-value=1.2e-11  Score=125.95  Aligned_cols=137  Identities=12%  Similarity=0.028  Sum_probs=96.9

Q ss_pred             Hhhhhhhhhc-cHHHHHHHhCCCHHHHHHHHHHHHHHhhcccccccccccc-----CchH-HHHHHHHHHHHHHHHHHHH
Q 013969           24 AAGNAYNFPL-YSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKF-----PPWL-VLFIGSLACFFGYGVLWLA   96 (433)
Q Consensus        24 ~~g~~y~~s~-~~~~l~~~~g~s~~~~~~i~~~~~~~~~~~~~~G~l~Dr~-----G~r~-~~~ig~~l~~~g~~~~~~~   96 (433)
                      ..|..+.+.. -.|.+-++.|+|.+|++++...... ..+.++.|++.||+     |+|| .+.++.+..+++...+.+.
T Consensus        10 ~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~   88 (402)
T PRK11902         10 ASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC   88 (402)
T ss_pred             HHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence            3455444332 3344556679999999998665543 45699999999999     8876 6777777777776655442


Q ss_pred             HhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969           97 VSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus        97 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                        ..  ..++|.++++.++.+...+..+.+....+.+++|+ +|+++.++...++++|..+.+.+...+.
T Consensus        89 --~~--~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~  154 (402)
T PRK11902         89 --PP--HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLA  154 (402)
T ss_pred             --Cc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence              11  12466666666666666666667778889999985 4999999999998888888776655443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.39  E-value=2e-11  Score=123.92  Aligned_cols=124  Identities=13%  Similarity=-0.021  Sum_probs=76.0

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcc-cCchhHHHHHHHHH
Q 013969           37 SLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRT-VESLPYWLLWIALC  114 (433)
Q Consensus        37 ~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~-~~~~~~~~l~~~~~  114 (433)
                      .+++++|+|..+.+++.+...+... ..++.|++.||+|+|++++.+.+..+++...+....... .....++..++.++
T Consensus        28 ~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (396)
T TIGR00882        28 WLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGL  107 (396)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3577899999999998777777775 589999999999999999988776665544332211110 00001222233344


Q ss_pred             HHHhchhhhhhhHHHHHhhcc---cCCchhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969          115 VATNSSAWLGTAVLVTNMRNF---PLSRGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus       115 l~g~g~g~~~~~~~~~~~~~F---p~~RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                      +.|++.+....    ....++   +++++...|......++|.++.+++...+
T Consensus       108 ~~g~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l  156 (396)
T TIGR00882       108 YLGFVFSAGAG----AIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGIL  156 (396)
T ss_pred             HHHHHhccchh----hHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhh
Confidence            44544443332    223333   24456666776666678887776665443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.38  E-value=1.9e-11  Score=140.49  Aligned_cols=123  Identities=15%  Similarity=0.034  Sum_probs=86.8

Q ss_pred             HHHHhCCCHHH-HHHHHHHHHHHh-hccccccccccccCchHHHHHHHH--HHHHHHHHHHHHHhcccCchhHHHHHHHH
Q 013969           38 LKSVLGFNQHQ-LTMLGVANDIGE-NVGLLPGLASNKFPPWLVLFIGSL--ACFFGYGVLWLAVSRTVESLPYWLLWIAL  113 (433)
Q Consensus        38 l~~~~g~s~~~-~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~--l~~~g~~~~~~~~~~~~~~~~~~~l~~~~  113 (433)
                      +....+.+... .++..++..+.. ++++++|+++||+|+|+++.....  +...+...+..  .    ..++|++++.+
T Consensus        42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~--~----~~s~~~l~~~~  115 (1140)
T PRK06814         42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGF--H----LNSVPLLFAAL  115 (1140)
T ss_pred             hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH--H----HhhHHHHHHHH
Confidence            34444444434 455555566666 459999999999999998643222  22222221111  1    12478888899


Q ss_pred             HHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          114 CVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       114 ~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      ++.|++.++...+...++.+++| ++|++++|+..++.++|.++.+++...+..
T Consensus       116 ~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~  169 (1140)
T PRK06814        116 FLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI  169 (1140)
T ss_pred             HHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998888888899999998 569999999999999999888887776654

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.37  E-value=8.3e-13  Score=132.72  Aligned_cols=139  Identities=12%  Similarity=0.096  Sum_probs=112.1

Q ss_pred             hHhHHHHHHHHHHh-hhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHh-hccccccccccccCchHHHHHHHHHHHHH
Q 013969           12 WVGLGAAVWVQIAA-GNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASNKFPPWLVLFIGSLACFFG   89 (433)
Q Consensus        12 w~~l~~~~l~~~~~-g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g   89 (433)
                      |+.++.-.++.+.. .--|+..-..+.+++.||++.+..+++.+...+.. .++|+.|++.|||.|++++.+|..+..++
T Consensus        32 ~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~A  111 (493)
T KOG1330|consen   32 TLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLA  111 (493)
T ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHH
Confidence            33343333444333 34677777778899999999999999988887776 56999999999999999999999999998


Q ss_pred             HHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHH
Q 013969           90 YGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVF  157 (433)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~  157 (433)
                      .+...+.       ..+|++.+++.+.|+|-+...+.+...++..|| ++|+++.|+.......|+.+.
T Consensus       112 v~~~~fs-------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG  173 (493)
T KOG1330|consen  112 VFASGFS-------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLG  173 (493)
T ss_pred             HHHHHHH-------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccccccee
Confidence            8855442       238999999999999999888888999999999 579999999877766666554

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.37  E-value=1.5e-10  Score=115.05  Aligned_cols=267  Identities=18%  Similarity=0.129  Sum_probs=184.0

Q ss_pred             HHhhh-hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcc
Q 013969           23 IAAGN-AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRT  100 (433)
Q Consensus        23 ~~~g~-~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~  100 (433)
                      +..|. .-.-.+..|.+++.|++++.|++++..+...+.. .++++|++.+|+|.|+.+++|..++++|+.+++-+... 
T Consensus        23 fl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~-  101 (422)
T COG0738          23 FLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS-  101 (422)
T ss_pred             HHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh-
Confidence            33443 4566789999999999999999999888777775 49999999999999999999999999999988753222 


Q ss_pred             cCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 013969          101 VESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVG  179 (433)
Q Consensus       101 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~l~~~a~~  179 (433)
                         -.+..++...++.|.|.+...+++...+....|+ +...=+.+..+++++|+++.+++.+.++..++...       
T Consensus       102 ---~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~-------  171 (422)
T COG0738         102 ---KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALT-------  171 (422)
T ss_pred             ---hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhc-------
Confidence               1244444466778889999999999999999975 46667788999999999999999988764221000       


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCCCCcc--------hHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHH
Q 013969          180 VPAVCLVMMYFVRPCTPASGEDSAAPSH--------FLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLM  251 (433)
Q Consensus       180 ~~~v~l~~~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  251 (433)
                                    .      ++++...        +++-|..   ++.++..                         +.
T Consensus       172 --------------~------~~~~~~~~~~~~~~~v~~pYl~---~~~~lvl-------------------------l~  203 (422)
T COG0738         172 --------------M------SAAQILAIKGADASSVQFPYLI---LAGLLVL-------------------------LA  203 (422)
T ss_pred             --------------c------CHHHHHHHHHHHHHhhhhHHHH---HHHHHHH-------------------------HH
Confidence                          0      0001111        2222221   1111100                         00


Q ss_pred             hhhhhhhhhhhhccccCcccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHhhccccccc
Q 013969          252 APLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGEGAVRR  331 (433)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (433)
                      .-.. .      .+.|+.                         +   +             +++++              
T Consensus       204 v~~~-~------~k~p~~-------------------------~---~-------------~~~~~--------------  221 (422)
T COG0738         204 VLIL-L------SKLPDL-------------------------Q---V-------------AAPSL--------------  221 (422)
T ss_pred             HHHH-h------ccCCcC-------------------------C---c-------------ccccc--------------
Confidence            0000 0      001111                         0   0             01100              


Q ss_pred             ccCCCCCCCCCcHHHHhhhhhHHHHHHHHHhhcccceeeecchhhHHHh-hcCCcc--chhHHHHHHhHHHHhhhcccch
Q 013969          332 KKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIA-QGVHDT--TILLSLFSFCNFVGRLGGGVVS  408 (433)
Q Consensus       332 ~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g~~~i~n~~~i~~s-~G~~~~--~~~vsl~si~n~~GRl~~G~ls  408 (433)
                      .+  +   ++.+..++.|+|.+|+-.+..++-.|.-.+.=+.+.+++.+ +|.++.  +.+++.+-++-.+||+++-++.
T Consensus       222 ~~--~---~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm  296 (422)
T COG0738         222 GA--S---GSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALM  296 (422)
T ss_pred             cc--c---ccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00  1   12367899999999999999999999999999999999999 576654  6799999999999998777776


Q ss_pred             HHHHHhh
Q 013969          409 EHFVRLV  415 (433)
Q Consensus       409 D~~~~~~  415 (433)
                      .|+...+
T Consensus       297 ~~~~~~k  303 (422)
T COG0738         297 SRIKPEK  303 (422)
T ss_pred             HHhCHHH
Confidence            6665443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.32  E-value=1.3e-10  Score=119.99  Aligned_cols=158  Identities=15%  Similarity=0.126  Sum_probs=119.3

Q ss_pred             HHHHHHhC--CCHHHHHH----HHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHH
Q 013969           36 HSLKSVLG--FNQHQLTM----LGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWL  108 (433)
Q Consensus        36 ~~l~~~~g--~s~~~~~~----i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~  108 (433)
                      ..+.+++|  .|.++..+    +.+...+|..+ ++++|+++||+|||..+.++.++..++.+++......    .++.+
T Consensus        43 ~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~----~~~e~  118 (485)
T KOG0569|consen   43 ETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA----PSFEM  118 (485)
T ss_pred             HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh----hhHHH
Confidence            33455666  56665543    34455566654 8999999999999999999999888877766654322    24677


Q ss_pred             HHHHHHHHHhchhhhhhhHHHHHhhcccCC-chhHHHHHHhhhhhHHHHHHHHHHH-Hhc-CChhHHHHHHHHHHHHHHH
Q 013969          109 LWIALCVATNSSAWLGTAVLVTNMRNFPLS-RGTVAGILKGYGGLSAAVFTEIYNM-LLH-NSSSKLLLVLAVGVPAVCL  185 (433)
Q Consensus       109 l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~-~~~-~~~~~~l~~~a~~~~~v~l  185 (433)
                      +.+-+++.|+..|.........+.|-=|++ ||....+...+..+|-.+..++... ++. .+.|.+++....+++++.+
T Consensus       119 li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l  198 (485)
T KOG0569|consen  119 LILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL  198 (485)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH
Confidence            777899999999988888888899999966 9999999888887777766555444 443 4568888888898998888


Q ss_pred             HHHhhcccCCCC
Q 013969          186 VMMYFVRPCTPA  197 (433)
Q Consensus       186 ~~~~~~r~~~~~  197 (433)
                      +..+++++-|++
T Consensus       199 ~~l~~~PESPk~  210 (485)
T KOG0569|consen  199 ALLPFLPESPKY  210 (485)
T ss_pred             HHHhcCCCCcch
Confidence            888888777664

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.31  E-value=3.5e-11  Score=125.25  Aligned_cols=254  Identities=16%  Similarity=0.086  Sum_probs=182.2

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 013969           38 LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVA  116 (433)
Q Consensus        38 l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  116 (433)
                      ++++.+....|.+.+.+...++.. +.+++|.|.||+++.+.+....+..++-.++-+. .      .+++.+.+.+++.
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~-~------~s~~~~ialr~ll  144 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA-V------HSFPGLIALRFLL  144 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-H------hhhHHHHHHHHHH
Confidence            457888888999998888888875 4899999999999887777666655553322211 1      2478888899999


Q ss_pred             HhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhc-------CChhHHHHHHHHHHHHHHHHHH
Q 013969          117 TNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLH-------NSSSKLLLVLAVGVPAVCLVMM  188 (433)
Q Consensus       117 g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~-------~~~~~~l~~~a~~~~~v~l~~~  188 (433)
                      |+..+..+++....+..||. ++||+-+|+..+..++|+++.+.+...+++       .+|++.+++-|++.++.++++.
T Consensus       145 Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f  224 (495)
T KOG2533|consen  145 GLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF  224 (495)
T ss_pred             HHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence            99998888888999999997 569999999999999999888888877653       2466677777777777777777


Q ss_pred             hhcccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhhhhhhhhhhhhccccC
Q 013969          189 YFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICRKRTS  268 (433)
Q Consensus       189 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~  268 (433)
                      +++++.|++..-                                 +++.++..              .+      +    
T Consensus       225 ~~lp~~P~~~~f---------------------------------l~~~ek~~--------------~~------~----  247 (495)
T KOG2533|consen  225 FFLPDNPSKAWF---------------------------------LTDEEKEL--------------VV------E----  247 (495)
T ss_pred             EEecCChhhccc---------------------------------cchHHHHH--------------HH------H----
Confidence            777665542100                                 00000000              00      0    


Q ss_pred             cccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHhhcccccccccCCCCCCCCCcHHHHh
Q 013969          269 ESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDFKFTEAV  348 (433)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l  348 (433)
                      +.                     +.++   .             +.            .    .++    .+...++|++
T Consensus       248 ~~---------------------~~~~---~-------------~~------------~----~~~----~~~~~~~~a~  270 (495)
T KOG2533|consen  248 RL---------------------RESP---S-------------GG------------I----ENK----FKWKGFKEAL  270 (495)
T ss_pred             HH---------------------Hhcc---C-------------CC------------c----ccc----cCHHHHHHHH
Confidence            00                     0000   0             00            0    000    1234678999


Q ss_pred             hhhhHHHHHHHHHhhcccceeeecchhhHHHhh-cCCcc--chhHHHHHHhHHHHhhhcccchHHHH
Q 013969          349 VKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQ-GVHDT--TILLSLFSFCNFVGRLGGGVVSEHFV  412 (433)
Q Consensus       349 ~t~~Fwll~~~~~~~~g~g~~~i~n~~~i~~s~-G~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~  412 (433)
                      ++|..|.+.+..+|.........+-+..+.++. |++..  ..+-..+.+...+|-++.|++|||+.
T Consensus       271 ~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~  337 (495)
T KOG2533|consen  271 KDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK  337 (495)
T ss_pred             hchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh
Confidence            999999999999999998888888888888883 46553  56888899999999999999999964

>TIGR00889 2A0110 nucleoside transporter

Probab=99.30  E-value=8.5e-11  Score=120.76  Aligned_cols=82  Identities=11%  Similarity=0.028  Sum_probs=57.7

Q ss_pred             hccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCc-hHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHH
Q 013969           32 PLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPP-WLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLL  109 (433)
Q Consensus        32 s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~-r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l  109 (433)
                      +.+.+.+++++|+|.+|++++.....++.. ..++.|++.||+|+ |+++.++.+..+++.....+.       .+++.+
T Consensus        23 ~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~   95 (418)
T TIGR00889        23 VTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV-------TTPAGM   95 (418)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh-------cCHHHH
Confidence            334445688899999999998888778875 59999999999965 778887777776665543321       135555


Q ss_pred             HHHHHHHHhch
Q 013969          110 WIALCVATNSS  120 (433)
Q Consensus       110 ~~~~~l~g~g~  120 (433)
                      ++.+++.|++.
T Consensus        96 ~~~~~l~~~~~  106 (418)
T TIGR00889        96 FPVLLANSLAY  106 (418)
T ss_pred             HHHHHHHHHHH
Confidence            55555555543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.29  E-value=1.3e-10  Score=121.87  Aligned_cols=179  Identities=12%  Similarity=0.050  Sum_probs=122.7

Q ss_pred             CCCChHhHHHHHHHHH-HhhhhhhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHh-hccccccccccc-cCchHHHHHHH
Q 013969            8 SRPPWVGLGAAVWVQI-AAGNAYNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASNK-FPPWLVLFIGS   83 (433)
Q Consensus         8 ~~~~w~~l~~~~l~~~-~~g~~y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr-~G~r~~~~ig~   83 (433)
                      .+++|+.+...+...+ .....|....+.+. +++++|+++++.+++........ ...+++|++.|| +|+|+++.+|.
T Consensus         9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~   88 (489)
T PRK10207          9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA   88 (489)
T ss_pred             hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence            3456666655555443 33456665544444 68889999999988666555444 457899999999 99999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC---CchhHHHHHHhhhhhHHHHHHHH
Q 013969           84 LACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL---SRGTVAGILKGYGGLSAAVFTEI  160 (433)
Q Consensus        84 ~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~---~RG~a~gi~~~~~glg~~i~~~l  160 (433)
                      +++.++++.+.+..     + ....+++.+++.|+|.|+........+.++||+   +|+.+.++...+.++|+++.+.+
T Consensus        89 ~~~~~g~~~~~~~~-----~-~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l  162 (489)
T PRK10207         89 IVLAIGYFMTGMSL-----L-KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSL  162 (489)
T ss_pred             HHHHHHHHHHHHhc-----c-chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHH
Confidence            99999998766521     1 122344567778889988887788899999973   35778888888888998876655


Q ss_pred             HHHHhcC-ChhHHHHHHHHHHHHHHHHHHhhccc
Q 013969          161 YNMLLHN-SSSKLLLVLAVGVPAVCLVMMYFVRP  193 (433)
Q Consensus       161 ~~~~~~~-~~~~~l~~~a~~~~~v~l~~~~~~r~  193 (433)
                      ...+.+. +|+. .+.+..+..+++++...+.++
T Consensus       163 ~g~l~~~~gw~~-~F~i~~i~~~~~~~~~~~~~~  195 (489)
T PRK10207        163 APVIADKFGYSV-TYNLCGAGLIIALLVYFACRG  195 (489)
T ss_pred             HHHHHHhhChHH-HHHHHHHHHHHHHHHHHHcch
Confidence            5554443 3433 334444455555555555553

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.25  E-value=1.6e-10  Score=118.39  Aligned_cols=124  Identities=10%  Similarity=0.052  Sum_probs=82.5

Q ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccc----cCchH-HHHHHHHHHHHHHHHHHHHHhcccCchhHH
Q 013969           34 YSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNK----FPPWL-VLFIGSLACFFGYGVLWLAVSRTVESLPYW  107 (433)
Q Consensus        34 ~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr----~G~r~-~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~  107 (433)
                      +.+.+.+++|+|..+++++.+...+... ..|+.|+++||    +|||| .++++.+..+++.++++.. .........+
T Consensus        22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~-~~~~~~~~~~  100 (437)
T TIGR00792        22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTT-PDFSATGKLV  100 (437)
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhC-CCCCcchHHH
Confidence            3344788999999999998887777775 59999999998    67755 5667777877776655442 1110011133


Q ss_pred             HHHHHHHHHHhchhhhhhhHHHHHhhccc--CCchhHHHHHHhhhhhHHHHHH
Q 013969          108 LLWIALCVATNSSAWLGTAVLVTNMRNFP--LSRGTVAGILKGYGGLSAAVFT  158 (433)
Q Consensus       108 ~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~~  158 (433)
                      .+++..++.+++.++...+......+..+  ++|+++.++...+..+|+.+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~  153 (437)
T TIGR00792       101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVA  153 (437)
T ss_pred             HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555666666655555566666663  5699998887766666665543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.21  E-value=5.6e-10  Score=116.65  Aligned_cols=158  Identities=12%  Similarity=0.041  Sum_probs=114.1

Q ss_pred             hhhhhhccHHH-HHHH--hCCCHHHHHHHHHHHHHHhh-ccccccccccc-cCchHHHHHHHHHHHHHHHHHHHHHhccc
Q 013969           27 NAYNFPLYSHS-LKSV--LGFNQHQLTMLGVANDIGEN-VGLLPGLASNK-FPPWLVLFIGSLACFFGYGVLWLAVSRTV  101 (433)
Q Consensus        27 ~~y~~s~~~~~-l~~~--~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr-~G~r~~~~ig~~l~~~g~~~~~~~~~~~~  101 (433)
                      ..|....+.|. ++++  +|+|..+.+.+.....++.. ..+++|+++|| +|+|+++.++.++.+++++++...     
T Consensus        25 ~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~-----   99 (475)
T TIGR00924        25 SYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS-----   99 (475)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc-----
Confidence            34544444444 4666  89999999997776666664 58999999999 899999999999999998866541     


Q ss_pred             CchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC----CchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHH
Q 013969          102 ESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL----SRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVL  176 (433)
Q Consensus       102 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~----~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~  176 (433)
                        ++++.+++...+.|+|.|.........+.++||+    +|+++.++...+.++|+++.+++...+.+. +++..+.+.
T Consensus       100 --~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~  177 (475)
T TIGR00924       100 --IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA  177 (475)
T ss_pred             --ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence              1345566666778888888777777888999973    388999998888999999888887776654 444433333


Q ss_pred             HHHHHHHHHHHHhhcc
Q 013969          177 AVGVPAVCLVMMYFVR  192 (433)
Q Consensus       177 a~~~~~v~l~~~~~~r  192 (433)
                      + +..+++++...+.+
T Consensus       178 ~-~~~~~~~l~~~~~~  192 (475)
T TIGR00924       178 A-VGMVIGLLTFFAGR  192 (475)
T ss_pred             H-HHHHHHHHHHHHcc
Confidence            3 33344444444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.18  E-value=6.8e-10  Score=116.77  Aligned_cols=155  Identities=9%  Similarity=0.017  Sum_probs=106.4

Q ss_pred             hhhhhhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccc-cCchHHHHHHHHHHHHHHHHHHHHHhccc
Q 013969           25 AGNAYNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNK-FPPWLVLFIGSLACFFGYGVLWLAVSRTV  101 (433)
Q Consensus        25 ~g~~y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr-~G~r~~~~ig~~l~~~g~~~~~~~~~~~~  101 (433)
                      ....|.+..+.+. +++++|+|.++.+.+......... ..+++|++.|| +|+|+++.+|.++.++++.++.+.  .  
T Consensus        34 ~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~--~--  109 (500)
T PRK09584         34 RFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS--G--  109 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh--c--
Confidence            3445666555555 578999999998876554444443 46789999999 599999999999999998766542  1  


Q ss_pred             CchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCC---chhHHHHHHhhhhhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 013969          102 ESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLS---RGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAV  178 (433)
Q Consensus       102 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~---RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~l~~~a~  178 (433)
                        ...+.+++.+.+.|+|.|.........+.++||++   |..+.++...+.++|+.+.+.+...+.+...+++.+.++.
T Consensus       110 --~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~  187 (500)
T PRK09584        110 --HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV  187 (500)
T ss_pred             --ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence              12344445566778888877766778899999843   4557788778888999887777776665433333333444


Q ss_pred             HHHHHHH
Q 013969          179 GVPAVCL  185 (433)
Q Consensus       179 ~~~~v~l  185 (433)
                      +..++++
T Consensus       188 i~~~i~~  194 (500)
T PRK09584        188 VGMLITV  194 (500)
T ss_pred             HHHHHHH
Confidence            4333433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.13  E-value=2e-09  Score=112.29  Aligned_cols=175  Identities=14%  Similarity=0.047  Sum_probs=113.3

Q ss_pred             ChHhHHHHHHHH-HHhhhhhhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHhh-cccccccccccc-CchHHHHHHHHHH
Q 013969           11 PWVGLGAAVWVQ-IAAGNAYNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKF-PPWLVLFIGSLAC   86 (433)
Q Consensus        11 ~w~~l~~~~l~~-~~~g~~y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~-G~r~~~~ig~~l~   86 (433)
                      ++..+...+... ......|.+..+.|. +++++|++..+.+.+........+ ..+++|++.||+ |+|+++.+|.++.
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~   86 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM   86 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence            444444444333 334567777767766 477899999999987666655554 588999999999 9999999999999


Q ss_pred             HHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC---CchhHHHHHHhhhhhHHHHHHHHHHH
Q 013969           87 FFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL---SRGTVAGILKGYGGLSAAVFTEIYNM  163 (433)
Q Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~---~RG~a~gi~~~~~glg~~i~~~l~~~  163 (433)
                      .++++++...  +.  .  ...+++...+.++|.|.........+.++||+   +|.++.++...+.++|+.+.+.+...
T Consensus        87 ~lg~lll~~~--~~--~--~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~  160 (493)
T PRK15462         87 AIGHVVLGAS--EI--H--PSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY  160 (493)
T ss_pred             HHHHHHHHHh--hc--c--hhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHH
Confidence            9998755421  10  1  12222222233445555544456678999984   59999999888888888777766666


Q ss_pred             HhcC-ChhHHHHHHHHHHHHHHHHHHhhcc
Q 013969          164 LLHN-SSSKLLLVLAVGVPAVCLVMMYFVR  192 (433)
Q Consensus       164 ~~~~-~~~~~l~~~a~~~~~v~l~~~~~~r  192 (433)
                      +.+. +|+..+. ++.+..+++++..++.+
T Consensus       161 L~~~~Gw~~~F~-iaaigm~l~li~~~~~~  189 (493)
T PRK15462        161 AQEEYSWAMGFG-LAAVGMIAGLVIFLCGN  189 (493)
T ss_pred             HHhhhChHHHHH-HHHHHHHHHHHHHHHhh
Confidence            6543 4444333 34444455554444433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=2.4e-10  Score=113.02  Aligned_cols=152  Identities=20%  Similarity=0.222  Sum_probs=120.2

Q ss_pred             HHhCCCHHHHHHHHHHHHHHh-hccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHh
Q 013969           40 SVLGFNQHQLTMLGVANDIGE-NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATN  118 (433)
Q Consensus        40 ~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~  118 (433)
                      +..+-++++++++.....+.. .+.|+.|.+.||+|.|..+++|.+.+.....+|.+.       .+++++++.+.+.|+
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-------~sy~~l~vAR~LQgv  171 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-------NSYPMLFVARSLQGV  171 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-------chhHHHHHHHHHhhh
Confidence            344566678888655555666 469999999999999999999999999999887662       247888889999999


Q ss_pred             chhhhhhhHHHHHhhcccC-C-chhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHhhcccCC
Q 013969          119 SSAWLGTAVLVTNMRNFPL-S-RGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVCLVMMYFVRPCT  195 (433)
Q Consensus       119 g~g~~~~~~~~~~~~~Fp~-~-RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~l~~~~~~r~~~  195 (433)
                      |.++..++.+..+++.||+ + ||.++|+..++.++|-.+.+|+...+++. +...=+++++++.++-..+-.+.+++..
T Consensus       172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~  251 (464)
T KOG3764|consen  172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE  251 (464)
T ss_pred             hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence            9999999999999999994 3 89999999999999999999988887763 3333355666666666666666666544


Q ss_pred             CCC
Q 013969          196 PAS  198 (433)
Q Consensus       196 ~~~  198 (433)
                      .+.
T Consensus       252 ~~~  254 (464)
T KOG3764|consen  252 MDP  254 (464)
T ss_pred             cCc
Confidence            433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.11  E-value=2.4e-09  Score=110.06  Aligned_cols=162  Identities=14%  Similarity=0.217  Sum_probs=111.8

Q ss_pred             ccHHHHHHHhCCCH--------HHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 013969           33 LYSHSLKSVLGFNQ--------HQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVES  103 (433)
Q Consensus        33 ~~~~~l~~~~g~s~--------~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~  103 (433)
                      .+.+.+.++.|++.        +..+...+...+... ..++.|++.||+|+|+++.++.++.++++..+... ...  .
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~-~~~--~  305 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG-DPE--Y  305 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-Ccc--h
Confidence            44455555666554        445665555555554 47899999999999999999999888877655431 110  1


Q ss_pred             hhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHH-hhhhhHHHHHHHHHHHHhcC-------ChhHHHH
Q 013969          104 LPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILK-GYGGLSAAVFTEIYNMLLHN-------SSSKLLL  174 (433)
Q Consensus       104 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~-~~~glg~~i~~~l~~~~~~~-------~~~~~l~  174 (433)
                      .+++.+++..++.|++.+..+......+.+++|+ +||++.|+.. ...++|+++.+++...+.+.       +++..+.
T Consensus       306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~  385 (418)
T TIGR00889       306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWL  385 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHH
Confidence            1234555567777777777666667788999995 5999999996 56788998888888777652       2444455


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCC
Q 013969          175 VLAVGVPAVCLVMMYFVRPCTPA  197 (433)
Q Consensus       175 ~~a~~~~~v~l~~~~~~r~~~~~  197 (433)
                      +.+++.++.+++..+++|+....
T Consensus       386 ~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       386 FFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHHHHHHHHHHHHHHHhCCcccC
Confidence            66666677777777888766443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.10  E-value=2e-09  Score=108.31  Aligned_cols=153  Identities=15%  Similarity=0.089  Sum_probs=108.4

Q ss_pred             CCCCCChHhHHHHHHHHHHhhhh-hhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHH
Q 013969            6 AGSRPPWVGLGAAVWVQIAAGNA-YNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGS   83 (433)
Q Consensus         6 ~~~~~~w~~l~~~~l~~~~~g~~-y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~   83 (433)
                      +..++||..+++..+..+..+.. -.|+.........|| +...+.+.+.+..+... +++++=|+.||+|-|...++|.
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt  116 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT  116 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence            46688999998888877776653 456666667788888 54445556655555554 5889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCchhHH--HHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHH
Q 013969           84 LACFFGYGVLWLAVSRTVESLPYW--LLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEI  160 (433)
Q Consensus        84 ~l~~~g~~~~~~~~~~~~~~~~~~--~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l  160 (433)
                      ++.++|..+=........+ +.+|  ....-..+.+..+.+....+.+...-||| ++|..|..+...++.+|.++...+
T Consensus       117 ~ln~iGa~Ir~iss~p~v~-~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll  195 (480)
T KOG2563|consen  117 VLNGIGAWIRLISSLPFVP-PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL  195 (480)
T ss_pred             HHHHHHHHHhhhccCcccc-ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence            9999998754432222121 1244  23334556666666555555688899997 679999999888888998876433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.10  E-value=4.3e-09  Score=106.94  Aligned_cols=159  Identities=8%  Similarity=0.032  Sum_probs=102.7

Q ss_pred             hhhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           28 AYNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        28 ~y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      .+.+..+.|. +++++|++..+.+.+.....+... ..++.|++.||+|+|+.+..+.+...+.+..+.  ..+     +
T Consensus       232 ~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~--~~~-----~  304 (393)
T PRK15011        232 NSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGML--MAH-----S  304 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH--HHh-----h
Confidence            3344445555 577899999998886555444444 478999999999999988877666555443222  111     2


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCL  185 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~l~~~a~~~~~v~l  185 (433)
                      .+.+.+..++.+++.+...........+.+|++||++.++......+|.++.+.+...+.+...+...+..+.+..++++
T Consensus       305 ~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~  384 (393)
T PRK15011        305 PAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATL  384 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            34444444444444444444445566788999999999998887788888887777766653333344445555556666


Q ss_pred             HHHhhccc
Q 013969          186 VMMYFVRP  193 (433)
Q Consensus       186 ~~~~~~r~  193 (433)
                      +..+++|+
T Consensus       385 ~~~~~~~~  392 (393)
T PRK15011        385 FCLLRIKD  392 (393)
T ss_pred             HHHHhhcC
Confidence            66666653

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.09  E-value=6.3e-09  Score=109.01  Aligned_cols=168  Identities=15%  Similarity=0.119  Sum_probs=101.8

Q ss_pred             hhhhhhhccHHHH-HHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 013969           26 GNAYNFPLYSHSL-KSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVES  103 (433)
Q Consensus        26 g~~y~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~  103 (433)
                      ...|.+..+.|++ ++++|++..+..++.....++..+ .++.|++.||+|+|+++.++.++..++..........    
T Consensus       264 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~----  339 (490)
T PRK10642        264 VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS----  339 (490)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence            4567777788885 567899988777766666666654 7889999999999999988887544433222211111    


Q ss_pred             hhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCC-chhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 013969          104 LPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLS-RGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVP  181 (433)
Q Consensus       104 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~  181 (433)
                      .+...+++..++.|++.+.........+.+.||++ ||+++|+......+++.+.+.+...+.+. +.+....+...++.
T Consensus       340 ~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~  419 (490)
T PRK10642        340 NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVA  419 (490)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence            12344444444555444433344445667899965 99999975444445566666666665542 22222222333455


Q ss_pred             HHHHHHHhhcccCCCC
Q 013969          182 AVCLVMMYFVRPCTPA  197 (433)
Q Consensus       182 ~v~l~~~~~~r~~~~~  197 (433)
                      +++++..+++++.|.+
T Consensus       420 ~i~~~~~~~~pes~~~  435 (490)
T PRK10642        420 VIGLITGVTMKETANR  435 (490)
T ss_pred             HHHHHHHHHhccccCC
Confidence            5566666666655544

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.06  E-value=2.2e-08  Score=101.39  Aligned_cols=75  Identities=11%  Similarity=-0.034  Sum_probs=54.6

Q ss_pred             cHHHHhhhhhHHHHHHHHHhhcccceeeecchhhHHHhhcCCcc--chhHHHHH-HhHHHHhhhcccchHHHHHhhhc
Q 013969          343 KFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDT--TILLSLFS-FCNFVGRLGGGVVSEHFVRLVQS  417 (433)
Q Consensus       343 t~~~~l~t~~Fwll~~~~~~~~g~g~~~i~n~~~i~~s~G~~~~--~~~vsl~s-i~n~~GRl~~G~lsD~~~~~~~~  417 (433)
                      +.++.+|+|.+|.+....++.......+.....+..++.|+++.  ....++.+ +...+|.++.|++.||+++++..
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l  277 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTF  277 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            45788999999987776666554444444556677888888865  34555555 47778999999999999988653

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.02  E-value=5.9e-08  Score=102.86  Aligned_cols=156  Identities=12%  Similarity=0.060  Sum_probs=103.0

Q ss_pred             hccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHH
Q 013969           32 PLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLW  110 (433)
Q Consensus        32 s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~  110 (433)
                      +...+.+-+++|=+ ....|+.+...++.. ..++.|+|+|.||||...++|.++..+|....+.       ..+.-.+.
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at-------A~~~~~~i  135 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT-------AQNMNTFI  135 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc-------CCcHHHHH
Confidence            33445677778765 566777777777775 4899999999999999999999999999986543       12455666


Q ss_pred             HHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHH-HHhc-CChhHHHHHHHHHHHHHHHHH
Q 013969          111 IALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYN-MLLH-NSSSKLLLVLAVGVPAVCLVM  187 (433)
Q Consensus       111 ~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~-~~~~-~~~~~~l~~~a~~~~~v~l~~  187 (433)
                      ....+.|+|.|..... ...+++..|+ +|+.+.++....+ +-....++... .+.. .+|++-+.+.++...+..++.
T Consensus       136 ag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~-i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~  213 (599)
T PF06609_consen  136 AGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPF-IITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLI  213 (599)
T ss_pred             HHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHH-HhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHH
Confidence            6777788887765543 3447888895 4988877655443 22222234444 3333 356655555555555555566


Q ss_pred             HhhcccCCCC
Q 013969          188 MYFVRPCTPA  197 (433)
Q Consensus       188 ~~~~r~~~~~  197 (433)
                      .++.+++++.
T Consensus       214 ~~fY~PP~~~  223 (599)
T PF06609_consen  214 FFFYFPPPRA  223 (599)
T ss_pred             HHHhCCCchh
Confidence            6777776543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.02  E-value=1.9e-08  Score=106.20  Aligned_cols=140  Identities=16%  Similarity=0.153  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhh
Q 013969           48 QLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTA  126 (433)
Q Consensus        48 ~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~  126 (433)
                      +.+++.+...++..+ +++.|++.|++|||++++++.+++.+|.++.+.+       .+++++.+.+++.|+|.|.....
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-------~~~~~l~~GR~l~G~g~G~~~~~  162 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-------PSWYQLIVGRILTGLGVGGASVL  162 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHhccchhhhhhc
Confidence            457888888888864 9999999999999999999999999999987663       35788888999999999988777


