Citrus Sinensis ID: 013999

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
Protein Sequence
MSSTSVREFVLKEVPDWNDEVIATARFKAFSGQRSDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEVECERPKPTVSKTGVNEPAASESAESLRVAFSTIGLNDGQATALAISDTVVPDRSNESKHPMLESA
Secondary Structure (PSIPRED)
cccHHHHHHHHccccccccHHHHcHHcccccccccccHHHHHHHHHHHHHHHHHcccEEEccHHHHHHHHHccccccccHHHHHHHHHHcccEEEccccccccccccHHHHHHHcccccccccccccccccEEEEHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHcccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccEEEcHHHHHHHHHHccccccccHHHHHHHHHHcccEEEcccccccccccHHHHHHcHHHHHcccccccccccHHcEEHHHHHHHHHHHHHHHHHHcccccccEEEHHHHHHHcccccHHHHHHHHHHHcccEEEEEEEccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHcEcccccccccEEEccccccccccccccccccc
Coil and Loop (DISEMBL)
MSSTSVREFVLkevpdwndEVIATARFKafsgqrsdwepkFQFWKNLILKIARHFSLaiihpsqvknewfnrggltplcfdDVLFVMYNegdvvrsvdlvdaASGRLTQLFRKVRSLMarsaatpeiLLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKfqdkcggqdeASAVLSFLTGRGKALYLSISkneftegvkvslspaavssisslDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKvivpsytgiddeDIEEEFKKLEQEvecerpkptvsktgvnepaaseSAESLRVAFSTiglndgqatalaisdtvvpdrsneskhpmlesa
Flexible Loop (DISEMBL)
msstsvrefvlkevpdwndevIATARFKafsgqrsdwePKFQFWKNLILKIARHFSLAIIHPSQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMarsaatpeillkDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAkqlkltkesrekCTSLLNRVEEVLSLIenaestkkvsEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEqevecerpkptvsktgvnepaaseSAESLRVAFSTIGLNDGQATALAIsdtvvpdrsneskhpmlesa
Low Complexity Region (SEG)
MSSTSVREFVLKEVPDWNDEVIATARFKAFSGQRSDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLTGRGKALYLSISKNEFTEGVKvslspaavssisslDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISVeelqlcleeleeSIDLQKQAEKVIVPSYTGIddedieeefkkleqeveceRPKPTVSKTGVNEPAASESAESLRVAFSTIGLNDGQATALAISDTVVPDRSNESKHPMLESA
Disordered region (IsUnstruct)
*******EFVLKEVPDWNDEVIATARFKAFSGQRSDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEM*********************************CTSLLNRVEEVLSLIEN******VSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGI*******************************************VAFSTIGLNDGQATALAI********************
Disordered Region (DISOPRED)
******R**VLKEVPDWNDEVIATARFKAFSGQRSDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMA*******ILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLTGRGKALYLSISKNE***********************VLHLIWTVEK***Q**IIDRHY*********************HAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQ*************EELQLCLEELEESIDLQKQA*************EDIEEEFKKL*********************************************************************
Disordered Region (DISEMBL)
MSSTSVREFVLKEVPDWNDEVIATARFKAFSGQRSDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKL*****************************LRVAFSTIGLNDGQATALAISDTVV***************
Disordered Region (DISPRO)
****SVREFVLKEVPDWNDEVIATARFKAFSGQRSDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEVEC***************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSTSVREFVLKEVPDWNDEVIATARFKAFSGQRSDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKVIVPSYTGIDDEDIEEEFKKLEQEVECERPKPTVSKTGVNEPAASESAESLRVAFSTIGLNDGQATALAISDTVVPDRSNESKHPMLESA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	432	2.2.26 [Sep-21-2011]
Q5FW14	468	Charged multivesicular bo	yes	no	0.780	0.720	0.278	1e-17
Q7T0X5	422	Charged multivesicular bo	N/A	no	0.803	0.822	0.254	2e-17
Q8R1T1	451	Charged multivesicular bo	yes	no	0.819	0.784	0.234	5e-17
Q8WUX9	453	Charged multivesicular bo	yes	no	0.812	0.774	0.233	6e-17
Q5R812	453	Charged multivesicular bo	yes	no	0.812	0.774	0.233	6e-17
Q6PBQ2	457	Charged multivesicular bo	yes	no	0.759	0.717	0.228	2e-16
Q5ZJB7	448	Charged multivesicular bo	yes	no	0.791	0.763	0.234	2e-13
P0C0A3	200	Charged multivesicular bo	no	no	0.414	0.895	0.279	0.0002
Q96FZ7	201	Charged multivesicular bo	no	no	0.428	0.920	0.255	0.0004
Q5R861	201	Charged multivesicular bo	no	no	0.356	0.766	0.256	0.0006

>sp|Q5FW14|CHMP7_XENTR Charged multivesicular body protein 7 OS=Xenopus tropicalis GN=chmp7 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 172/384 (44%), Gaps = 47/384 (12%)

Query: 15  PDWNDEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEWF 70
           P+W+D+   +  F AF   R    SDW+ K +FW  LILK AR   L  I  SQ++ + F
Sbjct: 9   PEWDDDERMSFLFSAFKQTRDVNTSDWDGKMKFWIPLILKHARAQGLLSISLSQLERD-F 67

Query: 71  NRGGLTPLCFDDVLFVMYNEGDVVRSVDLV-DAASGRLTQLFRK--VRSLM--------- 118
            R G  PL    V+  M  +G + +  D V + +SG L+   R+  +R L          
Sbjct: 68  RRKGFAPLGLRIVIQEMMRQGTLRKESDYVSNVSSGWLSWGMRQLVIRPLRWTIGTVLGS 127

Query: 119 ----ARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQD 174
                     PEI+ +   ++++  +      + LLSE    + C        + C    
Sbjct: 128 QMGPDEPLVIPEIIKERAALVLQRYQSSPLRALPLLSEEEVRTLCA-------EICPNPS 180

Query: 175 EASAVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWT----VE 230
             + VL  L G  K   L  +  +  + V+VS+    V  IS  D  +  L  +     E
Sbjct: 181 ALNLVLLQLQGDKKICVLERAGKKLVKFVRVSV--GQVDPISESDLGIYELQQSEKLLSE 238

Query: 231 KLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNR---VE 287
           +LQ   +  DR  E +R    A    GNK  ALR  ++ KL +    + T L N+   V+
Sbjct: 239 RLQSAGEESDRLTEEARTYNRA----GNKHQALRCLRKRKLLER---RITELQNKQDTVQ 291

Query: 288 EVLSLIENAESTKKVSEAIQIGAQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIV 345
            +L  I  AE+ +KV  A Q+G  A+K     +++E+ +  +++++E  DLQ    + + 
Sbjct: 292 GILERIAAAETDRKVVSAYQMGVSALKLALKDVTMEKAESIVDQIQEYCDLQDDLSQTLA 351

Query: 346 P-SYTGIDDEDIEEEFKKLEQEVE 368
             S   ID ED+E+E   + Q  E
Sbjct: 352 SVSDADIDSEDLEKELNDILQNKE 375

Plays a role in the endosomal sorting pathway.
Xenopus tropicalis (taxid: 8364)

>sp|Q7T0X5|CHMP7_XENLA Charged multivesicular body protein 7 OS=Xenopus laevis GN=chmp7 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 171/374 (45%), Gaps = 27/374 (7%)

Query: 15  PDWNDEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEWF 70
           P+W D+   +  F AF   R     DW+ K +FW  LIL  AR   L  I  SQ++N+ F
Sbjct: 9   PEWEDDERMSFLFSAFKRTRDVNTCDWDGKMKFWIPLILTHARAQGLLSITLSQLEND-F 67

Query: 71  NRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDA-ASGRLTQLFRK--VRSL------MARS 121
            R G  P+    V+  M  +G + +  D V   +SG L+   R+  +R L      M  S
Sbjct: 68  RRKGCAPMGLRTVIQEMIRQGTLRKETDFVSGVSSGWLSWGMRQLVIRPLRWTIGTMLGS 127

Query: 122 AATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQ----DKCGGQDEAS 177
              P+    + +++ EV+K++A  V++    S + S  ++  ++      + C      +
Sbjct: 128 QVGPD----EPLVIPEVIKERAALVLQRYQSSTFRSFPLLCEEEVHTLCAEICPNPSALN 183

Query: 178 AVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLD 237
            VL  L G  K   L  +  +  + V+VS+    V  IS  D  +  L    + L  +L 
Sbjct: 184 LVLLQLQGDKKICVLERAGQKLVKFVRVSV--GQVEPISESDLGIYQLQQGEKLLSERLQ 241

Query: 238 IIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAE 297
                     + A     +GNK  ALR  ++ KL +    +  +  + ++ +L  I  AE
Sbjct: 242 SAGEESNRLTEEARTYNRAGNKNQALRCLRKRKLVERRITELQNKQDNIQGILERISAAE 301

Query: 298 STKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVP-SYTGIDDE 354
           + +KV  A Q+G  A+K+    +++E+ +  +++++E  DLQ    + +   +   +D +
Sbjct: 302 TDRKVVSAYQMGVSALKQALKDVTLEKAESIVDQIQEYCDLQDDLSQTLSSVTDADVDSD 361

Query: 355 DIEEEFKKLEQEVE 368
           D+E E  ++ Q  E
Sbjct: 362 DLERELNEILQNEE 375

Plays a role in the endosomal sorting pathway.

Xenopus laevis (taxid: 8355)

>sp|Q8R1T1|CHMP7_MOUSE Charged multivesicular body protein 7 OS=Mus musculus GN=Chmp7 PE=1 SV=1

 Score = 89.4 bits (220), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 176/375 (46%), Gaps = 21/375 (5%)

Query: 15  PDWN-DEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEW 69
           P+W  DE   +  F AF   R    +DW+ K  FW  L+L  +R   +  +    ++ E 
Sbjct: 22  PEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLVLSHSRRQGVVRLRLRDLQ-EA 80

Query: 70  FNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAAS------GRLTQLFRKVRSLMARSAA 123
           F R G  PL    VL  +   G++ R  D + +        G    L + ++  ++    
Sbjct: 81  FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG 140

Query: 124 TPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLS 181
             ++  ++ ++ +E+LK+KA+EV +L   S  +S  ++ + +    C     DE +  L 
Sbjct: 141 DHKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSALCANSCPDERTFYLV 200

Query: 182 FLTGRGKALYLSISKNEFTEGVKVSLSP-AAVSSISSLDYDVLHLIWTVEKLQLQLDIID 240
            L  + K   +++ +    + VK +  P A VS ++ +D  V  L+ + + L  +++ + 
Sbjct: 201 LLQLQ-KEKRVTVLEQNGEKIVKFARGPHAKVSPVNDVDVGVYQLMQSEQLLSRKVESLS 259

Query: 241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
           +  E  ++ A  +  +G K +ALR  K  + T++  E   + L+ V+ +L  I  +++ +
Sbjct: 260 QESERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQ 319

Query: 301 KVSEAIQIGAQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTG---IDDED 355
            V  A Q G  A+K     ++VE+ +  +++++E  D Q +  + +    T     D E+
Sbjct: 320 MVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEE 379

Query: 356 IEEEFKKLEQEVECE 370
           +E+E   L Q+   E
Sbjct: 380 LEKELDILLQDTTTE 394

Plays a role in the endosomal sorting pathway.

Mus musculus (taxid: 10090)

>sp|Q8WUX9|CHMP7_HUMAN Charged multivesicular body protein 7 OS=Homo sapiens GN=CHMP7 PE=1 SV=1

 Score = 89.4 bits (220), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 175/372 (47%), Gaps = 21/372 (5%)

Query: 15  PDWN-DEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEW 69
           P+W  DE   +  F AF   R    +DW+ K  FW  L+L  +R   +  +    ++ E 
Sbjct: 22  PEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLVLSHSRRQGVVRLRLRDLQ-EA 80

Query: 70  FNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAAS------GRLTQLFRKVRSLMARSAA 123
           F R G  PL    VL  +   G++ R  D + +        G    L + ++  ++    
Sbjct: 81  FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG 140

Query: 124 TPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLS 181
             ++  ++ ++ +E+LK+KA+EV +L   S  +S  ++ + +    C     DE +  L 
Sbjct: 141 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV 200

Query: 182 FLTGRGKALYLSISKNEFTEGVKVSLSP-AAVSSISSLDYDVLHLIWTVEKLQLQLDIID 240
            L  + K   +++ +    + VK +  P A VS ++ +D  V  L+ + + L  +++ + 
Sbjct: 201 LLQLQ-KEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLS 259

Query: 241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
           +  E  ++ A  +  +G K +ALR  K  + T++  E   + L+ V+ +L  I  +++ +
Sbjct: 260 QEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQ 319

Query: 301 KVSEAIQIGAQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTG---IDDED 355
            V  A Q G  A+K     ++VE+ +  +++++E  D Q +  + +    T     D E+
Sbjct: 320 MVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEE 379

Query: 356 IEEEFKKLEQEV 367
           +E+E   L Q+ 
Sbjct: 380 LEKELDILLQDT 391

Plays a role in the endosomal sorting pathway.

Homo sapiens (taxid: 9606)

>sp|Q5R812|CHMP7_PONAB Charged multivesicular body protein 7 OS=Pongo abelii GN=CHMP7 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 175/372 (47%), Gaps = 21/372 (5%)

Query: 15  PDWN-DEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEW 69
           P+W  DE   +  F AF   R    +DW+ K  FW  L+L  +R   +  +    ++ E 
Sbjct: 22  PEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLVLSHSRRQGVVRLRLRDLQ-EA 80

Query: 70  FNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAAS------GRLTQLFRKVRSLMARSAA 123
           F R G  PL    VL  +   G++ R  D + +        G    L + ++  ++    
Sbjct: 81  FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG 140

Query: 124 TPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLS 181
             ++  ++ ++ +E+LK+KA+EV +L   S  +S  ++ + +    C     DE +  L 
Sbjct: 141 DNKVPAEEVLVAVELLKEKAEEVYRLYQSSPLSSHPVVALSELSTLCANSCPDERTFYLV 200

Query: 182 FLTGRGKALYLSISKNEFTEGVKVSLSP-AAVSSISSLDYDVLHLIWTVEKLQLQLDIID 240
            L  + K   +++ +    + VK +  P A VS ++ +D  V  L+ + + L  +++ + 
Sbjct: 201 LLQLQ-KEKRVTVLEQNGEKIVKFARGPHAKVSPVNDVDVGVYQLMQSEQLLSRKVESLS 259

Query: 241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
           +  E  ++ A  +  +G K +ALR  K  + T++  E   + L+ V+ +L  I  +++ +
Sbjct: 260 QEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQ 319

Query: 301 KVSEAIQIGAQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTG---IDDED 355
            V  A Q G  A+K     ++VE+ +  +++++E  D Q +  + +    T     D E+
Sbjct: 320 MVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEE 379

Query: 356 IEEEFKKLEQEV 367
           +E+E   L Q+ 
Sbjct: 380 LEKELDILLQDT 391

Plays a role in the endosomal sorting pathway.

Pongo abelii (taxid: 9601)

>sp|Q6PBQ2|CHMP7_DANRE Charged multivesicular body protein 7 OS=Danio rerio GN=chmp7 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 170/345 (49%), Gaps = 17/345 (4%)

Query: 15  PDWNDEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEWF 70
           PDW+D+   +  F AF   R    +DW+ K  FW  LI++  R      ++  Q  NE F
Sbjct: 14  PDWDDDERMSFLFSAFKENRDVDCTDWDGKIDFWSPLIIEHCRRCGSVCVN-LQDLNENF 72

Query: 71  NRGGLTPLCFDDVLFVMYNEGDVVRSVDLV-DAASGRLTQ-----LFRKVRSLMARSAAT 124
            R G  PL    V+  M   G V +  D   +  SG L+      L R ++  ++    +
Sbjct: 73  RRKGSVPLGLSTVIQSMIRSGKVQKESDFAANVDSGWLSWGVGLLLVRPLKWTLSALLGS 132

Query: 125 PEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCG--GQDEASAVLSF 182
             + L++  +++E++K+KA E++     S  ++  +++ ++ +        DE++  ++ 
Sbjct: 133 GRVPLEESFVVIELVKEKAAELLAAYRGSALSARSLLSFQELRSLSSHICPDESTLCMAL 192

Query: 183 LTGRGKALYLSISKNEFTEGVKVSLSPAA-VSSISSLDYDVLHLIWTVEKLQLQLDIIDR 241
           L  + +  ++++S +E  + VK S +    VS +S +D  +  L  + + L+ +++ +  
Sbjct: 193 LQLQ-REKHVTVSLHEGEKLVKFSQAGQGRVSPVSEVDLGIYQLQCSEKLLEERVEALGH 251

Query: 242 HYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKK 301
             E  ++ A + L  G K+ ALR  +  K  ++  ++  + L  V+ +L  I N+++ + 
Sbjct: 252 EAEKCKQQAKSLLKEGKKSQALRCLRGSKRVEKKADRLFAQLETVKGILDRIANSQTDRL 311

Query: 302 VSEAIQIGAQAIKKN--KISVEELQLCLEELEESIDLQKQAEKVI 344
           V +A Q G  A++ +   ++VE  +  +++++E  D Q +  + +
Sbjct: 312 VMQAYQAGVAALRISLKGVTVERAENLVDQIQELCDTQDEVNQTL 356

Plays a role in the endosomal sorting pathway.

Danio rerio (taxid: 7955)

>sp|Q5ZJB7|CHMP7_CHICK Charged multivesicular body protein 7 OS=Gallus gallus GN=CHMP7 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 175/380 (46%), Gaps = 38/380 (10%)

Query: 15  PDW--NDEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNE 68
           P+W  +DE +A   F AF   R    ++W+ K  FW  L+L   R   +      +++N 
Sbjct: 19  PEWETDDERMAFL-FSAFKQSREVNSTEWDSKMAFWVGLVLARGRRRGVVRTCLRELQN- 76

Query: 69  WFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGR----------LTQLFRKVRSLM 118
            F R G  PL    VL  +   G + R  D + +              L  L   + S++
Sbjct: 77  GFERRGSVPLGLGTVLRELLRRGKMQRESDFMASVDSSWISWGVGVFILKPLKWTLSSVL 136

Query: 119 ARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGG--QDEA 176
             S    E   ++ +I +E+L++KA+EV +L   S  +S  ++ + + +  C G   DE 
Sbjct: 137 GDSKVPEE---EEVLIYVELLQEKAEEVYRLYQNSVLSSHPVVALSELRSLCAGVCPDER 193

Query: 177 SAVLSFLTGRGKALYLSISKN-----EFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEK 231
           +  L  L  + +     + +N     +F  G+   +SP     ++ +D  V  L+ + + 
Sbjct: 194 TFYLLLLQLQKEKKVTILEQNGEKIVKFARGLHAKVSP-----MNDVDIGVYQLMQSEQL 248

Query: 232 LQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLS 291
           L  +++ + +  E  +  A ++  +G K +ALR  K  + T+   E+  S L+ V+ +L 
Sbjct: 249 LSQKVESLSQEAEKCKDDARSACRAGKKQLALRCLKSKRRTERRIEELHSKLDAVQGILD 308

Query: 292 LIENAESTKKVSEAIQIGAQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYT 349
            I  +++ + V  A Q G  A+K     ++VE+ +  +++++E  D Q +  + +  +  
Sbjct: 309 RIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAENLVDQIQELCDTQDEVAQTLAGAGV 368

Query: 350 G---IDDEDIEEEFKKLEQE 366
               +D E++E+E   L Q+
Sbjct: 369 NGLEMDSEELEKELDSLLQD 388

Plays a role in the endosomal sorting pathway.

Gallus gallus (taxid: 9031)

>sp|P0C0A3|CHMP6_MOUSE Charged multivesicular body protein 6 OS=Mus musculus GN=Chmp6 PE=2 SV=2

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 18/197 (9%)

Query: 213 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 272
           S ++  D  +L L    +KL+     + +  E  R  A   L  G K      AK L   
Sbjct: 11  SRVTEQDRAILQLKQQRDKLRQYQKRVTQQLERERALARQLLRDGRKE----RAKLLLKK 66

Query: 273 KESREKCTSLLNRVEEVLS----LIENAESTK---KVSEAIQIGAQAIKK--NKISVEEL 323
           K  RE+   LL+R E  +S    ++++ E T+   KV E +Q+G + + K    +S+EE+
Sbjct: 67  KRYREQ---LLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQVGNECLNKMHQVMSIEEV 123

Query: 324 QLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQE-VEC-ERPKPTVSKTGV 381
           +  L+E +E+++ Q+Q ++++  ++T  D++ I EE   + QE +E  E P   +     
Sbjct: 124 ERILDETQEAVEYQRQIDELLAGNFTQEDEDAILEELNAITQEQMELPEVPSEPLPDRNP 183

Query: 382 NEPAASESAESLRVAFS 398
             PA + S ++  VA S
Sbjct: 184 EAPAKARSRQAELVAAS 200

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. In the ESCRT-III complex, it probably serves as an acceptor for the ESCRT-II complex on endosomal membranes.

Mus musculus (taxid: 10090)

>sp|Q96FZ7|CHMP6_HUMAN Charged multivesicular body protein 6 OS=Homo sapiens GN=CHMP6 PE=1 SV=3

 Score = 46.6 bits (109), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 94/192 (48%), Gaps = 7/192 (3%)

Query: 213 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 272
           S ++  D  +L L    +KL+     I +  E  R  A   L  G K  A    K+ +  
Sbjct: 11  SRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQ 70

Query: 273 KESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEEL 330
           ++  ++  + ++ +E ++  IE  +   KV E +Q G + + K    +S+EE++  L+E 
Sbjct: 71  EQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDET 130

Query: 331 EESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEVECERP----KPTVSKTGVNEPAA 386
           +E+++ Q+Q ++++  S+T  D++ I EE   + QE + E P    +P   K   N P  
Sbjct: 131 QEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQE-QIELPEVPSEPLPEKIPENVPVK 189

Query: 387 SESAESLRVAFS 398
           +   ++  VA S
Sbjct: 190 ARPRQAELVAAS 201

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. In the ESCRT-III complex, it probably serves as an acceptor for the ESCRT-II complex on endosomal membranes.

Homo sapiens (taxid: 9606)

>sp|Q5R861|CHMP6_PONAB Charged multivesicular body protein 6 OS=Pongo abelii GN=CHMP6 PE=2 SV=3

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 213 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 272
           S ++  D  +L L    +KL+     I +  E  R  A   L  G K  A    K+ +  
Sbjct: 11  SRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQ 70

Query: 273 KESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEEL 330
           ++  ++  + ++ +E ++  IE  +   KV E +Q G + + K    +S+EE++  L+E 
Sbjct: 71  EQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDET 130

Query: 331 EESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQE 366
           +E+++ Q+Q ++++  S+T  D++ I EE   + QE
Sbjct: 131 QEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQE 166

Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. In the ESCRT-III complex, it probably serves as an acceptor for the ESCRT-II complex on endosomal membrane.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
255548225	438	Protein CHMP7, putative [Ricinus communi	1.0	0.986	0.636	1e-154
359479983	478	PREDICTED: charged multivesicular body p	0.997	0.901	0.640	1e-149
297744076	438	unnamed protein product [Vitis vinifera]	0.997	0.984	0.640	1e-149
224068731	436	predicted protein [Populus trichocarpa]	0.995	0.986	0.645	1e-146
357511585	429	Charged multivesicular body protein [Med	0.923	0.930	0.626	1e-138
356572852	433	PREDICTED: charged multivesicular body p	0.958	0.956	0.614	1e-137
147768433	418	hypothetical protein VITISV_004029 [Viti	0.951	0.983	0.608	1e-135
449467433	440	PREDICTED: charged multivesicular body p	0.925	0.909	0.558	1e-120
449522224	440	PREDICTED: LOW QUALITY PROTEIN: charged	0.923	0.906	0.560	1e-119
297817552	423	SNF7 family protein [Arabidopsis lyrata	0.976	0.997	0.538	1e-118

>gi|255548225|ref|XP_002515169.1| Protein CHMP7, putative [Ricinus communis] gi|223545649|gb|EEF47153.1| Protein CHMP7, putative [Ricinus communis]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 279/438 (63%), Positives = 344/438 (78%), Gaps = 6/438 (1%)

Query: 1   MSSTSVREFVLKEVPDWNDEVIATARFKAFSGQRSDWEPKFQFWKNLILKIARHFSLAII 60
           M S+ V EF+ KEV DWN+EVIATARFKAFSGQRSDWEPK+QFW+NLILKIARH  L  I
Sbjct: 1   MDSSMVMEFICKEVSDWNEEVIATARFKAFSGQRSDWEPKYQFWRNLILKIARHLGLFTI 60

Query: 61  HPSQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMAR 120
            P QVKNEWFNRGGLTPLC D VLF+MY EGD++R+VD+VDA SGR +QL+RKV +L+ R
Sbjct: 61  RPCQVKNEWFNRGGLTPLCLDHVLFLMYTEGDIIRNVDVVDATSGRFSQLYRKVTNLVIR 120

Query: 121 SAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVL 180
           S  TP++LL+D++IL  +LK+KAD+VIKLLSE+HWT+SC++TM+KFQD CGG +EAS VL
Sbjct: 121 STTTPDLLLEDNLILTPLLKEKADQVIKLLSENHWTTSCVVTMRKFQDMCGGPNEASVVL 180

Query: 181 SFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIID 240
           S+ +G GKA YLS+ K EF EG+KVSLS A V +ISSLD+DVLHLIWT EKLQ Q+D+ID
Sbjct: 181 SYFSGVGKAQYLSVCKKEFVEGIKVSLSSALVPAISSLDFDVLHLIWTAEKLQQQIDVID 240

Query: 241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
           + YE+SR SALA L SGNK +ALRHA+ +KL  +SREKCTSL NRVEEVL++I +AESTK
Sbjct: 241 QRYELSRNSALAYLKSGNKKMALRHARDMKLASDSREKCTSLFNRVEEVLNIIADAESTK 300

Query: 301 KVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVI--VPSYTGIDDEDIEE 358
           KV+EAIQIGAQA+K+NKI+VEE+ LCLEELEE+ID QKQ EK +   PSYT I+DEDIEE
Sbjct: 301 KVTEAIQIGAQAMKQNKITVEEVDLCLEELEENIDSQKQVEKALESTPSYTVIEDEDIEE 360

Query: 359 EFKKLEQE---VECERPKPTVSKTGVN-EPAASESAESLRVAFSTIGLNDGQATALAISD 414
           EFKKLE E   V+ + P P +  +  + E   S S +SL  A S + L D          
Sbjct: 361 EFKKLEMEVGTVDLQSPVPRIGMSSTSGETDNSVSTDSLSDALSNLKLQDALPGDCTDQV 420

Query: 415 TVVPDRSNESKHPMLESA 432
            +   R+N+SK+  LE+A
Sbjct: 421 PLEATRTNDSKNLTLEAA 438

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479983|ref|XP_002273698.2| PREDICTED: charged multivesicular body protein 7 [Vitis vinifera]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 281/439 (64%), Positives = 339/439 (77%), Gaps = 8/439 (1%)

Query: 1   MSSTSVREFVLKEVPDWNDEVIATARFKAFSGQRSDWEPKFQFWKNLILKIARHFSLAII 60
           M S +VREF+ +EV DW +E IATARFKAFSGQRSDWE ++QFW++LILK+ARHF L  I
Sbjct: 41  MESEAVREFIRREVKDWEEEAIATARFKAFSGQRSDWEARYQFWRDLILKVARHFHLLFI 100

Query: 61  HPSQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMAR 120
             SQVK +WFNRGGLTPLC D VLF+MYNEGD++RSVDLVD  SGRL+QLFRKV+ +M R
Sbjct: 101 SSSQVKKDWFNRGGLTPLCLDHVLFLMYNEGDIIRSVDLVDPTSGRLSQLFRKVKHMMVR 160

Query: 121 SAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVL 180
           S  + E++ +DH+IL+ +LKDK  EV+K+LSES WTSSC+ITMKKFQD CGG  EASAVL
Sbjct: 161 ST-SAEVMFEDHLILLPLLKDKTVEVVKVLSESQWTSSCVITMKKFQDICGGTREASAVL 219

Query: 181 SFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIID 240
           S+L+G GKA YLSISK E  EGVKVSLS AAVS  +SLD DVLHL WT E LQ QLD+ID
Sbjct: 220 SYLSGCGKAQYLSISKKELIEGVKVSLSAAAVSGTTSLDLDVLHLTWTTENLQQQLDVID 279

Query: 241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
           +  E+S+K+ALASL+SGNK VALRHAK LKL  ESREKC S LNRVEEVLSLI NAESTK
Sbjct: 280 QRCEVSKKAALASLNSGNKKVALRHAKALKLASESREKCISFLNRVEEVLSLIANAESTK 339

Query: 301 KVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIV---PSYTGIDDEDIE 357
           KVSEAIQIGA+AI++N+I VEE+Q CL+EL +SID QKQ E+ +    PSY  I+DEDIE
Sbjct: 340 KVSEAIQIGARAIQENRIDVEEVQRCLQELGDSIDSQKQVEEALAESDPSYVDIEDEDIE 399

Query: 358 EEFKKLEQEVECERPKPTVSKTGVNEPA----ASESAESLRVAFSTIGLNDGQATALAIS 413
           EEF+KLE E+  +  +  VS+ GV+  A    ASES++SL  A S + L D       I 
Sbjct: 400 EEFRKLELELGNQNLQILVSQAGVDTAAGETEASESSKSLCDALSDLKLADNATRGSTIL 459

Query: 414 DTVVPDRSNESKHPMLESA 432
           ++    R N SK+  LE+A
Sbjct: 460 NSTGSKRDNISKNLKLEAA 478

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744076|emb|CBI37046.3| unnamed protein product [Vitis vinifera]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 281/439 (64%), Positives = 339/439 (77%), Gaps = 8/439 (1%)

Query: 1   MSSTSVREFVLKEVPDWNDEVIATARFKAFSGQRSDWEPKFQFWKNLILKIARHFSLAII 60
           M S +VREF+ +EV DW +E IATARFKAFSGQRSDWE ++QFW++LILK+ARHF L  I
Sbjct: 1   MESEAVREFIRREVKDWEEEAIATARFKAFSGQRSDWEARYQFWRDLILKVARHFHLLFI 60