Q ss_pred             HHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHHHHHHHhhcccCC
Q 013969          127 VLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLHNS--SSKLLLVLAVGVPAVCLVMMYFVRPCT  195 (433)
Q Consensus       127 ~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~--~~~~l~~~a~~~~~v~l~~~~~~r~~~  195 (433)
                      ....+.+.=|+ .||.-.++......+|. +...+.....+..  .|++++.++.++.++..++.+++++-|
T Consensus       163 ~piy~sEiap~~~RG~l~~~~~l~~~~Gi-~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp  233 (513)
T KOG0254|consen  163 APVYISEIAPAHIRGTLVSLYQLFITIGI-LLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESP  233 (513)
T ss_pred             chhhHhhcCChhhhHHHHHHHHHHHHHHH-HHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            77788888886 59999999988887555 4445555555543  566788888888777777755555433

>TIGR00897 2A0118 polyol permease family

Probab=99.01  E-value=1.7e-08  Score=102.85  Aligned_cols=163  Identities=14%  Similarity=0.139  Sum_probs=103.7

Q ss_pred             hhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHH-HHHHHHHHHHHHHHHHHhcccCc
Q 013969           26 GNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLF-IGSLACFFGYGVLWLAVSRTVES  103 (433)
Q Consensus        26 g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~-ig~~l~~~g~~~~~~~~~~~~~~  103 (433)
                      ...|.+..+.|.+.+++|++..+.+.+.....++.. ..++.|++.||+|+|+... .+.+..+++...+.......  .
T Consensus       236 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--~  313 (402)
T TIGR00897       236 IGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF--G  313 (402)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc--C
Confidence            345666778888878899999998876665556664 4889999999999988764 33333333333222211111  1


Q ss_pred             hhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHH
Q 013969          104 LPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPA  182 (433)
Q Consensus       104 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~  182 (433)
                      .+++...++.++.|++.+.. .+....+.+.+|++||++.|+......+|+.+.+.+...+++. ++...+.+.++ ..+
T Consensus       314 ~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~-~~~  391 (402)
T TIGR00897       314 HSFAVALIIAIALGIFLAGY-VPLAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAA-LYV  391 (402)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH-HHH
Confidence            12444444555566655443 3344556677888999999999999999998888888877764 33333333333 344


Q ss_pred             HHHHHHhhcc
Q 013969          183 VCLVMMYFVR  192 (433)
Q Consensus       183 v~l~~~~~~r  192 (433)
                      +..+..+|+|
T Consensus       392 i~~~~~~~~~  401 (402)
T TIGR00897       392 VSAFLTAFIR  401 (402)
T ss_pred             HHHHHHHHhc
Confidence            4455555555

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.01  E-value=3.7e-08  Score=96.89  Aligned_cols=239  Identities=16%  Similarity=0.070  Sum_probs=172.5

Q ss_pred             hhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHh-hccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCch
Q 013969           26 GNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESL  104 (433)
Q Consensus        26 g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~  104 (433)
                      -..-+.+...+++++++|.|.++++++++.-.+.. .++|++.++..|+|.++.+..+.++.++|..+=..        .
T Consensus        26 ~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~--------~   97 (395)
T COG2807          26 PAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL--------G   97 (395)
T ss_pred             hhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--------c
Confidence            35677888889999999999999999998887777 46999999999999999999999999999884322        1


Q ss_pred             hHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhc--CChhHHHHHHHHHHHH
Q 013969          105 PYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLH--NSSSKLLLVLAVGVPA  182 (433)
Q Consensus       105 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~--~~~~~~l~~~a~~~~~  182 (433)
                      +.+.++.--++.|.|.+..+.-....+-|+||||-|..+|+..+..++|+++.+-+...+-.  .+|+..+.+.++.+++
T Consensus        98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~all  177 (395)
T COG2807          98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALL  177 (395)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHH
Confidence            24556666677888888777766788899999999999999999988888877544443321  1233333222221110


Q ss_pred             HHHHHHhhcccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhhhhhhhhhhh
Q 013969          183 VCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIMIILLMAPLAIPVKMTI  262 (433)
Q Consensus       183 v~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~  262 (433)
                                                                                          .+..-+|-    
T Consensus       178 --------------------------------------------------------------------Al~~WlPq----  185 (395)
T COG2807         178 --------------------------------------------------------------------ALLIWLPQ----  185 (395)
T ss_pred             --------------------------------------------------------------------HHHHHhhh----
Confidence                                                                                00000110    


Q ss_pred             hccccCcccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHhhcccccccccCCCCCCCCC
Q 013969          263 CRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGEGAVRRKKRRPKRGEDF  342 (433)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (433)
                         ..++                       ..+    +            .+                  .  +    ..
T Consensus       186 ---~~r~-----------------------~~~----~------------~~------------------~--~----~~  199 (395)
T COG2807         186 ---ALRE-----------------------QAA----S------------IA------------------T--K----LV  199 (395)
T ss_pred             ---cccc-----------------------ccc----c------------cc------------------c--c----cc
Confidence               0000                       000    0            00                  0  0    01


Q ss_pred             cHHHHhhhhhHHHHHHHHHhhcccceeeecchhhHHHhhcCCcc--chhHHHHHHhHHHHhhhcccchHH
Q 013969          343 KFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQGVHDT--TILLSLFSFCNFVGRLGGGVVSEH  410 (433)
Q Consensus       343 t~~~~l~t~~Fwll~~~~~~~~g~g~~~i~n~~~i~~s~G~~~~--~~~vsl~si~n~~GRl~~G~lsD~  410 (433)
                      +.....|+|.=|.+-+-+.+.+.....++.=+.+|..++|++..  ..++++..+.....-+..-++.+|
T Consensus       200 ~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R  269 (395)
T COG2807         200 SVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARR  269 (395)
T ss_pred             cccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            22357789999999888888899999999999999999999875  579999999999999999988777

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.00  E-value=9.6e-09  Score=105.79  Aligned_cols=167  Identities=11%  Similarity=0.041  Sum_probs=92.2

Q ss_pred             hhhhhhccHHHH-HHHhCCCHHHHHHHHHHHHHHh-hccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCch
Q 013969           27 NAYNFPLYSHSL-KSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESL  104 (433)
Q Consensus        27 ~~y~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~  104 (433)
                      ..|.+..+.|++ ++++|++..+.+...+...+.. ..+++.|++.||+|+|+++.++.++.++....+.......  . 
T Consensus       258 ~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~--~-  334 (432)
T PRK10406        258 CFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNV--S-  334 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcC--C-
Confidence            456666777774 6778999988887555444444 4578889999999999988887765544333222111111  1 


Q ss_pred             hHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHH
Q 013969          105 PYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPA  182 (433)
Q Consensus       105 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~  182 (433)
                      +.+....+..+.+.+.+...........++||+ +||++.|+......+.....+|+...+++. +.+...++...+..+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~  414 (432)
T PRK10406        335 SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAV  414 (432)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            122221222222222222222334567899995 599999997654333211224454445532 222333334444555


Q ss_pred             HHHHHHhhcccCCC
Q 013969          183 VCLVMMYFVRPCTP  196 (433)
Q Consensus       183 v~l~~~~~~r~~~~  196 (433)
                      ++++..++++++++
T Consensus       415 i~~~~~~~l~~~~~  428 (432)
T PRK10406        415 VAFLVSLMLHRKGK  428 (432)
T ss_pred             HHHHHHHHhhhccc
Confidence            55666666655433

>PRK09669 putative symporter YagG; Provisional

Probab=99.00  E-value=2.2e-08  Score=103.46  Aligned_cols=120  Identities=5%  Similarity=-0.045  Sum_probs=77.6

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccc----cCchHH-HHHHHHHHHHHHHHHHHHHhcccCchhHHHHHH
Q 013969           38 LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNK----FPPWLV-LFIGSLACFFGYGVLWLAVSRTVESLPYWLLWI  111 (433)
Q Consensus        38 l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr----~G~r~~-~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~  111 (433)
                      +.+++|+|.++++.+.+...+.-. ..|+.|+++||    +|+||. ++.|.+..++...+.+.. ........++.+++
T Consensus        36 ~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~-p~~~~~~~~~~~~~  114 (444)
T PRK09669         36 YTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYT-PDFGATGKIIYACV  114 (444)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhC-CCCCcchHHHHHHH
Confidence            688999999999998777766664 59999999999    777554 556777777766544331 11100112344444


Q ss_pred             HHHHHHhchhhhhhhHHHHHhhccc--CCchhHHHHHHhhhhhHHHHHH
Q 013969          112 ALCVATNSSAWLGTAVLVTNMRNFP--LSRGTVAGILKGYGGLSAAVFT  158 (433)
Q Consensus       112 ~~~l~g~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~~  158 (433)
                      ..++.+.+.+....+......++.+  ++|++..+.-..+..+|+.+.+
T Consensus       115 ~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~  163 (444)
T PRK09669        115 TYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVS  163 (444)
T ss_pred             HHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444556666677788875  5588887776666556655543

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.99  E-value=1.9e-08  Score=100.56  Aligned_cols=147  Identities=15%  Similarity=0.143  Sum_probs=98.1

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 013969           38 LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVA  116 (433)
Q Consensus        38 l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  116 (433)
                      +++++|.+..+.+.+......... ..++.|++.||+|+|+++.++.+...+.+..+..  .     ++.+.+.+..++.
T Consensus       226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~  298 (375)
T TIGR00899       226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA--D-----NSLWALLMLQLLN  298 (375)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHH
Confidence            567899999998886554444443 4788999999999999998887765555543322  1     1345555555666


Q ss_pred             HhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHhhcc
Q 013969          117 TNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVCLVMMYFVR  192 (433)
Q Consensus       117 g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~l~~~~~~r  192 (433)
                      |++.+..+........+.+|++|+++.|+......+|..+.+.+...+.+. +++..+.+.++ ..+++.+...++|
T Consensus       299 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~  374 (375)
T TIGR00899       299 AIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIV-MLIVALFCLLLIK  374 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH-HHHHHHHHHheec
Confidence            766666665556677888998889999998888778888887777766653 33333333333 3344444444443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.97  E-value=1.9e-08  Score=102.22  Aligned_cols=157  Identities=18%  Similarity=0.129  Sum_probs=106.9

Q ss_pred             hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhH
Q 013969           28 AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPY  106 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~  106 (433)
                      .|....+.|.+.++.|++..+.+.+.....++.. ..++.|++.||+|+|+.+.++.+...+++..+..  .     ++.
T Consensus       236 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~--~-----~~~  308 (406)
T PRK11551        236 LYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA--A-----PSF  308 (406)
T ss_pred             HHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--c-----CcH
Confidence            4455556778777789999999987766666665 4899999999999999998876666666554322  1     123


Q ss_pred             HHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHH
Q 013969          107 WLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVC  184 (433)
Q Consensus       107 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~  184 (433)
                      +.+.+..++.|++.+..+........+.+|+ +||++.|+.....++|+++.+.+...+.+. .....++.......+++
T Consensus       309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~  388 (406)
T PRK11551        309 AGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVA  388 (406)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHH
Confidence            4444445555655544555556778899984 599999999999999999888888877764 23333333444444444


Q ss_pred             HHHHhhc
Q 013969          185 LVMMYFV  191 (433)
Q Consensus       185 l~~~~~~  191 (433)
                      ++..+++
T Consensus       389 ~~~~~~~  395 (406)
T PRK11551        389 ALAALLL  395 (406)
T ss_pred             HHHHHHH
Confidence            4444433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.95  E-value=2.7e-08  Score=101.66  Aligned_cols=160  Identities=15%  Similarity=0.154  Sum_probs=112.9

Q ss_pred             hhccHHHH-HHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHH
Q 013969           31 FPLYSHSL-KSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWL  108 (433)
Q Consensus        31 ~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~  108 (433)
                      +..+.|.+ ++.+|.+..+.+++.....++.. ..++.|++.||.++++.+.++.++.++++..+..       .++.+.
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~  314 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL-------MPMWIL  314 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc-------cchHHH
Confidence            34455665 44499999999987776667765 4788999999998888888888877777664432       123444


Q ss_pred             HHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHH
Q 013969          109 LWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVCLV  186 (433)
Q Consensus       109 l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~l~  186 (433)
                      +.+..++.|++.+.........+.+.+|+ +||++.|+......+|.++.+.+...+.+. +....+...+++.++++++
T Consensus       315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  394 (417)
T PRK10489        315 AVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVL  394 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence            45555666776665554556678899995 599999999888888888888888877753 4455566666666666666


Q ss_pred             HHhhcccCCCC
Q 013969          187 MMYFVRPCTPA  197 (433)
Q Consensus       187 ~~~~~r~~~~~  197 (433)
                      ....+++.+..
T Consensus       395 ~~~~~~~~~~~  405 (417)
T PRK10489        395 LLLVLGELRRF  405 (417)
T ss_pred             HHHhccccccc
Confidence            66666655443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.93  E-value=2.3e-08  Score=102.78  Aligned_cols=123  Identities=11%  Similarity=0.069  Sum_probs=83.6

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHh-hcccccccccc----ccCchHHHH-HHHHHHHHHHHHHHHHHh-cccCchhHHH
Q 013969           36 HSLKSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASN----KFPPWLVLF-IGSLACFFGYGVLWLAVS-RTVESLPYWL  108 (433)
Q Consensus        36 ~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~D----r~G~r~~~~-ig~~l~~~g~~~~~~~~~-~~~~~~~~~~  108 (433)
                      +.+.+.+|+++..++++....-+.- ...|+.|.++|    |+||||..+ +|.+..++++.+++.... +.........
T Consensus        26 ~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~  105 (428)
T PF13347_consen   26 YFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVW  105 (428)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHH
Confidence            3468889999999999776665555 45999999999    899877655 677888888887664311 1110111223


Q ss_pred             HHHHHHHHHhchhhhhhhHHHHHhhccc--CCchhHHHHHHhhhhhHHHHHH
Q 013969          109 LWIALCVATNSSAWLGTAVLVTNMRNFP--LSRGTVAGILKGYGGLSAAVFT  158 (433)
Q Consensus       109 l~~~~~l~g~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~~  158 (433)
                      +++..++..++..+...+......+..+  ++|.+..+.-..+..+|..+.+
T Consensus       106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~  157 (428)
T PF13347_consen  106 LFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLAS  157 (428)
T ss_pred             HHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHH
Confidence            3344444566677777777778888886  4599988887776666664443

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.93  E-value=1.8e-08  Score=103.15  Aligned_cols=148  Identities=12%  Similarity=0.007  Sum_probs=106.7

Q ss_pred             hCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhch
Q 013969           42 LGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSS  120 (433)
Q Consensus        42 ~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~  120 (433)
                      .+.+..+.+.+.+...+... ..++.|++.||+|+|+.+.++.++.++++.++.+.       .+++.+.+...+.|++.
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-------~~~~~~~~~~~l~g~~~  329 (420)
T PRK09528        257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-------TGPLEVSILKLLHAFEV  329 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHH
Confidence            46777778887666656554 48899999999999999999999888877765431       23566666667777776


Q ss_pred             hhhhhhHHHHHhhcccCC-chhHHHH-HHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 013969          121 AWLGTAVLVTNMRNFPLS-RGTVAGI-LKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVCLVMMYFVRPCTP  196 (433)
Q Consensus       121 g~~~~~~~~~~~~~Fp~~-RG~a~gi-~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~l~~~~~~r~~~~  196 (433)
                      +.........+.+++|++ |+++.+. .....++|+++.+++...+.+. +++..+...+++.++..++...++|++++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~~  408 (420)
T PRK09528        330 PFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDRE  408 (420)
T ss_pred             HHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence            666666667788899855 8877655 3455678888888888877764 55666666677776667777777777544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.92  E-value=6.4e-08  Score=96.94  Aligned_cols=138  Identities=14%  Similarity=0.151  Sum_probs=97.6

Q ss_pred             hhhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           28 AYNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        28 ~y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      .+.+..+.|. +++++|+++.+.+.+.....++.. ..++.|++.||+|+|+.+.++.++..++...+.......  ...
T Consensus       222 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  299 (385)
T TIGR00710       222 FFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILG--LGS  299 (385)
T ss_pred             HHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc--cch
Confidence            4444455555 466899999999987766666665 489999999999999999999888877766654422111  112


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcCC
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNS  168 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~  168 (433)
                      .+.+.....+.|+|.+..+........+.+|++||++.++.......++.+.+++.. ....+
T Consensus       300 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~  361 (385)
T TIGR00710       300 WAMIIGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVS-LIHGN  361 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHH-hcccc
Confidence            333334455677777777777777778888988999999987776666777777766 44333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.92  E-value=1.1e-11  Score=127.93  Aligned_cols=106  Identities=18%  Similarity=0.195  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhh
Q 013969           48 QLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTA  126 (433)
Q Consensus        48 ~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~  126 (433)
                      +.++..+...++..+ +++.|.+.||+|||+++.++.++..+|.++..+....    .+++.+.+.+++.|+|.|..+..
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~R~~~G~~~g~~~~~  122 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY----NNFWMLLIGRFLIGFGIGGAYVV  122 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccc
Confidence            456677777788865 8999999999999999999999999988865442100    14677888899999999988888


Q ss_pred             HHHHHhhccc-CCchhHHHHHHhhhhhHHHHH
Q 013969          127 VLVTNMRNFP-LSRGTVAGILKGYGGLSAAVF  157 (433)
Q Consensus       127 ~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~  157 (433)
                      ....+.|.-| ++||+...+...+..+|..+.
T Consensus       123 ~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~  154 (451)
T PF00083_consen  123 SPIYISEIAPPKHRGFLSSLFQLFWALGILLA  154 (451)
T ss_pred             cccccccccccccccccccccccccccccccc
Confidence            8888889887 569999999888887776554

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.91  E-value=2.5e-08  Score=108.94  Aligned_cols=128  Identities=13%  Similarity=0.095  Sum_probs=85.1

Q ss_pred             HHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhc
Q 013969           56 NDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRN  134 (433)
Q Consensus        56 ~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~  134 (433)
                      ..++.+ ..+++|++.||+|||++++++.++.+++.+++.+. .      +.+.+.+..++.|...+..+......++++
T Consensus       604 ~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~-~------s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       604 GTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG-N------SESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-c------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444 47999999999999999999999888887765542 1      123333334445544444555666788999


Q ss_pred             ccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhc
Q 013969          135 FPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFV  191 (433)
Q Consensus       135 Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~l~~~a~~~~~v~l~~~~~~  191 (433)
                      ||+ .||+++|+..+...+|+++.+.+...++.......+++.+++.+ ++.+...++
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~ll-l~~ll~~~L  733 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALA-CGGLLALKL  733 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHhC
Confidence            995 59999999999989999998877776665433333333344333 333333344

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.90  E-value=4.2e-08  Score=96.17  Aligned_cols=145  Identities=27%  Similarity=0.325  Sum_probs=111.2

Q ss_pred             hhhhhccHHHHHH-HhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchH-HHHHHHHHHHHHHHHHHHHHhcccCch
Q 013969           28 AYNFPLYSHSLKS-VLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWL-VLFIGSLACFFGYGVLWLAVSRTVESL  104 (433)
Q Consensus        28 ~y~~s~~~~~l~~-~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~-~~~ig~~l~~~g~~~~~~~~~~~~~~~  104 (433)
                      .+.+..+.|.+.+ .+|++..+.+.+.....++.. ..++.|++.||+|+|+ .+.++.++..+++..+...       .
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~  263 (352)
T cd06174         191 YYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-------P  263 (352)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-------c
Confidence            4455556666544 459999999998777777775 4899999999999999 9999999988888766542       1


Q ss_pred             hHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHH
Q 013969          105 PYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVG  179 (433)
Q Consensus       105 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~  179 (433)
                      +.+.+.+..++.|.+.+..+......+.+.+| ++||++.|+......+|..+.+.+...+.+. ++...+.+.+++
T Consensus       264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~  340 (352)
T cd06174         264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAAL  340 (352)
T ss_pred             cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHH
Confidence            24566667777888888778788888999999 6699999999999999999988888888754 344444444443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.89  E-value=5e-08  Score=101.51  Aligned_cols=134  Identities=14%  Similarity=0.026  Sum_probs=85.9

Q ss_pred             hhhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           28 AYNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        28 ~y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      .+.+..+.|. +++++|+|..+.++......++.. ..+++|++.||+|+|+.+.++..+..++...+.... .    .+
T Consensus       274 ~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~-~----~~  348 (467)
T PRK09556        274 RIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQH-A----TS  348 (467)
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHh-c----Cc
Confidence            4455667776 567899999999887776666665 489999999999999887766554444332221111 1    12


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhh-HHHHHHHHHHHHhc
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGL-SAAVFTEIYNMLLH  166 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~gl-g~~i~~~l~~~~~~  166 (433)
                      .+.+++..++.|...............+++|+ +||++.|+..+...+ |+++.+++...+.+
T Consensus       349 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        349 EYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            34443444444432211111112445689995 599999999877665 66777777777766

>PRK03545 putative arabinose transporter; Provisional

Probab=98.89  E-value=6.7e-08  Score=97.90  Aligned_cols=151  Identities=15%  Similarity=0.073  Sum_probs=98.4

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHH
Q 013969           37 SLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCV  115 (433)
Q Consensus        37 ~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l  115 (433)
                      .+++++|+|..+.+.+.....++.. ..++.|++.||+|+|+. .++..+..++...+.. ..     .+.+.++++.++
T Consensus       231 ~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~-~~-----~~~~~~~~~~~l  303 (390)
T PRK03545        231 FVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLP-AA-----NSEWHLSVLSIF  303 (390)
T ss_pred             HHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHH-Hh-----chHHHHHHHHHH
Confidence            3577789999998887666656654 48889999999997764 4555555554443322 11     134555555566


Q ss_pred             HHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHhhcccC
Q 013969          116 ATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVCLVMMYFVRPC  194 (433)
Q Consensus       116 ~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~l~~~~~~r~~  194 (433)
                      .|++.+.........+.+..|++||.+.|+..+...+|..+.+.+...+.+. +.+..+...+++.++..+......|+.
T Consensus       304 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (390)
T PRK03545        304 WGIAIMCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFRRF  383 (390)
T ss_pred             HHHHHhcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcccc
Confidence            6666544333344556677888899999998888888888887777777764 445555555555555555555555544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.88  E-value=5.5e-08  Score=98.59  Aligned_cols=154  Identities=17%  Similarity=0.240  Sum_probs=100.4

Q ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHH
Q 013969           33 LYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWI  111 (433)
Q Consensus        33 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~  111 (433)
                      .+.+.+.++.|++.  .+.......++.. ..++.|++.||+|+|+.+.++.++.++++..+...       ++.+.+.+
T Consensus       237 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  307 (399)
T PRK05122        237 TFITLYYAARGWDG--AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-------PSPWMALI  307 (399)
T ss_pred             HHHHHHHHHccccc--chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHH
Confidence            34455444556643  3443333344444 46889999999999999999888888877655431       12444555


Q ss_pred             HHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHh
Q 013969          112 ALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVCLVMMY  189 (433)
Q Consensus       112 ~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~l~~~~  189 (433)
                      ..++.|++.+..+........+.+| ++||++.|+......+|..+.+++...+.+. +++..+.+.+++ .+++++...
T Consensus       308 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~-~~~~~~~~~  386 (399)
T PRK05122        308 GAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALA-ALLGLALTW  386 (399)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH-HHHHHHHHH
Confidence            6677888777666555566778888 5699999999988889988888887766653 444444444443 344455555


Q ss_pred             hcccCCC
Q 013969          190 FVRPCTP  196 (433)
Q Consensus       190 ~~r~~~~  196 (433)
                      ++++.++
T Consensus       387 ~~~~~~~  393 (399)
T PRK05122        387 LLYRRAP  393 (399)
T ss_pred             Hhccccc
Confidence            5554433

>PRK09952 shikimate transporter; Provisional

Probab=98.88  E-value=1.1e-07  Score=98.33  Aligned_cols=164  Identities=11%  Similarity=0.098  Sum_probs=98.3

Q ss_pred             hhhhhhccHHHH-HHHhCCCHHHHHHHHHHHHHHh-hccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCch
Q 013969           27 NAYNFPLYSHSL-KSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESL  104 (433)
Q Consensus        27 ~~y~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~  104 (433)
                      ..|.+..+.|.+ ++++|++..+...+.....+.. ...++.|++.||+|+|+++.++.++..++...+......   ..
T Consensus       265 ~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~---~~  341 (438)
T PRK09952        265 TMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA---QS  341 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc---CC
Confidence            355555566664 6778999876655443333333 347889999999999999988877665554433332211   11


Q ss_pred             hHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhh-hhhHHHHHHHHHHHHhc--CChhHHHHHHHHHH
Q 013969          105 PYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGY-GGLSAAVFTEIYNMLLH--NSSSKLLLVLAVGV  180 (433)
Q Consensus       105 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~-~glg~~i~~~l~~~~~~--~~~~~~l~~~a~~~  180 (433)
                      ..+.+.+..++.+++.+.........+.+.||+ +|+++.|+.... ..+|+.+.+.+...+.+  ++.+........++
T Consensus       342 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~  421 (438)
T PRK09952        342 IFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAG  421 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            233333344455566655555556778899995 599998885433 34677777777766665  22223333334444


Q ss_pred             HHHHHHHHhhccc
Q 013969          181 PAVCLVMMYFVRP  193 (433)
Q Consensus       181 ~~v~l~~~~~~r~  193 (433)
                      .+++.++.+.+|+
T Consensus       422 ~~i~~v~~~~~~~  434 (438)
T PRK09952        422 CLISAMTALLMKD  434 (438)
T ss_pred             HHHHHHHHHHccc
Confidence            4555555555543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.88  E-value=4.2e-08  Score=82.87  Aligned_cols=117  Identities=20%  Similarity=0.194  Sum_probs=86.5

Q ss_pred             HHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc
Q 013969           58 IGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP  136 (433)
Q Consensus        58 ~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp  136 (433)
                      ++.. ..++.|++.||+|+|+.+.++.++..++.+.+...       .+++.+.+..++.|++.+..+......+.+.+|
T Consensus         9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------SNITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            3443 48899999999999999999998888877755431       235666667778888887777777788899998


Q ss_pred             C-CchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 013969          137 L-SRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVP  181 (433)
Q Consensus       137 ~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~  181 (433)
                      + +|+++.++......+|..+.+.+...+.+. +++..+...+.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL  128 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHH
Confidence            5 599999999999889998887777766653 33333444444333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.86  E-value=4.2e-08  Score=97.34  Aligned_cols=129  Identities=12%  Similarity=-0.015  Sum_probs=92.2

Q ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHH
Q 013969           34 YSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIA  112 (433)
Q Consensus        34 ~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~  112 (433)
                      +.+++.+++|++..+.+.+.+...++.. ..++.|++.||+|+|+.+.++.+...++++.+... ..    .+.+.++..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~  301 (377)
T TIGR00890       227 LYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI-PM----LNDVLFLAT  301 (377)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc-cc----chhHHHHHH
Confidence            4455667789999888887766666665 48999999999999999999988888887755432 11    112222233


Q ss_pred             HHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhcC
Q 013969          113 LCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLHN  167 (433)
Q Consensus       113 ~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  167 (433)
                      .++.|.+.+..+......+.+.+| ++||++.|+......+|.++.+.+...+.+.
T Consensus       302 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~  357 (377)
T TIGR00890       302 VALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE  357 (377)
T ss_pred             HHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344555555444444567788998 5699999999999899998888877776653

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.86  E-value=1.8e-07  Score=95.29  Aligned_cols=166  Identities=14%  Similarity=0.066  Sum_probs=107.3

Q ss_pred             hhhhhccHHHH-HHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           28 AYNFPLYSHSL-KSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        28 ~y~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      .+.+..+.|.+ ++++|++..+.++......++.. ..++.|++.||+|+|+.+.++.++..++...+.......  ..+
T Consensus       231 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~  308 (406)
T PRK15402        231 LLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVIS--SHA  308 (406)
T ss_pred             HHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcc--ccc
Confidence            34444455654 67799999998876555545554 478899999999999999999888887777665432111  112


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH-
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVC-  184 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~l~~~a~~~~~v~-  184 (433)
                      ++.+.+..++.|+|.+..+..........-|++||++.++......+|..+.+.+...+++...+......+++..++. 
T Consensus       309 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~  388 (406)
T PRK15402        309 YLWLTAGLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWL  388 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHH
Confidence            4444455566777776655444444444446789999999988888888888888887776433333333344333333 


Q ss_pred             HHHHhhcccCC
Q 013969          185 LVMMYFVRPCT  195 (433)
Q Consensus       185 l~~~~~~r~~~  195 (433)
                      +....++|+.+
T Consensus       389 ~~~~~~~~~~~  399 (406)
T PRK15402        389 LLVRIFLKDKP  399 (406)
T ss_pred             HHHHHHhccCC
Confidence            34445555543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.85  E-value=1.4e-07  Score=95.45  Aligned_cols=143  Identities=12%  Similarity=0.102  Sum_probs=105.8

Q ss_pred             hhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHH
Q 013969           30 NFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWL  108 (433)
Q Consensus        30 ~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~  108 (433)
                      .+..+.|.+.+++|++..+++.......+... ..++.|++.||+|+|+++.++.+...+.+..+...       ++.|.
T Consensus       223 ~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-------~~~~~  295 (382)
T TIGR00902       223 AYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-------EAFPL  295 (382)
T ss_pred             HHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-------hhHHH
Confidence            33345566556799999999986666656654 48889999999999999999999999998866441       24677


Q ss_pred             HHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHH-hhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 013969          109 LWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILK-GYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGV  180 (433)
Q Consensus       109 l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~-~~~glg~~i~~~l~~~~~~~~~~~~l~~~a~~~  180 (433)
                      +++..++-|+..+..+.+....+.+. | ++|+++.++.. ...|+|.++.+.+...+.+......++..+++.
T Consensus       296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~  368 (382)
T TIGR00902       296 IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIA  368 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            77777888888888888888888887 7 46999999875 467888888887777776543233333444433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.82  E-value=5.6e-08  Score=99.51  Aligned_cols=165  Identities=14%  Similarity=0.147  Sum_probs=103.9

Q ss_pred             hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHh-hccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCc---
Q 013969           28 AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVES---  103 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~---  103 (433)
                      .+....+.|.+.+++|++..+.+.......++. ...+++|++.||+|+|+.+.++.++.+++.+.+..........   
T Consensus       300 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (481)
T TIGR00879       300 INAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSK  379 (481)
T ss_pred             CeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence            344456677788889999977777666555555 4588899999999999999999888877776655321111110   


Q ss_pred             -hhHHHHHH-HHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHH
Q 013969          104 -LPYWLLWI-ALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVG  179 (433)
Q Consensus       104 -~~~~~l~~-~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~  179 (433)
                       .+...+.. ..+..+.+.+. .......+.+.+|+ +||++.|+......+|+++.+.+...+.+. ++...+.+.+++
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~  458 (481)
T TIGR00879       380 SSGNVAIVFILLFIAFFAMGW-GPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGL  458 (481)
T ss_pred             chhHHHHHHHHHHHHHHHccc-cCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHH
Confidence             01222222 21222222221 12223455889985 699999999999999999988888877653 444444455555


Q ss_pred             HHHHHHHHHhhccc
Q 013969          180 VPAVCLVMMYFVRP  193 (433)
Q Consensus       180 ~~~v~l~~~~~~r~  193 (433)
                      +++.+++..++.++
T Consensus       459 ~~~~~i~~~~~~~~  472 (481)
T TIGR00879       459 NVLGLIFVYFFLPE  472 (481)
T ss_pred             HHHHHHHHheeccc
Confidence            55555544444444

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.82  E-value=1.3e-07  Score=99.26  Aligned_cols=156  Identities=12%  Similarity=0.133  Sum_probs=97.5

Q ss_pred             HHHHHHHhCCCHHHHHHHH-HHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHH
Q 013969           35 SHSLKSVLGFNQHQLTMLG-VANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIA  112 (433)
Q Consensus        35 ~~~l~~~~g~s~~~~~~i~-~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~  112 (433)
                      .|.+.+++|+|.++.+.+. ....++.. ..+++|++.||+|+|+.+.++.++.+++.+.++.....   ..+.+.+...
T Consensus       246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~---~~~~~~l~~~  322 (491)
T PRK11010        246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT---DKNLYSMGAA  322 (491)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHH
Confidence            3445678999999999875 45555654 48999999999999998887777666554443321111   1123333322


Q ss_pred             HHHHHhchhhhhhhHHHHHhhcccCC-chhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHhh
Q 013969          113 LCVATNSSAWLGTAVLVTNMRNFPLS-RGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVCLVMMYF  190 (433)
Q Consensus       113 ~~l~g~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~l~~~~~  190 (433)
                      .++..+..++.+.+......+..|++ +++..|+..+..++|..+.+++...+.+. ++...+.+ ..+..+.+++...+
T Consensus       323 ~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~-~~~~~l~~l~~~~~  401 (491)
T PRK11010        323 VFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLF-SVAAAVPGLLLLLV  401 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHH
Confidence            33322222333344456667777754 89999999988899998888887777663 34443433 44444455555555


Q ss_pred             cccC
Q 013969          191 VRPC  194 (433)
Q Consensus       191 ~r~~  194 (433)
                      +|+.
T Consensus       402 ~~~~  405 (491)
T PRK11010        402 CRQT  405 (491)
T ss_pred             HHhc
Confidence            5543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.81  E-value=1.3e-07  Score=97.80  Aligned_cols=167  Identities=15%  Similarity=0.132  Sum_probs=97.8

Q ss_pred             hhhhhhhhccHHHH-HHHhCCCHHHHHHHHHHHHH-HhhccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccC
Q 013969           25 AGNAYNFPLYSHSL-KSVLGFNQHQLTMLGVANDI-GENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVE  102 (433)
Q Consensus        25 ~g~~y~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~-~~~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~  102 (433)
                      .|..-.++.+.|.+ ++++  +............+ +....|++|+|+||+|+|+++.++.+...++.+.+....... +
T Consensus       265 FG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~-~  341 (462)
T PRK15034        265 FGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGT-G  341 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccc-c
Confidence            34444566566665 4433  44333222233223 345689999999999999999999987777665444333221 1


Q ss_pred             chhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC----------------------CchhHHHHHHhhhhhHHHHHHHH
Q 013969          103 SLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL----------------------SRGTVAGILKGYGGLSAAVFTEI  160 (433)
Q Consensus       103 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~----------------------~RG~a~gi~~~~~glg~~i~~~l  160 (433)
                      +.+++......+...+..|+.+.+..+.+.+.||+                      +-|.+.|++.+.-++|+.+.|.+
T Consensus       342 ~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~  421 (462)
T PRK15034        342 SGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQA  421 (462)
T ss_pred             ccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHH
Confidence            12344333322222233444455566888899985                      45789999988888999888888


Q ss_pred             HHHHhc--CChhHHHHHHHHHHHHHHHHHH-hhcccC
Q 013969          161 YNMLLH--NSSSKLLLVLAVGVPAVCLVMM-YFVRPC  194 (433)
Q Consensus       161 ~~~~~~--~~~~~~l~~~a~~~~~v~l~~~-~~~r~~  194 (433)
                      +.....  +.....+....+..+++.++.+ .+.|+.
T Consensus       422 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r~~  458 (462)
T PRK15034        422 FGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGRRK  458 (462)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            777664  3343334434444444444444 444443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.81  E-value=5.4e-08  Score=97.19  Aligned_cols=137  Identities=16%  Similarity=0.058  Sum_probs=91.1

Q ss_pred             hhhhhhhccHHHH-HHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHH-HHHHHHHhcccC
Q 013969           26 GNAYNFPLYSHSL-KSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGY-GVLWLAVSRTVE  102 (433)
Q Consensus        26 g~~y~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~-~~~~~~~~~~~~  102 (433)
                      ...+.+..+.|.+ ++++|++..+.+.+.....++.. ..++.|++.||+|+|+.+.++..+..+.. ..+.. ...   
T Consensus       233 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~~~---  308 (394)
T TIGR00883       233 TTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA-LLD---  308 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-Hhc---
Confidence            3455666667775 57889999998886666666664 48899999999999998876655444332 22221 111   


Q ss_pred             chhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHH-HhhhhhHHHHHHHHHHHHhc
Q 013969          103 SLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGIL-KGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       103 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~-~~~~glg~~i~~~l~~~~~~  166 (433)
                      ..+.+.+.+..++.|++.+..+.+....+.+.+|+ +|+++.|+. ..+..+|+.+.+.+...+.+
T Consensus       309 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~  374 (394)
T TIGR00883       309 SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA  374 (394)
T ss_pred             CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence            11344444555666666666777778888999995 599998884 33344666676666666654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.79  E-value=1.7e-07  Score=92.31  Aligned_cols=180  Identities=13%  Similarity=0.005  Sum_probs=123.7