Query: 61  HPSQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMAR 120
             SQVK +WFNRGGLTPLC D VLF+MYNEGD++RSVDLVD  SGRL+QLFRKV+ +M R
Sbjct: 61  SSSQVKKDWFNRGGLTPLCLDHVLFLMYNEGDIIRSVDLVDPTSGRLSQLFRKVKHMMVR 120

Query: 121 SAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVL 180
           S  + E++ +DH+IL+ +LKDK  EV+K+LSES WTSSC+ITMKKFQD CGG  EASAVL
Sbjct: 121 ST-SAEVMFEDHLILLPLLKDKTVEVVKVLSESQWTSSCVITMKKFQDICGGTREASAVL 179

Query: 181 SFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIID 240
           S+L+G GKA YLSISK E  EGVKVSLS AAVS  +SLD DVLHL WT E LQ QLD+ID
Sbjct: 180 SYLSGCGKAQYLSISKKELIEGVKVSLSAAAVSGTTSLDLDVLHLTWTTENLQQQLDVID 239

Query: 241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
           +  E+S+K+ALASL+SGNK VALRHAK LKL  ESREKC S LNRVEEVLSLI NAESTK
Sbjct: 240 QRCEVSKKAALASLNSGNKKVALRHAKALKLASESREKCISFLNRVEEVLSLIANAESTK 299

Query: 301 KVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIV---PSYTGIDDEDIE 357
           KVSEAIQIGA+AI++N+I VEE+Q CL+EL +SID QKQ E+ +    PSY  I+DEDIE
Sbjct: 300 KVSEAIQIGARAIQENRIDVEEVQRCLQELGDSIDSQKQVEEALAESDPSYVDIEDEDIE 359

Query: 358 EEFKKLEQEVECERPKPTVSKTGVNEPA----ASESAESLRVAFSTIGLNDGQATALAIS 413
           EEF+KLE E+  +  +  VS+ GV+  A    ASES++SL  A S + L D       I 
Sbjct: 360 EEFRKLELELGNQNLQILVSQAGVDTAAGETEASESSKSLCDALSDLKLADNATRGSTIL 419

Query: 414 DTVVPDRSNESKHPMLESA 432
           ++    R N SK+  LE+A
Sbjct: 420 NSTGSKRDNISKNLKLEAA 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068731|ref|XP_002302811.1| predicted protein [Populus trichocarpa] gi|222844537|gb|EEE82084.1| predicted protein [Populus trichocarpa]

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 281/435 (64%), Positives = 346/435 (79%), Gaps = 5/435 (1%)

Query: 2   SSTSVREFVLKEVPDWNDEVIATARFKAFSGQRSDWEPKFQFWKNLILKIARHFSLAIIH 61
           S +SV+EF+ K+VPDW+DE++ATARFKAFSGQRSDWEPK+ FWK+LILKIARH  L II 
Sbjct: 3   SVSSVKEFIRKQVPDWDDEIMATARFKAFSGQRSDWEPKYLFWKDLILKIARHLDLFIIQ 62

Query: 62  PSQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMARS 121
           PSQVK +WFNRGGLTPLC D VL +MYNEGD+VR+VDLVD +SGR++QLFRKVR+LM RS
Sbjct: 63  PSQVKEKWFNRGGLTPLCLDHVLCLMYNEGDIVRNVDLVDPSSGRISQLFRKVRNLMVRS 122

Query: 122 AATPEI-LLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVL 180
             TPEI +L+DH+ L  +LKDK  ++IK LSESHWTSSCIITM KFQ  CGG  EA+ +L
Sbjct: 123 PVTPEIIMLEDHLFLTPLLKDKTAQIIKCLSESHWTSSCIITMSKFQGMCGGPSEAAPLL 182

Query: 181 SFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIID 240
           S+L+G GKA Y SISK E  EGVK+SLS A+V +ISSLD DVLHLIWT +KL+ Q+D+ID
Sbjct: 183 SYLSGLGKAQYFSISK-EVIEGVKISLSSASVPAISSLDLDVLHLIWTAQKLEDQIDVID 241

Query: 241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
           R YEMSRKSALASL+SGNK VALRHA+++KL  ESRE+CTSLLNRVEEVL++I NAEST+
Sbjct: 242 RRYEMSRKSALASLNSGNKKVALRHAREMKLALESRERCTSLLNRVEEVLNVIANAESTQ 301

Query: 301 KVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIVPS-YTGIDDEDIEEE 359
           KV+EAI+IGA+A+K+NKI+VEE++ CLEELEESID QKQ EK +  +  +GI+DEDIEEE
Sbjct: 302 KVTEAIRIGAEAMKQNKITVEEVENCLEELEESIDAQKQVEKALESNPISGIEDEDIEEE 361

Query: 360 FKKLEQEVECERPKPTVSKTG--VNEPAASESAESLRVAFSTIGLNDGQATALAISDTVV 417
            +KLE E+E E  + +  + G    E  A  S +SL  A S + L+DG A       +  
Sbjct: 362 LEKLELELESENLQISKVEVGNTSGEMDALGSPDSLTDALSNLKLHDGSARGSVSQKSPF 421

Query: 418 PDRSNESKHPMLESA 432
           P R+  SKH MLE+A
Sbjct: 422 PTRTKNSKHAMLEAA 436

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511585|ref|XP_003626081.1| Charged multivesicular body protein [Medicago truncatula] gi|355501096|gb|AES82299.1| Charged multivesicular body protein [Medicago truncatula]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 253/404 (62%), Positives = 320/404 (79%), Gaps = 5/404 (1%)

Query: 5   SVREFVLKEVPDWNDEVIATARFKAFSGQRSDWEPKFQFWKNLILKIARHFSLAIIHPSQ 64
           +V++F+ KEVPDWNDEVIA ARFKAFSGQRSDW+P F FW+NLI+KIA HF   +I PSQ
Sbjct: 4   NVKDFIAKEVPDWNDEVIAVARFKAFSGQRSDWQPNFIFWRNLIIKIATHFGFLLIKPSQ 63

Query: 65  VKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMARSAAT 124
           VKN+WFNRGGLTPLC DDVL +MYNEGD+ R+ DLVD   GR +QL RK+ +L+ R  AT
Sbjct: 64  VKNDWFNRGGLTPLCIDDVLSLMYNEGDITRTGDLVDPTRGRFSQLVRKMTNLIIR-PAT 122

Query: 125 PEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLT 184
           P+I+ ++ V+L+ +LKDKA EV+K LSESHW SSCIITMKKFQ+ CGG DEAS +L +L+
Sbjct: 123 PDIMAEESVVLIPMLKDKAAEVVKHLSESHWNSSCIITMKKFQEICGGPDEASVMLRYLS 182

Query: 185 GRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYE 244
           G G   YLS+ KNEF EGVK+SLS AA+S  S+LD DVL+LIWT+EKLQ QLD+IDR  E
Sbjct: 183 GCGTTQYLSVLKNEFVEGVKISLSAAALSGASNLDCDVLYLIWTIEKLQQQLDVIDRRCE 242

Query: 245 MSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSE 304
           +SRKSA+ASLHSGN+ +ALR+A++LKL  +SREKC+SLLNRVEEV  ++ +AESTK VSE
Sbjct: 243 LSRKSAVASLHSGNRKLALRYARELKLVTQSREKCSSLLNRVEEVHGVVVDAESTKTVSE 302

Query: 305 AIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVI--VPSYTGIDDEDIEEEFKK 362
           A+QIGA+AIK+NKISVE++ +CL +L+ESID QK+ EK +   PSYT I+DEDIEEE ++
Sbjct: 303 AMQIGARAIKENKISVEDVDICLRDLQESIDSQKEVEKALEQTPSYTDINDEDIEEELEE 362

Query: 363 LEQEVECERPKPTVSKTGVNEP--AASESAESLRVAFSTIGLND 404
           LE  +E E    T+ KT  +E   A  E++E L    S + L+D
Sbjct: 363 LELALEKEAQVDTLEKTTTSEEGNATLEASELLSDTLSNLKLSD 406

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572852|ref|XP_003554579.1| PREDICTED: charged multivesicular body protein 7-like [Glycine max]

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 258/420 (61%), Positives = 322/420 (76%), Gaps = 6/420 (1%)

Query: 1   MSSTSVREFVLKEVPDWNDEVIATARFKAFSGQRSDWEPKFQFWKNLILKIARHFSLAII 60
           M S  + +F+ KEV DW+DE+IA ARFKAFSGQR DWEP F+FWK+ I+KIA HF L +I
Sbjct: 1   MDSLMLTDFIAKEVADWDDELIAVARFKAFSGQRCDWEPTFRFWKHFIIKIATHFGLLLI 60

Query: 61  HPSQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMAR 120
            PSQVKN+WFNRGGLTPLC DDVL +MYNEGD+ R+VDL D  SGR +QL R+V +L+ R
Sbjct: 61  RPSQVKNDWFNRGGLTPLCLDDVLSLMYNEGDITRTVDLEDPTSGRFSQLVRRVGNLITR 120

Query: 121 SAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVL 180
              TP+I+ +  VI+  +LKDKA EV+K LSESHW SSCI+TMKKFQD CGG DEAS +L
Sbjct: 121 -PPTPDIMAEQCVIVTAMLKDKAAEVVKHLSESHWNSSCIVTMKKFQDMCGGPDEASVML 179

Query: 181 SFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIID 240
            +L+G   A YLS++K +F EGVKVSLS  A+SSI++LDYDVLHLIWT EKLQLQLD+ D
Sbjct: 180 RYLSGCRTAQYLSVNKKDFLEGVKVSLSAGALSSITNLDYDVLHLIWTTEKLQLQLDVTD 239

Query: 241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
           R YE+ RKSALASL SGNK +AL +A++LKL  +SREKC+SLLNRVEEVLS+I +AESTK
Sbjct: 240 RRYELLRKSALASLQSGNKKLALNYARELKLVTQSREKCSSLLNRVEEVLSVIADAESTK 299

Query: 301 KVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVI--VPSYTGIDDEDIEE 358
           KV+EA+QIGA+AIK+NKISVE++ LCL +++ESID  K+ E  +  +PSY  I+DEDIEE
Sbjct: 300 KVTEAMQIGARAIKENKISVEDVDLCLRDIQESIDSHKEVENALERMPSYVDIEDEDIEE 359

Query: 359 EFKKLEQEVECERPKPTVSKTGVNEPA--ASESAESLRVAFSTIGLNDGQATALAISDTV 416
           EFKKLE  V  +   P + K   NE    ASE+A+ +   FS + L+D  A    I+  V
Sbjct: 360 EFKKLELAVGQDAQVPALEK-AFNEEGRMASEAADFISDTFSNLKLSDRPAEKPGITQAV 418

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768433|emb|CAN69261.1| hypothetical protein VITISV_004029 [Vitis vinifera]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 267/439 (60%), Positives = 323/439 (73%), Gaps = 28/439 (6%)

Query: 1   MSSTSVREFVLKEVPDWNDEVIATARFKAFSGQRSDWEPKFQFWKNLILKIARHFSLAII 60
           M S +VREFV +EV DW +E I+TARFKAFSGQRSDWE ++QFW++LILK+ARHF L  I
Sbjct: 1   MESEAVREFVRREVKDWEEEAISTARFKAFSGQRSDWEARYQFWRDLILKVARHFHLLFI 60

Query: 61  HPSQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMAR 120
            PSQ                    F+MYNEGD++RSVDLVD  SGRL+QLFRKV+ +M R
Sbjct: 61  SPSQ--------------------FLMYNEGDIIRSVDLVDPTSGRLSQLFRKVKHMMVR 100

Query: 121 SAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVL 180
              + E++ +DH+IL+ +LKDK  EV+K+LSES WTSSC+ITMKKFQD CGG  EASAVL
Sbjct: 101 -PTSAEVMFEDHLILLPLLKDKTVEVVKVLSESQWTSSCVITMKKFQDICGGTREASAVL 159

Query: 181 SFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIID 240
           S+L+G GKA YLSISK E  EGVKVSLS AAVS  +SLD D+LHL WT E LQ QLD+ID
Sbjct: 160 SYLSGCGKAQYLSISKKELIEGVKVSLSTAAVSGTTSLDLDILHLTWTTENLQQQLDVID 219

Query: 241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
           +  E+S+K+ALASL+SGNK VALRHAK LKL  ESREKC S LNRVEEVLSLI NAESTK
Sbjct: 220 QRCEVSKKAALASLNSGNKKVALRHAKALKLASESREKCISFLNRVEEVLSLIANAESTK 279

Query: 301 KVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIV---PSYTGIDDEDIE 357
           KVSEAIQIGAQAIK+N+I VEE+Q CL+EL +SID QKQ ++ +    PSY  I+DEDIE
Sbjct: 280 KVSEAIQIGAQAIKENRIDVEEVQRCLQELGDSIDSQKQVQEALAESDPSYADIEDEDIE 339

Query: 358 EEFKKLEQEVECERPKPTVSKTGVNEPA----ASESAESLRVAFSTIGLNDGQATALAIS 413
           EEF+KLE E+  + P+  VS+ GV+  A    ASES++SL  A S + L D  A    I 
Sbjct: 340 EEFRKLELELGNQNPQILVSQAGVDTAAGETEASESSKSLCDALSDLKLADNAARGSTIL 399

Query: 414 DTVVPDRSNESKHPMLESA 432
           D+    R N SK+   E+A
Sbjct: 400 DSTGSKRDNISKNLKPEAA 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467433|ref|XP_004151427.1| PREDICTED: charged multivesicular body protein 7-like [Cucumis sativus]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/408 (55%), Positives = 304/408 (74%), Gaps = 8/408 (1%)

Query: 3   STSVREFVLKEVPDWNDEVIATARFKAFSGQRSDWEPKFQFWKNLILKIARHFSLAIIHP 62
            + VREF+ ++VPDW+DEV+ATARFKAFSGQ+SDWEP++ FW++LIL +AR F+  II P
Sbjct: 7   GSCVREFIREKVPDWDDEVVATARFKAFSGQKSDWEPRYLFWRDLILTVARQFNFLIIKP 66

Query: 63  SQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMARSA 122
           S++KN+WF RGGLTPLC D VL +MY  GD++R  D++D  SG+L+ +F+K+ +LM  S 
Sbjct: 67  SEIKNQWFYRGGLTPLCLDHVLHLMYTGGDIIRRSDMLDPRSGQLSYMFKKLSNLMGTSK 126

Query: 123 ATPEILLKD-HVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLS 181
             P+ LL+D +++L  VL+D+A EVIK LS S WTSSCIITM KFQ+ CGG DEA+ +LS
Sbjct: 127 KNPDSLLRDDYIVLACVLQDRAAEVIKCLSLSSWTSSCIITMVKFQNICGGPDEATVILS 186

Query: 182 FLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDR 241
           +L   GKA +LS  K E  EGVKVSLS   V  I+SLDYD+LHL+WT EKLQ QLD+ID+
Sbjct: 187 YLIECGKAKFLSKEKKELLEGVKVSLSATTVPGITSLDYDILHLVWTAEKLQQQLDVIDQ 246