Q ss_pred             CCCChHhHHHHHH-HHHHhhhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHH
Q 013969            8 SRPPWVGLGAAVW-VQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLA   85 (433)
Q Consensus         8 ~~~~w~~l~~~~l-~~~~~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l   85 (433)
                      .+.+|.....+.. .+.-.+-.-..+...|.+...+|.+..|..+++.....++.. +..+|.+.|++|+|+...+..+.
T Consensus        73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~  152 (528)
T KOG0253|consen   73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLV  152 (528)
T ss_pred             ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHH
Confidence            3445655444333 333445556667888999999999999999999999999965 89999999999999998888776


Q ss_pred             HHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969           86 CFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                      .++.-+     ..+.  ++++..+++++.+.|.|.|. +......-.+.-| .+|++-+-.. ..+..|.++-..+.-..
T Consensus       153 t~v~~~-----is~~--spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~v  223 (528)
T KOG0253|consen  153 TGVFGV-----ISGA--SPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGV  223 (528)
T ss_pred             HHHHHH-----hhcC--CCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHH
Confidence            665333     2332  46788888888888888876 4433444455557 5788876665 77777776555554444


Q ss_pred             hcCChhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 013969          165 LHNSSSKLLLVLAVGVPAVCLVMMYFVRPCTP  196 (433)
Q Consensus       165 ~~~~~~~~l~~~a~~~~~v~l~~~~~~r~~~~  196 (433)
                      .++..|+|+++...+|+.+.....+.+.+-|.
T Consensus       224 m~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpR  255 (528)
T KOG0253|consen  224 MSNFGWRYLLFTSSTPLMFAARFLVWVYESPR  255 (528)
T ss_pred             HHhhhHHHHHHHHHhHHHHHHHHHhhcccCcc
Confidence            45545556666555777666666666655444

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.78  E-value=2.2e-07  Score=97.05  Aligned_cols=120  Identities=13%  Similarity=0.058  Sum_probs=75.7

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHh-hcccccccccc----ccCc-hHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHH
Q 013969           37 SLKSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASN----KFPP-WLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLW  110 (433)
Q Consensus        37 ~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~D----r~G~-r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~  110 (433)
                      .+.+.+|++..+++.+....-+.- +..|+.|.++|    |+|+ |+.+++|.+..++++.+++.. .+......++.++
T Consensus        32 yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~-p~~~~~~~~~~~~  110 (473)
T PRK10429         32 YYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA-HLFEGTAQYVFVC  110 (473)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC-CCCCccHHHHHHH
Confidence            368889999999999766665555 45999999999    6699 556667888877776655431 1110111133333


Q ss_pred             HHHHHHHhchhhhhhhHHHHHhhccc--CCchhHHHHHHhhhhhHHHHH
Q 013969          111 IALCVATNSSAWLGTAVLVTNMRNFP--LSRGTVAGILKGYGGLSAAVF  157 (433)
Q Consensus       111 ~~~~l~g~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~  157 (433)
                      +..++.+++..+...+......+.-+  ++|.+..+.-..+..+|+.+.
T Consensus       111 ~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~  159 (473)
T PRK10429        111 VTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVT  159 (473)
T ss_pred             HHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555566666666666667663  568888887555445555444

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.77  E-value=7.5e-08  Score=101.60  Aligned_cols=137  Identities=13%  Similarity=0.060  Sum_probs=106.3

Q ss_pred             HHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHh
Q 013969           40 SVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATN  118 (433)
Q Consensus        40 ~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~  118 (433)
                      +.+..+.....+..+...+|..+ .++.|.++||+|||++++++.++..++-+..++       +++++.+++++++.|+
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~-------a~~~~~~~~~Rfl~G~  183 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF-------APNYWMFLIFRFLSGF  183 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH-------hCcHHHHHHHHHHHHh
Confidence            55666777777888888888865 889999999999999999999999887764444       2468899999999999


Q ss_pred             chhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 013969          119 SSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCL  185 (433)
Q Consensus       119 g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~l~~~a~~~~~v~l  185 (433)
                      +.+..+......++++++ ++|+.+..+ ...+-.++.+.+++...+.+ +|+++.....+...+..+
T Consensus       184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~  249 (521)
T KOG0255|consen  184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLL  249 (521)
T ss_pred             hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH
Confidence            998888888999999996 669999999 55555666666666666665 666666665555443333

>PRK03699 putative transporter; Provisional

Probab=98.77  E-value=1.5e-07  Score=95.70  Aligned_cols=150  Identities=9%  Similarity=-0.038  Sum_probs=99.8

Q ss_pred             hhhhhhccHHHH-HHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCch
Q 013969           27 NAYNFPLYSHSL-KSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESL  104 (433)
Q Consensus        27 ~~y~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~  104 (433)
                      ..+.+..+.|.+ ++++|+|..+.+.+.+...++.. ..++.|++.||+|+|+++..+..+..+++..+..  ..     
T Consensus       220 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~--~~-----  292 (394)
T PRK03699        220 AQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVN--TD-----  292 (394)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH--cC-----
Confidence            345666677775 57789999999887666556654 4788999999999999988877766665543322  11     


Q ss_pred             hHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHH
Q 013969          105 PYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAV  183 (433)
Q Consensus       105 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v  183 (433)
                      +.+.+.+..++.|++.+..+........+..|+++++..|.......+|+.+.+.+...+.+. +....+...+++.+++
T Consensus       293 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~  372 (394)
T PRK03699        293 DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVV  372 (394)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHH
Confidence            223333344455655555555555555666687788888888888889998888888777653 4444444444443333

>PRK12382 putative transporter; Provisional

Probab=98.76  E-value=1.6e-07  Score=95.08  Aligned_cols=154  Identities=18%  Similarity=0.193  Sum_probs=102.8

Q ss_pred             hhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHH
Q 013969           30 NFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWL  108 (433)
Q Consensus        30 ~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~  108 (433)
                      ....+.+.+.++.+++..  +.......++.. ..++.|++.||+|+|+.+.++.++.+++++.+...       ++.+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  304 (392)
T PRK12382        234 VIGTFVSLYFASKGWAMA--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-------PTAWV  304 (392)
T ss_pred             HHHHHHHHHHHhcCCchh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-------ccHHH
Confidence            334455555556677653  333333334443 47899999999999999999998888887754431       12445


Q ss_pred             HHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHH
Q 013969          109 LWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVCLV  186 (433)
Q Consensus       109 l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~l~  186 (433)
                      +.+..++.|++.+..+......+.+.+| ++||++.|+..+...+|.++.+++...+.+. ++...+.+.+++.++..++
T Consensus       305 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  384 (392)
T PRK12382        305 ALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIV  384 (392)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            5556667777777666655666788887 6699999999998889999988888877763 4555555555544444433


Q ss_pred             HHhhcc
Q 013969          187 MMYFVR  192 (433)
Q Consensus       187 ~~~~~r  192 (433)
                      ...+.|
T Consensus       385 ~~~~~~  390 (392)
T PRK12382        385 TILSFR  390 (392)
T ss_pred             HHhhcc
Confidence            333333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.74  E-value=6.8e-07  Score=89.60  Aligned_cols=158  Identities=12%  Similarity=0.155  Sum_probs=91.5

Q ss_pred             hhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhH
Q 013969           29 YNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPY  106 (433)
Q Consensus        29 y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~  106 (433)
                      +.+..+.|. +.+++|++..+.+.+.....++.. ..++.|++.||+|+|+++.++.++..+....+......   ..++
T Consensus       211 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  287 (377)
T PRK11102        211 FSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL---DLGF  287 (377)
T ss_pred             HHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH---hhhH
Confidence            333334444 567789999999987666666664 48999999999999999998887654432222211111   1124


Q ss_pred             HHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhh-hhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 013969          107 WLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGY-GGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCL  185 (433)
Q Consensus       107 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~-~glg~~i~~~l~~~~~~~~~~~~l~~~a~~~~~v~l  185 (433)
                      +.+.+...+.+.+.+..+......+.+..|++||.+.++.... +++|+.+.+.+ ......+.+.++...++ +.++++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~~~~~~-~~~~~~  365 (377)
T PRK11102        288 WALVVGVAAFVGCVSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALL-SLAPFTSAWPMVWSMAF-CSILSI  365 (377)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHH-HhccCCChHHHHHHHHH-HHHHHH
Confidence            4433333333333444444455666777898899999987553 45666554433 33333344444444443 333444


Q ss_pred             HHHhhc
Q 013969          186 VMMYFV  191 (433)
Q Consensus       186 ~~~~~~  191 (433)
                      +..++.
T Consensus       366 ~~~~~~  371 (377)
T PRK11102        366 LFYLYA  371 (377)
T ss_pred             HHHHHh
Confidence            444443

>PRK15075 citrate-proton symporter; Provisional

Probab=98.72  E-value=3.7e-07  Score=94.07  Aligned_cols=136  Identities=14%  Similarity=0.127  Sum_probs=81.9

Q ss_pred             hhhhhhccHHHH-HHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHH-HHHHHHHHHhcccCc
Q 013969           27 NAYNFPLYSHSL-KSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFF-GYGVLWLAVSRTVES  103 (433)
Q Consensus        27 ~~y~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~-g~~~~~~~~~~~~~~  103 (433)
                      ..+....+.|.+ ++.+|++..+.+++.....++.. ..++.|++.||+|+|++..++.+...+ ++..+......    
T Consensus       253 ~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~----  328 (434)
T PRK15075        253 SFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAA----  328 (434)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC----
Confidence            355666677875 55689999988877666666654 488899999999999998877654433 22221111111    


Q ss_pred             hhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHh-hhhhHHHHHHHHHHHHhc
Q 013969          104 LPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKG-YGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       104 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~-~~glg~~i~~~l~~~~~~  166 (433)
                      +++..+.+...+.+++.+...........+.+|+ .||++.|+... +..+++.+.+.+...+.+
T Consensus       329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~  393 (434)
T PRK15075        329 PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH  393 (434)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence            1222222222233334443333344567889985 59999998543 333446566666655544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.71  E-value=2.7e-07  Score=95.75  Aligned_cols=129  Identities=16%  Similarity=0.100  Sum_probs=85.3

Q ss_pred             hhccHHHHHHHhCCCHHHHHHHHHHHHHHh-hccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHH
Q 013969           31 FPLYSHSLKSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLL  109 (433)
Q Consensus        31 ~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l  109 (433)
                      ...|.|.+.++.|++..+..+......+.. ...+++|++.||+|+|+++.++.++.+++++.+.......  ..+.+.+
T Consensus       290 ~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~--~~~~~~~  367 (479)
T PRK10077        290 VLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ--APGIVAL  367 (479)
T ss_pred             HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC--cccHHHH
Confidence            345667787889998776666544444444 3478999999999999999999999998887765433221  1112221


Q ss_pred             HHHHHHHHhchhhhh-hhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHH
Q 013969          110 WIALCVATNSSAWLG-TAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYN  162 (433)
Q Consensus       110 ~~~~~l~g~g~g~~~-~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~  162 (433)
                       ...++.+.+.+..+ +.....+.+.||+ +||++.|+..+...+|+.+.+.++.
T Consensus       368 -~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p  421 (479)
T PRK10077        368 -LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFP  421 (479)
T ss_pred             -HHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence             12222333333222 2335778899994 5999999988887788877665554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.70  E-value=2.4e-07  Score=97.30  Aligned_cols=134  Identities=19%  Similarity=0.175  Sum_probs=102.9

Q ss_pred             hhhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           28 AYNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        28 ~y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      .+.+..+.|. +++.+|+|..+.+.......++.. ..++.|++.||+|+|+++..|.++.++++..+... ..   ..+
T Consensus       275 ~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~-~~---~~~  350 (495)
T PRK14995        275 LVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT-DF---STQ  350 (495)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh-cC---CCc
Confidence            3444445555 577899999999997776667765 58999999999999999999998888887765542 11   123


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      .+..+.+.++.|+|.+..+.+....+.+..| +++|.+.++......+|+++.+.+...++
T Consensus       351 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        351 QWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566778888888887777788888888 56999999999888899988877776655

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.68  E-value=5.7e-07  Score=91.93  Aligned_cols=136  Identities=20%  Similarity=0.157  Sum_probs=86.0

Q ss_pred             hhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCch
Q 013969           26 GNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESL  104 (433)
Q Consensus        26 g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~  104 (433)
                      +..+.+..+.|.+.++.|++..+.+.+.+...++.. ..++.|++.||+|+|+...++.++..++.+.+... ..    .
T Consensus       245 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~----~  319 (426)
T PRK12307        245 GANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI-PQ----D  319 (426)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-cc----c
Confidence            334445556677666789999888876666556664 48899999999999999998888776665543321 11    1


Q ss_pred             hHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          105 PYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       105 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      +.+.+.++.+..+.+...........+.+.||+ +||++.|+......+|+.+.+.+...+.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~  382 (426)
T PRK12307        320 NYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI  382 (426)
T ss_pred             cHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence            122221111111111111112223556899995 59999999888888888777766666554

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.68  E-value=1.2e-06  Score=88.56  Aligned_cols=124  Identities=12%  Similarity=0.008  Sum_probs=85.9

Q ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHH
Q 013969           34 YSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIA  112 (433)
Q Consensus        34 ~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~  112 (433)
                      +.|.+.++.|.+.++.+.+.....++.. ..++.|++.||+|+|+++.++.++..++...+.   ..    ..+   ...
T Consensus       222 ~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~----~~~---~~~  291 (381)
T PRK03633        222 LMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---SQ----AAM---APA  291 (381)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---hh----HHH---HHH
Confidence            4566666789999998886665556654 488899999999999999888888777665332   11    111   112


Q ss_pred             HHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhcC
Q 013969          113 LCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLHN  167 (433)
Q Consensus       113 ~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  167 (433)
                      ..+.|.+....++.....+.+..|+ +++.+.+.....+++|+++.+.+...+.+.
T Consensus       292 ~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~  347 (381)
T PRK03633        292 LFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN  347 (381)
T ss_pred             HHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2333444444455566667888885 577777777777889999988888877654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.67  E-value=2.5e-07  Score=96.09  Aligned_cols=135  Identities=13%  Similarity=0.148  Sum_probs=101.8

Q ss_pred             hhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhH
Q 013969           29 YNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPY  106 (433)
Q Consensus        29 y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~  106 (433)
                      +....+.|. +++.+|++..+.+++.....++.. ..++.|++.||+|+|+++.+|.++.++++..+......   ..++
T Consensus       272 ~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~  348 (485)
T TIGR00711       272 YGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTP---DTPF  348 (485)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCC---CCCH
Confidence            333445555 466789999999987776667665 58999999999999999999998888887765421211   1235


Q ss_pred             HHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          107 WLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       107 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      +.+....++.|+|.+..+.+......+.+| ++||.+.|+......+|+++.+.+...++.
T Consensus       349 ~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       349 LAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555677888888777677777778888 569999999999988999998888777653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.67  E-value=4.4e-07  Score=94.73  Aligned_cols=131  Identities=12%  Similarity=0.114  Sum_probs=87.5

Q ss_pred             hhccHHHH-HHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHH
Q 013969           31 FPLYSHSL-KSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWL  108 (433)
Q Consensus        31 ~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~  108 (433)
                      ...+.|.+ ++++|++..+.+.+.+...++.. ..++.|++.||+|+|+++.++.++..++.+.+.. ..    ..+.+.
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~  368 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFA-IG----GANVWV  368 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh-cc----ccHHHH
Confidence            34566775 46899999999997777777765 4899999999999999998887766655543322 11    122333


Q ss_pred             HHHHHHHH-HhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhcC
Q 013969          109 LWIALCVA-TNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLHN  167 (433)
Q Consensus       109 l~~~~~l~-g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  167 (433)
                      +.+..++. +.+.+. .......+.+.+| ++||++.|+..+...+|+.+.+.+...+.+.
T Consensus       369 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~  428 (496)
T PRK03893        369 LGLLLFFQQMLGQGI-SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR  428 (496)
T ss_pred             HHHHHHHHHHHhccc-chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc
Confidence            33322222 222221 2233456788898 4699999998888889888877766666553

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.67  E-value=1.2e-06  Score=88.28  Aligned_cols=160  Identities=14%  Similarity=0.070  Sum_probs=112.5

Q ss_pred             hhhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 013969           25 AGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVES  103 (433)
Q Consensus        25 ~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~  103 (433)
                      .|..-.|+...|.+++..|+|.++++++.....++..+ ..++|++.|| ++|+.+....++..+.++.+.+.  .    
T Consensus       225 ~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~--~----  297 (394)
T COG2814         225 TGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFT--G----  297 (394)
T ss_pred             cchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHh--c----
Confidence            45455566677889999999999999988777788755 8999999999 99999999988888887766553  1    


Q ss_pred             hhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 013969          104 LPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAV  183 (433)
Q Consensus       104 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~l~~~a~~~~~v  183 (433)
                      .+.+......++.|+..+..-..-..-.++..|+.++.+.++..+.+++|-++.+.+....++.....+....+.+..++
T Consensus       298 ~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~  377 (394)
T COG2814         298 ASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLL  377 (394)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence            12344444444455444433333345556656799999999999999999999888888888764444444444444444


Q ss_pred             HHHHHhhc
Q 013969          184 CLVMMYFV  191 (433)
Q Consensus       184 ~l~~~~~~  191 (433)
                      +++..+..
T Consensus       378 a~~~~~~~  385 (394)
T COG2814         378 ALLLALLS  385 (394)
T ss_pred             HHHHHHHH
Confidence            44444333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.66  E-value=1.2e-06  Score=89.13  Aligned_cols=132  Identities=12%  Similarity=0.089  Sum_probs=91.6

Q ss_pred             hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           27 NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        27 ~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      ..+....+.|++.+++|++..+.+...+...++.. ..++.|++.||+|+|+...++..+..+++..+.. ...     +
T Consensus       220 ~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~-~~~-----~  293 (393)
T PRK09705        220 GYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW-LPL-----Q  293 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH-ccc-----h
Confidence            34455567777656689999999987776667765 4889999999999999999988877777665432 111     1


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhccc--CCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFP--LSRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      ...+.  ..+.|++.+..+........+.++  ++||++.|+......+++.+.+.+...+.+
T Consensus       294 ~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~  354 (393)
T PRK09705        294 LPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRS  354 (393)
T ss_pred             HHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11121  233455665555555555566664  359999999888877888777777777665

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.66  E-value=4.1e-07  Score=91.20  Aligned_cols=162  Identities=16%  Similarity=0.144  Sum_probs=111.0

Q ss_pred             HHhhhhhhhhccHHH-HHHHhCCCHHHHHHHHHHH-HHHhhccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcc
Q 013969           23 IAAGNAYNFPLYSHS-LKSVLGFNQHQLTMLGVAN-DIGENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRT  100 (433)
Q Consensus        23 ~~~g~~y~~s~~~~~-l~~~~g~s~~~~~~i~~~~-~~~~~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~  100 (433)
                      .+.|..-.++.+.|. ++++|+.+..+.+.+.... .++...=|.+|+|+||+|.||++.+..+.+.++...........
T Consensus       229 ~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~  308 (417)
T COG2223         229 ATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGF  308 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccc
Confidence            345666667777777 5999999999998865544 44456689999999999999999999998888777665532221


Q ss_pred             cCchhHHH----HHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcC--ChhHHHH
Q 013969          101 VESLPYWL----LWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHN--SSSKLLL  174 (433)
Q Consensus       101 ~~~~~~~~----l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~--~~~~~l~  174 (433)
                      ....+.+.    +....+..|+|+|..|    +.+...||++-|.+.|++.+.-++|+...+.......+.  +....+.
T Consensus       309 ~~~~~~~~~~~~~l~l~~~~G~GnGsvf----k~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~  384 (417)
T COG2223         309 GHGGSFVVFVAVFLALFVFAGLGNGSVF----KMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFM  384 (417)
T ss_pred             ccCcchHHHHHHHHHHHHHhccCcchhe----eechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHH
Confidence            10011222    2224555667776554    789999999999999999999999997777777666642  3444444


Q ss_pred             HHHHHHHHHHHHHH
Q 013969          175 VLAVGVPAVCLVMM  188 (433)
Q Consensus       175 ~~a~~~~~v~l~~~  188 (433)
                      +.....++..+...
T Consensus       385 ~~~~~~~~a~v~~~  398 (417)
T COG2223         385 LLLAFYLVALVLTW  398 (417)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444444333

>PRK11043 putative transporter; Provisional

Probab=98.65  E-value=1.8e-06  Score=87.65  Aligned_cols=138  Identities=16%  Similarity=0.130  Sum_probs=92.4

Q ss_pred             hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           27 NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        27 ~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      ..+.+..+.|.+.+++|++..+.++......++.. .+.+.+++.||+|+|+....+.+..+++...+.......  .+.
T Consensus       218 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  295 (401)
T PRK11043        218 AFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS--HPS  295 (401)
T ss_pred             HHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc--cCc
Confidence            34455556677777799999999886555445554 377889999999999987777666665544433321111  112


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      ++.+.+...+.|.+.+..+........+.+|++||++.|+..+....++.+.+++...+.+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        296 LVPLLIPFCVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            3434444455666677677666666677789999999999988766677777777766655

>PRK10504 putative transporter; Provisional

Probab=98.65  E-value=8.5e-07  Score=92.08  Aligned_cols=129  Identities=16%  Similarity=0.117  Sum_probs=92.4

Q ss_pred             ccHHHH-HHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHH
Q 013969           33 LYSHSL-KSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLW  110 (433)
Q Consensus        33 ~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~  110 (433)
                      .+.|.+ +..+|.+..+.++......++... .++.|++.||+|+|+++.++.++.+++..++.... .   ..+.+.+.
T Consensus       282 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~  357 (471)
T PRK10504        282 FMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA-L---LGWYYLLP  357 (471)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc-c---cccHHHHH
Confidence            344444 556899999998876666666544 68899999999999999999998888766554321 1   11233333


Q ss_pred             HHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          111 IALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       111 ~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      +..++.|++.+..+.+......+.+|+ .||.+.|+......+|.++.+.+...++
T Consensus       358 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll  413 (471)
T PRK10504        358 FVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLL  413 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556667777777777778888985 5999999988888888877777666555

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.65  E-value=3.3e-07  Score=92.19  Aligned_cols=128  Identities=18%  Similarity=0.108  Sum_probs=86.7

Q ss_pred             ccHHH-HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHH
Q 013969           33 LYSHS-LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLW  110 (433)
Q Consensus        33 ~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~  110 (433)
                      .+.|. +++++|++..+.+.+.....++.. ..++.|++.||+|+|+.+.++.+...+....... . .    .+.+.+.
T Consensus       259 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~-~----~~~~~~~  332 (405)
T TIGR00891       259 DLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFA-I-G----ANVAVLG  332 (405)
T ss_pred             hhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHH-h-C----CchHHHH
Confidence            34444 567899999999987766666665 4899999999999999998887765443322211 1 1    1233333


Q ss_pred             HHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          111 IALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       111 ~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      +..++.+...+..+......+.+.+| ++||++.|+......+|+.+.+++...+.+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~  389 (405)
T TIGR00891       333 LGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ  389 (405)
T ss_pred             HHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33233333232233344566788998 469999999988888999888888877765

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.64  E-value=7.4e-07  Score=88.59  Aligned_cols=149  Identities=13%  Similarity=0.038  Sum_probs=89.7

Q ss_pred             hhhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHH-HHHHHHHHHHHHH--HHHhcccC
Q 013969           28 AYNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFI-GSLACFFGYGVLW--LAVSRTVE  102 (433)
Q Consensus        28 ~y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~i-g~~l~~~g~~~~~--~~~~~~~~  102 (433)
                      .+.+..+.|. +++++|++..+.+.+.....++.. ..++.|++.||+|+|+.... ......++.+...  ......  
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  308 (399)
T TIGR00893       231 LGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY--  308 (399)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc--
Confidence            3444445555 467789999999887766666664 58999999999999961111 1111111111111  001111  


Q ss_pred             chhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhcC-C-hhHHHHHHHHH
Q 013969          103 SLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLHN-S-SSKLLLVLAVG  179 (433)
Q Consensus       103 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~-~~~~l~~~a~~  179 (433)
                      ....+.......+.+.+.+ .+........+.+|+ +||++.|+.....++|+.+.+.+...+.+. + +...+.+.+++
T Consensus       309 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~  387 (399)
T TIGR00893       309 VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAAL  387 (399)
T ss_pred             chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHH
Confidence            1123333333333444444 455667788999985 599999999999899999988888877764 3 44444444443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.64  E-value=2.3e-06  Score=86.55  Aligned_cols=126  Identities=14%  Similarity=0.071  Sum_probs=79.1

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 013969           36 HSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALC  114 (433)
Q Consensus        36 ~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~  114 (433)
                      |.+++.+|++..+.+++.+...++.. ..++.|++.||+|+|+.+.++.++.+++++.+... ..     +.+...+..+
T Consensus       224 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~-~~-----~~~~~~~~~~  297 (382)
T PRK10091        224 PYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF-GG-----MKTASLIFAF  297 (382)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHH-Hh-----hHHHHHHHHH
Confidence            34566789999999987776666665 48999999999999999999988888877654331 11     1233333333


Q ss_pred             HHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcC
Q 013969          115 VATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHN  167 (433)
Q Consensus       115 l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  167 (433)
                      +.+.|......+......+..+++|..+.+.......+|.++.+.+...+++.
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~~  350 (382)
T PRK10091        298 ICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMMLTL  350 (382)
T ss_pred             HHHHHHHhhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHhHHHHHc
Confidence            34444332333333334444433333333333455678998888888877763

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.63  E-value=1.6e-06  Score=87.76  Aligned_cols=128  Identities=10%  Similarity=0.041  Sum_probs=92.5

Q ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHH
Q 013969           33 LYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWI  111 (433)
Q Consensus        33 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~  111 (433)
                      .+.|.+.++.|++..+.+.+.....++.. ..++.|++.||+|+|+++.++.+..+++++.+...       .++|.+.+
T Consensus       226 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~  298 (382)
T PRK11128        226 GFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-------TALPWLIV  298 (382)
T ss_pred             HHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHH
Confidence            34455556789999999886666656554 47899999999999999999998888877654331       23566666


Q ss_pred             HHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHH-hhhhhHHHHHHHHHHHHhcC
Q 013969          112 ALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILK-GYGGLSAAVFTEIYNMLLHN  167 (433)
Q Consensus       112 ~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~-~~~glg~~i~~~l~~~~~~~  167 (433)
                      ..++.|++.+..+......+.+.-|++++++.++.. ...++|.++.+.+...+.+.
T Consensus       299 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~  355 (382)
T PRK11128        299 IQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH  355 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777778777776666666677775677899888875 44556666777666666654

>PRK09848 glucuronide transporter; Provisional

Probab=98.62  E-value=1.3e-06  Score=90.39  Aligned_cols=119  Identities=8%  Similarity=0.008  Sum_probs=69.1

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHhh-cccccccccccc----CchHHH-HHHHHHHHHHHHHHHHHHhcccCchhHHH
Q 013969           35 SHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKF----PPWLVL-FIGSLACFFGYGVLWLAVSRTVESLPYWL  108 (433)
Q Consensus        35 ~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~----G~r~~~-~ig~~l~~~g~~~~~~~~~~~~~~~~~~~  108 (433)
                      ...+++.+|++..+++.+.+...+... ..|+.|+++||.    |+||.. .++.+...+...+++............+.
T Consensus        32 ~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (448)
T PRK09848         32 LSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY  111 (448)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence            345788899999999998777777765 599999999996    667754 66666555544433221111111112223


Q ss_pred             HHHHHHHHHhchhhhhhhHHHHHhhcc--cCCchhHHHHHHhhhhhH
Q 013969          109 LWIALCVATNSSAWLGTAVLVTNMRNF--PLSRGTVAGILKGYGGLS  153 (433)
Q Consensus       109 l~~~~~l~g~g~g~~~~~~~~~~~~~F--p~~RG~a~gi~~~~~glg  153 (433)
                      .+....+.+++.++...+......+.-  |++|.+..+.-..+..++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~  158 (448)
T PRK09848        112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLT  158 (448)
T ss_pred             HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence            333334556666666555444434333  345877766544333333

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.62  E-value=2.1e-06  Score=89.45  Aligned_cols=183  Identities=10%  Similarity=0.039  Sum_probs=108.0

Q ss_pred             ChHhHHHHHHHHHHhhhhhhhhc---cHHHHHHHhCCCHHHHHHHHHHHHHHh-hcccccccccc----ccCchHHHHHH
Q 013969           11 PWVGLGAAVWVQIAAGNAYNFPL---YSHSLKSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASN----KFPPWLVLFIG   82 (433)
Q Consensus        11 ~w~~l~~~~l~~~~~g~~y~~s~---~~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~D----r~G~r~~~~ig   82 (433)
                      +|.++..+...   .|..+.|++   +.+++.+++|.++.+.+.+.....+.. ...|+.|+++|    |+||||..+++
T Consensus         3 ~~~li~~~~~~---~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~   79 (477)
T TIGR01301         3 LRKLLRVASVA---AGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAA   79 (477)
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHH
Confidence            45554444332   333444443   334467889999999999776666665 56999999999    59999998875


Q ss_pred             -HHHHHHHHHHHHHHHhc------cc-CchhH---HHHHHHHHHHHhchhhhhhhHHHHHhhcccCC-c--hhHHHHHHh
Q 013969           83 -SLACFFGYGVLWLAVSR------TV-ESLPY---WLLWIALCVATNSSAWLGTAVLVTNMRNFPLS-R--GTVAGILKG  148 (433)
Q Consensus        83 -~~l~~~g~~~~~~~~~~------~~-~~~~~---~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~-R--G~a~gi~~~  148 (433)
                       .+...++++++...-.-      .. .....   +...+...+..++......+.-..+.+.+|++ |  +.+.++...
T Consensus        80 g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~  159 (477)
T TIGR01301        80 GAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSF  159 (477)
T ss_pred             HHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH
Confidence             55555565655431100      00 00001   11122222334456666777788899999843 3  688998888


Q ss_pred             hhhhHHHHHHHHHHHH-----hc-----------CChhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 013969          149 YGGLSAAVFTEIYNML-----LH-----------NSSSKLLLVLAVGVPAVCLVMMYFVRPCTP  196 (433)
Q Consensus       149 ~~glg~~i~~~l~~~~-----~~-----------~~~~~~l~~~a~~~~~v~l~~~~~~r~~~~  196 (433)
                      ..++|+.+...+....     ++           .+.+..+.+.+++.++..++..+++|+.|+
T Consensus       160 ~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~  223 (477)
T TIGR01301       160 FMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL  223 (477)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence            8888887776554321     11           022333444444444455566677787654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.61  E-value=1.5e-06  Score=87.95  Aligned_cols=130  Identities=12%  Similarity=0.015  Sum_probs=84.5

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHH-HHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHH
Q 013969           36 HSLKSVLGFNQHQLTMLGVAND-IGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIAL  113 (433)
Q Consensus        36 ~~l~~~~g~s~~~~~~i~~~~~-~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~  113 (433)
                      +.+.++.|++.++++.+..... +.... .+++|++.||+|+|+++.++.++.+........ .......++.+.++...
T Consensus       232 ~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  310 (390)
T TIGR02718       232 KLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFA-QAAFWLAPGIAVAWSCS  310 (390)
T ss_pred             hHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHcccCCcHHHHHHHH
Confidence            4444568999999998655443 34444 678999999999999998887766443332221 11110011223333333


Q ss_pred             HHHHhchhhhhhhHHHHHhhccc--CCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          114 CVATNSSAWLGTAVLVTNMRNFP--LSRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       114 ~l~g~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      .+.+++.+..+.+......+..+  +++|++.++..+..++|..+.+.+...+.+
T Consensus       311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~  365 (390)
T TIGR02718       311 AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD  365 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555566667764  458999999999999999998888777765

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00895 2A0115 benzoate transport

Probab=98.60  E-value=6.1e-07  Score=89.82  Aligned_cols=130  Identities=18%  Similarity=0.136  Sum_probs=91.2

Q ss_pred             hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           27 NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        27 ~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      ..+....+.|.+.+++|++..+.+.+.....++.. ..++.|++.||+|+|+......+.....+.... . .     .+
T Consensus       265 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-----~~  337 (398)
T TIGR00895       265 GVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGS-T-L-----FS  337 (398)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-H-h-----hC
Confidence            34455566777888999999999887766666665 489999999999999554443333333333222 1 1     12


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHH
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNM  163 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~  163 (433)
                      .+.+++..++.|++.+..+......+.+.+|+ +||++.|+..+...+|.++.+.+...
T Consensus       338 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       338 PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            34445556667777777777778889999995 59999999988888888887666543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.60  E-value=3.5e-06  Score=88.97  Aligned_cols=125  Identities=15%  Similarity=0.103  Sum_probs=93.6

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 013969           38 LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVA  116 (433)
Q Consensus        38 l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  116 (433)
                      +..+..=|...++++..+..+-.. +++++|.++||+.+|++++.+-++.++....+.......  ..++|.++++.++.
T Consensus        36 lv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~--~~~~~~Ll~~~fl~  113 (524)
T PF05977_consen   36 LVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFG--LLSPWLLLILTFLL  113 (524)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhC--cCCHHHHHHHHHHH
Confidence            344555677888888888777775 599999999999999999999988776555544322221  23478888888899


Q ss_pred             HhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969          117 TNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus       117 g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                      |++.++..++-...+.+..|+ +...|.++....++++-.+.+.+...+
T Consensus       114 g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~L  162 (524)
T PF05977_consen  114 GIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGIL  162 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            988888777778888999995 578888888877777776665554433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.59  E-value=1.1e-06  Score=91.04  Aligned_cols=161  Identities=16%  Similarity=0.066  Sum_probs=86.5

Q ss_pred             hhhhhhhccHHHH-HHHhCCCHHHHHHHHHHHHHHhh-cccccccccccc--CchHHH-HHHHHHHHHHHHHHHHHHhcc
Q 013969           26 GNAYNFPLYSHSL-KSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKF--PPWLVL-FIGSLACFFGYGVLWLAVSRT  100 (433)
Q Consensus        26 g~~y~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~--G~r~~~-~ig~~l~~~g~~~~~~~~~~~  100 (433)
                      ...|.+..+.|.+ ++++|++..+.+.+.....++.. ..++.|++.||+  |+|+.. .....+..++...++.. .. 
T Consensus       267 ~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~-~~-  344 (452)
T PRK11273        267 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN-PA-  344 (452)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh-cc-
Confidence            3456666777885 66689999998886666656665 488999999999  555432 22223333343333221 11 


Q ss_pred             cCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHH-HHHHHHHhcC-ChhHHHHHHH
Q 013969          101 VESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVF-TEIYNMLLHN-SSSKLLLVLA  177 (433)
Q Consensus       101 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~-~~l~~~~~~~-~~~~~l~~~a  177 (433)
                         .+.+...+...+.|.+.............+.+|+ +||++.|+......+|+.+. +.+...+.+. ++...+...+
T Consensus       345 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~  421 (452)
T PRK11273        345 ---GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI  421 (452)
T ss_pred             ---cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHH
Confidence               1122222222222222111111112345688985 59999999877666777665 4555555543 3434444444


Q ss_pred             HHHHHHHHHHHhhcc
Q 013969          178 VGVPAVCLVMMYFVR  192 (433)
Q Consensus       178 ~~~~~v~l~~~~~~r  192 (433)
                      ++ .+++++....++
T Consensus       422 ~~-~~~~~~~~~~~~  435 (452)
T PRK11273        422 GG-SILAVILLIVVM  435 (452)
T ss_pred             HH-HHHHHHHHHHHh
Confidence            43 334444444333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.58  E-value=1.7e-06  Score=87.57  Aligned_cols=136  Identities=12%  Similarity=-0.011  Sum_probs=89.2

Q ss_pred             HHHHHHHHh-hccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHH
Q 013969           52 LGVANDIGE-NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVT  130 (433)
Q Consensus        52 i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~  130 (433)
                      +.....++. ...++.|++.||+|+|+++.++.+...++.+.+...       .+.+.+++..++.|++.+..+......
T Consensus       263 ~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~  335 (408)
T PRK09874        263 IASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-------QTPLQLGILRFLLGAADGALLPAVQTL  335 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence            333333444 347888999999999999999888777666543321       124555556667777777766666666