Query: 242 HYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKK 301
            Y++S++SAL SL SGN+  AL+HA++LK+T ESREK  SL NRVEEVL+ I +AE TK 
Sbjct: 247 RYDVSKQSALVSLKSGNRKTALKHARELKITTESREKVASLFNRVEEVLNAIADAELTKT 306

Query: 302 VSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVI--VPSYTGIDDEDIEEE 359
           VSEAIQIGA+ +K+++++ ++LQ  L+ELE S+D+QKQ    I  VPS +  DDEDIEEE
Sbjct: 307 VSEAIQIGARVMKEHEVNWDQLQDSLQELEASVDIQKQVANAIDSVPSSSIPDDEDIEEE 366

Query: 360 FKKLEQEVECERP-KPTVSKTGVN----EPAASESAESLRVAFSTIGL 402
           FKKLE E+   +    + S++GVN    E  A+   +SL  A S + L
Sbjct: 367 FKKLELELTAGQILDASTSESGVNIATGETVAAVCDDSLSTALSNLKL 414

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522224|ref|XP_004168127.1| PREDICTED: LOW QUALITY PROTEIN: charged multivesicular body protein 7-like [Cucumis sativus]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/407 (56%), Positives = 303/407 (74%), Gaps = 8/407 (1%)

Query: 4   TSVREFVLKEVPDWNDEVIATARFKAFSGQRSDWEPKFQFWKNLILKIARHFSLAIIHPS 63
           + VREF+ ++VPDW+DEV+ATARFKAFSGQ+SDWEP++ FW++LIL +AR F+  II PS
Sbjct: 8   SCVREFIREKVPDWDDEVVATARFKAFSGQKSDWEPRYLFWRDLILTVARQFNFLIIKPS 67

Query: 64  QVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMARSAA 123
           ++KN+WF RGGLTPLC D VL +MY  GD++R  D++D  SG+L+ +F K+ +LM  S  
Sbjct: 68  EIKNQWFYRGGLTPLCLDHVLHLMYTGGDIIRRSDMLDPRSGQLSYMFXKLSNLMGTSKK 127

Query: 124 TPEILLKD-HVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSF 182
            P+ LL+D +++L  VL+D+A EVIK LS S WTSSCIITM KFQ+ CGG DEA+ +LS+
Sbjct: 128 NPDSLLRDDYIVLACVLQDRAAEVIKCLSLSSWTSSCIITMVKFQNICGGPDEATVILSY 187

Query: 183 LTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRH 242
           L   GKA +LS  K E  EGVKVSLS   V  I+SLDYD+LHL+WT EKLQ QLD+ID+ 
Sbjct: 188 LIECGKAKFLSKEKKELLEGVKVSLSATTVPGITSLDYDILHLVWTAEKLQQQLDVIDQR 247

Query: 243 YEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKV 302
           Y++S++SAL SL SGN+  AL+HA++LK+T ESREK  SL NRVEEVL+ I +AE TK V
Sbjct: 248 YDVSKQSALVSLKSGNRKTALKHARELKITTESREKVASLFNRVEEVLNAIADAELTKTV 307

Query: 303 SEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVI--VPSYTGIDDEDIEEEF 360
           SEAIQIGA+ +K+++++ ++LQ  L+ELE S+D+QKQ    I  VPS +  DDEDIEEEF
Sbjct: 308 SEAIQIGARVMKEHEVNWDQLQDSLQELEASVDIQKQVANAIDSVPSSSIPDDEDIEEEF 367

Query: 361 KKLEQEVECERP-KPTVSKTGVN----EPAASESAESLRVAFSTIGL 402
           KKLE E+   +    + S++GVN    E  A+   +SL  A S + L
Sbjct: 368 KKLELELTAGQILDASTSESGVNIATGETVAAVCDDSLSTALSNLKL 414

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817552|ref|XP_002876659.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata] gi|297322497|gb|EFH52918.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/433 (53%), Positives = 314/433 (72%), Gaps = 11/433 (2%)

Query: 1   MSSTSVREFVLKEVPDWNDEVIATARFKAFSGQRSDWEPKFQFWKNLILKIARHFSLAII 60
           M S +V+EF+ +EVPDW+DEV+ TARFKAFSGQRSDWE KFQFW++LILK++R F L II
Sbjct: 1   MDSEAVKEFIRREVPDWDDEVVTTARFKAFSGQRSDWELKFQFWRDLILKVSRQFGLFII 60

Query: 61  HPSQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMAR 120
            P +VK  WFNRGG+TPLC D VL +M++EGDVVR  D+ D  SGR+++L R VR+LM R
Sbjct: 61  DPVKVKKAWFNRGGITPLCIDHVLLLMHSEGDVVRISDIDDPGSGRISRLLRTVRNLMVR 120

Query: 121 SAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVL 180
            +  PE +L+  ++ + +LK+KA +V+ +LSE HWTS+C++T+KKF++ C G +EASAVL
Sbjct: 121 QSVKPEEILETKLVFVPLLKEKAADVVNILSEGHWTSTCVVTLKKFRNLCNGSNEASAVL 180

Query: 181 SFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIID 240
           S L+G GKA  +SI++ E  EGVKVS S AA+ SIS+LD D+LHL+ T EKLQ QL+++D
Sbjct: 181 SHLSGCGKAHKISINRGELIEGVKVSFSQAALPSISTLDCDILHLLRTTEKLQDQLEVMD 240

Query: 241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
           +  E S+KSALASL SG++ VALRHA++LKL  ESREKCTSLLNRVEEVL+ I ++ESTK
Sbjct: 241 QRCEKSKKSALASLKSGHRKVALRHARELKLATESREKCTSLLNRVEEVLNTIADSESTK 300

Query: 301 KVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIVPS-YTGIDDEDIEEE 359
            VSEAI+ GA+ +K  KIS +++   LEELEE+I+ QKQ EK +  + Y   DDE+IEEE
Sbjct: 301 MVSEAIKTGARVMKDVKISADDVHDYLEELEETIESQKQVEKALESAPYPDTDDENIEEE 360

Query: 360 FKKLEQEVECERPKPTVSKTGVNEPAASESAESLRVAFSTIGLNDGQATALAISDTVVPD 419
             +LE ++E E  +          PA S++A+SL   FS + L  G+           P 
Sbjct: 361 LLELEMDLESESSQVL--------PATSDTADSLTEMFSELKL--GKTKQTLEEQATEPA 410

Query: 420 RSNESKHPMLESA 432
           R  +S   +LE+A
Sbjct: 411 RMKDSGKKILEAA 423

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
TAIR|locus:2097998	462	AT3G62080 "AT3G62080" [Arabido	0.976	0.913	0.473	9.4e-98
ZFIN|ZDB-GENE-040426-1750	457	chmp7 "CHMP family, member 7"	0.689	0.652	0.220	1.3e-14
UNIPROTKB|A6H704	450	CHMP7 "Uncharacterized protein	0.689	0.662	0.235	1.7e-13
UNIPROTKB|Q8WUX9	453	CHMP7 "Charged multivesicular	0.689	0.657	0.232	6.5e-13
UNIPROTKB|Q5R812	453	CHMP7 "Charged multivesicular	0.689	0.657	0.232	6.5e-13
RGD|1308779	450	Chmp7 "charged multivesicular	0.689	0.662	0.232	8.4e-13
MGI|MGI:1913922	451	Chmp7 "charged multivesicular	0.689	0.660	0.232	8.4e-13
UNIPROTKB|Q5ZJB7	448	CHMP7 "Charged multivesicular	0.687	0.662	0.240	3.1e-12
UNIPROTKB|Q7T0X5	422	chmp7 "Charged multivesicular	0.689	0.706	0.242	4.5e-12
UNIPROTKB|Q5FW14	468	chmp7 "Charged multivesicular	0.687	0.634	0.246	5.7e-12

TAIR|locus:2097998 AT3G62080 "AT3G62080" [Arabidopsis thaliana (taxid:3702)]

 Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
 Identities = 205/433 (47%), Positives = 282/433 (65%)

Query:     1 MSSTSVREFVLKEVPDWNDEVIATARFKAFSGQRSDWEPKFQFWKNLILKIARHFSLAII 60
             M   +V+EF+ +EVPDW+DEV+A ARFKAFSGQRSDWE KFQFW++LI+K++R F L II
Sbjct:    40 MDPEAVKEFIRREVPDWDDEVVAMARFKAFSGQRSDWELKFQFWRDLIIKVSRQFGLFII 99

Query:    61 HPSQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMAR 120
              P QVK  WF+RGG+TPLC DDV+ +M++EGDVVR  DL D  SGR+ +L R V++LM +
Sbjct:   100 DPVQVKKAWFDRGGMTPLCIDDVVLLMHSEGDVVRISDLDDPGSGRIARLLRTVKNLMVQ 159

Query:   121 SAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVL 180
                  E +L++ ++L+ +LK+KA +V+K+LSE HWTS+C++T+KKF++ C G +EASAVL
Sbjct:   160 QPVKQEEILENTLVLVPLLKEKAADVVKILSEGHWTSTCVVTLKKFRNLCNGSNEASAVL 219

Query:   181 SFLTGRGKALYLSISKNEFTEGVKXXXXXXXXXXXXXXDYDVLHLIWTVEKLQLQLDIID 240
             S L+G GKA  +SI++ E  EGVK              D D+LHL+ T EKLQ QL+++D
Sbjct:   220 SHLSGCGKAHKISINRGELIEGVKVSFSQTALPGISTLDCDILHLLRTTEKLQDQLEVMD 279

Query:   241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
             +  E S+KSALASL SG++ VALRHA++LK+  ESREKCTSLLNRVEEVL+ I ++ESTK
Sbjct:   280 QRCEKSKKSALASLKSGHRKVALRHARELKVVTESREKCTSLLNRVEEVLNTIADSESTK 339

Query:   301 KVSEAIQIGAQAIKKNKISVXXXXXXXXXXXXSIDLQKQAEKVIVPS-YTGIXXXXXXXX 359
              VSEAI+ GA+ +K  KIS             +I+ QKQ EK +  + Y  I        
Sbjct:   340 MVSEAIKTGARVMKDIKISADDVHDYLEELEETIESQKQVEKALESAPYPDIDDEDIEEE 399

Query:   360 XXXXXXXXXXXRPKPTVSKTGVNEPAASESAESLRVAFSTIGLNDGQATALAISDTVVPD 419
                              S++    PA S++A+SL   FS + L  G+           P 
Sbjct:   400 LLELEMDLE--------SESSQVLPATSDTADSLTEMFSELKL--GKTKQTLEEQATEPA 449

Query:   420 RSNESKHPMLESA 432
             +  +S   +LE+A
Sbjct:   450 QMKDSGKKILEAA 462

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

ZFIN|ZDB-GENE-040426-1750 chmp7 "CHMP family, member 7" [Danio rerio (taxid:7955)]

 Score = 212 (79.7 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 69/313 (22%), Positives = 146/313 (46%)

Query:    15 PDWNDEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEWF 70
             PDW+D+   +  F AF   R    +DW+ K  FW  LI++  R      ++   + NE F
Sbjct:    14 PDWDDDERMSFLFSAFKENRDVDCTDWDGKIDFWSPLIIEHCRRCGSVCVNLQDL-NENF 72

Query:    71 NRGGLTPLCFDDVLFVMYNEGDVVRSVDLV-DAASGRLTQ-----LFRKVRSLMARSAAT 124
              R G  PL    V+  M   G V +  D   +  SG L+      L R ++  ++    +
Sbjct:    73 RRKGSVPLGLSTVIQSMIRSGKVQKESDFAANVDSGWLSWGVGLLLVRPLKWTLSALLGS 132

Query:   125 PEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGG--QDEASAVLSF 182
               + L++  +++E++K+KA E++     S  ++  +++ ++ +        DE++  ++ 
Sbjct:   133 GRVPLEESFVVIELVKEKAAELLAAYRGSALSARSLLSFQELRSLSSHICPDESTLCMAL 192

Query:   183 LTGRGKALYLSISKNEFTEGVKXXXXXXXXXX-XXXXDYDVLHLIWTVEKLQLQLDIIDR 241
             L  + +  ++++S +E  + VK               D  +  L  + + L+ +++ +  
Sbjct:   193 LQLQ-REKHVTVSLHEGEKLVKFSQAGQGRVSPVSEVDLGIYQLQCSEKLLEERVEALGH 251

Query:   242 HYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKK 301
               E  ++ A + L  G K+ ALR  +  K  ++  ++  + L  V+ +L  I N+++ + 
Sbjct:   252 EAEKCKQQAKSLLKEGKKSQALRCLRGSKRVEKKADRLFAQLETVKGILDRIANSQTDRL 311

Query:   302 VSEAIQIGAQAIK 314
             V +A Q G  A++
Sbjct:   312 VMQAYQAGVAALR 324

GO:0015031 "protein transport" evidence=IEA

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0045324 "late endosome to vacuole transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|A6H704 CHMP7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 202 (76.2 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 74/314 (23%), Positives = 142/314 (45%)

Query:    15 PDWN-DEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEW 69
             P+W  DE   +  F AF   R    +DW+ K  FW  L+L  +R   +  +    ++ E 
Sbjct:    22 PEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLVLSHSRRQGVVRLRLRDLQ-EA 80

Query:    70 FNRGGLTPLCFDDVLFVMYNEGDVVRSVDL---VDAAS---GRLTQLFRKVRSLMARSAA 123
             F R G  PL    VL  +   G++ R  D    VD++    G    L + ++  ++    
Sbjct:    81 FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG 140

Query:   124 TPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLS 181
               ++  ++ ++ +E+LK+KA+EV +L   S  +S  ++ + +    C G   DE +  L 
Sbjct:   141 DHKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCAGSCPDERTFYLV 200

Query:   182 FLTGRGKALYLSISKNEFTEGVKXXXXXXXXXX-XXXXDYDVLHLIWTVEKLQLQLDIID 240
              L  + K   +++ +    + VK               D  V  L+ + + L  +++ + 
Sbjct:   201 LLQLQ-KEKRVTVLEQNGEKIVKFARGPHAKVSPVNDVDVGVYQLMQSEQLLSRKVESLS 259

Query:   241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
             +  E  ++ A  +  +G K +ALR  K  + T++  E   + L+ V+ +L  I  +++ +
Sbjct:   260 QEAERYKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQ 319

Query:   301 KVSEAIQIGAQAIK 314
              V  A Q G  A+K
Sbjct:   320 MVFNAYQAGVGALK 333

GO:0045324 "late endosome to vacuole transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000815 "ESCRT III complex" evidence=IEA

UNIPROTKB|Q8WUX9 CHMP7 "Charged multivesicular body protein 7" [Homo sapiens (taxid:9606)]

 Score = 197 (74.4 bits), Expect = 6.5e-13, P = 6.5e-13
 Identities = 73/314 (23%), Positives = 141/314 (44%)

Query:    15 PDWN-DEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEW 69
             P+W  DE   +  F AF   R    +DW+ K  FW  L+L  +R   +  +    ++ E 
Sbjct:    22 PEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLVLSHSRRQGVVRLRLRDLQ-EA 80