Q ss_pred             Hhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHhhcccC
Q 013969          131 NMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVCLVMMYFVRPC  194 (433)
Q Consensus       131 ~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~l~~~~~~r~~  194 (433)
                      +.+..| ++||++.|+......+|.++.+.+...+.+. +++..+...+++.++..+...+..|..
T Consensus       336 ~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~  401 (408)
T PRK09874        336 LVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRRR  401 (408)
T ss_pred             HHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            667777 5699999998888889988877776666653 444444455554444444444444433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.57  E-value=7.2e-07  Score=88.19  Aligned_cols=127  Identities=14%  Similarity=0.018  Sum_probs=95.2

Q ss_pred             ccHHHH-HHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHH
Q 013969           33 LYSHSL-KSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLW  110 (433)
Q Consensus        33 ~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~  110 (433)
                      .+.|.+ ++.+|++..+.+.+.....++.. ..++.|++.||+|+|+++.++.++.++++..+...  .   . +.+.+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~-~~~~~~  305 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT--P---P-NFPLFL  305 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh--c---h-hHHHHH
Confidence            345555 44589999999987776666665 48889999999999999988877777766644431  1   1 255556


Q ss_pred             HHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          111 IALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       111 ~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      +..++.|++.+..+......+.+.+|+ +||++.|+......++..+.+.+...+.
T Consensus       306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~  361 (365)
T TIGR00900       306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA  361 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666777888877777777888999985 5999999999988888888776666544

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.56  E-value=3.2e-06  Score=86.10  Aligned_cols=143  Identities=13%  Similarity=-0.026  Sum_probs=94.4

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHH-HHHHHHHHHhcccCchhHHHHHHH
Q 013969           35 SHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFF-GYGVLWLAVSRTVESLPYWLLWIA  112 (433)
Q Consensus        35 ~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~-g~~~~~~~~~~~~~~~~~~~l~~~  112 (433)
                      .|.+.+++|++..+.+.+.....++.. ..++.|++.||.+ |+...++.++..+ ++++...  .     .+.+.+.+.
T Consensus       240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~--~-----~~~~~~~~~  311 (394)
T PRK10213        240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLW--G-----SDKIVATGV  311 (394)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHH--h-----hhHHHHHHH
Confidence            355778899999998886666666664 4789999999965 4444444444333 3332221  1     124555566


Q ss_pred             HHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHH
Q 013969          113 LCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVCL  185 (433)
Q Consensus       113 ~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~l  185 (433)
                      .++.|++.+..+....+.+.+..|++++++.++..+...+|..+.+.+...+++. +....+.+.+++.++.++
T Consensus       312 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~  385 (394)
T PRK10213        312 AIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL  385 (394)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence            6677877777776667778888898888888888788888988888888888764 333334444443334433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.55  E-value=1.1e-06  Score=91.86  Aligned_cols=160  Identities=9%  Similarity=-0.054  Sum_probs=87.2

Q ss_pred             hhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchH-------HHHHHHHHHHHHHHHHHHHHhc
Q 013969           29 YNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWL-------VLFIGSLACFFGYGVLWLAVSR   99 (433)
Q Consensus        29 y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~-------~~~ig~~l~~~g~~~~~~~~~~   99 (433)
                      +.+..+.|. +.+++|++..+.+.+.+...++.. ..+++|++.||+|+|+       ...+..++.++..+.+.  .. 
T Consensus       269 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~--~~-  345 (476)
T PLN00028        269 LTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG--RA-  345 (476)
T ss_pred             HHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc--cc-
Confidence            333444555 467789999999887766666664 5899999999998762       22222222222222111  11 


Q ss_pred             ccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 013969          100 TVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVG  179 (433)
Q Consensus       100 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~l~~~a~~  179 (433)
                          .+.+...+..++.+.+.+..+........+..|++||++.|+...+..+|+.+.+.+...--..++...+.+. .+
T Consensus       346 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~-~~  420 (476)
T PLN00028        346 ----NSLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLM-GV  420 (476)
T ss_pred             ----chHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHH-HH
Confidence                1223322233333333332232223344455678899999998777778887776654311011233333333 33


Q ss_pred             HHHHHHHHHhhcccCCC
Q 013969          180 VPAVCLVMMYFVRPCTP  196 (433)
Q Consensus       180 ~~~v~l~~~~~~r~~~~  196 (433)
                      ..+++.+..+++|.+.+
T Consensus       421 ~~~i~~~~~~~~~~~~~  437 (476)
T PLN00028        421 MIIACTLPVAFIHFPQW  437 (476)
T ss_pred             HHHHHHHHHHheeccch
Confidence            44556666677764433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.55  E-value=1e-06  Score=92.58  Aligned_cols=136  Identities=15%  Similarity=0.128  Sum_probs=84.1

Q ss_pred             hhhhhhccHHHHHHHhCCCHHHHHH------------HHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHH
Q 013969           27 NAYNFPLYSHSLKSVLGFNQHQLTM------------LGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVL   93 (433)
Q Consensus        27 ~~y~~s~~~~~l~~~~g~s~~~~~~------------i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~   93 (433)
                      ..|....+.|.+.++.|++..+.+.            ......++.. ..++.|++.||+|||++++++.++.+++..++
T Consensus       303 ~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l  382 (502)
T TIGR00887       303 AFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVL  382 (502)
T ss_pred             HHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Confidence            4567777888887788887542211            1122222333 35778999999999999999888877766655


Q ss_pred             HHHHhcccCchhHHHHHH-HHHHHHhchhhhhhhHHHHHhhcccCC-chhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969           94 WLAVSRTVESLPYWLLWI-ALCVATNSSAWLGTAVLVTNMRNFPLS-RGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus        94 ~~~~~~~~~~~~~~~l~~-~~~l~g~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      ....... +......++. +....+.|.   .........+.||.+ |+++.|+..+...+++.+.+.+...+++
T Consensus       383 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~  453 (502)
T TIGR00887       383 GFAYNHL-STHGFLAIYVLAQFFANFGP---NATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQ  453 (502)
T ss_pred             HHHHHhc-chhHHHHHHHHHHHHHhcCC---CchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhc
Confidence            4432111 1111111111 111222222   112233458999965 9999999999888999888888877765

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11462 putative transporter; Provisional

Probab=98.55  E-value=5.5e-06  Score=86.29  Aligned_cols=120  Identities=8%  Similarity=-0.062  Sum_probs=77.1

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHh-hccccccccccc----cCchHHHH-HHHHHHHHHHHHHHHHHhcccCchhHHHHHH
Q 013969           38 LKSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASNK----FPPWLVLF-IGSLACFFGYGVLWLAVSRTVESLPYWLLWI  111 (433)
Q Consensus        38 l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr----~G~r~~~~-ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~  111 (433)
                      +.+..|++...++.+....-+.- +.-|+.|.++||    +|+||..+ +|.+.+++++++++.. .+......++.+++
T Consensus        36 yt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~-p~~s~~~~~~y~~~  114 (460)
T PRK11462         36 YTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST-PDLSMNGKMIYAAI  114 (460)
T ss_pred             HHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC-CCCCcchHHHHHHH
Confidence            57889999999998766665555 458999999996    79876655 5767887777665542 11111111223333


Q ss_pred             HHHHHHhchhhhhhhHHHHHhhccc--CCchhHHHHHHhhhhhHHHHHH
Q 013969          112 ALCVATNSSAWLGTAVLVTNMRNFP--LSRGTVAGILKGYGGLSAAVFT  158 (433)
Q Consensus       112 ~~~l~g~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~~  158 (433)
                      ...+..++..+...|-.....+.-+  ++|.+..+.-..+..+|+.+.+
T Consensus       115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~  163 (460)
T PRK11462        115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLST  163 (460)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555566666554  5699999987776666655543

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.53  E-value=2.9e-06  Score=87.50  Aligned_cols=161  Identities=14%  Similarity=0.133  Sum_probs=92.7

Q ss_pred             hhhhccHHHH-HHHhCCCHHHHHHHHHHHHHHhh-cccccccccccc--CchHHH-HHHHHHHHHHHHHHHHHHhcccCc
Q 013969           29 YNFPLYSHSL-KSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKF--PPWLVL-FIGSLACFFGYGVLWLAVSRTVES  103 (433)
Q Consensus        29 y~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~--G~r~~~-~ig~~l~~~g~~~~~~~~~~~~~~  103 (433)
                      +.+..+.|.+ ++++|++..+.+...+...++.. ..++.|++.||+  +.|+.. ....+...+....+.. ...    
T Consensus       260 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~----  334 (434)
T PRK11663        260 AAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL-MPF----  334 (434)
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH-ccc----
Confidence            3445566665 57789999999887666666665 489999999998  333332 2222222222222111 111    


Q ss_pred             hhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 013969          104 LPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVP  181 (433)
Q Consensus       104 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~  181 (433)
                      .+.+.+.+..+..|.+.............+.+| ++||+++|+......+|+++.+++...+.+. ++...+...+++.+
T Consensus       335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~  414 (434)
T PRK11663        335 ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAG  414 (434)
T ss_pred             ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHH
Confidence            112222222222232211111111234578897 5699999999999889999998888877763 45555566666555


Q ss_pred             HHHHHHHhhcccC
Q 013969          182 AVCLVMMYFVRPC  194 (433)
Q Consensus       182 ~v~l~~~~~~r~~  194 (433)
                      +.++....+.|..
T Consensus       415 ~~~~~~~~~~~~~  427 (434)
T PRK11663        415 ISALLLLPFLNAQ  427 (434)
T ss_pred             HHHHHHHHHHhhh
Confidence            5555555555554

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.52  E-value=1.8e-06  Score=89.75  Aligned_cols=130  Identities=10%  Similarity=-0.040  Sum_probs=90.1

Q ss_pred             hhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccc--cCchHHHHHHHHHH--HHHHHHHHHHHhcccCch
Q 013969           30 NFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNK--FPPWLVLFIGSLAC--FFGYGVLWLAVSRTVESL  104 (433)
Q Consensus        30 ~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr--~G~r~~~~ig~~l~--~~g~~~~~~~~~~~~~~~  104 (433)
                      ....+.+++.+++|++..+.+.+.+...++.. ..+++|++.||  +++|+...++..+.  +++++...  ..     .
T Consensus       259 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~--~~-----~  331 (455)
T TIGR00892       259 APIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA--LA-----G  331 (455)
T ss_pred             chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH--Hh-----c
Confidence            33345566666789999999987666666664 48999999998  44555444443333  33333221  11     2


Q ss_pred             hHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          105 PYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       105 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      +++.+.++.++.|++.+..+......+.+.+|+ +||++.|+..+..++|.++.+++...+.+
T Consensus       332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  394 (455)
T TIGR00892       332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD  394 (455)
T ss_pred             hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence            356666667777887777777777788888985 59999999999999999888877776664

>TIGR00901 2A0125 AmpG-related permease

Probab=98.51  E-value=1.6e-06  Score=86.38  Aligned_cols=123  Identities=10%  Similarity=0.108  Sum_probs=85.3

Q ss_pred             hhhhccHHHHHHHhCCCHHHHHHHHH-HHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcc----cC
Q 013969           29 YNFPLYSHSLKSVLGFNQHQLTMLGV-ANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRT----VE  102 (433)
Q Consensus        29 y~~s~~~~~l~~~~g~s~~~~~~i~~-~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~----~~  102 (433)
                      +....+.|.+.+++|++.++.+.+.. ...+... ..+++|++.||+|+|+.+.++.++.++++.++.....+.    .+
T Consensus       226 ~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (356)
T TIGR00901       226 SAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGIT  305 (356)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence            33334455554559999999987554 3434444 478899999999999999999988887776554421110    00


Q ss_pred             chhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhh
Q 013969          103 SLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGG  151 (433)
Q Consensus       103 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~g  151 (433)
                      .++.+.+....++.+++.+..+.+....+.+.+|+ +||+..|+..+..+
T Consensus       306 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       306 FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            01345555566677778888888888999999985 59999999766543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.50  E-value=2.1e-06  Score=87.11  Aligned_cols=141  Identities=11%  Similarity=0.024  Sum_probs=96.6

Q ss_pred             CCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchh
Q 013969           43 GFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSA  121 (433)
Q Consensus        43 g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g  121 (433)
                      +.+....+.+.+...+... ..++.|++.||+|+|+.+.++.++.++++..+..  .     .+.+.+++..++.|++.+
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~--~-----~~~~~~~~~~~l~g~~~~  322 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF--A-----TTALEVVILKMLHAFEVP  322 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh--c-----CChHHHHHHHHHHHHHHH
Confidence            5566666766555555553 4788899999999999999999988887775443  1     134555566667776665


Q ss_pred             hhhhhHHHHHhhcccCC-chhHHHH-HHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHhh
Q 013969          122 WLGTAVLVTNMRNFPLS-RGTVAGI-LKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVCLVMMYF  190 (433)
Q Consensus       122 ~~~~~~~~~~~~~Fp~~-RG~a~gi-~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~l~~~~~  190 (433)
                      .........+.+.+|+| ++++.+. .....++|+.+.+.+...+.+. ++...+.+.+++.++.++++.+.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~  394 (396)
T TIGR00882       323 FLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVFT  394 (396)
T ss_pred             HHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence            55444555566667754 7766555 3455678888888888887763 56667777777777777666543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.50  E-value=4.1e-06  Score=85.33  Aligned_cols=137  Identities=12%  Similarity=0.123  Sum_probs=83.3

Q ss_pred             HHHHHHhCCCHHHHHHHHHH-HHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHH
Q 013969           36 HSLKSVLGFNQHQLTMLGVA-NDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIAL  113 (433)
Q Consensus        36 ~~l~~~~g~s~~~~~~i~~~-~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~  113 (433)
                      +.+.+++|++.++.+++... ..++.. ..+++|++.||+|+|+.+.++.+...+..+.+.......   .+.+.+.+..
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~~  310 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP---KHLWTMALAI  310 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC---CcHHHHHHHH
Confidence            44677899999999986543 334444 478999999999999998877777666544433211111   1234333322


Q ss_pred             ----HHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHH
Q 013969          114 ----CVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAV  178 (433)
Q Consensus       114 ----~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~  178 (433)
                          +..|++.+..+......+.+++|.+   ..++..+..++|..+.+++...+.+. ++...+.+.++
T Consensus       311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~  377 (402)
T PRK11902        311 GIENLCGGMGTAAFVALLMALCNRSFSAT---QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVV  377 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence                3455666666666777788888843   23344444567777777766666654 34333333333

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.45  E-value=5.2e-07  Score=91.25  Aligned_cols=158  Identities=13%  Similarity=0.071  Sum_probs=110.0

Q ss_pred             hhhhhccHHHHHHHh-C-------CCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHh
Q 013969           28 AYNFPLYSHSLKSVL-G-------FNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVS   98 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~-g-------~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~   98 (433)
                      .++.+...|-+...| |       ++..-.+.+..+..+|.++ +++.|++.||+|||++.....+++.++.++..+...
T Consensus        57 lF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~  136 (538)
T KOG0252|consen   57 LFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVG  136 (538)
T ss_pred             hhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCC
Confidence            567777777665544 2       4444556788888899876 899999999999999999999998888774444322


Q ss_pred             cccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHH---HHHHHHHHHHhcC-------
Q 013969           99 RTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSA---AVFTEIYNMLLHN-------  167 (433)
Q Consensus        99 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~---~i~~~l~~~~~~~-------  167 (433)
                      +..+..-++.+++++++.|+|.|.=|+.+.+..+|.=. ++||.-.+.+.+..|.|-   .+++.+....|+.       
T Consensus       137 ~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~  216 (538)
T KOG0252|consen  137 TTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPST  216 (538)
T ss_pred             CCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCC
Confidence            32221226778889999999999888666555555544 459998888777666553   3444444444421       


Q ss_pred             -----ChhHHHHHHHHHHHHHHH
Q 013969          168 -----SSSKLLLVLAVGVPAVCL  185 (433)
Q Consensus       168 -----~~~~~l~~~a~~~~~v~l  185 (433)
                           ..|+..+.++++|+++.+
T Consensus       217 ~~~ld~vWRl~~glg~vpa~~~l  239 (538)
T KOG0252|consen  217 YPHLDGVWRIIFGLGAVPALLVL  239 (538)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHH
Confidence                 257788888888876654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.44  E-value=3.9e-06  Score=96.68  Aligned_cols=119  Identities=18%  Similarity=0.125  Sum_probs=90.1

Q ss_pred             HHHHHhCCCHH-HHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 013969           37 SLKSVLGFNQH-QLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALC  114 (433)
Q Consensus        37 ~l~~~~g~s~~-~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~  114 (433)
                      .+++.+|++.. +.+++.+...++.. ..++.|++.||+++|+++.++.++.+++.+++...       .+++.+++..+
T Consensus       258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  330 (1146)
T PRK08633        258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA-------PSLASVLVLFF  330 (1146)
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh-------hhHHHHHHHHH
Confidence            35778999998 88887777777775 48999999999999999999888887777655432       13455555666


Q ss_pred             HHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHH
Q 013969          115 VATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYN  162 (433)
Q Consensus       115 l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~  162 (433)
                      +.|++.++.+.+....+.+.+|+ +||++.|+......+|+++.+.+..
T Consensus       331 ~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~  379 (1146)
T PRK08633        331 LFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTT  379 (1146)
T ss_pred             HHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            77777777776667778888885 5999999988887777755544433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.44  E-value=7.5e-07  Score=88.16  Aligned_cols=130  Identities=16%  Similarity=0.112  Sum_probs=95.6

Q ss_pred             hhhhhhhccHHH-HHHHhCCCH----HHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhc
Q 013969           26 GNAYNFPLYSHS-LKSVLGFNQ----HQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSR   99 (433)
Q Consensus        26 g~~y~~s~~~~~-l~~~~g~s~----~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~   99 (433)
                      ...|-+.++.-. ++...+-+.    .-.+.+++...+..++ ++.+|.++||+|||.+++++.+..++.|..+..    
T Consensus        42 ~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~----  117 (451)
T KOG2615|consen   42 SSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL----  117 (451)
T ss_pred             cchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH----
Confidence            456666665533 444444443    2346677777777754 999999999999999999999999998776654    


Q ss_pred             ccCchhHHHHHH-HHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969          100 TVESLPYWLLWI-ALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus       100 ~~~~~~~~~l~~-~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                         +.++ +.++ .++++|+..|-. ...-+.+++.++ ++|+++++.+...+++|-.+.|.+...+
T Consensus       118 ---S~~F-~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyl  179 (451)
T KOG2615|consen  118 ---SRNF-AAFVLARFLGGIFKGNL-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYL  179 (451)
T ss_pred             ---HHHH-HHHHHHHHhhhhccCch-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHH
Confidence               2346 4444 599999887744 345677889997 5699999999999999998877666544

>TIGR01272 gluP glucose/galactose transporter

Probab=98.43  E-value=4.5e-06  Score=82.40  Aligned_cols=143  Identities=11%  Similarity=0.038  Sum_probs=98.4

Q ss_pred             HHHHHHHHH-HhhhhhhhhccHHHH-HH--HhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHH
Q 013969           15 LGAAVWVQI-AAGNAYNFPLYSHSL-KS--VLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFG   89 (433)
Q Consensus        15 l~~~~l~~~-~~g~~y~~s~~~~~l-~~--~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g   89 (433)
                      +..+++..+ ..|..-+.+.+.+.+ ++  .+|++.++.+...+....++.. .++.+++.||+|+|+++.++.++..++
T Consensus       142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~  221 (310)
T TIGR01272       142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLL  221 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            334444332 344444444444443 33  3699999999876666666654 799999999999999999888887777


Q ss_pred             HHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969           90 YGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      .+++..  .+     ..+.++ ...+.|++.+..|+.......+.+|++.+.+.++..++ .+|+++.|++...+.+
T Consensus       222 ~~l~~~--~~-----~~~~~~-~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~~~~-~~Gg~i~P~l~G~lad  289 (310)
T TIGR01272       222 SIGAAL--TH-----GYVAMW-FVLALGLFNSIMFPTIFSLALNALGRHTSQGSGILCLA-IVGGAIVPLLQGSLAD  289 (310)
T ss_pred             HHHHHH--cC-----CHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH-HhcchHHHHHHHHHHH
Confidence            654432  11     112222 23356788888888888889999998888888886544 5899999888887765

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.42  E-value=1.1e-05  Score=82.47  Aligned_cols=165  Identities=18%  Similarity=0.191  Sum_probs=111.0

Q ss_pred             HHHHhhhhhhhhccHHHHHHHhC-CCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHh
Q 013969           21 VQIAAGNAYNFPLYSHSLKSVLG-FNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVS   98 (433)
Q Consensus        21 ~~~~~g~~y~~s~~~~~l~~~~g-~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~   98 (433)
                      .....+..|.|.   +.+-++.| ++....+...+.+.+.-. +..+.+++..|+|.|+++.++.+..++=+.+++.. .
T Consensus       219 ~~~~~~~~~~f~---~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~-~  294 (400)
T PF03825_consen  219 IGISHAAYYTFF---SIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF-S  294 (400)
T ss_pred             HHHHHHHHHHHH---HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh-c
Confidence            334445556553   22344555 777777765555555544 46788999999999999999999988876665542 1


Q ss_pred             cccCchhHHHHHH----HHHHHHhchhhhhhhHHHHHhhcccCC-chhHHHHHHh-hhhhHHHHHHHHHHHHhcC-----
Q 013969           99 RTVESLPYWLLWI----ALCVATNSSAWLGTAVLVTNMRNFPLS-RGTVAGILKG-YGGLSAAVFTEIYNMLLHN-----  167 (433)
Q Consensus        99 ~~~~~~~~~~l~~----~~~l~g~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~-~~glg~~i~~~l~~~~~~~-----  167 (433)
                      .     +.+....    -..+-|+.-++.+.++...+.+..|++ |+++.|+..+ .+|+|.++.+.+...+++.     
T Consensus       295 ~-----~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~  369 (400)
T PF03825_consen  295 D-----PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG  369 (400)
T ss_pred             C-----CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh
Confidence            1     1222222    134567667777888899999999965 9999998765 5789999988888877753     


Q ss_pred             --ChhHHHHHHHHHHHHHHHHHHhhcccC
Q 013969          168 --SSSKLLLVLAVGVPAVCLVMMYFVRPC  194 (433)
Q Consensus       168 --~~~~~l~~~a~~~~~v~l~~~~~~r~~  194 (433)
                        ++..+..+.+++.+++.++.+++.|++
T Consensus       370 ~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  370 MFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence              233445555555566666666666665

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.40  E-value=1.1e-05  Score=81.55  Aligned_cols=126  Identities=16%  Similarity=0.290  Sum_probs=84.0

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 013969           38 LKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVA  116 (433)
Q Consensus        38 l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  116 (433)
                      +++.+|++..+.+++.....++... +++.|++.||+|++..  .+.....++...+.......  ..+.+.+.+..++.
T Consensus       234 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  309 (394)
T PRK11652        234 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPGWFG--VMNVWTLLVPAALF  309 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence            4666999999998876666666654 7888999999983332  23222222222221111110  11245555556677


Q ss_pred             HhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcC
Q 013969          117 TNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHN  167 (433)
Q Consensus       117 g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  167 (433)
                      |.|.++.+........+.+|+++|++.++..+...+|+.+.+.+...+...
T Consensus       310 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        310 FFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            777787777777778889999999999999988889998888776655433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.39  E-value=1.7e-05  Score=83.82  Aligned_cols=137  Identities=19%  Similarity=0.183  Sum_probs=99.9

Q ss_pred             HHHH-HHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHH
Q 013969           35 SHSL-KSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIA  112 (433)
Q Consensus        35 ~~~l-~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~  112 (433)
                      .|.+ ++++|.+....+++.....+|+.. +++.+++.+|+++++++..+.++++++++.+++.       ++.|..++.
T Consensus       241 lPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-------~~~~~~~~~  313 (524)
T PF05977_consen  241 LPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-------PSFWLALIA  313 (524)
T ss_pred             hhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-------hHHHHHHHH
Confidence            4444 678999999999988888899865 8889999999999999999998888877765441       346666666


Q ss_pred             HHHHHhchhhhhhhHHHHHhhcccCC-chhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHH
Q 013969          113 LCVATNSSAWLGTAVLVTNMRNFPLS-RGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAV  178 (433)
Q Consensus       113 ~~l~g~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~  178 (433)
                      .++.|.+.........+.+++.-|++ ||++.++..+....+..+.+.+...+.+. +....+...++
T Consensus       314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~  381 (524)
T PF05977_consen  314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGA  381 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            77788777766666678889999965 99999998766655555555555544432 34444444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10054 putative transporter; Provisional

Probab=98.37  E-value=1.5e-05  Score=81.16  Aligned_cols=150  Identities=15%  Similarity=0.085  Sum_probs=92.9

Q ss_pred             HhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 013969           41 VLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNS  119 (433)
Q Consensus        41 ~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g  119 (433)
                      +.+.+...++.+.....+... ..++.|++.||+++|+.+.++.++..+++..+... .     .+++.+.+...+.|+|
T Consensus       238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~g  311 (395)
T PRK10054        238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS-G-----NSLLLWGMSAAVFTVG  311 (395)
T ss_pred             ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc-c-----hHHHHHHHHHHHHHHH
Confidence            445666666665444434433 36888999999999999999988888887755431 1     1345444556667777


Q ss_pred             hhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 013969          120 SAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVCLVMMYFVRPCTPA  197 (433)
Q Consensus       120 ~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~l~~~~~~r~~~~~  197 (433)
                      .+...+.....+.+.-| ++||++.|.... ..+|.++.+.+...+++. .....+..++...++.-++...-.|++|+.
T Consensus       312 ~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~-~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (395)
T PRK10054        312 EIIYAPGEYMLIDHIAPPGMKASYFSAQSL-GWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARPWG  390 (395)
T ss_pred             HHHHHhhHHHHHHHhCCcccceehHhHHHH-HHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCccc
Confidence            65444444445666667 458999886553 347888888777777764 333344444444444444444555555543

>PRK10133 L-fucose transporter; Provisional

Probab=98.37  E-value=5.7e-06  Score=85.60  Aligned_cols=120  Identities=9%  Similarity=0.017  Sum_probs=89.8

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHH
Q 013969           39 KSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVAT  117 (433)
Q Consensus        39 ~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g  117 (433)
                      ++.+|+|..+.+.......+++.+ .+++|++.||+|+|+++..+.++..++.+...+  ..   .  .+. .....+.|
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~--~~---~--~~~-~~~~~l~g  358 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF--AG---G--HVG-LIALTLCS  358 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH--cC---C--hHH-HHHHHHHH
Confidence            567899999999977777777754 899999999999999998887777665543322  11   1  122 22344577


Q ss_pred             hchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcC
Q 013969          118 NSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHN  167 (433)
Q Consensus       118 ~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  167 (433)
                      +|.+..+........+.+|++.+.+.++.... .+|+++.+++...+.+.
T Consensus       359 lg~~~i~P~~~s~a~~~~~~~~~~as~l~~~~-~~g~~~~~~i~G~l~~~  407 (438)
T PRK10133        359 AFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMT-IIGGGIVTPVMGFVSDA  407 (438)
T ss_pred             HHHHHHHHHHHHHHHcccchhhccchhHHhHH-hccchHHHHHHHHHHHh
Confidence            88888898888899999998888888888654 47788888888876653

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.34  E-value=1.5e-05  Score=81.15  Aligned_cols=123  Identities=14%  Similarity=0.043  Sum_probs=87.3

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 013969           38 LKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVA  116 (433)
Q Consensus        38 l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  116 (433)
                      +++.+|.+..+.+.+.....++... +++.|++.||+++|+++..|.+ .++..+.+..  .     +++|...+..++.
T Consensus       232 ~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~--~-----~~~~~~~~~~~~~  303 (393)
T PRK11195        232 APVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMAL--Q-----HSLLPAYPLLILI  303 (393)
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHH--H-----hHHHHHHHHHHHH
Confidence            5677899999999987777788754 8999999999999998888753 3333332221  1     2345444555567


Q ss_pred             HhchhhhhhhHHHHHhhcccCC--chhHHHHHHhhhhhHHHHHHHHHHHHhcCC
Q 013969          117 TNSSAWLGTAVLVTNMRNFPLS--RGTVAGILKGYGGLSAAVFTEIYNMLLHNS  168 (433)
Q Consensus       117 g~g~g~~~~~~~~~~~~~Fp~~--RG~a~gi~~~~~glg~~i~~~l~~~~~~~~  168 (433)
                      |++.++...+..+.+++.-|++  +|++.++......++..+...+......-+
T Consensus       304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~  357 (393)
T PRK11195        304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLG  357 (393)
T ss_pred             HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcC
Confidence            7777777666667777766653  699999998888888888777766554433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.34  E-value=2.6e-05  Score=78.93  Aligned_cols=118  Identities=12%  Similarity=0.064  Sum_probs=71.8

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHh-hccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 013969           38 LKSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVA  116 (433)
Q Consensus        38 l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  116 (433)
                      +++++|++..+.+.+.....++. ...++.|++.||+|+|+++.++.++..++...+....       ..+...+...+.
T Consensus       230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~  302 (392)
T PRK10473        230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP-------SHAVSLFGITLI  302 (392)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence            46788999999887665555555 4478899999999999999999998888777665421       112222222222


Q ss_pred             HhchhhhhhhHHHHHhhccc--CCchhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969          117 TNSSAWLGTAVLVTNMRNFP--LSRGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus       117 g~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                      +.|.+..+...  ...+..|  ++.|.+.++...+..+|+++.+.+...+
T Consensus       303 ~~g~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~  350 (392)
T PRK10473        303 CAGFSVGFGVA--MSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVL  350 (392)
T ss_pred             HHHHHHHhHHH--HHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333223222  2233445  3457777665555556666655555433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.34  E-value=1.1e-05  Score=83.78  Aligned_cols=137  Identities=17%  Similarity=0.126  Sum_probs=81.4

Q ss_pred             hhhhhhccHHHH-HHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHH--------HHHHHHHHHHHHHHHHHH
Q 013969           27 NAYNFPLYSHSL-KSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLV--------LFIGSLACFFGYGVLWLA   96 (433)
Q Consensus        27 ~~y~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~--------~~ig~~l~~~g~~~~~~~   96 (433)
                      ..|.+..+.|.+ ++.+|++..+.++......++.. ..+++|++.||+++|+.        +..+......+...+...
T Consensus       276 ~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (465)
T TIGR00894       276 LYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALP  355 (465)
T ss_pred             HHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666677774 77799999999987766666664 58999999998764421        111111111111111111


Q ss_pred             HhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcC
Q 013969           97 VSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHN  167 (433)
Q Consensus        97 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  167 (433)
                      ...   . +.+...++..+.+.+.+..+........+..|+++|.+.|+......+|+.+.+.+...+.+.
T Consensus       356 ~~~---~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~  422 (465)
T TIGR00894       356 YLS---A-AFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQ  422 (465)
T ss_pred             HcC---C-chHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCC
Confidence            111   1 122222333344433333333333445567788899999999988889998888887766653

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.31  E-value=8.6e-06  Score=84.01  Aligned_cols=150  Identities=15%  Similarity=-0.012  Sum_probs=78.3

Q ss_pred             hhhhhhccHHHH-HHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCch
Q 013969           27 NAYNFPLYSHSL-KSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESL  104 (433)
Q Consensus        27 ~~y~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~  104 (433)
                      ..|.+..+.|.+ ++..|++..+.+++.....++.. ..+++|++.||+|+++....+.++..+............  ..
T Consensus       266 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  343 (438)
T TIGR00712       266 LRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNP--AG  343 (438)
T ss_pred             HHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcC--CC
Confidence            345666677775 55689999998886665555554 588999999999755433334333222211111101111  11


Q ss_pred             hHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHH-HHHHHHHHHhcC-ChhHHHHHHHH
Q 013969          105 PYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAA-VFTEIYNMLLHN-SSSKLLLVLAV  178 (433)
Q Consensus       105 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~-i~~~l~~~~~~~-~~~~~l~~~a~  178 (433)
                      +.+..+...+..|.+.............+.+|+ +||++.|+......+|+. +.+.+...+.+. ++...+.++++
T Consensus       344 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~  420 (438)
T TIGR00712       344 NPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG  420 (438)
T ss_pred             chHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHH
Confidence            223332222233322211111112345688885 599999998766556654 445555555543 33333333333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.31  E-value=2.4e-05  Score=77.58  Aligned_cols=86  Identities=20%  Similarity=0.278  Sum_probs=70.1

Q ss_pred             hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhH
Q 013969           28 AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPY  106 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~  106 (433)
                      .|.+..|     +++|+++.|++.+...+..... ++++.|.+.||+|||+..++-.++.+++++.     .+   ++++
T Consensus        55 pY~Y~LY-----~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-----k~---~~~~  121 (354)
T PF05631_consen   55 PYLYALY-----ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-----KH---SSNY  121 (354)
T ss_pred             chhHHHH-----HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-----Hh---cccc
Confidence            4666544     5799999999998887777764 5999999999999999999999999988872     22   2458


Q ss_pred             HHHHHHHHHHHhchhhhhhh
Q 013969          107 WLLWIALCVATNSSAWLGTA  126 (433)
Q Consensus       107 ~~l~~~~~l~g~g~g~~~~~  126 (433)
                      +.+++-++++|+++.+.+.+
T Consensus       122 ~~L~~GRvlgGiaTSLLfS~  141 (354)
T PF05631_consen  122 PVLLLGRVLGGIATSLLFSA  141 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999877654

>TIGR00896 CynX cyanate transporter

Probab=98.29  E-value=1.4e-05  Score=79.75  Aligned_cols=132  Identities=13%  Similarity=0.024  Sum_probs=88.9

Q ss_pred             hhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhhc-ccccccccccc-CchHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 013969           26 GNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKF-PPWLVLFIGSLACFFGYGVLWLAVSRTVES  103 (433)
Q Consensus        26 g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~-G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~  103 (433)
                      ...+.+..+.|.+.++.|++..+.+.+.+...++... .++.|++.||+ ++|+++.++.++.+++.+.+....     .
T Consensus       211 ~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  285 (355)
T TIGR00896       211 GLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP-----M  285 (355)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh-----h
Confidence            3445556677777667899999999877777777754 89999999999 566677777777777776554321     1


Q ss_pred             hhHHHHHHHHHHHHhchhhhhhhHHHHHhhcc-c-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          104 LPYWLLWIALCVATNSSAWLGTAVLVTNMRNF-P-LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       104 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~F-p-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      .+.+ +  ..++.|++.+..+..........+ + +++|.+.|+......+++++.+++...+.
T Consensus       286 ~~~~-~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~  346 (355)
T TIGR00896       286 HGLW-A--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLH  346 (355)
T ss_pred             hHHH-H--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111 1  334567777766655555555444 3 45799999877766677777766666554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.29  E-value=9.6e-06  Score=93.64  Aligned_cols=133  Identities=17%  Similarity=0.033  Sum_probs=95.1

Q ss_pred             cHHH-HHHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhc------------
Q 013969           34 YSHS-LKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSR------------   99 (433)
Q Consensus        34 ~~~~-l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~------------   99 (433)
                      +.|. +++.+|.+..+.+++.+...+++.. +++.|++.||.++++.+.++.++.+++.+.+.+...+            
T Consensus       247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  326 (1140)
T PRK06814        247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL  326 (1140)
T ss_pred             HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence            4455 4677899999999987777788764 8999999999888887777776666554433321000            


Q ss_pred             -ccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          100 -TVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       100 -~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                       .....+.|.+++..++.|++.++...+..+.+++.+|+ +||++.|+......++..+.+.+...+..
T Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00012345666666677888887777778888999985 59999999988888888887777666653

>TIGR00898 2A0119 cation transport protein

Probab=98.28  E-value=1.4e-05  Score=83.72  Aligned_cols=96  Identities=10%  Similarity=0.033  Sum_probs=69.2

Q ss_pred             ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-Cch
Q 013969           62 VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRG  140 (433)
Q Consensus        62 ~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG  140 (433)
                      ..++.+++.||+|+|+++.++.++.+++++++... ..    ...+......++.+.+.+..+........+.||+ .|+
T Consensus       371 ~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  445 (505)
T TIGR00898       371 AKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV-PV----DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRN  445 (505)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc-CC----CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHh
Confidence            46778999999999999999998888877755442 11    1123333334445555555565666777899995 599