Query:    70 FNRGGLTPLCFDDVLFVMYNEGDVVRSVDL---VDAAS---GRLTQLFRKVRSLMARSAA 123
             F R G  PL    VL  +   G++ R  D    VD++    G    L + ++  ++    
Sbjct:    81 FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG 140

Query:   124 TPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLS 181
               ++  ++ ++ +E+LK+KA+EV +L   S  +S  ++ + +    C     DE +  L 
Sbjct:   141 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV 200

Query:   182 FLTGRGKALYLSISKNEFTEGVKXXXXXXXXXX-XXXXDYDVLHLIWTVEKLQLQLDIID 240
              L  + K   +++ +    + VK               D  V  L+ + + L  +++ + 
Sbjct:   201 LLQLQ-KEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLS 259

Query:   241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
             +  E  ++ A  +  +G K +ALR  K  + T++  E   + L+ V+ +L  I  +++ +
Sbjct:   260 QEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQ 319

Query:   301 KVSEAIQIGAQAIK 314
              V  A Q G  A+K
Sbjct:   320 MVFNAYQAGVGALK 333

GO:0000815 "ESCRT III complex" evidence=IDA

GO:0045324 "late endosome to vacuole transport" evidence=IMP

GO:0008565 "protein transporter activity" evidence=IMP

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q5R812 CHMP7 "Charged multivesicular body protein 7" [Pongo abelii (taxid:9601)]

 Score = 197 (74.4 bits), Expect = 6.5e-13, P = 6.5e-13
 Identities = 73/314 (23%), Positives = 141/314 (44%)

Query:    15 PDWN-DEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEW 69
             P+W  DE   +  F AF   R    +DW+ K  FW  L+L  +R   +  +    ++ E 
Sbjct:    22 PEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLVLSHSRRQGVVRLRLRDLQ-EA 80

Query:    70 FNRGGLTPLCFDDVLFVMYNEGDVVRSVDL---VDAAS---GRLTQLFRKVRSLMARSAA 123
             F R G  PL    VL  +   G++ R  D    VD++    G    L + ++  ++    
Sbjct:    81 FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG 140

Query:   124 TPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLS 181
               ++  ++ ++ +E+LK+KA+EV +L   S  +S  ++ + +    C     DE +  L 
Sbjct:   141 DNKVPAEEVLVAVELLKEKAEEVYRLYQSSPLSSHPVVALSELSTLCANSCPDERTFYLV 200

Query:   182 FLTGRGKALYLSISKNEFTEGVKXXXXXXXXXX-XXXXDYDVLHLIWTVEKLQLQLDIID 240
              L  + K   +++ +    + VK               D  V  L+ + + L  +++ + 
Sbjct:   201 LLQLQ-KEKRVTVLEQNGEKIVKFARGPHAKVSPVNDVDVGVYQLMQSEQLLSRKVESLS 259

Query:   241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
             +  E  ++ A  +  +G K +ALR  K  + T++  E   + L+ V+ +L  I  +++ +
Sbjct:   260 QEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQ 319

Query:   301 KVSEAIQIGAQAIK 314
              V  A Q G  A+K
Sbjct:   320 MVFNAYQAGVGALK 333

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0045324 "late endosome to vacuole transport" evidence=ISS

RGD|1308779 Chmp7 "charged multivesicular body protein 7" [Rattus norvegicus (taxid:10116)]

 Score = 196 (74.1 bits), Expect = 8.4e-13, P = 8.4e-13
 Identities = 73/314 (23%), Positives = 141/314 (44%)

Query:    15 PDWN-DEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEW 69
             P+W  DE   +  F AF   R    +DW+ K  FW  L+L  +R   +  +    ++ E 
Sbjct:    22 PEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLVLSHSRRQGVVRLRLRDLQ-EA 80

Query:    70 FNRGGLTPLCFDDVLFVMYNEGDVVRSVDL---VDAAS---GRLTQLFRKVRSLMARSAA 123
             F R G  PL    VL  +   G++ R  D    VD++    G    L + ++  ++    
Sbjct:    81 FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG 140

Query:   124 TPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLS 181
               ++  ++ ++ +E+LK+KA+EV +L   S  +S  ++ + +    C     DE +  L 
Sbjct:   141 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSALCANSCPDERTFYLV 200

Query:   182 FLTGRGKALYLSISKNEFTEGVKXXXXXXXXXX-XXXXDYDVLHLIWTVEKLQLQLDIID 240
              L  + K   +++ +    + VK               D  V  L+ + + L  +++ + 
Sbjct:   201 LLQLQ-KEKRVTVLEQNGEKIVKFARGPHAKVSPVNDVDVGVYQLMQSEQLLSQKVESLS 259

Query:   241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
             +  E  ++ A  +  +G K +ALR  K  + T++  E   + L+ V+ +L  I  +++ +
Sbjct:   260 QESERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQ 319

Query:   301 KVSEAIQIGAQAIK 314
              V  A Q G  A+K
Sbjct:   320 MVFNAYQAGVGALK 333

GO:0000815 "ESCRT III complex" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0008565 "protein transporter activity" evidence=IEA;ISO

GO:0045324 "late endosome to vacuole transport" evidence=IEA;ISO

MGI|MGI:1913922 Chmp7 "charged multivesicular body protein 7" [Mus musculus (taxid:10090)]

 Score = 196 (74.1 bits), Expect = 8.4e-13, P = 8.4e-13
 Identities = 73/314 (23%), Positives = 141/314 (44%)

Query:    15 PDWN-DEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEW 69
             P+W  DE   +  F AF   R    +DW+ K  FW  L+L  +R   +  +    ++ E 
Sbjct:    22 PEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLVLSHSRRQGVVRLRLRDLQ-EA 80

Query:    70 FNRGGLTPLCFDDVLFVMYNEGDVVRSVDL---VDAAS---GRLTQLFRKVRSLMARSAA 123
             F R G  PL    VL  +   G++ R  D    VD++    G    L + ++  ++    
Sbjct:    81 FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG 140

Query:   124 TPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLS 181
               ++  ++ ++ +E+LK+KA+EV +L   S  +S  ++ + +    C     DE +  L 
Sbjct:   141 DHKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSALCANSCPDERTFYLV 200

Query:   182 FLTGRGKALYLSISKNEFTEGVKXXXXXXXXXX-XXXXDYDVLHLIWTVEKLQLQLDIID 240
              L  + K   +++ +    + VK               D  V  L+ + + L  +++ + 
Sbjct:   201 LLQLQ-KEKRVTVLEQNGEKIVKFARGPHAKVSPVNDVDVGVYQLMQSEQLLSRKVESLS 259

Query:   241 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 300
             +  E  ++ A  +  +G K +ALR  K  + T++  E   + L+ V+ +L  I  +++ +
Sbjct:   260 QESERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQ 319

Query:   301 KVSEAIQIGAQAIK 314
              V  A Q G  A+K
Sbjct:   320 MVFNAYQAGVGALK 333

GO:0000815 "ESCRT III complex" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0045324 "late endosome to vacuole transport" evidence=ISO

UNIPROTKB|Q5ZJB7 CHMP7 "Charged multivesicular body protein 7" [Gallus gallus (taxid:9031)]

 Score = 191 (72.3 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 76/316 (24%), Positives = 143/316 (45%)

Query:    15 PDW--NDEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNE 68
             P+W  +DE +A   F AF   R    ++W+ K  FW  L+L   R   +      +++N 
Sbjct:    19 PEWETDDERMAFL-FSAFKQSREVNSTEWDSKMAFWVGLVLARGRRRGVVRTCLRELQNG 77

Query:    69 WFNRGGLTPLCFDDVLFV------MYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMARSA 122
              F R G  PL    VL        M  E D + SVD    + G    + + ++  ++   
Sbjct:    78 -FERRGSVPLGLGTVLRELLRRGKMQRESDFMASVDSSWISWGVGVFILKPLKWTLSSVL 136

Query:   123 ATPEILLKDHVIL-MEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGG--QDEASAV 179
                ++  ++ V++ +E+L++KA+EV +L   S  +S  ++ + + +  C G   DE +  
Sbjct:   137 GDSKVPEEEEVLIYVELLQEKAEEVYRLYQNSVLSSHPVVALSELRSLCAGVCPDERTFY 196

Query:   180 LSFLTGRGKALYLSISKNEFTEGVKXXXXXXXXXX-XXXXDYDVLHLIWTVEKLQLQLDI 238
             L  L  + K   ++I +    + VK               D  V  L+ + + L  +++ 
Sbjct:   197 LLLLQLQ-KEKKVTILEQNGEKIVKFARGLHAKVSPMNDVDIGVYQLMQSEQLLSQKVES 255

Query:   239 IDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAES 298
             + +  E  +  A ++  +G K +ALR  K  + T+   E+  S L+ V+ +L  I  +++
Sbjct:   256 LSQEAEKCKDDARSACRAGKKQLALRCLKSKRRTERRIEELHSKLDAVQGILDRIYASQT 315

Query:   299 TKKVSEAIQIGAQAIK 314
              + V  A Q G  A+K
Sbjct:   316 DQMVFNAYQAGVGALK 331

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0045324 "late endosome to vacuole transport" evidence=ISS

UNIPROTKB|Q7T0X5 chmp7 "Charged multivesicular body protein 7" [Xenopus laevis (taxid:8355)]

 Score = 189 (71.6 bits), Expect = 4.5e-12, P = 4.5e-12
 Identities = 76/314 (24%), Positives = 134/314 (42%)

Query:    15 PDWNDEVIATARFKAFSGQRS----DWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEWF 70
             P+W D+   +  F AF   R     DW+ K +FW  LIL  AR   L  I  SQ++N+ F
Sbjct:     9 PEWEDDERMSFLFSAFKRTRDVNTCDWDGKMKFWIPLILTHARAQGLLSITLSQLEND-F 67

Query:    71 NRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDA-ASGRLTQLFRK--VRSLM--ARSAATP 125
              R G  P+    V+  M  +G + +  D V   +SG L+   R+  +R L     +    
Sbjct:    68 RRKGCAPMGLRTVIQEMIRQGTLRKETDFVSGVSSGWLSWGMRQLVIRPLRWTIGTMLGS 127

Query:   126 EILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCG----GQDEASAVLS 181
             ++   + +++ EV+K++A  V++    S + S  ++  ++    C          + VL 
Sbjct:   128 QVGPDEPLVIPEVIKERAALVLQRYQSSTFRSFPLLCEEEVHTLCAEICPNPSALNLVLL 187

Query:   182 FLTGRGKALYLSISKNEFTEGVKXXXXXXXXXXXXXXDYDVLHLIWTVEKLQLQLDIIDR 241
              L G  K   L  +  +  + V+              D  +  L    + L  +L     
Sbjct:   188 QLQGDKKICVLERAGQKLVKFVRVSVGQVEPISES--DLGIYQLQQGEKLLSERLQSAGE 245

Query:   242 HYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKK 301
                   + A     +GNK  ALR  ++ KL +    +  +  + ++ +L  I  AE+ +K
Sbjct:   246 ESNRLTEEARTYNRAGNKNQALRCLRKRKLVERRITELQNKQDNIQGILERISAAETDRK 305

Query:   302 VSEAIQIGAQAIKK 315
             V  A Q+G  A+K+
Sbjct:   306 VVSAYQMGVSALKQ 319

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0045324 "late endosome to vacuole transport" evidence=ISS

UNIPROTKB|Q5FW14 chmp7 "Charged multivesicular body protein 7" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 189 (71.6 bits), Expect = 5.7e-12, P = 5.7e-12
 Identities = 77/313 (24%), Positives = 139/313 (44%)

Query:    15 PDWNDEVIATARFKAFSGQR----SDWEPKFQFWKNLILKIARHFSLAIIHPSQVKNEWF 70
             P+W+D+   +  F AF   R    SDW+ K +FW  LILK AR   L  I  SQ++ + F
Sbjct:     9 PEWDDDERMSFLFSAFKQTRDVNTSDWDGKMKFWIPLILKHARAQGLLSISLSQLERD-F 67

Query:    71 NRGGLTPLCFDDVLFVMYNEGDVVRSVDLV-DAASGRLTQLFRK--VRSLM--ARSAATP 125
              R G  PL    V+  M  +G + +  D V + +SG L+   R+  +R L     +    
Sbjct:    68 RRKGFAPLGLRIVIQEMMRQGTLRKESDYVSNVSSGWLSWGMRQLVIRPLRWTIGTVLGS 127

Query:   126 EILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCG----GQDEASAVLS 181
             ++   + +++ E++K++A  V++    S   +  +++ ++ +  C          + VL 
Sbjct:   128 QMGPDEPLVIPEIIKERAALVLQRYQSSPLRALPLLSEEEVRTLCAEICPNPSALNLVLL 187

Query:   182 FLTGRGKALYLSISKNEFTEGVKXXXXXXXXXXXXXXDYDVLHLIWTVEKLQLQLDIIDR 241
              L G  K   L  +  +  + V+              D  +  L  + + L  +L     
Sbjct:   188 QLQGDKKICVLERAGKKLVKFVRVSVGQVDPISES--DLGIYELQQSEKLLSERLQSAGE 245

Query:   242 HYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKK 301
               +   + A     +GNK  ALR  ++ KL +    +  +  + V+ +L  I  AE+ +K
Sbjct:   246 ESDRLTEEARTYNRAGNKHQALRCLRKRKLLERRITELQNKQDTVQGILERIAAAETDRK 305

Query:   302 VSEAIQIGAQAIK 314
             V  A Q+G  A+K
Sbjct:   306 VVSAYQMGVSALK 318

GO:0000815 "ESCRT III complex" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0045324 "late endosome to vacuole transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00021941 hypothetical protein (436 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	432
pfam03357	169	pfam03357, Snf7, Snf7	2e-12

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 28/116 (24%), Positives = 62/116 (53%), Gaps = 5/116 (4%)

Query: 256 SGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK 315
            GNK  AL   KQ K  ++  ++    L  +E+V   IENA++ ++V  A++ GA+A+K 
Sbjct: 37  KGNKDAALILLKQKKRYEKQLDQLDGQLANLEQVRMAIENAKTNQEVLNAMKGGAKAMKA 96

Query: 316 --NKISVEELQLCLEELEESIDLQKQAEKVI---VPSYTGIDDEDIEEEFKKLEQE 366
               + ++++   ++E+E+ ++   +  +++   +      D+E+++ E   L  E
Sbjct: 97  MNKNMDIDKIDDLMDEIEDQMEKADEISEMLSDTLDDADEEDEEELDAELDALLDE 152

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	432
KOG2911	439	consensus Uncharacterized conserved protein [Funct	100.0
KOG2910	209	consensus Uncharacterized conserved protein predic	100.0
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	99.98
KOG1656	221	consensus Protein involved in glucose derepression	99.96
PTZ00464	211	SNF-7-like protein; Provisional	99.95
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	99.91
KOG1655	218	consensus Protein involved in vacuolar protein sor	99.8
KOG4068	174	consensus Uncharacterized conserved protein [Funct	98.63
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	98.34
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	98.31
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	98.29
PF05871	139	ESCRT-II: ESCRT-II complex subunit; InterPro: IPR0	97.99
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	97.98
PRK10698	222	phage shock protein PspA; Provisional	97.87
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	97.67
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	97.52
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	97.5
PTZ00464	211	SNF-7-like protein; Provisional	97.06
KOG1655	218	consensus Protein involved in vacuolar protein sor	95.95
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	94.57
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	91.58
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	91.12
COG5491	204	VPS24 Conserved protein implicated in secretion [C	90.8
smart00685	59	DM14 Repeats in fly CG4713, worm Y37H9A.3 and huma	88.24
KOG2911	439	consensus Uncharacterized conserved protein [Funct	86.91