Q ss_pred             hHHHHHHhhhhhHHHHHHHHHH
Q 013969          141 TVAGILKGYGGLSAAVFTEIYN  162 (433)
Q Consensus       141 ~a~gi~~~~~glg~~i~~~l~~  162 (433)
                      +++|+..+...+|+++.+.+..
T Consensus       446 ~~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       446 LGVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             hhHhHHHHHHHHHHHHHhHHHH
Confidence            9999999988899988777766

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.27  E-value=4.2e-06  Score=83.35  Aligned_cols=123  Identities=14%  Similarity=0.106  Sum_probs=77.1

Q ss_pred             hhhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHh-hccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           28 AYNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        28 ~y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      .+.+..+.|. +++.+|++..+.+.+.....+.. ...++.|++.||+|+|+....+.++...+..++.......   .+
T Consensus       241 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  317 (366)
T TIGR00886       241 FLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSP---LS  317 (366)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCc---ch
Confidence            4444445555 46778999999987665555555 4589999999999999988888777766665544322110   02


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhH
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLS  153 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg  153 (433)
                      .+.......+.+++.+..+........+.+|++||.+.|+..+...+|
T Consensus       318 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       318 LAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCC
Confidence            333222222222233333334445667778899999999977665444

>TIGR01272 gluP glucose/galactose transporter

Probab=98.26  E-value=2.2e-05  Score=77.47  Aligned_cols=72  Identities=19%  Similarity=0.077  Sum_probs=60.1

Q ss_pred             HHhhhhhHHHHHHHHHhhcccceeeecchhhHHHhh---cCCcc--chhHHHHHHhHHHHhhhcccchHHHHHhhhc
Q 013969          346 EAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQ---GVHDT--TILLSLFSFCNFVGRLGGGVVSEHFVRLVQS  417 (433)
Q Consensus       346 ~~l~t~~Fwll~~~~~~~~g~g~~~i~n~~~i~~s~---G~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~  417 (433)
                      ..+|++.+|+..+.+++-.|.-..+.+......++.   |.++.  +..++.+..+-.+||++.++++||+++++..
T Consensus       135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l  211 (310)
T TIGR01272       135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYL  211 (310)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            467899999999999998888888777788787653   66654  5789999999999999999999999877653

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.26  E-value=3.4e-05  Score=80.71  Aligned_cols=140  Identities=17%  Similarity=0.172  Sum_probs=94.3

Q ss_pred             hhhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCch--HHHHHHHHHHHHHH-HHHH-HHHhc
Q 013969           25 AGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPW--LVLFIGSLACFFGY-GVLW-LAVSR   99 (433)
Q Consensus        25 ~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r--~~~~ig~~l~~~g~-~~~~-~~~~~   99 (433)
                      .|..-.++......++++|++..|+..+.....+... .+.+.|++.||+|+|  +++.++.++..+-. ..+. + ...
T Consensus       295 dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~-~~~  373 (477)
T PF11700_consen  295 DGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGF-WPS  373 (477)
T ss_pred             HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHh-hhc
Confidence            3433333333333577999999999887777667665 589999999999999  78777776653321 1111 1 111


Q ss_pred             ccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          100 TVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       100 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      ..+..+-|.++++.++.|+..|..+..+=.+.++.-|+ +.+.-.|+.....-.++.+.|.++..+.
T Consensus       374 ~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~  440 (477)
T PF11700_consen  374 FFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLIT  440 (477)
T ss_pred             ccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11112367888888899999998898888889999994 6899999976654455555555555444

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.22  E-value=8.5e-06  Score=80.19  Aligned_cols=127  Identities=24%  Similarity=0.190  Sum_probs=92.5

Q ss_pred             hhhhhccHHHH-HHHhCCC-HHHHHHHHHHHHHHh-hccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCch
Q 013969           28 AYNFPLYSHSL-KSVLGFN-QHQLTMLGVANDIGE-NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESL  104 (433)
Q Consensus        28 ~y~~s~~~~~l-~~~~g~s-~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~  104 (433)
                      .+.+..+.|.+ ++++|++ ..+.+.+.....+.. ...++.|++.||+|+|+...+......++...+......    .
T Consensus       222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  297 (352)
T PF07690_consen  222 FSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS----S  297 (352)
T ss_dssp             HHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH----C
T ss_pred             HHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh----h
Confidence            44466677775 8999999 788887655555555 458999999999999888888777777766654331111    1


Q ss_pred             hHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHH
Q 013969          105 PYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFT  158 (433)
Q Consensus       105 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~  158 (433)
                      +.+......++.|++.+..+......+.+.+| ++||++.|+.....++|+.+.|
T Consensus       298 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  298 SPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            23333445556777778777778888999998 5699999999998888887754

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.21  E-value=2e-06  Score=82.11  Aligned_cols=117  Identities=16%  Similarity=0.132  Sum_probs=85.5

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhhc-cccccccccc-cCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHH
Q 013969           36 HSLKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNK-FPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIAL  113 (433)
Q Consensus        36 ~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr-~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~  113 (433)
                      .+.+...+++.++..++.+....-..+ .+++|++.|| +|.|.-.++=.++..+|.+.++...   + +.++|.+.+-+
T Consensus        68 ~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg---i-~~aFw~M~~GR  143 (459)
T KOG4686|consen   68 IDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG---I-SHAFWTMLAGR  143 (459)
T ss_pred             hhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch---H-HHHHHHHHhhh
Confidence            334555566667777766665555544 8899999998 8998888888888888888775421   1 23589988899


Q ss_pred             HHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHH
Q 013969          114 CVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAV  156 (433)
Q Consensus       114 ~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i  156 (433)
                      ++.|+|.-..-.+-.+....||. |+-+.+.|+-.+..-+|+.+
T Consensus       144 F~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gstv  187 (459)
T KOG4686|consen  144 FLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTV  187 (459)
T ss_pred             eeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhcee
Confidence            99999875444455677889998 56999999977766666643

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.19  E-value=2.7e-05  Score=79.72  Aligned_cols=118  Identities=18%  Similarity=0.182  Sum_probs=80.5

Q ss_pred             HhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhc
Q 013969           41 VLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNS  119 (433)
Q Consensus        41 ~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g  119 (433)
                      .++ +..+.+.+.....++.. ..++.|++.||+|+|+++.++.++..+++..+... .     .+.+.+.+..++.|++
T Consensus       252 ~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~g~~  324 (437)
T TIGR00792       252 VLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA-G-----SNLPLILVLIILAGFG  324 (437)
T ss_pred             ecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-c-----hhHHHHHHHHHHHHHH
Confidence            344 34455555555555554 48899999999999999999998888887765442 1     1244444555667777


Q ss_pred             hhhhhhhHHHHHhhccc--------CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          120 SAWLGTAVLVTNMRNFP--------LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       120 ~g~~~~~~~~~~~~~Fp--------~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      .+..+......+.+..|        +++|.+.|+......+|.++.+.+...++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll  378 (437)
T TIGR00792       325 QNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL  378 (437)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76665555555555432        34799999998888888888877766655

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.18  E-value=3.1e-05  Score=78.97  Aligned_cols=127  Identities=12%  Similarity=-0.015  Sum_probs=82.9

Q ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHh-hcc-ccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHH
Q 013969           33 LYSHSLKSVLGFNQHQLTMLGVANDIGE-NVG-LLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLW  110 (433)
Q Consensus        33 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~-~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~  110 (433)
                      .+.|.+.++.+.+..+.+++.....++. ... +..++..||++.|+.+..+.++.++++.++...       .+++.+.
T Consensus       229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~  301 (400)
T PRK11646        229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-------SNLQQLF  301 (400)
T ss_pred             HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-------hhHHHHH
Confidence            3456654554446777777554444433 333 444444456787877778888777777655431       1234444


Q ss_pred             HHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          111 IALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       111 ~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      +..++.++|.+.........+.+..| ++||++.|+.....++|.++.+.+...+.+
T Consensus       302 ~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~  358 (400)
T PRK11646        302 TLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD  358 (400)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence            44455666666555555677788888 569999999999988999888877777765

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.16  E-value=0.00018  Score=73.62  Aligned_cols=56  Identities=18%  Similarity=0.141  Sum_probs=41.8

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccC-chHHHHHHHHHHHHHHH
Q 013969           36 HSLKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFP-PWLVLFIGSLACFFGYG   91 (433)
Q Consensus        36 ~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G-~r~~~~ig~~l~~~g~~   91 (433)
                      +.+-++.|+|..|++.+.+...+...+ .++.|.++||++ +|+++.+..++.++..+
T Consensus        26 ~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~   83 (400)
T PF03825_consen   26 PLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALL   83 (400)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHH
Confidence            344667899999999988877777765 899999999986 56666665555555433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.14  E-value=6.2e-05  Score=78.21  Aligned_cols=130  Identities=14%  Similarity=0.070  Sum_probs=83.6

Q ss_pred             hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCc-hh
Q 013969           28 AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVES-LP  105 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~-~~  105 (433)
                      .+....|+..+-++-|++..++.+......+... ..+++.++.||+|||++++++..++.+..+.+.....-.... +.
T Consensus       286 i~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~  365 (485)
T KOG0569|consen  286 INAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSW  365 (485)
T ss_pred             cceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            5555667777888889999988887776666654 589999999999999999999999888777665432211001 11


Q ss_pred             HHHHHH---HHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHH
Q 013969          106 YWLLWI---ALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFT  158 (433)
Q Consensus       106 ~~~l~~---~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~  158 (433)
                      .+..++   +..+...+.|.. ..+.-..+|.||. .|..|.......+-++..+..
T Consensus       366 ~~y~~i~~~~~~~~~f~~G~g-pi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~  421 (485)
T KOG0569|consen  366 LSYLCIAAIFLFIISFAIGPG-PIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVG  421 (485)
T ss_pred             HHHHHHHHHHHHHHhhhcCCC-chhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHH
Confidence            111111   111222222211 2234567999995 599999997776655554443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.14  E-value=9.9e-05  Score=74.64  Aligned_cols=143  Identities=8%  Similarity=-0.034  Sum_probs=80.7

Q ss_pred             hhhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhhccccccccccccCc---hHHHHH-HHHHHHHHHHHHHHHHhcc
Q 013969           25 AGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFPP---WLVLFI-GSLACFFGYGVLWLAVSRT  100 (433)
Q Consensus        25 ~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~~~~~G~l~Dr~G~---r~~~~i-g~~l~~~g~~~~~~~~~~~  100 (433)
                      ....|.+..+.|++-++.|++.. .+.......+....  -.|++.||..+   |+.... ..++.++....+.  ..+ 
T Consensus       205 ~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~--g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~--~~~-  278 (368)
T TIGR00903       205 VALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLI--GVAVIPDRVARAGLRSIYIRAAALLIAAFFLALA--FEL-  278 (368)
T ss_pred             HHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHH--HHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH--Hcc-
Confidence            34567777788997677888865 44433332222222  23667777643   444332 3333333333222  111 


Q ss_pred             cCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhcCChhHHHHHHHH
Q 013969          101 VESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAV  178 (433)
Q Consensus       101 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~l~~~a~  178 (433)
                        +  .+...++..+.+.+....+.......++.||+ .||++.|+..+...+++...+++...++. +....+.+.++
T Consensus       279 --~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~  352 (368)
T TIGR00903       279 --N--RLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLAI  352 (368)
T ss_pred             --c--cHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence              1  22223333445544444444455677899996 59999999999878998888877776663 43344444444

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.13  E-value=3.6e-05  Score=80.42  Aligned_cols=166  Identities=17%  Similarity=0.114  Sum_probs=102.3

Q ss_pred             HHHhhhhhhhh-ccHHHHHHHhCCCHHHHHHHHHHHHHHhhccccccccccccC-----chHHHHHHHHHHH-HHHHHHH
Q 013969           22 QIAAGNAYNFP-LYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFP-----PWLVLFIGSLACF-FGYGVLW   94 (433)
Q Consensus        22 ~~~~g~~y~~s-~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~~~~~G~l~Dr~G-----~r~~~~ig~~l~~-~g~~~~~   94 (433)
                      .+..|..+... ...+.+++++|+|.++++.+.+...+...+.++.|.+.||++     ||+.++++.++.+ +++..+.
T Consensus        35 y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~  114 (468)
T TIGR00788        35 LFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLP  114 (468)
T ss_pred             HHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcc
Confidence            34555544333 334446888999999998887777777777888999999998     7888888877763 3333221


Q ss_pred             HHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHH---hhhhhHHHHHHHHHHHHhcC-Chh
Q 013969           95 LAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILK---GYGGLSAAVFTEIYNMLLHN-SSS  170 (433)
Q Consensus        95 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~---~~~glg~~i~~~l~~~~~~~-~~~  170 (433)
                      .     .++ ......+..++.+++.+..+.++-....+..++++....++..   ...++|..+.+.+...+.+. +|+
T Consensus       115 ~-----~~~-~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~  188 (468)
T TIGR00788       115 G-----KVS-SAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTR  188 (468)
T ss_pred             c-----ccc-hHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            1     111 1222223556677778888888888889999844433322222   22236666665555555543 455


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccC
Q 013969          171 KLLLVLAVGVPAVCLVMMYFVRPC  194 (433)
Q Consensus       171 ~~l~~~a~~~~~v~l~~~~~~r~~  194 (433)
                      ..+.+.+.++++. ++...++++.
T Consensus       189 ~~f~~~a~l~ll~-~~~~~~~~E~  211 (468)
T TIGR00788       189 ILFLITAALLLLQ-LFVSNLSKER  211 (468)
T ss_pred             hHHHHHHHHHHHH-HHHHHhcccc
Confidence            5555666665555 4445666554

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.13  E-value=2.5e-05  Score=78.69  Aligned_cols=148  Identities=18%  Similarity=0.194  Sum_probs=99.0

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 013969           38 LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVA  116 (433)
Q Consensus        38 l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  116 (433)
                      -+.++||++.++.++.....+... .+++.|+|.||+|+|+++.++.++..+..+...+  ...  +   ..+++++.+.
T Consensus       279 g~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~--~~~--~---~~f~i~gll~  351 (438)
T COG2270         279 GAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIF--LEG--E---LDFWILGLLV  351 (438)
T ss_pred             HHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHH--ccc--c---HHHHHHHHHH
Confidence            356999999999998877777765 5899999999999999999999988876654332  121  1   2334466677


Q ss_pred             HhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhc---CChhHHHHHHHHHHHHHHHHHHhhcc
Q 013969          117 TNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLH---NSSSKLLLVLAVGVPAVCLVMMYFVR  192 (433)
Q Consensus       117 g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~---~~~~~~l~~~a~~~~~v~l~~~~~~r  192 (433)
                      |...|..+..+=....|..|+ |-|.-.|+.... |=.+.+++|+.-.++.   ++.+.-+..+.++ ..++++....++
T Consensus       352 g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyalt-gra~S~~gp~lv~v~t~iTg~~r~g~~~i~vl-l~iGl~~L~~v~  429 (438)
T COG2270         352 GTSLGGAQASSRSYLARLVPKGKEGRFFGLYALT-GRAASFLGPFLVAVITQITGSSRAGVLSIIVL-LLIGLLLLLRVK  429 (438)
T ss_pred             HHhcchHHHHHHHHHHHhCCCccccceeehhhhh-hhHHHHHHHHHHHHHHHHhcchhhHHHHHHHH-HHhhHhhEEeec
Confidence            777787888888889999995 578888887665 4444455555555553   3433333333332 233444444444


Q ss_pred             cC
Q 013969          193 PC  194 (433)
Q Consensus       193 ~~  194 (433)
                      .+
T Consensus       430 ~~  431 (438)
T COG2270         430 VP  431 (438)
T ss_pred             CC
Confidence            44

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.13  E-value=3.1e-05  Score=79.37  Aligned_cols=134  Identities=10%  Similarity=0.097  Sum_probs=81.0

Q ss_pred             hhhhhhhccHHHHHHHh--CCCHHHHHHHHHHHHHHhhc-cccccccccccCchHH-HHHHHHHHHHHHHHHHHHHhccc
Q 013969           26 GNAYNFPLYSHSLKSVL--GFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLV-LFIGSLACFFGYGVLWLAVSRTV  101 (433)
Q Consensus        26 g~~y~~s~~~~~l~~~~--g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~-~~ig~~l~~~g~~~~~~~~~~~~  101 (433)
                      ...+.+..+.|++.+++  +.+..+.+.+.....++... .++.|++.||+|+|+. ..+..++.++++.+. . . .  
T Consensus       256 ~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~-~-~-~--  330 (412)
T TIGR02332       256 NTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLA-S-A-T--  330 (412)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHH-H-h-c--
Confidence            44667777888876654  67777888776666666654 7899999999998775 344444444443221 1 1 1  


Q ss_pred             CchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          102 ESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       102 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      +.+ ...+ ...++.+.|.............+.+|+ +||++.|+......+|+++.+.+...+.+
T Consensus       331 ~~~-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~  394 (412)
T TIGR02332       331 DHN-LIQL-LGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKD  394 (412)
T ss_pred             CCH-HHHH-HHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence            111 1111 111122222211111122333556884 59999999999988999888877766665

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.12  E-value=3.4e-05  Score=76.47  Aligned_cols=136  Identities=15%  Similarity=0.000  Sum_probs=78.0

Q ss_pred             hhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhH
Q 013969           29 YNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPY  106 (433)
Q Consensus        29 y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~  106 (433)
                      +.+..+.|. +++++|++..+.+.+.....++.. ..++.|++.||++.|+...+...........+.......  ..+.
T Consensus       233 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  310 (379)
T TIGR00881       233 TGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNP--AANP  310 (379)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCc--chhH
Confidence            344445555 467789999999987766666665 488999999986433322222222111111111111111  1123


Q ss_pred             HHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          107 WLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       107 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      +...++.++.|...............+.+| ++||++.|+......+|+.+.+.+...+.+
T Consensus       311 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  371 (379)
T TIGR00881       311 LMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD  371 (379)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence            333333444443332223333455788898 459999999988888998887777666553

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.10  E-value=2.8e-05  Score=79.24  Aligned_cols=143  Identities=10%  Similarity=0.030  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhh
Q 013969           48 QLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTA  126 (433)
Q Consensus        48 ~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~  126 (433)
                      -.+...+...+.-. +..+..++.+|+|+|+.++++.+.+++=+...++.       ++.|.+.+...+-|+-.++...+
T Consensus       260 ~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~-------~~~~~i~~~klLH~~e~~l~lva  332 (412)
T PF01306_consen  260 MYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA-------TNPWVISLIKLLHALEFPLLLVA  332 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---------SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh-------cchHHHHHHHHHHHHHHHHHHHH
Confidence            34555555444443 47888999999999999999999988876654431       34677777888888888888888


Q ss_pred             HHHHHhhcccCC-chhHHHHH-HhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 013969          127 VLVTNMRNFPLS-RGTVAGIL-KGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVCLVMMYFVRPCTPA  197 (433)
Q Consensus       127 ~~~~~~~~Fp~~-RG~a~gi~-~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~l~~~~~~r~~~~~  197 (433)
                      ..+.+++.||+| ..+.-.+. ....++|..+++++...+.+. +.+...+.++.+.+...+++.+.++..++.
T Consensus       333 ~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  333 AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence            999999999977 56776664 456789999999999998875 345555667777778888888888876553

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09848 glucuronide transporter; Provisional

Probab=98.09  E-value=3.4e-05  Score=79.73  Aligned_cols=123  Identities=15%  Similarity=0.092  Sum_probs=83.9

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 013969           38 LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVA  116 (433)
Q Consensus        38 l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  116 (433)
                      +++.+|.+.....+......++.. ..++.|++.||+|+|+++.+|.++..++++.+.+.  .   ..++|.+++..++.
T Consensus       255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~--~---~~~~~~~~~~~~l~  329 (448)
T PRK09848        255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV--S---VWSLPVALVALAIA  329 (448)
T ss_pred             EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc--C---chhHHHHHHHHHHH
Confidence            356678776555544444344444 48899999999999999999999888888766531  1   12355555556677


Q ss_pred             HhchhhhhhhHHHHHhhccc--------CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          117 TNSSAWLGTAVLVTNMRNFP--------LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       117 g~g~g~~~~~~~~~~~~~Fp--------~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      |+|.+...........+.-|        +++|...|+......+|.++.+.+...++
T Consensus       330 g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l  386 (448)
T PRK09848        330 SIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL  386 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78877766665555555543        23589999988887788888766655443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.09  E-value=9e-05  Score=76.23  Aligned_cols=150  Identities=16%  Similarity=0.121  Sum_probs=103.3

Q ss_pred             HHHHhC----CCHHHHHH-HHHHHHHHhhccccccccccc-cCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHH
Q 013969           38 LKSVLG----FNQHQLTM-LGVANDIGENVGLLPGLASNK-FPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWI  111 (433)
Q Consensus        38 l~~~~g----~s~~~~~~-i~~~~~~~~~~~~~~G~l~Dr-~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~  111 (433)
                      +..+++    +|++++.- ++....+.....+++||++|| .|+|+++..|++++.+|++++....  .   .....+++
T Consensus        48 l~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~--~---~~~~gl~i  122 (498)
T COG3104          48 LYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS--V---SGPGGLYI  122 (498)
T ss_pred             HHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc--c---ccccHHHH
Confidence            444555    99998865 555555555669999999999 6999999999999999999776521  0   12345566


Q ss_pred             HHHHHHhchhhhhhhHHHHHhhcccC---CchhHHHHHHhhhhhHHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHHHHH
Q 013969          112 ALCVATNSSAWLGTAVLVTNMRNFPL---SRGTVAGILKGYGGLSAAVFTEIYNMLL-HNSSSKLLLVLAVGVPAVCLVM  187 (433)
Q Consensus       112 ~~~l~g~g~g~~~~~~~~~~~~~Fp~---~RG~a~gi~~~~~glg~~i~~~l~~~~~-~~~~~~~l~~~a~~~~~v~l~~  187 (433)
                      ...+.++|+|+.=....+.+.+.+|+   ||=.+.++.-.+-++|+.+ +|+...++ ..-.+..-+.++.+.-..+++.
T Consensus       123 ~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~-~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~  201 (498)
T COG3104         123 GLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLI-APIITGLLAINYGWHVGFGLAAVGMIIGLVI  201 (498)
T ss_pred             HHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHH-HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence            55566689998877778889999973   3666666666666788755 44444444 3333445555666666666766


Q ss_pred             Hhhccc
Q 013969          188 MYFVRP  193 (433)
Q Consensus       188 ~~~~r~  193 (433)
                      .++.|.
T Consensus       202 f~~~~r  207 (498)
T COG3104         202 FLLGRR  207 (498)
T ss_pred             HHHccc
Confidence            666654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.08  E-value=0.0004  Score=72.70  Aligned_cols=74  Identities=16%  Similarity=0.220  Sum_probs=57.4

Q ss_pred             CcHHHHhhhhhHHHHHHHHHhhcccceeeecchhhHHH-hhcCCcc--chhHHHHHHhHHHHhhhcccchHHHHHhh
Q 013969          342 FKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGI-AQGVHDT--TILLSLFSFCNFVGRLGGGVVSEHFVRLV  415 (433)
Q Consensus       342 ~t~~~~l~t~~Fwll~~~~~~~~g~g~~~i~n~~~i~~-s~G~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~~  415 (433)
                      .|+++.-|.|+.+.+.++.++-.-...+++...+.+++ .+|++..  ....-+..+..++|-+++|++.||++.|.
T Consensus       272 ~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~  348 (477)
T PF11700_consen  272 RTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKT  348 (477)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence            46778878888888888877766555556666666666 4588876  45667788999999999999999999983

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.96  E-value=0.00052  Score=70.34  Aligned_cols=169  Identities=14%  Similarity=0.028  Sum_probs=85.8

Q ss_pred             hhhhhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 013969           26 GNAYNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVES  103 (433)
Q Consensus        26 g~~y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~  103 (433)
                      ...+.+..+.|. +++.+|++..+.++.......+... ..+.+++.+|.+.++....+..+..+|..++....... +.
T Consensus       232 ~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~-~~  310 (413)
T PRK15403        232 IPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLW-PH  310 (413)
T ss_pred             HHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHc-cc
Confidence            345566666676 4667899999999866544445443 56667765444444443333333333433332211001 11


Q ss_pred             hhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc--CCchhHHHHHHhhhhhHHHHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 013969          104 LPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP--LSRGTVAGILKGYGGLSAAVFTEIYNMLLHNS-SSKLLLVLAVGV  180 (433)
Q Consensus       104 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~-~~~~l~~~a~~~  180 (433)
                       +++..++..++.++|.+..+.....  ..|++  ..+|++.++.......+..+.+.....+.... ...+.....++.
T Consensus       311 -~~~~~~~~~~l~~~G~~~~~p~~~~--~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  387 (413)
T PRK15403        311 -VWLWSVLGTSLYAFGIGLIFPTLFR--FTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAG  387 (413)
T ss_pred             -cHHHHHHHHHHHHHHHHHHhHHHHH--HHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence             2333344555666677666544433  23454  34899999876665555555555544443332 333333333333


Q ss_pred             HHHHHHHHhhcccCCCCC
Q 013969          181 PAVCLVMMYFVRPCTPAS  198 (433)
Q Consensus       181 ~~v~l~~~~~~r~~~~~~  198 (433)
                      ++.........|.+++++
T Consensus       388 ~~~~~~~~~~~~~~~~~~  405 (413)
T PRK15403        388 VIVVFTLAGLLNRVRQHQ  405 (413)
T ss_pred             HHHHHHHHHHHhhhhhhh
Confidence            333334444445554443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.96  E-value=0.00021  Score=72.90  Aligned_cols=45  Identities=18%  Similarity=0.117  Sum_probs=33.7

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHH
Q 013969           38 LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIG   82 (433)
Q Consensus        38 l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig   82 (433)
                      ++++-|+|.+|+|.+.++..+... .+|+.|.+.||.|.||-++.-
T Consensus        34 L~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~   79 (412)
T PF01306_consen   34 LTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWF   79 (412)
T ss_dssp             HHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHH
T ss_pred             HccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHH
Confidence            567789999999998877777765 599999999999977755433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.93  E-value=0.00022  Score=73.33  Aligned_cols=151  Identities=17%  Similarity=0.157  Sum_probs=97.4

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 013969           38 LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVA  116 (433)
Q Consensus        38 l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  116 (433)
                      .+..+|.+ ...+.+.....+... ..++.+++.||+|+|+++..+.++.+++.+.+++...     .+.+.+++..++.
T Consensus       252 ~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~l~  325 (428)
T PF13347_consen  252 FTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP-----GSPWLVLILFILA  325 (428)
T ss_pred             HHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHh
Confidence            35556655 445555555556654 5899999999999999999999999999888776421     2367777778888


Q ss_pred             HhchhhhhhhHHHHHhhccc--------CCchhHHHHHHhhhhhHHHHHHHHHHHHhc-----CC--------hhHHHHH
Q 013969          117 TNSSAWLGTAVLVTNMRNFP--------LSRGTVAGILKGYGGLSAAVFTEIYNMLLH-----NS--------SSKLLLV  175 (433)
Q Consensus       117 g~g~g~~~~~~~~~~~~~Fp--------~~RG~a~gi~~~~~glg~~i~~~l~~~~~~-----~~--------~~~~l~~  175 (433)
                      |++.+..+.......++..+        ++.|...|+.....-++.++.+.+...++.     .+        ....-..
T Consensus       326 gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~~~~q~~~~~~~i~~~  405 (428)
T PF13347_consen  326 GIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDANAAVQSASALSGIRIL  405 (428)
T ss_pred             HhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCCcCcCCHHHHHHHHHH
Confidence            88888777666666666554        224777777665555666555554444331     11        1233444


Q ss_pred             HHHHHHHHHHHHHhhcccC
Q 013969          176 LAVGVPAVCLVMMYFVRPC  194 (433)
Q Consensus       176 ~a~~~~~v~l~~~~~~r~~  194 (433)
                      .+.+|++..+++..+++..
T Consensus       406 ~~~~p~~~~~~~~i~~~~y  424 (428)
T PF13347_consen  406 FSIVPAIFLLLAIIFMRFY  424 (428)
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            4555555555555555443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.83  E-value=0.00077  Score=69.88  Aligned_cols=155  Identities=14%  Similarity=0.057  Sum_probs=104.1

Q ss_pred             ccCCCCCChHhHHHHHHHHHHhhh---hhhhhccHHHHHHH--hCCCHHHHHHHHHHHHHHhh-ccccccccccccCc-h
Q 013969            4 LKAGSRPPWVGLGAAVWVQIAAGN---AYNFPLYSHSLKSV--LGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPP-W   76 (433)
Q Consensus         4 ~~~~~~~~w~~l~~~~l~~~~~g~---~y~~s~~~~~l~~~--~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~-r   76 (433)
                      .++..+.+|+.+..+.+.++..+.   +|.-+. -| +.++  .+-+.+..|++..+..++.. .++..|+...|.|. |
T Consensus        25 ~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~-wp-Yl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k  102 (488)
T KOG2325|consen   25 PLDERKTNWRSIYLALLNSFLVAVQFSIYLTSM-WP-YLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVK  102 (488)
T ss_pred             cccccCCchHhHHHHHHHHHHHhhhheEEEeec-ch-hhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcc
Confidence            445667889888777776655443   222222 23 3444  66777778887776777774 69999999999986 8


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHH--HhhcccCCchhHHHHHHhhhhhHH
Q 013969           77 LVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVT--NMRNFPLSRGTVAGILKGYGGLSA  154 (433)
Q Consensus        77 ~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~--~~~~Fp~~RG~a~gi~~~~~glg~  154 (433)
                      +.++.|.++..+|.+++.. ..... +..-|.+.+.+++.|+|.+..  +..+.  ..+..++.|-+|.+....++-+|.
T Consensus       103 ~Pli~s~ii~~~g~llY~~-l~~~~-~~~~y~mL~~R~l~Gvg~~n~--a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~  178 (488)
T KOG2325|consen  103 KPLIVSFLIAIIGNLLYLA-LAYVP-NGVKYLMLVARILTGVGVGNF--AVLRAYIADASTVEDRPRAFAATSGGFVLGI  178 (488)
T ss_pred             cCHHHHHHHHHHHHHHHHH-HHhcc-cchHHHHHHHHHHcCcCcccH--HHHHHHHHhccCccchHHHHHHhhhHHHHHH
Confidence            8899999999999987733 22322 214566777899999887633  33333  344578888888888777776666


Q ss_pred             HHHHHHHHHHh
Q 013969          155 AVFTEIYNMLL  165 (433)
Q Consensus       155 ~i~~~l~~~~~  165 (433)
                      .+.+ ....+|
T Consensus       179 ilGp-~~q~~f  188 (488)
T KOG2325|consen  179 ILGP-TIQLAF  188 (488)
T ss_pred             HHhH-HHHHHH
Confidence            5554 444444

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.79  E-value=0.00017  Score=75.85  Aligned_cols=132  Identities=9%  Similarity=0.052  Sum_probs=90.0

Q ss_pred             hccccccccccccCchH-------HHHHHHHHHHHHHHHHHH---HHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHH
Q 013969           61 NVGLLPGLASNKFPPWL-------VLFIGSLACFFGYGVLWL---AVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVT  130 (433)
Q Consensus        61 ~~~~~~G~l~Dr~G~r~-------~~~ig~~l~~~g~~~~~~---~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~  130 (433)
                      .++|+.|++.||+|+|+       -+.+|.++.+++++.++.   .........++|.+....++.|+|.++...+.+..
T Consensus       324 i~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~  403 (489)
T PRK10207        324 VASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAM  403 (489)
T ss_pred             HHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            45788899999999997       377888888888765431   11111111245666666777889999888888999


Q ss_pred             HhhcccCC-chhHHHHHHhhhhhHHHHHHHHHHHHhc-C----------ChhHHHHHHHHHHHHHHHHHHhhcc
Q 013969          131 NMRNFPLS-RGTVAGILKGYGGLSAAVFTEIYNMLLH-N----------SSSKLLLVLAVGVPAVCLVMMYFVR  192 (433)
Q Consensus       131 ~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~~~~-~----------~~~~~l~~~a~~~~~v~l~~~~~~r  192 (433)
                      +.+.-|++ +|.++|+.....++|+.+...+.+..-. .          ...+++..++++.++++++.....|
T Consensus       404 ~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~  477 (489)
T PRK10207        404 IAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP  477 (489)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999965 9999999998888999888766654321 1          1235555566555555554444333

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.74  E-value=0.00079  Score=64.70  Aligned_cols=146  Identities=17%  Similarity=0.144  Sum_probs=89.6

Q ss_pred             CChHhHHHHHHHHHHhhhhhhhhccHHH-HHHHhCCCHHHHHHHHH-HHHHHhhccccccccccccCchHHHHHHHHHHH
Q 013969           10 PPWVGLGAAVWVQIAAGNAYNFPLYSHS-LKSVLGFNQHQLTMLGV-ANDIGENVGLLPGLASNKFPPWLVLFIGSLACF   87 (433)
Q Consensus        10 ~~w~~l~~~~l~~~~~g~~y~~s~~~~~-l~~~~g~s~~~~~~i~~-~~~~~~~~~~~~G~l~Dr~G~r~~~~ig~~l~~   87 (433)
                      .-|...+.|++-....-..|..+   |- ++++||+|+.+.+.+.+ ...+....+|+.|.+.||+|.+.....++.+..
T Consensus       265 pfw~~~iicv~yyva~fPFi~lg---~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~t  341 (459)
T KOG4686|consen  265 PFWVLVIICVLYYVAWFPFITLG---PMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILT  341 (459)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhh---HHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHH
Confidence            34666555555332222233322   22 59999999999988644 444444569999999999999998888777655


Q ss_pred             H-HHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCC-chhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969           88 F-GYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLS-RGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus        88 ~-g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      + +-.++.+...    + ++..+    .+.|+..++.-.+.-..++...|++ -|+|-|...+-.++|-++.+.+...+.
T Consensus       342 l~~H~~l~Ft~l----s-Py~~m----~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~  412 (459)
T KOG4686|consen  342 LLGHSGLFFTFL----S-PYTSM----TFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIA  412 (459)
T ss_pred             HHHhhhHHhhhc----c-HHHHH----HHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheee
Confidence            5 4444433221    1 12222    2334333332222224456667865 899999999999999887665555555


Q ss_pred             cC
Q 013969          166 HN  167 (433)
Q Consensus       166 ~~  167 (433)
                      ++
T Consensus       413 d~  414 (459)
T KOG4686|consen  413 DG  414 (459)
T ss_pred             cC
Confidence            43

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.72  E-value=0.00039  Score=70.23  Aligned_cols=157  Identities=17%  Similarity=0.159  Sum_probs=90.8

Q ss_pred             hhhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHhhc-ccccccccccc--CchHHHHHHHHHHHH-HHHHHHHHHhcccC
Q 013969           28 AYNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKF--PPWLVLFIGSLACFF-GYGVLWLAVSRTVE  102 (433)
Q Consensus        28 ~y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~--G~r~~~~ig~~l~~~-g~~~~~~~~~~~~~  102 (433)
                      -|...-+.|- +.|+.|+|..++++..+..-++.+. .+++|+++||.  |+|..+.+...+... +...++..     +
T Consensus       268 R~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~-----~  342 (448)
T COG2271         268 RYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA-----P  342 (448)
T ss_pred             HHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC-----C
Confidence            4555555665 5888999999999977777777764 89999999994  788766555544433 44433331     1


Q ss_pred             chhHHHHHHHHHHHHhchhhhhhhHH---HHHhhcccCC-chhHHHHHHhhhhh-HHHHHHHHHHHHhcC-ChhHHHHHH
Q 013969          103 SLPYWLLWIALCVATNSSAWLGTAVL---VTNMRNFPLS-RGTVAGILKGYGGL-SAAVFTEIYNMLLHN-SSSKLLLVL  176 (433)
Q Consensus       103 ~~~~~~l~~~~~l~g~g~g~~~~~~~---~~~~~~Fp~~-RG~a~gi~~~~~gl-g~~i~~~l~~~~~~~-~~~~~l~~~  176 (433)
                      +.++++...+..+.|+   +.|.|.+   ....+.-|++ -|+|.|++-.+.-+ |++..........+. +|...+.++
T Consensus       343 ~~~~~l~~~~l~~iGf---~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~  419 (448)
T COG2271         343 NGSYLLDAILLFIIGF---LIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVL  419 (448)
T ss_pred             CccHHHHHHHHHHHHH---HHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHH
Confidence            2234554445555553   2344442   2234445876 89999998766667 444433333333333 454444444