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=7.2e-68  Score=523.24  Aligned_cols=402  Identities=26%  Similarity=0.390  Sum_probs=334.1

Q ss_pred             CCchhHHHHhhhcCCCCCchhhhhhhc-cCCCCCCCCcHHHHHHHHHHHHHHHHHCCceEEC-ccccchhhhhcCCCCCC
Q 013999            1 MSSTSVREFVLKEVPDWNDEVIATARF-KAFSGQRSDWEPKFQFWKNLILKIARHFSLAIIH-PSQVKNEWFNRGGLTPL   78 (432)
Q Consensus         1 ~~~~~~~~~i~~~~~~w~d~~Rl~sLy-sdF~~n~~gy~ani~fW~~lI~~~~~~~~~~~~~-~~~l~~~~f~r~~~~P~   78 (432)
                      |+--..-+|+...||+|.|..||.++| +-|..||+||+|||.||+++|.+||+..|.++|+ ..+|+. +|.|+||+|+
T Consensus         1 ~~~~~~~~~~~~~~pew~d~~~~~~~f~~~r~~n~~gydak~~fWrdlI~~~s~~~g~~if~~lr~lq~-~F~r~~~vPl   79 (439)
T KOG2911|consen    1 MGKKAKVNAAEFLVPEWDDLTVLKALFSKLRHLNPEGYDAKMNFWRDLILKYSRKSGRRIFLVLRTLQE-LFSRGGGVPL   79 (439)
T ss_pred             CCccccccccccCCCcchhHHHHHHHhhHhhhcChHhHHhHhhHHHHHHHHHhhhcCCeEeeHHHHHHH-HhccCCCcCc
Confidence            333445678999999997778999999 6677799999999999999999999999999999 666755 8999999999


Q ss_pred             CHHHHHHHHHHCCCeeehhhhhc-ccCCchhHHHH----hhhhhccccC-CCcccccCccEeehHHHHHHHHHHH-HHHh
Q 013999           79 CFDDVLFVMYNEGDVVRSVDLVD-AASGRLTQLFR----KVRSLMARSA-ATPEILLKDHVILMEVLKDKADEVI-KLLS  151 (432)
Q Consensus        79 ~L~~Vi~emv~~g~li~~~ef~~-~~~gw~swl~~----~~~~~~~~~~-~~~~~l~~~~~V~~~~l~~~a~~i~-~~~~  151 (432)
                      |||+||+.|+++|.++|.++|.+ +.+||++|+.|    +...|.+++- ..+........+.++.|.+.+..++ ..++
T Consensus        80 sLd~Vi~~l~~~G~vir~sdf~~~~~sswigw~~~~~~~k~l~w~~~~~~~~~~~~l~e~l~~i~~l~eka~~~~~~ll~  159 (439)
T KOG2911|consen   80 SLDTVIDYLIQEGDVIRISDFLDDPDSSWIGWLVGVSIFKPLRWSFSKLKNSASSILEERLPLIKLLKEKALDVYAELLH  159 (439)
T ss_pred             cHHHHHHHHHhccCeeeHHHhhcCCCcccchhccceeeechhhhhhhhhccchhHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999995 88999998644    3333333311 1222334667788888888888888 7789


Q ss_pred             hccccC--ccccchhhHHhhhCC-----cchHHHHHHHHhccCccceeeeecCCceeEEEeeC-CCCcCCCCCchhHHHH
Q 013999          152 ESHWTS--SCIITMKKFQDKCGG-----QDEASAVLSFLTGRGKALYLSISKNEFTEGVKVSL-SPAAVSSISSLDYDVL  223 (432)
Q Consensus       152 ~~~~~s--d~v~s~~ef~~~~~~-----~~d~~vlL~yL~~~~~~k~v~~~~~~~~~~IKf~~-~~~~~~~Ite~D~~I~  223 (432)
                      ++++.+  ++|||+.+|++.|+.     ..+++++|+||.   ..+++++...++++.|||+. +...+.+||+.|.+|+
T Consensus       160 ~~~~~~~t~~Vvt~nef~tlc~~~~~~~~~t~~l~l~~l~---~~k~i~vg~~~g~k~~~f~~i~~~~~~~it~~D~~V~  236 (439)
T KOG2911|consen  160 EEVLSECTGAVVTLNEFQTLCSNLGKPDEETKDLVLCWLA---YQKHIIVGESIGIKFLKFSQIPSQDASIITEIDGSVA  236 (439)
T ss_pred             hhhhhccCceeeeHHHHHHHhccCCCCcHHHHHHHHHHHH---hhhheeeehhcceEEEeeccCCcccccCCccchhhHH
Confidence            888876  899999999999987     357899999997   44578888778888888874 3445778999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013999          224 HLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVS  303 (432)
Q Consensus       224 ~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~Ie~a~~n~~v~  303 (432)
                      +|++++.+|.+|++.|+++|+.++.++|++++.|+|+.|++|||+||++||.++++..+++||++++++|++|++|+.|+
T Consensus       237 ~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl  316 (439)
T KOG2911|consen  237 DLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVL  316 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCC---CCCCHHHHHHHHHHHHHHHhhcCCCCCCC
Q 013999          304 EAIQIGAQAIKK---NKISVEELQLCLEELEESIDLQKQAEKVIVPSY---TGIDDEDIEEEFKKLEQEVECERPKPTVS  377 (432)
Q Consensus       304 ~al~~g~~aLk~---~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~---~~~De~ELe~EL~~Le~E~~~~~~~~~~p  377 (432)
                      +||++|+.|||.   .+.+.|+|+++||+|+|.++.++||+++|+.+.   .+.+|++||+||+.|+.+.+....+ ..|
T Consensus       317 ~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L~~D~~k~e~~-~lp  395 (439)
T KOG2911|consen  317 QAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDLEADEKKNEDL-VLP  395 (439)
T ss_pred             HHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHHHhccccCCcc-CCC
Confidence            999999999998   257999999999999999999999999996643   3678999999999999988774321 111


Q ss_pred             CCCCCCCCCc-ccHHHHHHHhccCCcCCCCC
Q 013999          378 KTGVNEPAAS-ESAESLRVAFSTIGLNDGQA  407 (432)
Q Consensus       378 ~~~~~~~~~~-~~~~~l~~~L~~L~~~d~~~  407 (432)
                      ..+.+...+. .++.++...+..|+..+++.
T Consensus       396 ~~~~sr~~~~r~sd~el~~~~~~le~~~~~~  426 (439)
T KOG2911|consen  396 LNSVSRDFLKRLSDLELLTNEDSLEKTEGPL  426 (439)
T ss_pred             CCCchHHHhhhcchhhhccccchhhhhcCcc
Confidence            1221111221 44555666666666655443

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=100.00  E-value=1e-31  Score=238.84  Aligned_cols=169  Identities=27%  Similarity=0.382  Sum_probs=161.5

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 013999          212 VSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLS  291 (432)
Q Consensus       212 ~~~Ite~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~  291 (432)
                      .+.||+.|+||++||.++++|.++.+.+++.++..+..||.+++.|.|.+|+.+||+|+.+|..|.+..++|.||+++++
T Consensus         8 ~~~Itd~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvs   87 (209)
T KOG2910|consen    8 KSRITDQDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVS   87 (209)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHhh
Q 013999          292 LIENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEVEC  369 (432)
Q Consensus       292 ~Ie~a~~n~~v~~al~~g~~aLk~--~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~~~~De~ELe~EL~~Le~E~~~  369 (432)
                      .||.+..++.|++.|+.||.+||+  ..+++|+|+.+|||.+|++++|+||+++|++.++..|+++|.+||++|+.|...
T Consensus        88 diEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~~dEddi~~EldaLese~~~  167 (209)
T KOG2910|consen   88 DIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSAEDEDDILAELDALESELEV  167 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999998  478999999999999999999999999999989999999999999999999877


Q ss_pred             cCCCCCCCCCC
Q 013999          370 ERPKPTVSKTG  380 (432)
Q Consensus       370 ~~~~~~~p~~~  380 (432)
                      +..+|.+|.+.
T Consensus       168 e~e~PevPs~e  178 (209)
T KOG2910|consen  168 EAELPEVPSTE  178 (209)
T ss_pred             hhhcCCCCCCC
Confidence            65458888764

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=99.98  E-value=9e-31  Score=239.40  Aligned_cols=156  Identities=17%  Similarity=0.221  Sum_probs=148.0

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 013999          214 SISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLI  293 (432)
Q Consensus       214 ~Ite~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~I  293 (432)
                      .-|....||++|+.+++.|+++...|+.+|+.+...||.++++|+|.+|+.|||+||++|++|++..+++.||++++..|
T Consensus        21 ~~~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~i  100 (191)
T PTZ00446         21 NNDEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINL  100 (191)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34668999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCCCHHHHHHHHHHHHHHHhh
Q 013999          294 ENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVPS-YTGIDDEDIEEEFKKLEQEVEC  369 (432)
Q Consensus       294 e~a~~n~~v~~al~~g~~aLk~--~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~-~~~~De~ELe~EL~~Le~E~~~  369 (432)
                      |+|+.|.+||.||+.|++|||.  .+|++|+||++||+|+|+++.++||+++|+.+ ..++||+||++||++|++|.-.
T Consensus       101 E~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e~l~  179 (191)
T PTZ00446        101 ENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQTME  179 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998  48999999999999999999999999999875 3678999999999999986543

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.9e-28  Score=220.27  Aligned_cols=156  Identities=20%  Similarity=0.269  Sum_probs=143.5

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 013999          214 SISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKS-ALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSL  292 (432)
Q Consensus       214 ~Ite~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~-ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~  292 (432)
                      +.| -+.+|.+|+.+++.|.++.+.|+++|...... |+.|..+ +|..|+.||||||.+|++|.++.+.+.+|+.++..
T Consensus        16 ~~t-~~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~A~k~~tk-NKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~a   93 (221)
T KOG1656|consen   16 KPT-PQEAIQKLRETEEMLEKKQEFLEKKIEQEVENNARKYGTK-NKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREA   93 (221)
T ss_pred             CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            344 67899999999999999999999999998666 7777655 89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCC---CCCCHHHHHHHHHHHHHHH
Q 013999          293 IENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVPSY---TGIDDEDIEEEFKKLEQEV  367 (432)
Q Consensus       293 Ie~a~~n~~v~~al~~g~~aLk~--~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~---~~~De~ELe~EL~~Le~E~  367 (432)
                      ||+|.+|.+|+++|..|++|||.  .++++|+|+++||+|.|+.+..+||++||+.+.   .++|||||.+||++|++|.
T Consensus        94 lEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqee  173 (221)
T KOG1656|consen   94 LENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEE  173 (221)
T ss_pred             HHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHH
Confidence            99999999999999999999998  599999999999999999999999999998765   3799999999999999886


Q ss_pred             hhcC
Q 013999          368 ECER  371 (432)
Q Consensus       368 ~~~~  371 (432)
                      .+..
T Consensus       174 ld~~  177 (221)
T KOG1656|consen  174 LDKE  177 (221)
T ss_pred             HHHH
Confidence            6543

>PTZ00464 SNF-7-like protein; Provisional

Probab=99.95  E-value=1.5e-26  Score=216.09  Aligned_cols=158  Identities=16%  Similarity=0.250  Sum_probs=137.6

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 013999          212 VSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASL---HSGNKTVALRHAKQLKLTKESREKCTSLLNRVEE  288 (432)
Q Consensus       212 ~~~Ite~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~---~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~  288 (432)
                      .+++| .+-+|-.|......|+++|..|+.++..++..++..-   +.+.|++|+.|||+||++|++++++.+++.||++
T Consensus        11 ~p~~t-~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq   89 (211)
T PTZ00464         11 TPKPT-LEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQ   89 (211)
T ss_pred             CCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677 5555688999999999999888877777666554321   1225899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCC---CCCCHHHHHHHHHHH
Q 013999          289 VLSLIENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVPSY---TGIDDEDIEEEFKKL  363 (432)
Q Consensus       289 ~l~~Ie~a~~n~~v~~al~~g~~aLk~--~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~---~~~De~ELe~EL~~L  363 (432)
                      ++..|+++++|..||+||+.|++|||.  .+|++|+||++||+|+|+++.++||+++|++++   .++||+||++||++|
T Consensus        90 ~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~L  169 (211)
T PTZ00464         90 LQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDAL  169 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence            999999999999999999999999998  489999999999999999999999999998765   468999999999999


Q ss_pred             HHHHhhc
Q 013999          364 EQEVECE  370 (432)
Q Consensus       364 e~E~~~~  370 (432)
                      +.|...+
T Consensus       170 e~e~~~e  176 (211)
T PTZ00464        170 DFDMEKE  176 (211)
T ss_pred             HHHHhcc
Confidence            9986543

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=99.91  E-value=1.4e-24  Score=197.39  Aligned_cols=151  Identities=28%  Similarity=0.439  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013999          221 DVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK  300 (432)
Q Consensus       221 ~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~Ie~a~~n~  300 (432)
                      +|++|+.++..|++++..|+.+|+.+..+|+.++++|++..|+.|||++|.+++.++++..++.+|+.++.+|+.|..+.
T Consensus         2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~   81 (171)
T PF03357_consen    2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQ   81 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCC---CCCCHHHHHHHHHHHHHHHhhcC
Q 013999          301 KVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVPSY---TGIDDEDIEEEFKKLEQEVECER  371 (432)
Q Consensus       301 ~v~~al~~g~~aLk~--~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~---~~~De~ELe~EL~~Le~E~~~~~  371 (432)
                      .|+.+|+.|+++|+.  .++++++|+++|+++++.++.+++|+++|+..+   .++||+||++||++|+.|...+.
T Consensus        82 ~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~~  157 (171)
T PF03357_consen   82 QVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEIEEEE  157 (171)
T ss_dssp             HHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS----------------TTSTTCHHHHHHHCCCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            999999999999998  489999999999999999999999999998766   56889999999999999876654

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=8.5e-18  Score=150.73  Aligned_cols=150  Identities=19%  Similarity=0.296  Sum_probs=134.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 013999          218 LDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSG-----NKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSL  292 (432)
Q Consensus       218 ~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~-----~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~  292 (432)
                      .--+|-.+-..-+.++++|.+|+.++-.++.+.+.- |.|     -|++|++.||+||.||.+.+.+.++-.|+++.-..
T Consensus        17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t   95 (218)
T KOG1655|consen   17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFT   95 (218)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            445777888888888888888888888888876542 555     47899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--CCCHHHHHHHHHHHHHHHh
Q 013999          293 IENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVPSYT--GIDDEDIEEEFKKLEQEVE  368 (432)
Q Consensus       293 Ie~a~~n~~v~~al~~g~~aLk~--~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~~--~~De~ELe~EL~~Le~E~~  368 (432)
                      ++.-+++..+|.||+.|++.||.  ..|++|+|+++-|+|.+.++..+||+++|+.+++  ++||+||+.||++|-+|..
T Consensus        96 ~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELdaL~~E~d  175 (218)
T KOG1655|consen   96 AESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPDIDEADLDAELDALGQELD  175 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHhHhh
Confidence            99999999999999999999998  5899999999999999999999999999988764  6899999999999977644

>KOG4068 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=1.8e-07  Score=82.02  Aligned_cols=142  Identities=20%  Similarity=0.273  Sum_probs=98.6

Q ss_pred             CCC--CCcHHHHHHHHHHHHHHHHHCCceEECccc-cchhhhhc----CCCCCCCHHHHHHHHHHCCCeeehhhhhcccC
Q 013999           32 GQR--SDWEPKFQFWKNLILKIARHFSLAIIHPSQ-VKNEWFNR----GGLTPLCFDDVLFVMYNEGDVVRSVDLVDAAS  104 (432)
Q Consensus        32 ~n~--~gy~ani~fW~~lI~~~~~~~~~~~~~~~~-l~~~~f~r----~~~~P~~L~~Vi~emv~~g~li~~~ef~~~~~  104 (432)
                      .||  +.++..+.+|.++|.+||++++..++++++ ..+.+|..    ....|-++++|+.+|.++|.+-|.+    .. 
T Consensus        16 ~Qpn~~Tr~qQl~aW~~lil~ycr~~k~~smsI~~~~~s~LfnN~~l~R~Ls~~~i~~Il~~l~k~g~~e~~D----k~-   90 (174)
T KOG4068|consen   16 RQPNSNTRQQQLAAWIDLILQYCRHNKIWSMSIDEAQESPLFNNEKLQRRLSQEFIDEILEELEKKGLAEPTD----KR-   90 (174)
T ss_pred             ecCCchhHHHHHHHHHHHHHHHHHhcCeEEEEecchhcccccchHHHhccCCHHHHHHHHHHHHHccCCcccc----cC-
Confidence            355  789999999999999999999999998887 44456664    4456778999999999999665553    11 


Q ss_pred             CchhHHHHhhhhhccccCCCcccccCccEeehHHHHHHHHHHHHHHhhccccCccccchhhHHhh-------hCCcch--
Q 013999          105 GRLTQLFRKVRSLMARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDK-------CGGQDE--  175 (432)
Q Consensus       105 gw~swl~~~~~~~~~~~~~~~~~l~~~~~V~~~~l~~~a~~i~~~~~~~~~~sd~v~s~~ef~~~-------~~~~~d--  175 (432)
                                              ...-+|.|..+.+-|..|++++.++... ..|+|+.|+.+-       |+.-++  
T Consensus        91 ------------------------rt~f~I~Wrs~dewgnmIyqW~~dsg~~-nti~TlYElt~Gddt~~~efh~lde~l  145 (174)
T KOG4068|consen   91 ------------------------RTRFFIYWRSLDEWGNMIYQWVSDSGQL-NTICTLYELTEGDDTVNEEFHGLDEAL  145 (174)
T ss_pred             ------------------------ceEEEEEEcCHHHHHHHHHHHHHHcCcC-CCceEEEEeccCCcccchhhcCccHHH
Confidence                                    1224566666677799999999986654 347776666532       111112  


Q ss_pred             HHHHHHHHhccCccceeeeecCCceeEEEe
Q 013999          176 ASAVLSFLTGRGKALYLSISKNEFTEGVKV  205 (432)
Q Consensus       176 ~~vlL~yL~~~~~~k~v~~~~~~~~~~IKf  205 (432)
                      +.-+|.-|...+|+..+.+  +++..+|||
T Consensus       146 L~~aL~~L~ek~raelm~~--~~~~~gvKf  173 (174)
T KOG4068|consen  146 LLKALKLLEEKGRAELMKD--SNKVIGVKF  173 (174)
T ss_pred             HHHHHHHHHhcCceeEeec--CCCceeEEe
Confidence            3347777887777644432  235678888

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=0.00012  Score=66.74  Aligned_cols=143  Identities=16%  Similarity=0.224  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013999          228 TVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQ  307 (432)
Q Consensus       228 ~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~Ie~a~~n~~v~~al~  307 (432)
                      ++..|+.....|+.+-..+-..+|.-.++|+-..++-.-|.--..-.++.+......+|+.+-.+|..-.++..+.++|+
T Consensus        24 a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aMk  103 (224)
T KOG3230|consen   24 ATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMK  103 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            33344444445554444455555666678875544444443334445566778888999999999999999999999999


Q ss_pred             HHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-CCHHHHHHHHHHHHHHHhhc
Q 013999          308 IGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVPSYTG-IDDEDIEEEFKKLEQEVECE  370 (432)
Q Consensus       308 ~g~~aLk~--~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~~~-~De~ELe~EL~~Le~E~~~~  370 (432)
                      -.+++|..  ..+++-.+.++|.+++-+-+..+-..++++....+ .+++|=|+|-++|...+-++
T Consensus       104 GaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDE  169 (224)
T KOG3230|consen  104 GATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDE  169 (224)
T ss_pred             HHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence            99999998  48999999999999998888777766666543322 23444455555565554443

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=0.00056  Score=61.23  Aligned_cols=176  Identities=18%  Similarity=0.284  Sum_probs=121.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 013999          218 LDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALR----HAKQLKLTKESREKCTSLLNRVEEVLSLI  293 (432)
Q Consensus       218 ~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~----~Lr~KK~~ek~l~~~~~~l~~le~~l~~I  293 (432)
                      ....+++||-+-..|+++-...+++-...+.+++.++.+|+.+.|+-    ++|+|...-..    ...-.++..+..++
T Consensus         7 le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~----LrlssRvDAVaaRv   82 (203)
T KOG3232|consen    7 LENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNY----LRLSSRVDAVAARV   82 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            55678999999999999999999888888899999999999877664    45665544333    33445678888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHH----HHHhhCCCCC-CCCHHHHHHHHHHHHHH
Q 013999          294 ENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQ----AEKVIVPSYT-GIDDEDIEEEFKKLEQE  366 (432)
Q Consensus       294 e~a~~n~~v~~al~~g~~aLk~--~~i~~e~Ve~~~ddi~E~~~~~~E----I~~~L~~~~~-~~De~ELe~EL~~Le~E  366 (432)
                      +.|.+-..|-..|..-.+.|-.  ..+++++|-.+||..+-+-++.+=    +..++++... ..+.++++.    |.++
T Consensus        83 qTavtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~----Lmq~  158 (203)
T KOG3232|consen   83 QTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDS----LMQQ  158 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHH----HHHH
Confidence            9999999999999988888887  589999999999999887776553    3444443221 334444433    3333


Q ss_pred             HhhcC--------CCCCCCCCCCCCCCCcccHHHHHHHhccCC
Q 013999          367 VECER--------PKPTVSKTGVNEPAASESAESLRVAFSTIG  401 (432)
Q Consensus       367 ~~~~~--------~~~~~p~~~~~~~~~~~~~~~l~~~L~~L~  401 (432)
                      ..++.        |.+-+|..+.........+++|.++|..|+
T Consensus       159 vADeaGlElnq~lp~~~~~a~~~~t~~~~~e~d~L~qRLaaLR  201 (203)
T KOG3232|consen  159 VADEAGLELNQELPQNVVPAISVKTSAVVDEEDDLTQRLAALR  201 (203)
T ss_pred             HHHHhchhhhhcCCCCCCCCcCCCCccccchhhHHHHHHHHHh
Confidence            33322        222223332222222333488999998775

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=0.00017  Score=66.32  Aligned_cols=150  Identities=18%  Similarity=0.209  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013999          222 VLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKK  301 (432)
Q Consensus       222 I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~Ie~a~~n~~  301 (432)
                      -..|++...+|..|+..|+..-.......|++.++|++..++.+-|.--..-+...+++...-+|..+..++..+-...-
T Consensus        20 q~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~r   99 (227)
T KOG3229|consen   20 QSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATLR   99 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHH
Confidence            45788888999999999999888888889999999999988888888888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh-c-CCChHHHHHHHHHHHHHHHHHHHHHHhhCCCC----C-CCCHHHHHHHHHHHHHHHhhcC
Q 013999          302 VSEAIQIGAQAIKK-N-KISVEELQLCLEELEESIDLQKQAEKVIVPSY----T-GIDDEDIEEEFKKLEQEVECER  371 (432)
Q Consensus       302 v~~al~~g~~aLk~-~-~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~----~-~~De~ELe~EL~~Le~E~~~~~  371 (432)
                      +...|+.|+++||. + =+.+-.+-.+|-++.-.|-+.-=|.+++....    + ...++|.++|.++..-+...+.
T Consensus       100 ~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it~~~  176 (227)
T KOG3229|consen  100 VAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEITGEK  176 (227)
T ss_pred             HHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHhccc
Confidence            99999999999998 4 45888899999999999998887777773321    2 2257788888999988887765

>PF05871 ESCRT-II: ESCRT-II complex subunit; InterPro: IPR008570 This entry represents the vps25 subunit (vacuolar protein sorting-associated protein 25) of the endosome-associated complex ESCRT-II (Endosomal Sorting Complexes Required for Transport protein II)

Probab=97.99  E-value=7.8e-06  Score=71.95  Aligned_cols=107  Identities=18%  Similarity=0.307  Sum_probs=77.8

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHCCceEECcccc-chhhhhc----CCCCCCCHHHHHHHHHHCCCeeehhhhhcccCCch
Q 013999           33 QRSDWEPKFQFWKNLILKIARHFSLAIIHPSQV-KNEWFNR----GGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRL  107 (432)
Q Consensus        33 n~~gy~ani~fW~~lI~~~~~~~~~~~~~~~~l-~~~~f~r----~~~~P~~L~~Vi~emv~~g~li~~~ef~~~~~gw~  107 (432)
                      |++-+...+..|++||++||++++...+++.+. ...+|..    +...|-++..|+++|++.|.....    +.     
T Consensus        14 n~~Tr~~Ql~~W~~lIl~y~~~~k~~~l~~~e~~~~~lF~N~~I~R~L~~e~~~~Il~~Lv~~g~aew~----~~-----   84 (139)
T PF05871_consen   14 NPETREKQLELWSDLILDYCRHHKIFRLSLSEALESPLFNNESINRRLSPEFIREILDELVQKGNAEWI----DK-----   84 (139)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTT-SEEECHHHHCCCTTEETTTTEE--HHHHHHHHHHHHCTTSEEEC----ST-----
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhceeeeecccccCCCCccCccccCCCCHHHHHHHHHHHHhcCCeEEe----eC-----
Confidence            447899999999999999999999988887652 2345664    346788999999999999943332    10     


Q ss_pred             hHHHHhhhhhccccCCCcccccCccEeehHHHHHHHHHHHHHHhhccccCccccchhhHHhh
Q 013999          108 TQLFRKVRSLMARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDK  169 (432)
Q Consensus       108 swl~~~~~~~~~~~~~~~~~l~~~~~V~~~~l~~~a~~i~~~~~~~~~~sd~v~s~~ef~~~  169 (432)
                                          .+..-+|++..+++.|+.|++++.++... ..|+|+.|+.+-
T Consensus        85 --------------------~~~~~~I~Wrt~~eWa~~I~~Wv~~~G~~-gtV~TlyEL~~G  125 (139)
T PF05871_consen   85 --------------------SKTRCLIYWRTPEEWADLIYDWVESTGQL-GTVCTLYELTEG  125 (139)
T ss_dssp             --------------------TSCEEEE-SS-HHHHHHHHHHHHHCCTTT-TSEEEHHHHHCT
T ss_pred             --------------------CCCEEEEEeCCHHHHHHHHHHHHHhCCCC-CCeEEehhcccC
Confidence                                12346788888888999999999886654 579998887653

ESCRT (ESCRT-I, -II, -III) complexes orchestrate efficient sorting of ubiquitinated transmembrane receptors to lysosomes via multivesicular bodies (MVBs) []. ESCRT-II recruits the transport machinery for protein sorting at MVB []. In addition, the human ESCRT-II has been shown to form a complex with RNA polymerase II elongation factor ELL in order to exert transcriptional control activity. ESCRT-II transiently associates with the endosomal membrane and thereby initiates the formation of ESCRT-III, a membrane-associated protein complex that functions immediately downstream of ESCRT-II during sorting of MVB cargo. ESCRT-II in turn functions downstream of ESCRT-I, a protein complex that binds to ubiquitinated endosomal cargo []. ESCRT-II is a trilobal complex composed of two copies of vps25, one copy of vps22 and the C-terminal region of vps36. The crystal structure of vps25 revealed two winged-helix domains, the N-terminal domain of vps25 interacting with vps22 and vps35 [].; PDB: 1W7P_B 1U5T_D 1XB4_D 3HTU_E 3CUQ_C 2ZME_D.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=97.98  E-value=0.00061  Score=64.71  Aligned_cols=150  Identities=21%  Similarity=0.255  Sum_probs=117.4

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----
Q 013999          214 SISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEE-----  288 (432)
Q Consensus       214 ~Ite~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~-----  288 (432)
                      .+.+...++..+......++++++.++..+.....+|..++..|+-+.|+.+|.+|+.++..+.....++..+..     
T Consensus        38 ~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l  117 (221)
T PF04012_consen   38 QLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKL  117 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788899999999999999999999999999999999999999999999999999999988888777665444     


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 013999          289 ------VLSLIENAESTKKVSEAIQIGAQAIKK-----NKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIE  357 (432)
Q Consensus       289 ------~l~~Ie~a~~n~~v~~al~~g~~aLk~-----~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~~~~De~ELe  357 (432)
                            +-.+|.........+.+-....++-+.     .++++++....++.|++.++..+--.++......  +...++
T Consensus       118 ~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~~--~~~~~e  195 (221)
T PF04012_consen  118 KEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAELAD--SDQDLE  195 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHHhcc--CcccHH
Confidence                  455666677777777777777777665     2667778888888888777777666666644221  222388


Q ss_pred             HHHHHHHH
Q 013999          358 EEFKKLEQ  365 (432)
Q Consensus       358 ~EL~~Le~  365 (432)
                      .+|+++..
T Consensus       196 ~~l~~~~~  203 (221)
T PF04012_consen  196 AELEELER  203 (221)
T ss_pred             HHHHHhcC
Confidence            88887753

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK10698 phage shock protein PspA; Provisional

Probab=97.87  E-value=0.0035  Score=59.76  Aligned_cols=129  Identities=9%  Similarity=0.065  Sum_probs=100.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------
Q 013999          216 SSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVE--------  287 (432)
Q Consensus       216 te~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le--------  287 (432)
                      .+.-.++..+......+++++..++..+.....+|+.++.+|+-..|+.+|.+|+.++..+..+..++....        
T Consensus        41 ~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~  120 (222)
T PRK10698         41 VEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKK  120 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355778899999999999999999999999999999999999999999999999999988777766655444        


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 013999          288 ---EVLSLIENAESTKKVSEAIQIGAQAIKK-----NKISVEELQLCLEELEESIDLQKQAEKVI  344 (432)
Q Consensus       288 ---~~l~~Ie~a~~n~~v~~al~~g~~aLk~-----~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L  344 (432)
                         .+-.+|+.+..-..++-|=..++.+-+.     .+++.+..=.-++.+++-++..+-=.+++
T Consensus       121 ~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~  185 (222)
T PRK10698        121 EIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESH  185 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHh
Confidence               4456788888888888888888888776     25555544455555555555554444444