Q ss_pred             HHHHHHHHHHHHhhcc
Q 013969          177 AVGVPAVCLVMMYFVR  192 (433)
Q Consensus       177 a~~~~~v~l~~~~~~r  192 (433)
                      .+..++..++...+.+
T Consensus       420 ~~~a~l~~lll~~~~~  435 (448)
T COG2271         420 SIAALLAILLLLPVWN  435 (448)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            4444444444444443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.69  E-value=0.00061  Score=71.85  Aligned_cols=136  Identities=15%  Similarity=0.084  Sum_probs=98.1

Q ss_pred             hhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCch
Q 013969           26 GNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESL  104 (433)
Q Consensus        26 g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~  104 (433)
                      ...+...++.|.+.+..+++..+++.+.+...+... .-+..|++.|+...++.......+...|...+.....     .
T Consensus       312 ~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~-----~  386 (509)
T KOG2504|consen  312 LGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA-----T  386 (509)
T ss_pred             HHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh-----c
Confidence            345666778888888999999999997666666665 4799999999999544444433333334333333222     2


Q ss_pred             hHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          105 PYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       105 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      +++.++.+.++.|+..|....-...++.+..+ ++-..+.|+.....|+++.+.+|+...+.+
T Consensus       387 ~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d  449 (509)
T KOG2504|consen  387 TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYD  449 (509)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeee
Confidence            47788888888888777654444456788887 677999999999999999999999986554

>TIGR00788 fbt folate/biopterin transporter

Probab=97.68  E-value=0.00017  Score=75.37  Aligned_cols=126  Identities=16%  Similarity=-0.011  Sum_probs=91.7

Q ss_pred             HHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcc---cCchhHHHHHHHHHH
Q 013969           40 SVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRT---VESLPYWLLWIALCV  115 (433)
Q Consensus        40 ~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~---~~~~~~~~l~~~~~l  115 (433)
                      +.+|+++.+++.+.....++.. .....+++.+|++.|+++.++.++.+++.+.........   ..-++.+.+....++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            4689999999997666666665 488899999999999999999999988775432111110   000112223334566


Q ss_pred             HHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          116 ATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       116 ~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      .+++.++.+.+....+++.-|+ .+|+..|+..+..++|..+.+.+...+.
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~  411 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLM  411 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777778888888999999985 5999999999999999888875444443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.64  E-value=0.0011  Score=69.98  Aligned_cols=127  Identities=13%  Similarity=0.123  Sum_probs=87.7

Q ss_pred             cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcc--cCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCC-c
Q 013969           63 GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRT--VESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLS-R  139 (433)
Q Consensus        63 ~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~--~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~-R  139 (433)
                      ....+++.||+++++.+.+|.++.++++..+.......  ....+.|++....++.|+|..+........+.+.-|++ |
T Consensus       337 ~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~r  416 (500)
T PRK09584        337 AAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLM  416 (500)
T ss_pred             HHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHH
Confidence            34458888889999999999999999998876532210  00123455556777788888888888888899999965 9


Q ss_pred             hhHHHHHHhhhhhHHHHHHHHHHHHh-c----------CChhHHHHHHHHHHHHHHHHHHh
Q 013969          140 GTVAGILKGYGGLSAAVFTEIYNMLL-H----------NSSSKLLLVLAVGVPAVCLVMMY  189 (433)
Q Consensus       140 G~a~gi~~~~~glg~~i~~~l~~~~~-~----------~~~~~~l~~~a~~~~~v~l~~~~  189 (433)
                      |+++|+.....++|+.+..++.+..- +          .....++..++++.++++++...
T Consensus       417 g~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        417 GFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988777788877777765322 1          01345666666655544444433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.59  E-value=0.0031  Score=65.27  Aligned_cols=119  Identities=8%  Similarity=0.063  Sum_probs=76.0

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHh-hccccccccccc----cCchHHH-HHHHHHHHHHHHHHHHHHhcccCchhHHHHHH
Q 013969           38 LKSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASNK----FPPWLVL-FIGSLACFFGYGVLWLAVSRTVESLPYWLLWI  111 (433)
Q Consensus        38 l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr----~G~r~~~-~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~  111 (433)
                      +.+.+|++...++.+..+.=+.- ..-|+.|.+.||    +|+||.. +.|++-+++.+.+++..- +.....+....++
T Consensus        39 YTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p-~~~~~~k~~ya~v  117 (467)
T COG2211          39 YTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITP-DFSMTGKLIYALV  117 (467)
T ss_pred             HhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCC-CcccCcchHHHHH
Confidence            58899999999998666555554 458999999997    7877654 556577777666655421 1110112444445


Q ss_pred             HHHHHHhchhhhhhhHHHHHhhcc--cCCchhHHHHHHhhhhhHHHHH
Q 013969          112 ALCVATNSSAWLGTAVLVTNMRNF--PLSRGTVAGILKGYGGLSAAVF  157 (433)
Q Consensus       112 ~~~l~g~g~g~~~~~~~~~~~~~F--p~~RG~a~gi~~~~~glg~~i~  157 (433)
                      -..+.+++..+++.|--+...+.-  |++|-+..+.-..+.++|..+.
T Consensus       118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~  165 (467)
T COG2211         118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLV  165 (467)
T ss_pred             HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566676666666555555554  4568888777666665665444

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.54  E-value=1.7e-05  Score=84.16  Aligned_cols=122  Identities=18%  Similarity=0.133  Sum_probs=2.2

Q ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccC---------
Q 013969           33 LYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVE---------  102 (433)
Q Consensus        33 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~---------  102 (433)
                      ....+++++|+++.+|.+++.+...++.. +.++..++.+|.-+-|.+.+|.+++++|.+++++  -|+..         
T Consensus        24 ~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l--Phf~~~~y~~~~~~  101 (539)
T PF03137_consen   24 SSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL--PHFLSGPYSYEEAS  101 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc--cHhhcCCCcccccc
Confidence            34457899999999999999999999985 4888899998877778888999999999888754  11100         


Q ss_pred             ----------------------------------chh--HHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHH
Q 013969          103 ----------------------------------SLP--YWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGI  145 (433)
Q Consensus       103 ----------------------------------~~~--~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi  145 (433)
                                                        +.+  ++.+++..++.|+|....|+-..+.+=++-++ +-+.-+|+
T Consensus       102 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi  181 (539)
T PF03137_consen  102 NSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGI  181 (539)
T ss_dssp             --------------------------------------------------SSS---------------------------
T ss_pred             ccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhh
Confidence                                              000  12223356667777776777667767666653 35555666


Q ss_pred             HHhhhhhHHHH
Q 013969          146 LKGYGGLSAAV  156 (433)
Q Consensus       146 ~~~~~glg~~i  156 (433)
                      ..+...+|.++
T Consensus       182 ~~~~~~lGPa~  192 (539)
T PF03137_consen  182 LYAMSILGPAL  192 (539)
T ss_dssp             -----------
T ss_pred             hhHHhhccHHH
Confidence            55554444433

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.54  E-value=0.0015  Score=68.22  Aligned_cols=118  Identities=9%  Similarity=-0.024  Sum_probs=70.5

Q ss_pred             CHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhh
Q 013969           45 NQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWL  123 (433)
Q Consensus        45 s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~  123 (433)
                      +....+.+.....+... ..++.|++.||+|+|+++.++.++..++.+.+......  +..+.+.+.+..++.|++.+..
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~l~g~~~~~~  341 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA--APHNALLIVIAGILLNIGTALF  341 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHHHHHH
Confidence            44445555544444444 47889999999999999998888777666554331111  1123455555566677777766


Q ss_pred             hhhHHHHHhhc-----cc--CC-chhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969          124 GTAVLVTNMRN-----FP--LS-RGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus       124 ~~~~~~~~~~~-----Fp--~~-RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                      +......+.+.     ++  +| .|...|......-+|.++.+.+...+
T Consensus       342 ~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~  390 (473)
T PRK10429        342 WVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV  390 (473)
T ss_pred             HHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65555555555     33  22 35566666555556666655444443

>PRK09669 putative symporter YagG; Provisional

Probab=97.53  E-value=0.0022  Score=66.28  Aligned_cols=109  Identities=13%  Similarity=0.013  Sum_probs=65.5

Q ss_pred             HHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHH
Q 013969           52 LGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVT  130 (433)
Q Consensus        52 i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~  130 (433)
                      +.....+.... .++.+++.||+|+|+...++.+...++...+.. ..    ..+.+.+++..++.|++.+.........
T Consensus       269 ~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~i~g~~~~~~~~~~~am  343 (444)
T PRK09669        269 FLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFF-IP----PSNVWLIFALNILFNFIQNLTTPLQWSM  343 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-hC----cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43444444443 678899999999999999888766654433222 11    1235555556667777777666555566


Q ss_pred             Hhhccc-------CC-chhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          131 NMRNFP-------LS-RGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       131 ~~~~Fp-------~~-RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      +.+..+       +| .|...|+......+|.++.+.+...++
T Consensus       344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll  386 (444)
T PRK09669        344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWIL  386 (444)
T ss_pred             HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666553       22 466667665555566655554444433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.47  E-value=0.0079  Score=60.86  Aligned_cols=156  Identities=16%  Similarity=0.087  Sum_probs=101.3

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHhhccccccccccccC-----chHHHHHHHH-HHHHHHHHHHHHH--hcc-----cCch
Q 013969           38 LKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFP-----PWLVLFIGSL-ACFFGYGVLWLAV--SRT-----VESL  104 (433)
Q Consensus        38 l~~~~g~s~~~~~~i~~~~~~~~~~~~~~G~l~Dr~G-----~r~~~~ig~~-l~~~g~~~~~~~~--~~~-----~~~~  104 (433)
                      +..|++++..-++.....-.+....-+..|..+|+.+     +|...+++.. +.+.|........  -..     ....
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~   85 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF   85 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence            5678888877777755555555566888999999999     8877766554 4444444433211  111     0011


Q ss_pred             hHHHHH--HHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhcC-Chh---HHHHHHH
Q 013969          105 PYWLLW--IALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSS---KLLLVLA  177 (433)
Q Consensus       105 ~~~~l~--~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~---~~l~~~a  177 (433)
                      ..+...  +...+.|+|.+..-++.+.++.+.-| ++|+++.+++-...=+|..+.+.++..++++ ...   ..+...+
T Consensus        86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a  165 (403)
T PF03209_consen   86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVA  165 (403)
T ss_pred             HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHH
Confidence            233322  24556788888888888999999997 5799999999888767777777777777764 333   3444455


Q ss_pred             HHHHHHHHHHHhhccc
Q 013969          178 VGVPAVCLVMMYFVRP  193 (433)
Q Consensus       178 ~~~~~v~l~~~~~~r~  193 (433)
                      ++..++.+++.+-+.+
T Consensus       166 ~i~~~l~~ia~wg~E~  181 (403)
T PF03209_consen  166 LIALLLNLIALWGQEP  181 (403)
T ss_pred             HHHHHHHHHHHHhccc
Confidence            5555556666655543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.42  E-value=0.0023  Score=66.95  Aligned_cols=126  Identities=13%  Similarity=0.049  Sum_probs=88.7

Q ss_pred             ccccccc-cCchHHH--HHHHHHHHHHHHHHHHHHhcccC---chhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-C
Q 013969           66 PGLASNK-FPPWLVL--FIGSLACFFGYGVLWLAVSRTVE---SLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-S  138 (433)
Q Consensus        66 ~G~l~Dr-~G~r~~~--~ig~~l~~~g~~~~~~~~~~~~~---~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~  138 (433)
                      ..++.|| .+++...  .+|.++.++++..+.... ....   ..++|.+....++.++|-.+..+.......+.-|+ .
T Consensus       336 ~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~-~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~  414 (475)
T TIGR00924       336 WTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASI-WFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL  414 (475)
T ss_pred             HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH
Confidence            4466666 5556655  789999988888765421 1100   12467777777788888888877778888999996 5


Q ss_pred             chhHHHHHHhhhhhHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHHHHHhhcc
Q 013969          139 RGTVAGILKGYGGLSAAVFTEIYNMLLH-NSSSKLLLVLAVGVPAVCLVMMYFVR  192 (433)
Q Consensus       139 RG~a~gi~~~~~glg~~i~~~l~~~~~~-~~~~~~l~~~a~~~~~v~l~~~~~~r  192 (433)
                      ||+.+|+.....++|..+.+.+...... .++..+...++++.+++.++..+..|
T Consensus       415 ~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       415 MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888777765543 35666667777766666665555444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.40  E-value=0.0034  Score=66.29  Aligned_cols=153  Identities=12%  Similarity=0.112  Sum_probs=85.4

Q ss_pred             ChHhHHHHHHHHHH--hhhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHh-hccccccccccccCchHHHHHHHHHHH
Q 013969           11 PWVGLGAAVWVQIA--AGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASNKFPPWLVLFIGSLACF   87 (433)
Q Consensus        11 ~w~~l~~~~l~~~~--~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~l~~   87 (433)
                      .+..+..+++++..  ......+-.|.+++-+..|.+... ...+....+.. ....+++.+.||+|||++++.|...+.
T Consensus       292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~  370 (513)
T KOG0254|consen  292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMS  370 (513)
T ss_pred             hHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHH
Confidence            34444444444322  222344456777877777776443 22222222222 234555899999999999999999999


Q ss_pred             HHHHHHHHHHhcccC------chhHHHHH-HHHHHHHhchhhhhhhHHHHHhhcccCC-chhHHHHHHhhhhhHHHHHHH
Q 013969           88 FGYGVLWLAVSRTVE------SLPYWLLW-IALCVATNSSAWLGTAVLVTNMRNFPLS-RGTVAGILKGYGGLSAAVFTE  159 (433)
Q Consensus        88 ~g~~~~~~~~~~~~~------~~~~~~l~-~~~~l~g~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~  159 (433)
                      ++..+++........      ....+.+. .+..+.....++. ..+-....+-||.+ |+++.++..+...+...+...
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g-~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~  449 (513)
T KOG0254|consen  371 ICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWG-PVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISF  449 (513)
T ss_pred             HHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccc-cchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHH
Confidence            988877654332110      11111111 1222222222221 11224678999955 999999988877666655554


Q ss_pred             HHHHHh
Q 013969          160 IYNMLL  165 (433)
Q Consensus       160 l~~~~~  165 (433)
                      .+....
T Consensus       450 ~~~~~~  455 (513)
T KOG0254|consen  450 FFPFIT  455 (513)
T ss_pred             HHHHHH
Confidence            444443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.39  E-value=0.0042  Score=63.70  Aligned_cols=126  Identities=6%  Similarity=-0.067  Sum_probs=78.6

Q ss_pred             hccHHHHHHHh--CCCHHHHHHHHHHHHHHh-hccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHH
Q 013969           32 PLYSHSLKSVL--GFNQHQLTMLGVANDIGE-NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWL  108 (433)
Q Consensus        32 s~~~~~l~~~~--g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~  108 (433)
                      ..+.+.+.++.  +.+....+...+...... ..-+++|++.||+++|+++.+..+...+..++...  ..     +...
T Consensus       252 ~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~--~~-----~~~~  324 (410)
T TIGR00885       252 WTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF--AG-----GHVG  324 (410)
T ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH--cC-----ChHH
Confidence            34445543333  444444443333222333 34788899999999999988888877776665443  11     1222


Q ss_pred             HHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          109 LWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       109 l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      + ....+.|...+.+|+.......+.++++...+.++..+.. +|++++|++...+.+
T Consensus       325 ~-~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~-~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       325 L-YCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI-IGGGIVPPLQGFIID  380 (410)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH-hccchHHHHHHHHHH
Confidence            2 2233455566667777788889999977555444544443 999999999988776

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.38  E-value=0.0015  Score=65.01  Aligned_cols=124  Identities=14%  Similarity=0.092  Sum_probs=73.9

Q ss_pred             ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCC-ch
Q 013969           62 VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLS-RG  140 (433)
Q Consensus        62 ~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~-RG  140 (433)
                      ..++.|++.||+|||++|....+++++..+++..+...+   .-...++..++....+-    .++.....+.||.. |+
T Consensus       397 GlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn---~~tvllf~arafisg~f----qvaYvYtPEVyPTavRa  469 (528)
T KOG0253|consen  397 GLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN---AYTVLLFTARAFISGAF----QVAYVYTPEVYPTAVRA  469 (528)
T ss_pred             chhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc---hhHHHHHHHHHHHhchh----eEEEEecCcccchhhhh
Confidence            367889999999999999999999988777665543221   11222333444433222    22224557899965 99


Q ss_pred             hHHHHHHhhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhcccC
Q 013969          141 TVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRPC  194 (433)
Q Consensus       141 ~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~l~~~a~~~~~v~l~~~~~~r~~  194 (433)
                      +++|...+..-+|+.+ +|++.....-...--+...+ .+.+++.++.++++..
T Consensus       470 tgvGtcSsmaRIggI~-~p~iA~~~e~s~sl~i~vy~-~~~ilagIavcffPiE  521 (528)
T KOG0253|consen  470 TGVGTCSSMARIGGIF-SPVIAMRAELSTSLPIFVYG-ALFILAGIAVCFFPIE  521 (528)
T ss_pred             cchhhhhhHHhhhhhh-hhHHHHHhccceeehHHHHH-HHHHHHHHHheeeeec
Confidence            9999988887788854 55555322222111122222 2334445555555543

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.32  E-value=0.0086  Score=56.01  Aligned_cols=121  Identities=25%  Similarity=0.200  Sum_probs=81.2

Q ss_pred             ccHHHHHHHhCCCH--HHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHH
Q 013969           33 LYSHSLKSVLGFNQ--HQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLL  109 (433)
Q Consensus        33 ~~~~~l~~~~g~s~--~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l  109 (433)
                      ...+.+..+++.+.  .+.++......++... .++.|.+.||+|+|+.+..+......+.......  .   +...+.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~   97 (338)
T COG0477          23 PALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA--P---NVGLALL   97 (338)
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC--c---cchHHHH
Confidence            34445566666555  3667766666666644 6899999999999988888887644453332221  1   1125566


Q ss_pred             HHHHHHHHhchhhhhhhHHHHHhhcccC--CchhHHHHHHhh-hhhHHHHHH
Q 013969          110 WIALCVATNSSAWLGTAVLVTNMRNFPL--SRGTVAGILKGY-GGLSAAVFT  158 (433)
Q Consensus       110 ~~~~~l~g~g~g~~~~~~~~~~~~~Fp~--~RG~a~gi~~~~-~glg~~i~~  158 (433)
                      .+.+.+.|++.+..+........+++|+  +|+...++.... ..+|..+.+
T Consensus        98 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (338)
T COG0477          98 LILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGP  149 (338)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666667877777777778889999996  799999988774 445554444

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.20  E-value=0.0062  Score=63.04  Aligned_cols=158  Identities=22%  Similarity=0.189  Sum_probs=103.2

Q ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHhhccccccccccccC-----chHHHHHHHHHHHHHHHHHHHHHhcccCchhHH
Q 013969           33 LYSHSLKSVLGFNQHQLTMLGVANDIGENVGLLPGLASNKFP-----PWLVLFIGSLACFFGYGVLWLAVSRTVESLPYW  107 (433)
Q Consensus        33 ~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~~~~~G~l~Dr~G-----~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~  107 (433)
                      ...+.+++++|++++|...+.....+...+-|+.|.+.|.+.     ||.-+++|.++..++...+... ....  .+..
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~-~~~~--~s~~   87 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL-PASE--SSAA   87 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc-cccc--chhh
Confidence            344558999999999999988877777778999999999975     5556667777776666555442 2211  1233


Q ss_pred             HHHHHHHHHHhchhhhhhhHHHHHhhc---ccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHH
Q 013969          108 LLWIALCVATNSSAWLGTAVLVTNMRN---FPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAV  183 (433)
Q Consensus       108 ~l~~~~~l~g~g~g~~~~~~~~~~~~~---Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v  183 (433)
                      ...++.++..+|..+.+..+=..+.|.   -|+.||.-.+.......+|+.+...+...+.+. +.+..+.+.+.++.+.
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~  167 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM  167 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence            344455666777777777765554444   465578877777777778887776666555543 3444445555666655


Q ss_pred             HHHHHhhccc
Q 013969          184 CLVMMYFVRP  193 (433)
Q Consensus       184 ~l~~~~~~r~  193 (433)
                      .+...+..++
T Consensus       168 ~~~~~~~~~e  177 (433)
T PF03092_consen  168 LIVALFLLEE  177 (433)
T ss_pred             HHHHHHhhhh
Confidence            5555555553

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.13  E-value=0.0012  Score=67.46  Aligned_cols=166  Identities=14%  Similarity=0.087  Sum_probs=101.6

Q ss_pred             HhHHHHHHHHH-HhhhhhhhhccHHHHHHHhCCCHHHHHH-----HHHHHH----HHhh-ccccccccccccCchHHHHH
Q 013969           13 VGLGAAVWVQI-AAGNAYNFPLYSHSLKSVLGFNQHQLTM-----LGVAND----IGEN-VGLLPGLASNKFPPWLVLFI   81 (433)
Q Consensus        13 ~~l~~~~l~~~-~~g~~y~~s~~~~~l~~~~g~s~~~~~~-----i~~~~~----~~~~-~~~~~G~l~Dr~G~r~~~~i   81 (433)
                      ..++.....++ .....|..++++..+-++.|+.+++-..     ..-...    .+.+ ..++...+.|+.||+++.+-
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            44555555554 3467899999999999988887765443     111111    1222 25667789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCchhHHHHHH-HHHHHHhchhhhhhhHHHHHhhcccCC-chhHHHHHHhhhhhHHHHHHH
Q 013969           82 GSLACFFGYGVLWLAVSRTVESLPYWLLWI-ALCVATNSSAWLGTAVLVTNMRNFPLS-RGTVAGILKGYGGLSAAVFTE  159 (433)
Q Consensus        82 g~~l~~~g~~~~~~~~~~~~~~~~~~~l~~-~~~l~g~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~  159 (433)
                      |.+++++.++.++....+......+..++. ..++.-+|-+   +......++.||.+ ||++-|+..+.-=+|+.+...
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~  460 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF  460 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence            999999887766554432221111222332 2333333331   22234568999966 999999987665577777665


Q ss_pred             HHHHHhc-----C-ChhHHHHHHHHHHH
Q 013969          160 IYNMLLH-----N-SSSKLLLVLAVGVP  181 (433)
Q Consensus       160 l~~~~~~-----~-~~~~~l~~~a~~~~  181 (433)
                      .+...-+     . ..+..+.+.+++..
T Consensus       461 ~F~~~t~~~yp~~~g~~~v~~i~~~~~~  488 (538)
T KOG0252|consen  461 GFLYLTDHNYPPNIGVRNVFIILAGCML  488 (538)
T ss_pred             HhhHhhhccCCccccchHHHHHHHHHHH
Confidence            5555544     2 23455555555443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.09  E-value=0.011  Score=64.20  Aligned_cols=130  Identities=14%  Similarity=0.100  Sum_probs=83.4

Q ss_pred             HHHHHHHhCCCHHHHHHH-HHHHHHHhhccccccccccc-cCchHHHHHHHHHHHHHHHHHHHHHhcccC-chhHHHHHH
Q 013969           35 SHSLKSVLGFNQHQLTML-GVANDIGENVGLLPGLASNK-FPPWLVLFIGSLACFFGYGVLWLAVSRTVE-SLPYWLLWI  111 (433)
Q Consensus        35 ~~~l~~~~g~s~~~~~~i-~~~~~~~~~~~~~~G~l~Dr-~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~-~~~~~~l~~  111 (433)
                      ...+.+.+|++.+++..+ .....+..+...++|+++|+ +|+++++.++.++..+|+.+++........ .......++
T Consensus        11 vlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~   90 (654)
T TIGR00926        11 VLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLL   90 (654)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHH
Confidence            334677899999988774 44444444569999999998 899999999999999999877652111000 001122333


Q ss_pred             HHHHHHhchhhhhhhHHHHHhhcccC-C---chhHHHHHHhhhhhHHHHHHHHHHHH
Q 013969          112 ALCVATNSSAWLGTAVLVTNMRNFPL-S---RGTVAGILKGYGGLSAAVFTEIYNML  164 (433)
Q Consensus       112 ~~~l~g~g~g~~~~~~~~~~~~~Fp~-~---RG~a~gi~~~~~glg~~i~~~l~~~~  164 (433)
                      ...+..+|.|..-.+......+.|++ +   |-....+.-.+.++|+.+.+++...+
T Consensus        91 gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l  147 (654)
T TIGR00926        91 GLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPIL  147 (654)
T ss_pred             HHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455567776665566777888863 2   44555555555567876665555543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=96.98  E-value=0.033  Score=55.54  Aligned_cols=162  Identities=17%  Similarity=0.093  Sum_probs=99.4

Q ss_pred             HhhhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHh-hccccccccccc-cCchHHHHHHHHHHHHHHHHHHHHHhccc
Q 013969           24 AAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASNK-FPPWLVLFIGSLACFFGYGVLWLAVSRTV  101 (433)
Q Consensus        24 ~~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr-~G~r~~~~ig~~l~~~g~~~~~~~~~~~~  101 (433)
                      -+...|+.-.+.|++-.+.|+|..+.+...+...+.. ..++..-.+.+| -..|+......+.+.+|++.+.+.-..  
T Consensus       220 qS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~--  297 (395)
T COG2807         220 QSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQ--  297 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhh--
Confidence            3556888888999998899999999998655555554 346666677775 455666666667777788877653111  


Q ss_pred             CchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC--CchhHHHHHHhhhhhHHHHHHHHHHHHhc--CChhHHHHHHH
Q 013969          102 ESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL--SRGTVAGILKGYGGLSAAVFTEIYNMLLH--NSSSKLLLVLA  177 (433)
Q Consensus       102 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~--~RG~a~gi~~~~~glg~~i~~~l~~~~~~--~~~~~~l~~~a  177 (433)
                         . +.+.  .++.|+|.|..+.-++..+....++  .-+.-.|+..+.--+=++..|.+...+.+  ++|..-+..++
T Consensus       298 ---~-~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~  371 (395)
T COG2807         298 ---L-PILW--ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLA  371 (395)
T ss_pred             ---H-HHHH--HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHH
Confidence               1 1111  3678888888887777777777653  23444444433322333444555555554  35555555555


Q ss_pred             HHHHHHHHHHHhhccc
Q 013969          178 VGVPAVCLVMMYFVRP  193 (433)
Q Consensus       178 ~~~~~v~l~~~~~~r~  193 (433)
                      .+.+++.+.+..+=|+
T Consensus       372 ~~~i~m~i~Gl~a~r~  387 (395)
T COG2807         372 LATLLMLIFGLRAGRN  387 (395)
T ss_pred             HHHHHHHHHHhhcchh
Confidence            5555555555444433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.97  E-value=0.015  Score=59.10  Aligned_cols=126  Identities=17%  Similarity=0.123  Sum_probs=69.7

Q ss_pred             hhhhhhccHHHHHHHhCCCHHHH----HHHHHHHHHH-hhccccccccccccCchHHHHHHHHHHHH-HHHHHHHHHhcc
Q 013969           27 NAYNFPLYSHSLKSVLGFNQHQL----TMLGVANDIG-ENVGLLPGLASNKFPPWLVLFIGSLACFF-GYGVLWLAVSRT  100 (433)
Q Consensus        27 ~~y~~s~~~~~l~~~~g~s~~~~----~~i~~~~~~~-~~~~~~~G~l~Dr~G~r~~~~ig~~l~~~-g~~~~~~~~~~~  100 (433)
                      +.+.|++|.......-|.+..+.    +...+...+. +..+|+.|.++|+.|+||...--....++ ..+.+++...+ 
T Consensus        34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~-  112 (438)
T COG2270          34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPG-  112 (438)
T ss_pred             eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCC-
Confidence            45667777655544544444433    2323333333 34699999999999999987655554444 33433432111 


Q ss_pred             cCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHH
Q 013969          101 VESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAV  156 (433)
Q Consensus       101 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i  156 (433)
                         ..++...++..+..++...........+.+..++ +-|+..++.-+.--+|+.+
T Consensus       113 ---s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i  166 (438)
T COG2270         113 ---SYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVI  166 (438)
T ss_pred             ---chHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchH
Confidence               1244444466666666665555556777777765 3455544432322255544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=96.97  E-value=6.5e-06  Score=84.85  Aligned_cols=162  Identities=18%  Similarity=0.192  Sum_probs=88.6

Q ss_pred             hhhhccHHHHHHHhCCCHHHHHHHHHHHHHHh-hccccccccccccCchHHHHHHHHHHHHHHHHHH--HHHhcccC-ch
Q 013969           29 YNFPLYSHSLKSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLW--LAVSRTVE-SL  104 (433)
Q Consensus        29 y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~--~~~~~~~~-~~  104 (433)
                      +....|.+.+.+..+.+..  ........+.. ...+++..+.||+|||++++++.++.++..+.+.  .......+ ..
T Consensus       270 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (451)
T PF00083_consen  270 NFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW  347 (451)
T ss_pred             ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3445566777777888776  11122212222 2356667999999999999999998887766553  10111100 00


Q ss_pred             hHHHHHH-HHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhcCCh-hHHHHHHHHHHH
Q 013969          105 PYWLLWI-ALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLHNSS-SKLLLVLAVGVP  181 (433)
Q Consensus       105 ~~~~l~~-~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~-~~~l~~~a~~~~  181 (433)
                      +.+.+.. .......+.+. .........|.||. .|+++.|+......+++.+.+.+...+.+... ..+..+.+.+..
T Consensus       348 ~~~~i~~~~l~~~~~~~g~-~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~  426 (451)
T PF00083_consen  348 SILSIVFLALFFAFFSLGW-GPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCL  426 (451)
T ss_pred             ccccceeeeeccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHH
Confidence            1222211 11111222221 12223566999995 49999999888776777776655555444322 344444444444


Q ss_pred             HHHHHHHhhccc
Q 013969          182 AVCLVMMYFVRP  193 (433)
Q Consensus       182 ~v~l~~~~~~r~  193 (433)
                      +..+...+++++
T Consensus       427 i~~i~~~~~lpE  438 (451)
T PF00083_consen  427 IAIIFVYFFLPE  438 (451)
T ss_pred             HHHhheeEEEee
Confidence            444444444444

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.80  E-value=0.005  Score=64.63  Aligned_cols=136  Identities=17%  Similarity=0.131  Sum_probs=83.7

Q ss_pred             hhhhhhhhccHHHHHHH-hCCCHHHHHHHHHHHHHHhhc-cccccccccc----cCchHHHHHHHHHHHH-HHHHHHHHH
Q 013969           25 AGNAYNFPLYSHSLKSV-LGFNQHQLTMLGVANDIGENV-GLLPGLASNK----FPPWLVLFIGSLACFF-GYGVLWLAV   97 (433)
Q Consensus        25 ~g~~y~~s~~~~~l~~~-~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr----~G~r~~~~ig~~l~~~-g~~~~~~~~   97 (433)
                      -...|+++.+.|.+.++ .|+|..+.+.+++...++.++ .+++|.+.||    +.+|........++.. |+..+... 
T Consensus       286 ~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~-  364 (495)
T KOG2533|consen  286 KLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAA-  364 (495)
T ss_pred             hhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence            35688899899987555 679999999988887777754 8999999999    6666666666655544 44433221 


Q ss_pred             hcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc--CCchhHHHHHHhhhhhHHHHHHHHHHHHhcC
Q 013969           98 SRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP--LSRGTVAGILKGYGGLSAAVFTEIYNMLLHN  167 (433)
Q Consensus        98 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp--~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~  167 (433)
                       .   .  ....+...+.+..+.+.....+..-...+..  .||-...++...+.+.++++.++++......
T Consensus       365 -~---~--~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap  430 (495)
T KOG2533|consen  365 -A---V--LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAP  430 (495)
T ss_pred             -c---c--chHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCc
Confidence             1   1  1112221122222222223333444555554  3466666666677788888888887765543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.65  E-value=0.028  Score=49.75  Aligned_cols=88  Identities=19%  Similarity=0.062  Sum_probs=65.8

Q ss_pred             ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-Cch
Q 013969           62 VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRG  140 (433)
Q Consensus        62 ~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG  140 (433)
                      ..++++.+.+++|+|+.+.+|.+...+-...+..        ++.|.++...++.|+|.+..+++.-..+.+.-.+ +|+
T Consensus        53 s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~--------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~  124 (156)
T PF05978_consen   53 SCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY--------PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIG  124 (156)
T ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHh
Confidence            3566788999999999999999987754332211        2356677788899999999998887888888764 589


Q ss_pred             hHHHHHHhhhhhHHHHH
Q 013969          141 TVAGILKGYGGLSAAVF  157 (433)
Q Consensus       141 ~a~gi~~~~~glg~~i~  157 (433)
                      +-.|+..+....+..+.
T Consensus       125 ~~~~ifw~i~~~s~i~G  141 (156)
T PF05978_consen  125 RNTGIFWAIFQSSLIFG  141 (156)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            98888777766655443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK11462 putative transporter; Provisional

Probab=96.61  E-value=0.091  Score=54.75  Aligned_cols=42  Identities=5%  Similarity=-0.194  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHH
Q 013969           50 TMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYG   91 (433)
Q Consensus        50 ~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~   91 (433)
                      +.+.....+... ..++++++.||+|.|++...+.....+..+
T Consensus       266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~  308 (460)
T PRK11462        266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISL  308 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            334444444443 478899999999999987765554444333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.58  E-value=0.036  Score=57.50  Aligned_cols=122  Identities=20%  Similarity=0.106  Sum_probs=80.9

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHH
Q 013969           39 KSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVAT  117 (433)
Q Consensus        39 ~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g  117 (433)
                      +-..|.+..+..........+.+. .++..++.+|+|+|++..++.++..+++.++++..     ..+.+.+++..++.+
T Consensus       264 ~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~-----~~~~~l~~~~~~i~~  338 (467)
T COG2211         264 TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP-----AGSVVLIVVALIIAG  338 (467)
T ss_pred             EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc-----CcchHHHHHHHHHHH
Confidence            334566555555555555555554 78899999999999999999999999999888743     124566666777777


Q ss_pred             hchhhhhhhHHHHH------hhcccCC--chhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          118 NSSAWLGTAVLVTN------MRNFPLS--RGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       118 ~g~g~~~~~~~~~~------~~~Fp~~--RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      +|.+..+...-..+      -||-..+  -|...|+..-..=+|.++...+....+
T Consensus       339 ~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L  394 (467)
T COG2211         339 VGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL  394 (467)
T ss_pred             HHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77776654443333      4565432  377666655555566666655554443

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.51  E-value=0.0064  Score=47.09  Aligned_cols=53  Identities=23%  Similarity=0.291  Sum_probs=43.4

Q ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHH
Q 013969           34 YSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLAC   86 (433)
Q Consensus        34 ~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~   86 (433)
                      |.+-..++.|+|..|++.+..+..+... ..|+.|.++||+|.++.++.+...+
T Consensus        22 fl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   22 FLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             hhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            4444566799999999998877767665 5899999999999999998877654

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.37  E-value=0.04  Score=57.55  Aligned_cols=161  Identities=16%  Similarity=0.155  Sum_probs=97.1

Q ss_pred             hhhhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCc---------hHHHHHHHHHHHHHHHHHHH
Q 013969           27 NAYNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPP---------WLVLFIGSLACFFGYGVLWL   95 (433)
Q Consensus        27 ~~y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~---------r~~~~ig~~l~~~g~~~~~~   95 (433)
                      ..|.+-.|.|. +++.+|++-.+.++++..-.+.+. +.+++|.++||.-.         |..-.++....++.++.+.+
T Consensus       273 ~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~  352 (466)
T KOG2532|consen  273 GFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAF  352 (466)
T ss_pred             HHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeee
Confidence            46777788888 588899999999999888888885 59999999999755         23333333333333332222


Q ss_pred             HHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcC----ChhH
Q 013969           96 AVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHN----SSSK  171 (433)
Q Consensus        96 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~----~~~~  171 (433)
                        .+.  ......+.++.+..+ ..|+......+.....=|++-+..+|+.+....+.+.+.|.+...+.++    .|+.
T Consensus       353 --~~~--~~~~~a~~~l~~~~~-~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~  427 (466)
T KOG2532|consen  353 --TSD--EHRLLAVILLTIAIG-LSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRI  427 (466)
T ss_pred             --cCC--CcchHHHHHHHHHHH-HcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHH
Confidence              111  112222222211111 1122222222333333688999999999998888888877777777743    3556


Q ss_pred             HHHHHHHHHHHHHHHHHhhcc
Q 013969          172 LLLVLAVGVPAVCLVMMYFVR  192 (433)
Q Consensus       172 ~l~~~a~~~~~v~l~~~~~~r  192 (433)
                      .+++.+++..+..++..++-+
T Consensus       428 VF~i~a~i~~~~~i~f~~f~s  448 (466)
T KOG2532|consen  428 VFLIAAGILIVGNIIFLFFGS  448 (466)
T ss_pred             HHHHHHHHHHHhchheeEeec
Confidence            666666665555544444433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=96.36  E-value=0.086  Score=53.31  Aligned_cols=144  Identities=13%  Similarity=0.055  Sum_probs=97.1

Q ss_pred             HHHHHHH-HHhhhhhhhhccHHHHHHH-hCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHH
Q 013969           16 GAAVWVQ-IAAGNAYNFPLYSHSLKSV-LGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGV   92 (433)
Q Consensus        16 ~~~~l~~-~~~g~~y~~s~~~~~l~~~-~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~   92 (433)
                      ..+.+.+ +-.|..-..+.+.+.+..+ .|.+..|.+.+.+....+... =+.+-++..|+-+.|.+...++...+-++.
T Consensus       239 ~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~  318 (422)
T COG0738         239 RLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLA  318 (422)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            3444444 4467666666677776555 889988888877776666654 456677888999999998877665554443


Q ss_pred             HHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhcCC
Q 013969           93 LWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNS  168 (433)
Q Consensus        93 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~  168 (433)
                      ..+  .+     +.+.++.. .+.|...+.+++.......+..|++-..+.+++.++ .+|+++.|++....-+..
T Consensus       319 ~~l--~~-----g~v~~~~l-~~ig~F~simfPTIfslal~~l~~~ts~~s~~l~ma-ivGGAiiP~l~G~i~d~~  385 (422)
T COG0738         319 VAL--IG-----GVVALYAL-FLIGLFNSIMFPTIFSLALKNLGEHTSVGSGLLVMA-IVGGAIIPPLQGVIADMF  385 (422)
T ss_pred             HHH--hc-----ChHHHHHH-HHHHHHhHHHHHHHHHHHHhccCccccccceeeeeh-eecchHHHHHHHHHHHhh
Confidence            333  22     24444432 345556777888888889999997655555555444 599999999998877643

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.25  E-value=0.026  Score=60.46  Aligned_cols=148  Identities=16%  Similarity=0.173  Sum_probs=93.8

Q ss_pred             hHHHHHHHHHHhhh-hhhhhccHHHH-HHHhCCCHH---HHHHHHHHHHHHhhc-cccccccccccCc-hHHHHHHHHHH
Q 013969           14 GLGAAVWVQIAAGN-AYNFPLYSHSL-KSVLGFNQH---QLTMLGVANDIGENV-GLLPGLASNKFPP-WLVLFIGSLAC   86 (433)
Q Consensus        14 ~l~~~~l~~~~~g~-~y~~s~~~~~l-~~~~g~s~~---~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~-r~~~~ig~~l~   86 (433)
                      .+.+.+++.+..|. .|....+-|+. ...|+-+..   +.++.+....++..+ +++.|.+.-++++ |..+++|.+++
T Consensus       311 ~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~  390 (599)
T PF06609_consen  311 GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLM  390 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence            34444444444554 56666666664 545655542   455665555565543 6777888776654 44556777776


Q ss_pred             HHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969           87 FFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      .+++-+++.. ..  ++  ....+.+.++.|+|.|+.-.++...++-.-|+ +-|++.|++.+...+|++++..++...+
T Consensus       391 ta~~Gama~~-~~--~n--~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  391 TAFCGAMAAV-RP--DN--KNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             HHHHHHHHHc-cC--CC--cchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            6555544432 11  12  22334567788888887766666655555674 5899999999999999999988888877


Q ss_pred             c
Q 013969          166 H  166 (433)
Q Consensus       166 ~  166 (433)
                      .
T Consensus       466 ~  466 (599)
T PF06609_consen  466 T  466 (599)
T ss_pred             H
Confidence            4

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.24  E-value=0.013  Score=46.24  Aligned_cols=68  Identities=21%  Similarity=0.204  Sum_probs=60.8

Q ss_pred             hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHH
Q 013969           28 AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWL   95 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~   95 (433)
                      .|.|+...|.++++.++|.++.+++.+...+|..+ .+...++.++..+|+.+.++.+...+....+.+
T Consensus         8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~   76 (85)
T PF06779_consen    8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL   76 (85)
T ss_pred             HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            67888899999999999999999999999999876 788899999999999999999998888876665

Note that many members are hypothetical proteins.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.24  E-value=0.11  Score=54.83  Aligned_cols=128  Identities=14%  Similarity=0.102  Sum_probs=80.7

Q ss_pred             cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCC-chh
Q 013969           63 GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLS-RGT  141 (433)
Q Consensus        63 ~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~-RG~  141 (433)
                      ....+.+.||+|||.....+.++..++++.+.......    ..+.......++..+.+..+........+.+|+. |..
T Consensus       367 ~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~  442 (521)
T KOG0255|consen  367 YFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDL----GGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNT  442 (521)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            44558999999999999999999999998776643221    1112333334444455555666678889999965 999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhcccC
Q 013969          142 VAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVRPC  194 (433)
Q Consensus       142 a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~l~~~a~~~~~v~l~~~~~~r~~  194 (433)
                      +.|...+..-+|+++.+.+....-.......+...+....+.++++..+++..
T Consensus       443 ~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet  495 (521)
T KOG0255|consen  443 AVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPET  495 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCccc
Confidence            99999888778876665554332221111111113555555555555555443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.09  E-value=0.018  Score=60.11  Aligned_cols=139  Identities=14%  Similarity=0.132  Sum_probs=91.5

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHH
Q 013969           39 KSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVAT  117 (433)
Q Consensus        39 ~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g  117 (433)
                      .|+.+-...-.+........+-+ +-++.++|..|+|.-+++.+|.....+=++.++.+       .+.|+..-.-++.|
T Consensus       398 led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-------~n~W~vLPieilqg  470 (618)
T KOG3762|consen  398 LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-------QNPWMVLPIEILQG  470 (618)
T ss_pred             HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-------cCchheeeHHHHHH
Confidence            44555333333322332223333 36788999999999999999988888776655542       24677766888999


Q ss_pred             hchhhhhhhHHHHHhhcccCC-chhHHHHHHhh-hhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHH
Q 013969          118 NSSAWLGTAVLVTNMRNFPLS-RGTVAGILKGY-GGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVC  184 (433)
Q Consensus       118 ~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~-~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~  184 (433)
                      +..+..|.+....+...-|++ |.++.|++.+. .|+|=.+.+.+...++.- +.+.++...++.+++++
T Consensus       471 it~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l  540 (618)
T KOG3762|consen  471 ITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTL  540 (618)
T ss_pred             HHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHH
Confidence            989999999999999999866 99999998654 455555555555555443 33444555555444433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.08  E-value=0.18  Score=51.26  Aligned_cols=111  Identities=16%  Similarity=0.174  Sum_probs=83.9

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHhhc-ccccccccc-ccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 013969           39 KSVLGFNQHQLTMLGVANDIGENV-GLLPGLASN-KFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVA  116 (433)
Q Consensus        39 ~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~D-r~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  116 (433)
                      .+.||+|.+|.+.++.....|... ....|++.. |.+++++..+|++...+++.+....  +...  +.|.+....++.
T Consensus       236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a--~~~~--~~~~~~~~~~l~  311 (403)
T PF03209_consen  236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA--GPLG--SPWLFRPGVFLL  311 (403)
T ss_pred             hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH--Hhcc--cchHHHHHHHHH
Confidence            678999999999888877778754 556777555 8999999999999988887765542  3222  356676677889


Q ss_pred             HhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhH
Q 013969          117 TNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLS  153 (433)
Q Consensus       117 g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg  153 (433)
                      |+|.|.....++..+.+.-+ ++.|+.+|.--....++
T Consensus       312 G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A  349 (403)
T PF03209_consen  312 GLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIA  349 (403)
T ss_pred             HHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHH
Confidence            99999888888888888885 67888888764444333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=95.63  E-value=0.068  Score=55.77  Aligned_cols=123  Identities=15%  Similarity=0.176  Sum_probs=76.5

Q ss_pred             hccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCc
Q 013969           61 NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSR  139 (433)
Q Consensus        61 ~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~R  139 (433)
                      +.++..|.+.||+|||..+.+..+...+.-+..-+.        .+|.+.+....++.  +..+......++..-. ++|
T Consensus        77 i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~--------~~~~~~~~~l~g~~--~~~~s~~~a~vadis~~~~R  146 (463)
T KOG2816|consen   77 ISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ--------GYWFFLLLGLSGGF--SAIFSVGFAYVADISSEEER  146 (463)
T ss_pred             HHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH--------HHHHhhhcccccch--hhhhhhhhhheeeccchhHH
Confidence            458999999999999999999988888766644331        13333322222221  2233444555666665 469


Q ss_pred             hhHHHHHHhhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH-Hhhccc
Q 013969          140 GTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVM-MYFVRP  193 (433)
Q Consensus       140 G~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~l~~~a~~~~~v~l~~-~~~~r~  193 (433)
                      -...|++.+.++++..+.+.+.....+.-.-.....++....++.++- .+++++
T Consensus       147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~E  201 (463)
T KOG2816|consen  147 SSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPE  201 (463)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccc
Confidence            999999999888888888777776665432233333444444343333 344443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=95.52  E-value=0.079  Score=55.27  Aligned_cols=120  Identities=23%  Similarity=0.323  Sum_probs=88.8

Q ss_pred             HHHHhCCCHHHHHHH-HHHHHHHhhcc-ccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHH
Q 013969           38 LKSVLGFNQHQLTML-GVANDIGENVG-LLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCV  115 (433)
Q Consensus        38 l~~~~g~s~~~~~~i-~~~~~~~~~~~-~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l  115 (433)
                      ++..++|+..+.+.+ +....++.... ...+.+...+|-|+++.+|.+.-.+....+++.       +..|+++...++
T Consensus       268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-------~~~w~~~~~~v~  340 (463)
T KOG2816|consen  268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-------TETWMMFAAGVV  340 (463)
T ss_pred             EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-------ccchhhhHHHHH
Confidence            578899999999974 44444444443 444578888999999999999999888877663       235777776665


Q ss_pred             HHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          116 ATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       116 ~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      .++ .+..++..-...+++-+ +++|++.++....-++++.+.+.+++.++
T Consensus       341 ~~~-~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  341 VAL-AGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             HHh-hcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence            543 34455555566777765 67999999999999899888888887765

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.15  E-value=0.81  Score=46.84  Aligned_cols=158  Identities=11%  Similarity=0.020  Sum_probs=99.0

Q ss_pred             hccHHHHHHH-hCCCHHHHHH-HHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHH
Q 013969           32 PLYSHSLKSV-LGFNQHQLTM-LGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWL  108 (433)
Q Consensus        32 s~~~~~l~~~-~g~s~~~~~~-i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~  108 (433)
                      +...|.+.+. .|++..|+.- +.-...-... +.++...+.|..|.|++++++++...+.+.++-+.       .+.+.
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~-------~sv~~   96 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG-------TSVLA   96 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------CcHHH
Confidence            3445556665 8999999976 6655555554 47889999999999999999999887777765431       23556


Q ss_pred             HHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHHH
Q 013969          109 LWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLHN--SSSKLLLVLAVGVPAVCL  185 (433)
Q Consensus       109 l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~--~~~~~l~~~a~~~~~v~l  185 (433)
                      +-+..+.-|++.+. ..+....+-..-| ++-=++.+...+..-+|-.+.+.+...+...  ..-..+..+++....+++
T Consensus        97 mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~  175 (412)
T PF01770_consen   97 MQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLAL  175 (412)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            65655666655532 2222233333335 3445566666666545544544555544442  233445567777777888


Q ss_pred             HHHhhcccCCCC
Q 013969          186 VMMYFVRPCTPA  197 (433)
Q Consensus       186 ~~~~~~r~~~~~  197 (433)
                      +..++++.+++.
T Consensus       176 ~~~~fLP~~~~S  187 (412)
T PF01770_consen  176 LIALFLPMPKRS  187 (412)
T ss_pred             HHHHHcCCCCcc
Confidence            888888876553

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK03612 spermidine synthase; Provisional

Probab=94.49  E-value=2.3  Score=45.24  Aligned_cols=153  Identities=14%  Similarity=0.011  Sum_probs=72.6

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHH---HHHHHHHHHHHHhcccCchhHHHHHHHH
Q 013969           38 LKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLA---CFFGYGVLWLAVSRTVESLPYWLLWIAL  113 (433)
Q Consensus        38 l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l---~~~g~~~~~~~~~~~~~~~~~~~l~~~~  113 (433)
                      +.-.+|-+..+.+.+.+....++.. +.++|++.++ ..|+...+-..+   ..+..+++.... ... ......++...
T Consensus        41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~~~~~e~~i~l~~~~~~~ll~~~~-~~~-~~~~~~~~~~~  117 (521)
T PRK03612         41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAGFVAVELLLALLGGLSALILYAAF-AFQ-GLSRLLLYVLV  117 (521)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHH
Confidence            4556787777777766666677754 6777776533 233322221111   111111111111 100 00011112223


Q ss_pred             HHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHh-c-CChhHHHHHHHHHHHHHHHHHHhhc
Q 013969          114 CVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLL-H-NSSSKLLLVLAVGVPAVCLVMMYFV  191 (433)
Q Consensus       114 ~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~-~-~~~~~~l~~~a~~~~~v~l~~~~~~  191 (433)
                      ++.++-.|+..........+.-.++-|...|-+-+...+|+.+.+.+...++ + -+.....+..+.+.++++++..+..
T Consensus       118 ~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~~  197 (521)
T PRK03612        118 LLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWLF  197 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444544332233333222223466677776777777777776666544 3 2344455566666666665555544


Q ss_pred             cc
Q 013969          192 RP  193 (433)
Q Consensus       192 r~  193 (433)
                      |.
T Consensus       198 ~~  199 (521)
T PRK03612        198 RH  199 (521)
T ss_pred             Hh
Confidence            43

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.48  E-value=0.11  Score=52.64  Aligned_cols=137  Identities=14%  Similarity=0.093  Sum_probs=86.1

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHhhc-cccccccccccC--chHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHH
Q 013969           38 LKSVLGFNQHQLTMLGVANDIGENV-GLLPGLASNKFP--PWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALC  114 (433)
Q Consensus        38 l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G--~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~  114 (433)
                      +.|.+..+.-++++...-..+...+ ..+.|.+.||+|  ++.....|.++.+......-++       .++.++++-.+
T Consensus       297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~-------~~~~~L~vp~~  369 (464)
T KOG3764|consen  297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA-------TSIAQLWVPNF  369 (464)
T ss_pred             HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh-------hhHHHHhhhhH
Confidence            4666775555787755544455544 789999999999  7666666666665443332221       13556666444


Q ss_pred             HHHhchhhhhhhHHHHHhhccc-C------CchhHHHHHHhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 013969          115 VATNSSAWLGTAVLVTNMRNFP-L------SRGTVAGILKGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVP  181 (433)
Q Consensus       115 l~g~g~g~~~~~~~~~~~~~Fp-~------~RG~a~gi~~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~  181 (433)
                      ..|++.+.+++..+.+....-. +      --|.+-++....+++|.++.|-+...+.+. +..+...+.++...
T Consensus       370 ~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~  444 (464)
T KOG3764|consen  370 GLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNL  444 (464)
T ss_pred             HHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHH
Confidence            4555666666655555555443 2      248899999999999998887776666653 34455555555433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.45  E-value=0.71  Score=48.01  Aligned_cols=129  Identities=20%  Similarity=0.299  Sum_probs=84.6

Q ss_pred             hhhhccHHHH--HHHhCCCHHHHHH-HHHHHHHHhhc-cccccccc---cccCchHHHHHHHHHHHHHHHHHHHHHhccc
Q 013969           29 YNFPLYSHSL--KSVLGFNQHQLTM-LGVANDIGENV-GLLPGLAS---NKFPPWLVLFIGSLACFFGYGVLWLAVSRTV  101 (433)
Q Consensus        29 y~~s~~~~~l--~~~~g~s~~~~~~-i~~~~~~~~~~-~~~~G~l~---Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~  101 (433)
                      |-.++|-..+  ....+.+....-. .+....++.+. +.+.+.+.   +|+|+++++.++.++..+++.+..+......
T Consensus       258 f~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~da  337 (461)
T KOG3098|consen  258 FWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDA  337 (461)
T ss_pred             HHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccC
Confidence            3344554443  2233433333333 23333344433 55566554   6699999999999999998887665332211


Q ss_pred             C-----------chhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHH
Q 013969          102 E-----------SLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVF  157 (433)
Q Consensus       102 ~-----------~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~  157 (433)
                      +           .+++....+..++.|++-+...+.....+...+|++|-.+..+...+.++++.+.
T Consensus       338 p~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~  404 (461)
T KOG3098|consen  338 PLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVA  404 (461)
T ss_pred             CCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence            1           1123344557888899988888888888999999999999999999988888664

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=94.33  E-value=0.71  Score=48.65  Aligned_cols=101  Identities=13%  Similarity=0.110  Sum_probs=62.6

Q ss_pred             ccccccccccccC-----chH--HHHHHHHHHHHHHHHHHHHHhcccC--chhHHHHHHHHHHHHhchhhhhhhHHHHHh
Q 013969           62 VGLLPGLASNKFP-----PWL--VLFIGSLACFFGYGVLWLAVSRTVE--SLPYWLLWIALCVATNSSAWLGTAVLVTNM  132 (433)
Q Consensus        62 ~~~~~G~l~Dr~G-----~r~--~~~ig~~l~~~g~~~~~~~~~~~~~--~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~  132 (433)
                      .+|+.+++-.|..     |..  =..+|.++.+++++.+........+  ..+.+.+.+..++..+|--+..+..+..++
T Consensus       324 l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~  403 (493)
T PRK15462        324 CGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQIT  403 (493)
T ss_pred             HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHH
Confidence            3566566544431     111  1668999999999887653322111  123455556556667776566666688899


Q ss_pred             hcccCC-chhHHHHHHhhh-hhHHHHHHHHHH
Q 013969          133 RNFPLS-RGTVAGILKGYG-GLSAAVFTEIYN  162 (433)
Q Consensus       133 ~~Fp~~-RG~a~gi~~~~~-glg~~i~~~l~~  162 (433)
                      |.-|+| ||..+|+-.... .+|..+.+.+..
T Consensus       404 ~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~  435 (493)
T PRK15462        404 RIEIPGVTGVLTGIYMLLSGAIANYLAGVIAD  435 (493)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999976 999999975422 356555555444

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=94.07  E-value=1.1  Score=46.95  Aligned_cols=130  Identities=9%  Similarity=-0.062  Sum_probs=77.3

Q ss_pred             cccccccccccCc-hHHHHHHHHHHHHHHHHHHHHHh--c---c--------cCchh-HHHHHHHHHHHHhchhhhhhhH
Q 013969           63 GLLPGLASNKFPP-WLVLFIGSLACFFGYGVLWLAVS--R---T--------VESLP-YWLLWIALCVATNSSAWLGTAV  127 (433)
Q Consensus        63 ~~~~G~l~Dr~G~-r~~~~ig~~l~~~g~~~~~~~~~--~---~--------~~~~~-~~~l~~~~~l~g~g~g~~~~~~  127 (433)
                      +++--++.+|+|+ |++-.++.++.+++.....+.-.  +   .        .+... .+...+...+.|+.-+..+..+
T Consensus       322 s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siP  401 (477)
T TIGR01301       322 SIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIP  401 (477)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHh
Confidence            4556778899996 66668887877777776654211  0   0        00001 2444455566777777888888


Q ss_pred             HHHHhhccc---CCchhHHHHHHhhhhhHHHHHHHHHHH---HhcCChhHHHHHHHHHHHHHHHHHHhhcc
Q 013969          128 LVTNMRNFP---LSRGTVAGILKGYGGLSAAVFTEIYNM---LLHNSSSKLLLVLAVGVPAVCLVMMYFVR  192 (433)
Q Consensus       128 ~~~~~~~Fp---~~RG~a~gi~~~~~glg~~i~~~l~~~---~~~~~~~~~l~~~a~~~~~v~l~~~~~~r  192 (433)
                      ..++++.-|   ++.|.-+|+.+...-+...+.+.....   ++.++....+.+.++..++.++.+.+.++
T Consensus       402 fal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~  472 (477)
T TIGR01301       402 FALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLP  472 (477)
T ss_pred             HHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCC
Confidence            888888887   346999999988876666555443333   22333334444444433333444444443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.04  E-value=0.79  Score=50.10  Aligned_cols=117  Identities=14%  Similarity=0.044  Sum_probs=79.4

Q ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHH--Hhcc----------
Q 013969           34 YSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLA--VSRT----------  100 (433)
Q Consensus        34 ~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~--~~~~----------  100 (433)
                      ...++++.|+++.++.+++.....++.. ...+..+..-|.=+-+.+.+|.+++++|.+++.+-  ..+.          
T Consensus       119 ~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~  198 (735)
T KOG3626|consen  119 VITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQ  198 (735)
T ss_pred             hhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhc
Confidence            3456899999999999999888888885 47888888888878888889999999988876542  0000          


Q ss_pred             --------------------------------cCchhHHHHH-HHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHH
Q 013969          101 --------------------------------VESLPYWLLW-IALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGIL  146 (433)
Q Consensus       101 --------------------------------~~~~~~~~l~-~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~  146 (433)
                                                      ..+..+|.++ +..++.|+|....++..+..+=++-. ++-.+-+|+.
T Consensus       199 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~  278 (735)
T KOG3626|consen  199 SVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGIL  278 (735)
T ss_pred             cccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHH
Confidence                                            0001134333 35677788887777666666666654 3355556665


Q ss_pred             Hhhh
Q 013969          147 KGYG  150 (433)
Q Consensus       147 ~~~~  150 (433)
                      .+..
T Consensus       279 ~~~~  282 (735)
T KOG3626|consen  279 YSMA  282 (735)
T ss_pred             HHHH
Confidence            4443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=93.97  E-value=9.4  Score=40.04  Aligned_cols=151  Identities=6%  Similarity=-0.088  Sum_probs=87.6

Q ss_pred             hHhHHHHHHHHHHhhhhhhhhccHHHHHHHhCCCH-----HHHHHHHHHHHHHh-h-ccccccccccccCchHHHHHHHH
Q 013969           12 WVGLGAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQ-----HQLTMLGVANDIGE-N-VGLLPGLASNKFPPWLVLFIGSL   84 (433)
Q Consensus        12 w~~l~~~~l~~~~~g~~y~~s~~~~~l~~~~g~s~-----~~~~~i~~~~~~~~-~-~~~~~G~l~Dr~G~r~~~~ig~~   84 (433)
                      |..++...+..++....|.   ..-++++.+..++     +.+.++-+...+.+ . +.++.+++.+|++++++.-+-..
T Consensus         6 ~~k~~~~~l~fF~il~~Y~---iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~   82 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYT---ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS   82 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence            4455555566666655554   3456788887743     45666666555554 3 37889999999999999888777


Q ss_pred             HHHHHHHHHHHHHhcccCc--h----------------------hHHHHHHHHHHHHhchhhhhh-hHHHHHhhccc-CC
Q 013969           85 ACFFGYGVLWLAVSRTVES--L----------------------PYWLLWIALCVATNSSAWLGT-AVLVTNMRNFP-LS  138 (433)
Q Consensus        85 l~~~g~~~~~~~~~~~~~~--~----------------------~~~~l~~~~~l~g~g~g~~~~-~~~~~~~~~Fp-~~  138 (433)
                      .+.+-+.+++.........  +                      +.|...++.++.-+=...+.. .--..+.+.+. ++
T Consensus        83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q  162 (472)
T TIGR00769        83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE  162 (472)
T ss_pred             HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            6666666665542211000  0                      123333333333221112211 11245677786 44


Q ss_pred             chhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          139 RGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       139 RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      -.+=.++...+.++|..+.+.+...+.
T Consensus       163 akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       163 AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556766777788888777776655

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=92.88  E-value=0.41  Score=52.07  Aligned_cols=67  Identities=12%  Similarity=0.119  Sum_probs=48.2

Q ss_pred             hhhhhhhhccHHH-HHHHhCCCHHHHHHHHHHHHH-Hhh-ccccccccccccC--chHHHHHHHHHHHHHHH
Q 013969           25 AGNAYNFPLYSHS-LKSVLGFNQHQLTMLGVANDI-GEN-VGLLPGLASNKFP--PWLVLFIGSLACFFGYG   91 (433)
Q Consensus        25 ~g~~y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~-~~~-~~~~~G~l~Dr~G--~r~~~~ig~~l~~~g~~   91 (433)
                      .+..+.+..+.|. +++++|++..+++++.....+ +.. ..+++|++.||++  .|+.+..+.++..++.+
T Consensus       343 ~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~  414 (633)
T TIGR00805       343 SLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYL  414 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHH
Confidence            3456667777777 577899999999987655444 443 4889999999998  55667666666555543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=91.86  E-value=2.6  Score=43.59  Aligned_cols=124  Identities=10%  Similarity=0.022  Sum_probs=75.0

Q ss_pred             hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHH--HHHHHHHHHhcccCch
Q 013969           28 AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFF--GYGVLWLAVSRTVESL  104 (433)
Q Consensus        28 ~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~--g~~~~~~~~~~~~~~~  104 (433)
                      .-+|+-....+.+..|+|...++.+-..+.+... ..+...++.+|+|+.|.-+++...-..  .....++...+   ++
T Consensus       274 VLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~---~~  350 (432)
T PF06963_consen  274 VLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPG---SP  350 (432)
T ss_pred             HhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCC---CC
Confidence            3345555555555569999999987665555544 478888999999999999999874332  22222221111   11


Q ss_pred             -hHHHHHH---HHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHH
Q 013969          105 -PYWLLWI---ALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSA  154 (433)
Q Consensus       105 -~~~~l~~---~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~  154 (433)
                       +.+..++   ..++.=+|.=..+.+....++++-|+ +||...|.=.+...+-.
T Consensus       351 ~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~  405 (432)
T PF06963_consen  351 FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFE  405 (432)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHH
Confidence             1122111   11121134434566778889999984 69999998766554433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PTZ00207 hypothetical protein; Provisional

Probab=91.58  E-value=2.7  Score=45.28  Aligned_cols=84  Identities=13%  Similarity=0.142  Sum_probs=61.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHH
Q 013969           75 PWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSA  154 (433)
Q Consensus        75 ~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~  154 (433)
                      ||.+.+.-..++.++.+++++...       --.+++-.++.|++.|..+.....+..+.|-|+-|+---+......+|+
T Consensus       428 prt~~l~~~~~~~~~~lll~~~~p-------~~~L~~~~~lvg~~~G~~~~~~~~i~selFgk~~g~~yN~~~~a~pigs  500 (591)
T PTZ00207        428 PITIALFIPSVCIITMLTLFLTLP-------KAALPLPYFIAAFANGFMAATIALVTRTIFAKDPAKHYNFCFLGSVLSA  500 (591)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHCC-------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhccchHHHhhHHhHHHHHHH
Confidence            555555555557777777665321       1246777788999999888888899999999778988888888888898


Q ss_pred             HHHH-HHHHHHh
Q 013969          155 AVFT-EIYNMLL  165 (433)
Q Consensus       155 ~i~~-~l~~~~~  165 (433)
                      .+++ .++..++
T Consensus       501 ~~~n~~l~G~~Y  512 (591)
T PTZ00207        501 IFLNRLLYGEWY  512 (591)
T ss_pred             HHHHHHHHHHHH
Confidence            8884 4555555

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.36  E-value=0.42  Score=49.63  Aligned_cols=90  Identities=16%  Similarity=-0.032  Sum_probs=69.5

Q ss_pred             hhccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-C
Q 013969           60 ENVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-S  138 (433)
Q Consensus        60 ~~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~  138 (433)
                      +....+++.+.|+.|||..+.+|+.....-...+..        +|-+.+++..++.|+|.++.+..--..++++..+ +
T Consensus        64 tv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~--------~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~t  135 (461)
T KOG3098|consen   64 TVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF--------PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRET  135 (461)
T ss_pred             HHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh--------cchHHHHHHHHHhhhhHHheecccceehhhcCChhh
Confidence            345888999999999999999999987775554433        2346778888999999998888777888999874 4


Q ss_pred             chhHHHHHHhhhhhHHHHH
Q 013969          139 RGTVAGILKGYGGLSAAVF  157 (433)
Q Consensus       139 RG~a~gi~~~~~glg~~i~  157 (433)
                      +.+-+++..+....+..+.
T Consensus       136 ie~Nisi~Wai~~~~li~G  154 (461)
T KOG3098|consen  136 IERNISIFWAIGQSSLIIG  154 (461)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            8888888777655554444

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=88.28  E-value=4.7  Score=40.92  Aligned_cols=116  Identities=19%  Similarity=0.179  Sum_probs=71.1

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHh-hccccccccccccC--chHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHH
Q 013969           39 KSVLGFNQHQLTMLGVANDIGE-NVGLLPGLASNKFP--PWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCV  115 (433)
Q Consensus        39 ~~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G--~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l  115 (433)
                      ...+|++..|.+-+.+...+++ .++...++..||..  .+..+..+..++.-.++.++..     ..  ...+++...+
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~-----~~--~~~l~~~s~l  361 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA-----RT--PVVLYLGSTL  361 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc-----cc--chhhhHHHHH
Confidence            3578999999998554444555 45778888888877  6666666665555455433321     11  2334443344


Q ss_pred             HHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHH
Q 013969          116 ATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIY  161 (433)
Q Consensus       116 ~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~  161 (433)
                      -.+..+..-+....++.+.-| ++||.+.|+..+...++=++.|.+.
T Consensus       362 ~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~  408 (451)
T KOG2615|consen  362 KSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVS  408 (451)
T ss_pred             HHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhh
Confidence            444444444444455566668 5699999998887766666655444

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=87.60  E-value=0.46  Score=45.80  Aligned_cols=79  Identities=16%  Similarity=0.130  Sum_probs=55.4

Q ss_pred             HHhCCCHHHHHHHHHHHHHHh-hccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHh
Q 013969           40 SVLGFNQHQLTMLGVANDIGE-NVGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATN  118 (433)
Q Consensus        40 ~~~g~s~~~~~~i~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~  118 (433)
                      +.+|+-..|++.+...+.-.. .++.++|-|+|+-|||+....=.+...+.++      +..  ++.|-.+.+-++++|+
T Consensus        65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi------TKh--SpqYkVLmVGR~LGGi  136 (454)
T KOG4332|consen   65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI------TKH--SPQYKVLMVGRVLGGI  136 (454)
T ss_pred             hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH------hhc--CCceEEEeehhhhhhH
Confidence            467888889987665553333 5689999999999999976554444444443      222  3456677778999999


Q ss_pred             chhhhhhh
Q 013969          119 SSAWLGTA  126 (433)
Q Consensus       119 g~g~~~~~  126 (433)
                      .++..+.+
T Consensus       137 aTsLLFSa  144 (454)
T KOG4332|consen  137 ATSLLFSA  144 (454)
T ss_pred             HHHHHHHH
Confidence            88877643

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=85.55  E-value=5.8  Score=39.84  Aligned_cols=116  Identities=11%  Similarity=0.090  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccC--chhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCC----chhHHHHHHhhh
Q 013969           77 LVLFIGSLACFFGYGVLWLAVSRTVE--SLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLS----RGTVAGILKGYG  150 (433)
Q Consensus        77 ~~~~ig~~l~~~g~~~~~~~~~~~~~--~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~----RG~a~gi~~~~~  150 (433)
                      +++.+|+++..+|++++.+.......  +...+.+++...+.++|+|..=+.......+.|+++    |-......-.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            57889999999999986553322110  112345566566678899888777788899999743    344444444555


Q ss_pred             hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhhcc
Q 013969          151 GLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMMYFVR  192 (433)
Q Consensus       151 glg~~i~~~l~~~~~~~~~~~~l~~~a~~~~~v~l~~~~~~r  192 (433)
                      .+|+.+...+...+-++..+.+-+.++.+..+++++....-|
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~  123 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR  123 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence            677755432222222233333444444444445554444333

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=85.33  E-value=8.8  Score=39.32  Aligned_cols=121  Identities=17%  Similarity=0.163  Sum_probs=72.4

Q ss_pred             cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhH
Q 013969           63 GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTV  142 (433)
Q Consensus        63 ~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a  142 (433)
                      -+.+-++.+|...+.=..+..++..+|+++.++       +++.+.-.+..++.++++|+.-..-+. .++.||+.   +
T Consensus        76 Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~-------~~~v~~~l~Gv~las~ssg~GE~tfL~-lt~~y~~~---~  144 (402)
T PF02487_consen   76 KLIAPFFIHRVPYWIRILICVALSAAGMLLVAF-------SPSVWVRLLGVVLASLSSGLGEVTFLS-LTHFYGKS---S  144 (402)
T ss_pred             HHHhHhhhhhccchHHHHHHHHHHHHHHhheee-------ccchhHHHHHHHHHhhhhhhhHHHHHH-HHHhcCcc---c
Confidence            455667888887555555666677777775443       123554444555677777665544444 46677763   3


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHHHHHHhhcccC
Q 013969          143 AGILKGYGGLSAAVFTEIYNMLLH--NSSSKLLLVLAVGVPAVCLVMMYFVRPC  194 (433)
Q Consensus       143 ~gi~~~~~glg~~i~~~l~~~~~~--~~~~~~l~~~a~~~~~v~l~~~~~~r~~  194 (433)
                      ++--.+|.|.++.+.+..+..+-.  -..+..++....+|++..+...+.++.+
T Consensus       145 l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~  198 (402)
T PF02487_consen  145 LSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSP  198 (402)
T ss_pred             cccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            445556777777666665544332  3456677777777766665555555543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=84.42  E-value=1.9  Score=44.41  Aligned_cols=122  Identities=13%  Similarity=0.089  Sum_probs=66.2

Q ss_pred             HhhhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHH-HhhccccccccccccC-chHHHHHHHHHHHHHHHHHHHHHhccc
Q 013969           24 AAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDI-GENVGLLPGLASNKFP-PWLVLFIGSLACFFGYGVLWLAVSRTV  101 (433)
Q Consensus        24 ~~g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~-~~~~~~~~G~l~Dr~G-~r~~~~ig~~l~~~g~~~~~~~~~~~~  101 (433)
                      ..|..|.++.........-|++....|.+.....+ |++.+.+.|.+.||.. -|.++++-.....++.+.+.. .+...
T Consensus       278 ~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~-~t~~~  356 (480)
T KOG2563|consen  278 GLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLT-CTLFL  356 (480)
T ss_pred             hHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-hhccC
Confidence            35667777776664445567887777886554444 4566999999999975 445555555554444322222 22221


Q ss_pred             CchhHHHHHH-HHHHHHhchhhhhhhHHHH-HhhcccCCchhHHHHHHhh
Q 013969          102 ESLPYWLLWI-ALCVATNSSAWLGTAVLVT-NMRNFPLSRGTVAGILKGY  149 (433)
Q Consensus       102 ~~~~~~~l~~-~~~l~g~g~g~~~~~~~~~-~~~~Fp~~RG~a~gi~~~~  149 (433)
                      .  ..+.++. +..++-.+.+ .+....-. +..-||..-|+-.|++...
T Consensus       357 ~--~~viv~~t~~~~g~~~~~-~~Pig~ElgvE~TyPv~E~tSsGll~~~  403 (480)
T KOG2563|consen  357 G--DSVIVFTTCGLLGFFGTG-YLPIGFELGVETTYPVAEGTSSGLLNLS  403 (480)
T ss_pred             C--ceEehhhhHHHHHHhhcC-CCCcceeeeeeeccccCCcccceeEEee
Confidence            1  1233444 3333323332 23222333 3445897777777775443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=82.40  E-value=1.2  Score=47.02  Aligned_cols=57  Identities=18%  Similarity=0.113  Sum_probs=44.2

Q ss_pred             cHHHHHHHhCCCHHHHHHHHHHHH-HHhhccccccccccccCchHHHHHHHHHHHHHH
Q 013969           34 YSHSLKSVLGFNQHQLTMLGVAND-IGENVGLLPGLASNKFPPWLVLFIGSLACFFGY   90 (433)
Q Consensus        34 ~~~~l~~~~g~s~~~~~~i~~~~~-~~~~~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~   90 (433)
                      +.+.+-+++|+++++.+.+....- +..+..|++|.++||+-.||..++|.++..+..
T Consensus        33 ll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a   90 (618)
T KOG3762|consen   33 LLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTA   90 (618)
T ss_pred             HHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            334457889999999998655444 444569999999999999998888888766543

>PF12832 MFS_1_like: MFS_1 like family

Probab=80.81  E-value=1.3  Score=34.04  Aligned_cols=48  Identities=15%  Similarity=0.123  Sum_probs=39.1

Q ss_pred             eecchhhHHHhhcCCcc--chhHHHHHHhHHHHhhhcccchHHHHHhhhc
Q 013969          370 VLNNLAQIGIAQGVHDT--TILLSLFSFCNFVGRLGGGVVSEHFVRLVQS  417 (433)
Q Consensus       370 ~i~n~~~i~~s~G~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~  417 (433)
                      +..-+.-..++.|++..  ..+.++.-+...++..++|+++||.++++..
T Consensus        19 ~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~   68 (77)
T PF12832_consen   19 LYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVI   68 (77)
T ss_pred             HHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence            33455567778898875  5788899999999999999999999988763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	433
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 76/499 (15%), Positives = 146/499 (29%), Gaps = 137/499 (27%)

Query: 9   RP-PWVGL----GAAVWVQIAAGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGENVG 63
           RP   V +    G+       A +       S+ ++  + F    L +    N     + 
Sbjct: 148 RPAKNVLIDGVLGSGKTW--VALDVCL----SYKVQCKMDFKIFWLNL-KNCNSPETVLE 200

Query: 64  LLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYW--LL-----WIALCVA 116
           +L  L     P W      S         +   + R ++S PY   LL            
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ------ 254

Query: 117 TNSSAW----LGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKL 172
            N+ AW    L   +L+T  R        V   L      +  +  + ++M L     K 
Sbjct: 255 -NAKAWNAFNLSCKILLTT-RF-----KQVTDFLSA--ATTTHISLDHHSMTLTPDEVKS 305

Query: 173 LLVLAVGVPAVCLVMMYFVRP---CT--P-------ASGEDSAAPSHFLFTQAASVVLGF 220
           LL+  +      L       P    T  P        S  D    + +   +     +  
Sbjct: 306 LLLKYLDCRPQDL-------PREVLTTNPRRLSIIAESIRD--GLATWDNWKH----VNC 352

Query: 221 FLLTTTI---LDHMIPLSASISYASLFIMIILLMAPLAIPVKMTICR-----KRTSESGI 272
             LTT I   L+ + P      +  L +          IP    +        ++    +
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSV----FPPSAHIPTI-LLSLIWFDVIKSDVMVV 407

Query: 273 LDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGEGAVRRK 332
           +++    S          +K      P  ST  +        +     +  E E A+ R 
Sbjct: 408 VNKLHKYSL--------VEK-----QPKESTISI------PSIYLELKVKLENEYALHRS 448

Query: 333 ---KRRPKRGED-------------FKFT----EAVVKADFWLLF-LVYF---------- 361
                   +  D             +       + +   +   LF +V+           
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

Query: 362 ----AGVGSGVTVLNNLAQIGIAQG---VHDTTILLSLFSFCNFVGRLGGGVVSEHFVRL 414
               A   SG ++LN L Q+   +     +D      + +  +F+ ++   ++   +  L
Sbjct: 509 HDSTAWNASG-SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567

Query: 415 VQSELGNELAHHLIIFQDS 433
           ++  L  E      IF+++
Sbjct: 568 LRIALMAE---DEAIFEEA 583

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	433
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.85
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.79
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.72
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.6
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.5
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.35
2xut_A	524	Proton/peptide symporter family protein; transport	99.3
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.93
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.84
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.72
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.63
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.59
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.09
2xut_A	524	Proton/peptide symporter family protein; transport	97.74

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.85  E-value=3.1e-20  Score=187.53  Aligned_cols=153  Identities=13%  Similarity=0.107  Sum_probs=124.4

Q ss_pred             CCChHhHHHHHHHHHHhhh-hhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHH
Q 013969            9 RPPWVGLGAAVWVQIAAGN-AYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLAC   86 (433)
Q Consensus         9 ~~~w~~l~~~~l~~~~~g~-~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~   86 (433)
                      +++|..++...+..+..+. .+.++.+.|.+++++|+|..+++++.+...++.. ..++.|++.||+|+|+++.++.++.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~  101 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence            4455555544444444443 5678888999999999999999998888888875 5999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969           87 FFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      +++.++++....    .++++.+++.+++.|+|.+..+.+....+.+++| ++|+++.|+..++.++|..+.+.+...+.
T Consensus       102 ~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          102 ALGAALFWPAAE----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHhccc----cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999887643211    2357888889999999999988888999999998 56999999999999999988877766554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.79  E-value=3.6e-19  Score=180.19  Aligned_cols=286  Identities=12%  Similarity=0.050  Sum_probs=189.9

Q ss_pred             hHhHHHHHHHHHHhh-hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHH
Q 013969           12 WVGLGAAVWVQIAAG-NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFG   89 (433)
Q Consensus        12 w~~l~~~~l~~~~~g-~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g   89 (433)
                      |..+....+..+..+ ..+.++.+.|.+.+++ +|..+.+++.+...++.. ..++.|++.||+|+|+++.++.++.+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~  105 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV  105 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHH
Confidence            455544444444433 4677888888898999 999999998888888875 4999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhc-C
Q 013969           90 YGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLH-N  167 (433)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~-~  167 (433)
                      .+++.+.... .  .+++.+++.+++.|++.+..+.+....+.+++| ++|+++.|+...+.++|..+.+.+...+.. .
T Consensus       106 ~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  182 (451)
T 1pw4_A          106 MLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF  182 (451)
T ss_dssp             HHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred             HHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8876551100 0  235677778899999999888888999999998 569999999999999999888777665443 1


Q ss_pred             C-hhHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHH
Q 013969          168 S-SSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLFIM  246 (433)
Q Consensus       168 ~-~~~~l~~~a~~~~~v~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  246 (433)
                      + |+..+.+.+++.++..++..+++++.|+....                                              
T Consensus       183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------  216 (451)
T 1pw4_A          183 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL----------------------------------------------  216 (451)
T ss_dssp             CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCC----------------------------------------------
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCC----------------------------------------------
Confidence            2 33333333333332222222222222111000                                              


Q ss_pred             HHHHHhhhhhhhhhhhhccccCcccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHhhcc
Q 013969          247 IILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAEGE  326 (433)
Q Consensus       247 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (433)
                                          +++                    ++..+.             .++ +.+.          
T Consensus       217 --------------------~~~--------------------~~~~~~-------------~~~-~~~~----------  232 (451)
T 1pw4_A          217 --------------------PPI--------------------EEYKND-------------YPD-DYNE----------  232 (451)
T ss_dssp             --------------------CSC--------------------TTTCCC-------------------------------
T ss_pred             --------------------CCh--------------------hhhccc-------------ccc-cchh----------
Confidence                                000                    000000             000 0000          


Q ss_pred             cccccccCCCCCCCCCcHHHHhhhhhHHHHHHHHHhhcccceeeecchhhHHHh-hcCCcc--chhHHHHHHhHHHHhhh
Q 013969          327 GAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIA-QGVHDT--TILLSLFSFCNFVGRLG  403 (433)
Q Consensus       327 ~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g~~~i~n~~~i~~s-~G~~~~--~~~vsl~si~n~~GRl~  403 (433)
                      +    +++ +...++...++.+|++.+|.+.+..++.......+......+.++ .|.+..  ....++.++++.+|+++
T Consensus       233 ~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  307 (451)
T 1pw4_A          233 K----AEQ-ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLL  307 (451)
T ss_dssp             -----------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h----hhc-ccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            0    000 000112235788999999999988887776666666777777777 577654  56889999999999999


Q ss_pred             cccchHHH--HHhhh
Q 013969          404 GGVVSEHF--VRLVQ  416 (433)
Q Consensus       404 ~G~lsD~~--~~~~~  416 (433)
                      .|+++||+  ++|..
T Consensus       308 ~g~l~~~~~~~~~~~  322 (451)
T 1pw4_A          308 CGWMSDKVFRGNRGA  322 (451)
T ss_dssp             HHHHHHHTSTTCHHH
T ss_pred             HHHHHHHHhcCCchh
Confidence            99999998  76654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.72  E-value=1.9e-17  Score=164.16  Aligned_cols=132  Identities=11%  Similarity=-0.036  Sum_probs=111.3

Q ss_pred             hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           27 NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        27 ~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      ....+..+.|.+.+++|+|.++.+++.+...++.. ..++.|++.||+|+|+++.++.++.+++.+.+...       ++
T Consensus        15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~   87 (375)
T 2gfp_A           15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SS   87 (375)
T ss_dssp             HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HH
T ss_pred             HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------cc
Confidence            34556667788899999999999998888888875 59999999999999999999999999988876552       34


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      ++.+++.+++.|++.+..+......+.+++| ++|+++.++...+.++|..+.+.+...+.
T Consensus        88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  148 (375)
T 2gfp_A           88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD  148 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            7788888899999998888888899999998 67999999999999999888776665443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.60  E-value=3e-13  Score=138.67  Aligned_cols=155  Identities=14%  Similarity=0.075  Sum_probs=115.6

Q ss_pred             hhhhhhccHHH-HHHH-----hCCCHHHHHHHHHHHHHHhh-ccccccccccc-cCchHHHHHHHHHHHHHHHHHHHHHh
Q 013969           27 NAYNFPLYSHS-LKSV-----LGFNQHQLTMLGVANDIGEN-VGLLPGLASNK-FPPWLVLFIGSLACFFGYGVLWLAVS   98 (433)
Q Consensus        27 ~~y~~s~~~~~-l~~~-----~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr-~G~r~~~~ig~~l~~~g~~~~~~~~~   98 (433)
                      ..|.+..+.+. ++++     +|+|..+.+++.+...++.. ..++.|++.|| +|+|+++.++.++.+++.+++..   
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~---  104 (491)
T 4aps_A           28 SYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL---  104 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS---
T ss_pred             HHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH---
Confidence            34444334433 5665     99999999998888878875 49999999999 89999999999999998876543   


Q ss_pred             cccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CC--chhHHHHHHhhhhhHHHHHHHHHHHHhc-CChhHHHH
Q 013969           99 RTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LS--RGTVAGILKGYGGLSAAVFTEIYNMLLH-NSSSKLLL  174 (433)
Q Consensus        99 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~--RG~a~gi~~~~~glg~~i~~~l~~~~~~-~~~~~~l~  174 (433)
                          .++++.+++.+++.|+|.+..+.+....+.++|| ++  |+++.++...+.++|..+.+.+...+.+ .+|+..+.
T Consensus       105 ----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~  180 (491)
T 4aps_A          105 ----PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFS  180 (491)
T ss_dssp             ----CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             ----hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence                1246777788889999999888888899999998 55  7778888888888999888888777765 34544444


Q ss_pred             HHHHHHHHHHHHHHh
Q 013969          175 VLAVGVPAVCLVMMY  189 (433)
Q Consensus       175 ~~a~~~~~v~l~~~~  189 (433)
                      +.++ ..+++++..+
T Consensus       181 ~~~~-~~~~~~~~~~  194 (491)
T 4aps_A          181 LAAI-GMFIGLLVYY  194 (491)
T ss_dssp             HHHH-HHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHH
Confidence            4433 3334443333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.50  E-value=8.7e-14  Score=142.51  Aligned_cols=161  Identities=13%  Similarity=-0.007  Sum_probs=111.2

Q ss_pred             hhhccHHHHHHHhCCC--------HHHHHHHHHHHHHHhhc-cccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcc
Q 013969           30 NFPLYSHSLKSVLGFN--------QHQLTMLGVANDIGENV-GLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRT  100 (433)
Q Consensus        30 ~~s~~~~~l~~~~g~s--------~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~  100 (433)
                      ..+...|.++++++.+        .++.+++.+...+|..+ +++.|++.||+|||+++.++.+++.++.++.++.....
T Consensus        30 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~  109 (491)
T 4gc0_A           30 VISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGF  109 (491)
T ss_dssp             GGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred             HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3455667777777432        34456777777788765 89999999999999999999999999887554211000


Q ss_pred             -----------cCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhc--
Q 013969          101 -----------VESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLH--  166 (433)
Q Consensus       101 -----------~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~--  166 (433)
                                 .-+++++++++.+++.|+|.|..+..+...+.|+.| ++||+..++...+..+|..+...+......  
T Consensus       110 ~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~  189 (491)
T 4gc0_A          110 TSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSG  189 (491)
T ss_dssp             SCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             hhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccc
Confidence                       002458889999999999999998888999999998 569999999888877776555444333321  


Q ss_pred             ------CChhHHHHHHHHHHHHHHHHHHhh
Q 013969          167 ------NSSSKLLLVLAVGVPAVCLVMMYF  190 (433)
Q Consensus       167 ------~~~~~~l~~~a~~~~~v~l~~~~~  190 (433)
                            ..+++++.....++.++.++..++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (491)
T 4gc0_A          190 DASWLNTDGWRYMFASECIPALLFLMLLYT  219 (491)
T ss_dssp             CTTTTTTTHHHHHHHTTHHHHHHHHHHGGG
T ss_pred             ccccccchhhHHHhhhhhhhhhhhhhhhhc
Confidence                  123455555555444444444333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.35  E-value=3e-13  Score=136.63  Aligned_cols=130  Identities=12%  Similarity=0.072  Sum_probs=83.1

Q ss_pred             hhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHH-HHhcccCchhH-H
Q 013969           31 FPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWL-AVSRTVESLPY-W  107 (433)
Q Consensus        31 ~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~-~~~~~~~~~~~-~  107 (433)
                      ++.+...+++++|+|..+++++.+...++.. .+++.|+++||+|||+++.++.++.+++...+.. ....     .. +
T Consensus        27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~  101 (417)
T 2cfq_A           27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP-----LLQY  101 (417)
T ss_dssp             TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH-----HHHT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence            3433333677899999999998887777775 4999999999999999999988876553221111 0000     00 0


Q ss_pred             HHHHHHHHHHhchhhhhhhHHHHHhhccc---CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          108 LLWIALCVATNSSAWLGTAVLVTNMRNFP---LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       108 ~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp---~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      .......+.+.+.+..+.+.......+.+   ++||.+.|....+..+|.++.+.+...+.
T Consensus       102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~  162 (417)
T 2cfq_A          102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF  162 (417)
T ss_dssp             TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            11123334455555555444455555554   45788888887777788887776665543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.30  E-value=2.7e-11  Score=125.17  Aligned_cols=155  Identities=15%  Similarity=0.064  Sum_probs=114.1

Q ss_pred             hhhhhccHHH-HHHHhC------CCHHHHHHHHHHHHHHhh-cccccccccccc-CchHHHHHHHHHHHHHHHHHHHHHh
Q 013969           28 AYNFPLYSHS-LKSVLG------FNQHQLTMLGVANDIGEN-VGLLPGLASNKF-PPWLVLFIGSLACFFGYGVLWLAVS   98 (433)
Q Consensus        28 ~y~~s~~~~~-l~~~~g------~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~-G~r~~~~ig~~l~~~g~~~~~~~~~   98 (433)
                      .|....+.+. +++++|      +|..+.+++.+...++.. ..+++|++.||+ |+|+++.++.++.+++.+++...  
T Consensus        28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--  105 (524)
T 2xut_A           28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--  105 (524)
T ss_dssp             HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--
Confidence            3333334443 678899      999999998887777775 589999999999 99999999999999988866542  


Q ss_pred             cccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHH---HHhhhhhHHHHHHHHHHHHhcC-ChhHHH
Q 013969           99 RTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGI---LKGYGGLSAAVFTEIYNMLLHN-SSSKLL  173 (433)
Q Consensus        99 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi---~~~~~glg~~i~~~l~~~~~~~-~~~~~l  173 (433)
                      .    .+++.+++.+++.|++.+..+.+....+.+++|+ +||++.++   ...+.++|.++.+.+...+.+. +|+..+
T Consensus       106 ~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f  181 (524)
T 2xut_A          106 E----HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF  181 (524)
T ss_dssp             S----SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred             c----ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            1    1467777788889999988888888999999985 58877766   7777888888887776666543 454444


Q ss_pred             HHHHHHHHHHHHHHHh
Q 013969          174 LVLAVGVPAVCLVMMY  189 (433)
Q Consensus       174 ~~~a~~~~~v~l~~~~  189 (433)
                      .+.+++ .+++++..+
T Consensus       182 ~~~~~~-~~~~~~~~~  196 (524)
T 2xut_A          182 GIPGVL-MFVATVFFW  196 (524)
T ss_dssp             HHHHHH-HHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHH
Confidence            444443 333333333

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.93  E-value=2.3e-08  Score=100.48  Aligned_cols=148  Identities=16%  Similarity=0.027  Sum_probs=105.8

Q ss_pred             hhhhhhhccHHHH-HHHhCCCHHHHHHHHHHHHHHhh-cccccccccccc--CchHHHHHHHHHHH-HHHHHHHHHHhcc
Q 013969           26 GNAYNFPLYSHSL-KSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKF--PPWLVLFIGSLACF-FGYGVLWLAVSRT  100 (433)
Q Consensus        26 g~~y~~s~~~~~l-~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~--G~r~~~~ig~~l~~-~g~~~~~~~~~~~  100 (433)
                      ...+.+..+.|.+ ++.+|++..+.+++.+...++.. ..++.|++.||+  |+|+.+.++.++.. ++++.+..     
T Consensus       266 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  340 (451)
T 1pw4_A          266 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM-----  340 (451)
T ss_dssp             HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS-----
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH-----
Confidence            3355566677776 44489999999997777767765 489999999999  99999988887766 55553322     


Q ss_pred             cCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCC-chhHHHHHHhhhhh-HHHHHHHHHHHHhcC-ChhHHHHHHH
Q 013969          101 VESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLS-RGTVAGILKGYGGL-SAAVFTEIYNMLLHN-SSSKLLLVLA  177 (433)
Q Consensus       101 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~gl-g~~i~~~l~~~~~~~-~~~~~l~~~a  177 (433)
                      .+..+.+.+.+..++.|++.+..+......+.+.+|++ ||++.|+......+ |.++.+.+...+.+. ++...+.+.+
T Consensus       341 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~  420 (451)
T 1pw4_A          341 NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI  420 (451)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            11123555555566677777666666678889999965 99999999998888 998888888877764 3333333333


Q ss_pred             H
Q 013969          178 V  178 (433)
Q Consensus       178 ~  178 (433)
                      +
T Consensus       421 ~  421 (451)
T 1pw4_A          421 G  421 (451)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.84  E-value=4.4e-08  Score=98.08  Aligned_cols=132  Identities=10%  Similarity=-0.030  Sum_probs=96.0

Q ss_pred             hhhhhhhccHHHH-H-HHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccC
Q 013969           26 GNAYNFPLYSHSL-K-SVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVE  102 (433)
Q Consensus        26 g~~y~~s~~~~~l-~-~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~  102 (433)
                      +..+.+..+.|.+ . +.+|++..+.+.+.....++.. ..++.|++.||+|+|+++.++.++..++++.+...      
T Consensus       272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------  345 (438)
T 3o7q_A          272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------  345 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc------
Confidence            3344555555655 4 4569999999997777666665 48999999999999999999998888877655431      


Q ss_pred             chhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          103 SLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       103 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                       ++.+.+.. .++.|++.+..+........+.+|++|+.+.++...+ .+|+++.+.+...+.+
T Consensus       346 -~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~g~l~~  406 (438)
T 3o7q_A          346 -GGHVGLIA-LTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMT-IIGGGIVTPVMGFVSD  406 (438)
T ss_dssp             -CHHHHHHH-HHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred             -CCcHHHHH-HHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHH-HHHHHHHHHHHHHHHH
Confidence             12333322 3556666776776677777999998899999988754 4888888888777765

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.72  E-value=4.6e-07  Score=92.26  Aligned_cols=164  Identities=18%  Similarity=0.148  Sum_probs=102.4

Q ss_pred             hhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchh
Q 013969           27 NAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        27 ~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~  105 (433)
                      ..+.+..|.+.+.+..+.+..+.........+... ..++++++.||+|||+.++.+....+++.+.+........  ..
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~--~~  369 (491)
T 4gc0_A          292 GINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA--PG  369 (491)
T ss_dssp             CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC--CH
T ss_pred             hhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc--ch
Confidence            35566677888888889888777665555545554 4788999999999999999999988887776655433321  12


Q ss_pred             HHH-HHHHHHHHHhchhhhhhhHHHHHhhcccCC-chhHHHHHHhhhhhHHHHHHHHHHHHhcC-------ChhHHHHHH
Q 013969          106 YWL-LWIALCVATNSSAWLGTAVLVTNMRNFPLS-RGTVAGILKGYGGLSAAVFTEIYNMLLHN-------SSSKLLLVL  176 (433)
Q Consensus       106 ~~~-l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~~~~~-------~~~~~l~~~  176 (433)
                      ... +.++....+.+.+. ........+|.||.+ |+++.|+..+...+++.+.+.+...+...       .....+.+.
T Consensus       370 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~  448 (491)
T 4gc0_A          370 IVALLSMLFYVAAFAMSW-GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY  448 (491)
T ss_dssp             HHHHHHHHHHHHHHHTTT-THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHH-HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            222 22222222222222 122345678999965 99999999888778887766554433321       122233444


Q ss_pred             HHHHHHHHHHHHhhccc
Q 013969          177 AVGVPAVCLVMMYFVRP  193 (433)
Q Consensus       177 a~~~~~v~l~~~~~~r~  193 (433)
                      ++++++..+..++++++
T Consensus       449 ~~~~~~~~i~~~~~~PE  465 (491)
T 4gc0_A          449 GCMGVLAALFMWKFVPE  465 (491)
T ss_dssp             HHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHheecC
Confidence            55555555555555543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.63  E-value=3.9e-08  Score=100.32  Aligned_cols=158  Identities=6%  Similarity=-0.002  Sum_probs=99.7

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHH-----HHHHHHHHHHHHHHHHHhcc--cCchhHHHH
Q 013969           38 LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLF-----IGSLACFFGYGVLWLAVSRT--VESLPYWLL  109 (433)
Q Consensus        38 l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~-----ig~~l~~~g~~~~~~~~~~~--~~~~~~~~l  109 (433)
                      +++.++.+..+.+.+.....++.. ..++.|++.||+|+|+...     +|.++.+++++.+.......  ....+.+.+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (491)
T 4aps_A          310 AAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWL  389 (491)
T ss_dssp             HHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHH
T ss_pred             HHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHH
Confidence            455567765555554444444543 4788999999999986655     77777777776554422110  001124455


Q ss_pred             HHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 013969          110 WIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLHNSSSKLLLVLAVGVPAVCLVMM  188 (433)
Q Consensus       110 ~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~l~~~a~~~~~v~l~~~  188 (433)
                      .+..++.|+|.+..+......+.+.+|+ +||++.|+......+|+.+.+.+...+.+.+....+...+++.++..++..
T Consensus       390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (491)
T 4aps_A          390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLV  469 (491)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            5566677778777777778889999995 599999999999889998887776555554555555556665555555555


Q ss_pred             hhcccCC
Q 013969          189 YFVRPCT  195 (433)
Q Consensus       189 ~~~r~~~  195 (433)
                      ++.+..+
T Consensus       470 ~~~~~~~  476 (491)
T 4aps_A          470 FLSKRIQ  476 (491)
T ss_dssp             HC-----
T ss_pred             HHHHHHH
Confidence            5554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.59  E-value=2.2e-07  Score=93.42  Aligned_cols=138  Identities=9%  Similarity=0.030  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhh
Q 013969           48 QLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTA  126 (433)
Q Consensus        48 ~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~  126 (433)
                      +.+.+.....++.. ..++.|++.||+|+|+++.++.++.+++++.+..     .+  +.+.+.+..++.+++.+.....
T Consensus       260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~l~~~~~~~~~~~  332 (417)
T 2cfq_A          260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-----AT--SALEVVILKTLHMFEVPFLLVG  332 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-----CC--SHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-----hc--cHHHHHHHHHHHHHHHHHHHHH
Confidence            34554444444443 4788999999999999999888888777654321     11  2344444444445444444445


Q ss_pred             HHHHHhhcccCC-chhHHHHH-HhhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHhhcc
Q 013969          127 VLVTNMRNFPLS-RGTVAGIL-KGYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVCLVMMYFVR  192 (433)
Q Consensus       127 ~~~~~~~~Fp~~-RG~a~gi~-~~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~l~~~~~~r  192 (433)
                      ....+.+.+|++ ||++.|+. ....++|+.+.+.+...+.+. +....+.+.+++.++..++..++.|
T Consensus       333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            567889999954 99999985 667778888887777766653 2333334444443333333333344

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.09  E-value=2e-07  Score=91.53  Aligned_cols=133  Identities=16%  Similarity=0.222  Sum_probs=87.6

Q ss_pred             hhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHH-HHHHHHHHHHHHhcccCchh
Q 013969           29 YNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLA-CFFGYGVLWLAVSRTVESLP  105 (433)
Q Consensus        29 y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l-~~~g~~~~~~~~~~~~~~~~  105 (433)
                      +.+..+.|. +++++|++..+.+.+.....++.. ..++.|++.||+|+|..  ++... ...+...+......   ..+
T Consensus       216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~  290 (375)
T 2gfp_A          216 AAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPDWFG---VMN  290 (375)
T ss_dssp             HHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHHHHH---HHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhc---ccc
Confidence            333344444 466689999999987777777775 48999999999988333  33332 22222211111111   123


Q ss_pred             HHHHHHHHHHHHhchhhhhhhHHHHHhhcccCCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          106 YWLLWIALCVATNSSAWLGTAVLVTNMRNFPLSRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       106 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      .+.+++..++.|++.+..+......+.+.+|++||++.|+......+|..+.+.+...+.+
T Consensus       291 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  351 (375)
T 2gfp_A          291 VWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQ  351 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5555556666777777777777788899999889999999998888888877666655543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.74  E-value=0.00012  Score=75.03  Aligned_cols=104  Identities=8%  Similarity=-0.053  Sum_probs=68.0

Q ss_pred             cccccccc----cccC----chHHHHHHHHHHHHHHHHHHHHHhcc--cCchhHHHHHHHHHHHHhchhhhhhhHHHHHh
Q 013969           63 GLLPGLAS----NKFP----PWLVLFIGSLACFFGYGVLWLAVSRT--VESLPYWLLWIALCVATNSSAWLGTAVLVTNM  132 (433)
Q Consensus        63 ~~~~G~l~----Dr~G----~r~~~~ig~~l~~~g~~~~~~~~~~~--~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~  132 (433)
                      .++.|++.    ||.|    +++.+.+|.++.+++++.+.......  ....+.+.+.+..++.|++.+..+......+.
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  431 (524)
T 2xut_A          352 IPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAY  431 (524)
T ss_dssp             GGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred             HHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666654    5554    34667778888777776543311000  00113455555666778888777777778889


Q ss_pred             hccc-CCchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969          133 RNFP-LSRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus       133 ~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      +.+| ++||+++|+.....++|+.+.+.+...+.+
T Consensus       432 ~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          432 SQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9998 469999999999999999998888776664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	433
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.82
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.33
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.87
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.6

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.3e-20  Score=187.30  Aligned_cols=288  Identities=14%  Similarity=0.086  Sum_probs=191.6

Q ss_pred             CChHhHHHHHHHHHHh-hhhhhhhccHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHH
Q 013969           10 PPWVGLGAAVWVQIAA-GNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACF   87 (433)
Q Consensus        10 ~~w~~l~~~~l~~~~~-g~~y~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~   87 (433)
                      .||.+++..++..+.. .....+++..|.++ ++|+|.+|++++.+...++.. ..++.|++.||+|||+++.++.++.+
T Consensus        22 ~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~  100 (447)
T d1pw4a_          22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  100 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            3577766655544333 23456777777765 589999999998888888875 48999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCchhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccC-CchhHHHHHHhhhhhHHHHHHHHHHHHhc
Q 013969           88 FGYGVLWLAVSRTVESLPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPL-SRGTVAGILKGYGGLSAAVFTEIYNMLLH  166 (433)
Q Consensus        88 ~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~  166 (433)
                      ++.+++......   ..+++.+++.+++.|++.+..+.+....+.+|+|+ +||++.|+...+.++|..+.+.+......
T Consensus       101 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_         101 AVMLFMGFVPWA---TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             HHHHHHHHCHHH---HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHhhccccchh---hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence            988866542211   11356777788899999888888889999999985 59999999999999998887766554442


Q ss_pred             --CChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHH
Q 013969          167 --NSSSKLLLVLAVGVPAVCLVMMYFVRPCTPASGEDSAAPSHFLFTQAASVVLGFFLLTTTILDHMIPLSASISYASLF  244 (433)
Q Consensus       167 --~~~~~~l~~~a~~~~~v~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  244 (433)
                        .+|+..+.+.+++..++.++..+++++.|++.....                                          
T Consensus       178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------  215 (447)
T d1pw4a_         178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP------------------------------------------  215 (447)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS------------------------------------------
T ss_pred             hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccch------------------------------------------
Confidence              244444444444444444444444444433211000                                          


Q ss_pred             HHHHHHHhhhhhhhhhhhhccccCcccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHhh
Q 013969          245 IMIILLMAPLAIPVKMTICRKRTSESGILDQSVGSSDSVVRAGGDADKSEPLLDPSSSTTDLGSFRDNDDVSEVALLLAE  324 (433)
Q Consensus       245 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (433)
                                            .++                    .+...+                 ++.++       
T Consensus       216 ----------------------~~~--------------------~~~~~~-----------------~~~~~-------  229 (447)
T d1pw4a_         216 ----------------------IEE--------------------YKNDYP-----------------DDYNE-------  229 (447)
T ss_dssp             ----------------------CTT--------------------TCCC-------------------------------
T ss_pred             ----------------------hhh--------------------hhhhcc-----------------cchhh-------
Confidence                                  000                    000000                 00000       


Q ss_pred             cccccccccCCCCCCCCCcHHHHhhhhhHHHHHHHHHhhcccceeeecchhhHHHhh-cCCcc--chhHHHHHHhHHHHh
Q 013969          325 GEGAVRRKKRRPKRGEDFKFTEAVVKADFWLLFLVYFAGVGSGVTVLNNLAQIGIAQ-GVHDT--TILLSLFSFCNFVGR  401 (433)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g~~~i~n~~~i~~s~-G~~~~--~~~vsl~si~n~~GR  401 (433)
                        .    .++ +...++...++.++++.+|.+....++.......+.+....+..+. |.+..  ....+++.+.+.+|+
T Consensus       230 --~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (447)
T d1pw4a_         230 --K----AEQ-ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT  302 (447)
T ss_dssp             -------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             --c----ccc-ccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhh
Confidence              0    000 0011234556788999999999888877766666666565555554 55543  578899999999999


Q ss_pred             hhcccchHHHHHhhh
Q 013969          402 LGGGVVSEHFVRLVQ  416 (433)
Q Consensus       402 l~~G~lsD~~~~~~~  416 (433)
                      ++.|+++||++++..
T Consensus       303 ~~~g~~~~~~~~~~~  317 (447)
T d1pw4a_         303 LLCGWMSDKVFRGNR  317 (447)
T ss_dssp             HHHHHHHHHTSTTCH
T ss_pred             hhhhhhhhhcccccc
Confidence            999999999987643

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=4.5e-12  Score=121.61  Aligned_cols=126  Identities=12%  Similarity=0.023  Sum_probs=79.0

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHH
Q 013969           37 SLKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCV  115 (433)
Q Consensus        37 ~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l  115 (433)
                      .+++++|+|.+|++++.+...++.. ..++.|+++||+|||++++++.+...++...+.......   ......++...+
T Consensus        33 ~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  109 (417)
T d1pv7a_          33 WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP---LLQYNILVGSIV  109 (417)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHH---HHHTTCHHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHH
Confidence            4788999999999998888888875 599999999999999999999888888776655421110   011112223334


Q ss_pred             HHhchhhhhhhHHHHHhhccc---CCchhHHHHHHhhhhhHHHHHHHHHHHHh
Q 013969          116 ATNSSAWLGTAVLVTNMRNFP---LSRGTVAGILKGYGGLSAAVFTEIYNMLL  165 (433)
Q Consensus       116 ~g~g~g~~~~~~~~~~~~~Fp---~~RG~a~gi~~~~~glg~~i~~~l~~~~~  165 (433)
                      .+.+.+..+.+.........+   +++..+.+......+.+..+.+.+...+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  162 (417)
T d1pv7a_         110 GGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF  162 (417)
T ss_dssp             TTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccc
Confidence            444444444444333333332   23555666655666666655555444443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=3.2e-09  Score=101.13  Aligned_cols=147  Identities=9%  Similarity=0.020  Sum_probs=108.7

Q ss_pred             CCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHhchh
Q 013969           43 GFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVESLPYWLLWIALCVATNSSA  121 (433)
Q Consensus        43 g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g  121 (433)
                      +.+....+.......++.. ..++.|++.||+|+|+++.++.++.+++++.+..       .++.+.+.+..++.|++.+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~~  327 (417)
T d1pv7a_         255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-------ATSALEVVILKTLHMFEVP  327 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-------CCCHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc-------ccccchhhHHHHHHHHHHH
Confidence            3344445555555545554 4899999999999999999999998888775543       1235666677777888888


Q ss_pred             hhhhhHHHHHhhcccC-CchhHHHHHH-hhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 013969          122 WLGTAVLVTNMRNFPL-SRGTVAGILK-GYGGLSAAVFTEIYNMLLHN-SSSKLLLVLAVGVPAVCLVMMYFVRPCTP  196 (433)
Q Consensus       122 ~~~~~~~~~~~~~Fp~-~RG~a~gi~~-~~~glg~~i~~~l~~~~~~~-~~~~~l~~~a~~~~~v~l~~~~~~r~~~~  196 (433)
                      ..+......+.+.+|+ +||++.|+.. ...++|.++.+.+...+.+. ++...+.+.+++.++.+++..+++|.+.+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~  405 (417)
T d1pv7a_         328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence            8888888889999995 5999999854 45678888888887777753 55566667777777777888888876644

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=4.3e-07  Score=88.03  Aligned_cols=151  Identities=15%  Similarity=-0.038  Sum_probs=93.4

Q ss_pred             hhhhhhhccHHH-HHHHhCCCHHHHHHHHHHHHHHhh-ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 013969           26 GNAYNFPLYSHS-LKSVLGFNQHQLTMLGVANDIGEN-VGLLPGLASNKFPPWLVLFIGSLACFFGYGVLWLAVSRTVES  103 (433)
Q Consensus        26 g~~y~~s~~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~ig~~l~~~g~~~~~~~~~~~~~~  103 (433)
                      ...+.+..+.+. +++.++++..+.+.......+... ..++.|++.||+++|.......+...+...........  ..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  340 (447)
T d1pw4a_         263 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN--PA  340 (447)
T ss_dssp             HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC--CT
T ss_pred             hhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhc--cc
Confidence            334555555555 467789999999987666666664 48999999999998765555444443333322221111  12


Q ss_pred             hhHHHHHHHHHHHHhchhhhhhhHHHHHhhcccCC-chhHHHHHHhhhhhHHHHHHHHHH-HHhcC-ChhHHHHHHHH
Q 013969          104 LPYWLLWIALCVATNSSAWLGTAVLVTNMRNFPLS-RGTVAGILKGYGGLSAAVFTEIYN-MLLHN-SSSKLLLVLAV  178 (433)
Q Consensus       104 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~-~~~~~-~~~~~l~~~a~  178 (433)
                      .+.+...++.++.|++.+...........+.+|++ ||++.|+......+++.+.+++.. .+.+. ++...+.+.++
T Consensus       341 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~  418 (447)
T d1pw4a_         341 GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG  418 (447)
T ss_dssp             TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence            23555555556667666665666667788999965 999999987766676666555444 44443 33333333333