>TIGR02977 phageshock_pspA phage shock protein A

Probab=97.67  E-value=0.01  Score=56.34  Aligned_cols=146  Identities=16%  Similarity=0.153  Sum_probs=104.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH------
Q 013999          215 ISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEE------  288 (432)
Q Consensus       215 Ite~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~------  288 (432)
                      +.+.-.++..+......++++++.++..+.....+|+.++..|+-..|+.+|.+|+.++..+..+..++..+..      
T Consensus        40 l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~  119 (219)
T TIGR02977        40 LVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQ  119 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788999999999999999999999999999999999999999999999999999998777766655544      


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHH
Q 013999          289 -----VLSLIENAESTKKVSEAIQIGAQAIKK-----NKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEE  358 (432)
Q Consensus       289 -----~l~~Ie~a~~n~~v~~al~~g~~aLk~-----~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~~~~De~ELe~  358 (432)
                           +-.+|+.+......+-|=...+.+-+.     .+++.+..-..++.|.+-++..+--.++... .   +.+.|+.
T Consensus       120 ~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~~~-~---~~~~l~~  195 (219)
T TIGR02977       120 EDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESYDL-G---RKPSLED  195 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhhc-c---CCCCHHH
Confidence                 444566666666655555555555443     2556666666666666554444433333321 1   1234777


Q ss_pred             HHHHHH
Q 013999          359 EFKKLE  364 (432)
Q Consensus       359 EL~~Le  364 (432)
                      ||.+|+
T Consensus       196 ~l~~l~  201 (219)
T TIGR02977       196 EFAELE  201 (219)
T ss_pred             HHHHhc
Confidence            777774

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=97.52  E-value=0.015  Score=55.38  Aligned_cols=148  Identities=18%  Similarity=0.201  Sum_probs=111.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------
Q 013999          217 SLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVL------  290 (432)
Q Consensus       217 e~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l------  290 (432)
                      +.-.++.++......++.++..+..+++.+..+|+.++..|+-..|...|-++..+|+.+......+.++.+..      
T Consensus        42 ~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~  121 (225)
T COG1842          42 KARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQ  121 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567888888889999999999999999999999999999999999999999999999988887776655544      


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHH
Q 013999          291 -----SLIENAESTKKVSEAIQIGAQAIKK-----NKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEF  360 (432)
Q Consensus       291 -----~~Ie~a~~n~~v~~al~~g~~aLk~-----~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~~~~De~ELe~EL  360 (432)
                           .+|......+..+.|=....++-+.     .+++.+..-..++.|++-++..+.-.++.+. +.....+++++||
T Consensus       122 ~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~e-l~~~~~~dl~~e~  200 (225)
T COG1842         122 LAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAAE-LAEGSGDDLDKEF  200 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhHH-hhccCcccHHHHH
Confidence                 3566666677777777666666664     2566667777777777777766666665553 1122445677777


Q ss_pred             HHHHH
Q 013999          361 KKLEQ  365 (432)
Q Consensus       361 ~~Le~  365 (432)
                      +++..
T Consensus       201 a~~~~  205 (225)
T COG1842         201 AQAGA  205 (225)
T ss_pred             HHhcc
Confidence            77754

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.024  Score=50.54  Aligned_cols=177  Identities=10%  Similarity=0.125  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013999          225 LIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSE  304 (432)
Q Consensus       225 Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~Ie~a~~n~~v~~  304 (432)
                      |+.+...++..-..++++-.++...+|.....|+++.++.+-++--.+-++-.+..+.-..+..+-.+-....++..+-.
T Consensus        20 LRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~   99 (208)
T KOG3231|consen   20 LRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAG   99 (208)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            44444455554445555555555556666678988887777777667777777777777778877777777888889999


Q ss_pred             HHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHH----HHHhhCCCCC-CCCHHHHHHHHHHHHHHHhhcCC--CCC
Q 013999          305 AIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQ----AEKVIVPSYT-GIDDEDIEEEFKKLEQEVECERP--KPT  375 (432)
Q Consensus       305 al~~g~~aLk~--~~i~~e~Ve~~~ddi~E~~~~~~E----I~~~L~~~~~-~~De~ELe~EL~~Le~E~~~~~~--~~~  375 (432)
                      ||-+.+++|+.  ..+.++++-..|.+++-...+.+=    |++.|-.-++ ..|++|=.+=.++...|..-+..  ...
T Consensus       100 AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~aiVNqVLDEIGIEisgKma~  179 (208)
T KOG3231|consen  100 AMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQAIVNQVLDEIGIEISGKMAK  179 (208)
T ss_pred             HhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHHHHHHHHHhhhhhcchhcc
Confidence            99999999998  488999999999999876555433    3444421111 23555555555555555443321  123


Q ss_pred             CCCC-CCCCC-CCcccHHHHHHHhccCC
Q 013999          376 VSKT-GVNEP-AASESAESLRVAFSTIG  401 (432)
Q Consensus       376 ~p~~-~~~~~-~~~~~~~~l~~~L~~L~  401 (432)
                      +|.+ +.+.. +...+..+++.+|..|.
T Consensus       180 ~P~a~s~~~~st~kat~~Die~QLa~Lr  207 (208)
T KOG3231|consen  180 APSARSLPSASTSKATISDIERQLAALR  207 (208)
T ss_pred             CCccCCCCccccCCCcHHHHHHHHHHhc
Confidence            3321 11111 11245556888887764

>PTZ00464 SNF-7-like protein; Provisional

Probab=97.06  E-value=0.036  Score=52.34  Aligned_cols=92  Identities=8%  Similarity=0.052  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCCHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013999          223 LHLIWTVEKLQLQLDIIDRHYEMSRKS---ALASLHSGNKTVALRHAKQL-KLTKESREKCTSLLNRVEEVLSLIENAES  298 (432)
Q Consensus       223 ~~Lk~~~~~L~~~i~~Le~~i~~~~~~---ak~~~~~~~k~~A~~~Lr~K-K~~ek~l~~~~~~l~~le~~l~~Ie~a~~  298 (432)
                      ..++.++..|..+++.|+++|..+...   ||+++++++. .+....|++ +.+-+.-.....++.++...+.++++...
T Consensus        14 ~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~-~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~   92 (211)
T PTZ00464         14 PTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRG-MTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQF   92 (211)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468889999999999999999888754   7777776654 444444443 22334444466778888888888888877


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 013999          299 TKKVSEAIQIGAQAIKK  315 (432)
Q Consensus       299 n~~v~~al~~g~~aLk~  315 (432)
                      ..+-...=..-..+|+.
T Consensus        93 ~ie~a~~~~~vv~amk~  109 (211)
T PTZ00464         93 TTESVKDTKVQVDAMKQ  109 (211)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77666655555555554

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.95  E-value=0.26  Score=45.38  Aligned_cols=93  Identities=13%  Similarity=0.066  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013999          223 LHLIWTVEKLQLQLDIIDRHYEMSRKSALASLH---SGNKTVALRHAKQLKLT-KESREKCTSLLNRVEEVLSLIENAES  298 (432)
Q Consensus       223 ~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~---~~~k~~A~~~Lr~KK~~-ek~l~~~~~~l~~le~~l~~Ie~a~~  298 (432)
                      -.|...+..+.++-+.++.+|..+......|-.   +-+---|+..||+|-+- -++-.-..++..+|.++-...++|+.
T Consensus        15 psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~   94 (218)
T KOG1655|consen   15 PSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANF   94 (218)
T ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            568899999999999999999999998776643   22334589999988763 34445566788888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 013999          299 TKKVSEAIQIGAQAIKK  315 (432)
Q Consensus       299 n~~v~~al~~g~~aLk~  315 (432)
                      ..+-+.--.+...|||.
T Consensus        95 t~e~LKdtq~Tv~AmK~  111 (218)
T KOG1655|consen   95 TAESLKDTQATVAAMKD  111 (218)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            87777777777777775

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=94.57  E-value=1.6  Score=40.64  Aligned_cols=76  Identities=9%  Similarity=0.043  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HHHHHHH---HHhHHHHHHHHHHHHHHHHH
Q 013999          224 HLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKL--TKESREK---CTSLLNRVEEVLSLIENAES  298 (432)
Q Consensus       224 ~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~--~ek~l~~---~~~~l~~le~~l~~Ie~a~~  298 (432)
                      ..+.++.+|..+++.|+++...+..++-..     ...|+.++++.|.  +-..|-+   ...++.++...+.++++...
T Consensus        24 ~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e-----~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~   98 (191)
T PTZ00446         24 EIYKAILKNREAIDALEKKQVQVEKKIKQL-----EIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMI   98 (191)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            388999999999999999999999887543     2457777766553  3333333   34556666666666666555


Q ss_pred             HHHHHH
Q 013999          299 TKKVSE  304 (432)
Q Consensus       299 n~~v~~  304 (432)
                      +.+-..
T Consensus        99 ~iE~a~  104 (191)
T PTZ00446         99 NLENMH  104 (191)
T ss_pred             HHHHHH
Confidence            544444

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=91.58  E-value=0.63  Score=41.76  Aligned_cols=82  Identities=15%  Similarity=0.152  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013999          228 TVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLK-----LTKESREKCTSLLNRVEEVLSLIENAESTKKV  302 (432)
Q Consensus       228 ~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK-----~~ek~l~~~~~~l~~le~~l~~Ie~a~~n~~v  302 (432)
                      ++..|...+..|++++..+..+++.+     +..|+.++++.+     .+-+..-+...++.++...+.+++......+.
T Consensus         2 ai~~Lk~~~~~L~~~~~~le~~i~~~-----~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~   76 (171)
T PF03357_consen    2 AILKLKKTIRRLEKQIKRLEKKIKKL-----EKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIET   76 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC-----HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677777777777766665533     344555555432     23334444445555555555555555555544


Q ss_pred             HHHHHHHHHHHH
Q 013999          303 SEAIQIGAQAIK  314 (432)
Q Consensus       303 ~~al~~g~~aLk  314 (432)
                      ......-..+|+
T Consensus        77 a~~~~~v~~al~   88 (171)
T PF03357_consen   77 AQSNQQVVKALK   88 (171)
T ss_dssp             HHHHHHHSSS--
T ss_pred             HHHHHHHHHHHH
Confidence            444444444444

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.12  E-value=13  Score=34.55  Aligned_cols=143  Identities=17%  Similarity=0.182  Sum_probs=106.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHH
Q 013999          217 SLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESR---EKCTSLLNRVEEVLSLI  293 (432)
Q Consensus       217 e~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l---~~~~~~l~~le~~l~~I  293 (432)
                      ..++++-.|...+..|+.|-++|=.+|..   .||.---..-|..|+.+.|.|....+..   .++.+--..++++.++-
T Consensus        20 al~~a~ReleRer~~le~qeKklvaeIKk---~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~   96 (224)
T KOG3230|consen   20 ALNKATRELERERQKLELQEKKLVAEIKK---TAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSST   96 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            45667778888888888888877666544   4554333335788999999888777654   45566677889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh---cCC--ChHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHH
Q 013999          294 ENAESTKKVSEAIQIGAQAIKK---NKI--SVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEV  367 (432)
Q Consensus       294 e~a~~n~~v~~al~~g~~aLk~---~~i--~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~~~~De~ELe~EL~~Le~E~  367 (432)
                      ..++.=+-+-.||..=|+-|.-   ..|  ..++--++||--+|.|.  +-|+++|+.   +.||+|-++=-++-..|.
T Consensus        97 sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~--daIDdal~~---~edEEEtd~lvnqVLDEi  170 (224)
T KOG3230|consen   97 SMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMD--DAIDDALGD---DEDEEETDDLVNQVLDEI  170 (224)
T ss_pred             HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcc---cchhHHHHHHHHHHHHHH
Confidence            9999999999999999999884   233  78999999999888776  468999964   446666665555555554

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=90.80  E-value=15  Score=34.63  Aligned_cols=94  Identities=18%  Similarity=0.245  Sum_probs=45.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---CC--ChHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 013999          274 ESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK-N---KI--SVEELQLCLEELEESIDLQKQAEKVIVPS  347 (432)
Q Consensus       274 k~l~~~~~~l~~le~~l~~Ie~a~~n~~v~~al~~g~~aLk~-~---~i--~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~  347 (432)
                      +...|+......|+++-..+........|..-|..++..+.. .   .|  .++.+...|+-++.-++...|..+...+ 
T Consensus        49 ~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~-  127 (204)
T COG5491          49 KARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVG-  127 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-
Confidence            344555555556666555566666666666666666666653 1   11  2333333333333322333333332222 


Q ss_pred             CC-CCCHHHHHHHHHHHHHHHh
Q 013999          348 YT-GIDDEDIEEEFKKLEQEVE  368 (432)
Q Consensus       348 ~~-~~De~ELe~EL~~Le~E~~  368 (432)
                      .. ..+.++++++++.+.-|..
T Consensus       128 ~~v~~~l~~lde~v~~v~pEi~  149 (204)
T COG5491         128 DPVLEDLEELDELVNKVLPEIG  149 (204)
T ss_pred             chhhhhHHHHHHHHHhhchhhh
Confidence            11 2346666666666654433

>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A

Probab=88.24  E-value=2.2  Score=31.97  Aligned_cols=44  Identities=18%  Similarity=0.300  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 013999          237 DIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCT  280 (432)
Q Consensus       237 ~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~  280 (432)
                      +.|+.+...++..|.++-++|+-..|+.++|.=|.++..+....
T Consensus         2 ~~L~~R~~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~~   45 (59)
T smart00685        2 ALLQQRQEQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAAR   45 (59)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHHH
Confidence            56888999999999999999999999999999999999887653

3 and human FLJ20241.

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.91  E-value=20  Score=37.19  Aligned_cols=84  Identities=17%  Similarity=0.073  Sum_probs=54.5

Q ss_pred             CCCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHHHH---HHHHhHHHHHH
Q 013999          214 SISSLDYD-VLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQ--LKLTKESR---EKCTSLLNRVE  287 (432)
Q Consensus       214 ~Ite~D~~-I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~--KK~~ek~l---~~~~~~l~~le  287 (432)
                      .|+..|-+ |-.+-..+..|.+-+..|.++|+.+.+++.++     ++.|+.++|.  |+++...|   .....-+....
T Consensus       219 ~i~~~~~~~it~~D~~V~~L~~~~~~L~kqie~L~qeie~~-----~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~  293 (439)
T KOG2911|consen  219 QIPSQDASIITEIDGSVADLIQARAKLAKQIEFLEQEIEKS-----KEKLRQALKEGKKQIAITYLRARKLLEKDLERKV  293 (439)
T ss_pred             cCCcccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHH
Confidence            44444444 88999999999999999999999999998754     4556666664  33333333   33334455555


Q ss_pred             HHHHHHHHHHHHHHH
Q 013999          288 EVLSLIENAESTKKV  302 (432)
Q Consensus       288 ~~l~~Ie~a~~n~~v  302 (432)
                      ..+.+++.-.++..-
T Consensus       294 ~~l~~l~~vl~~Id~  308 (439)
T KOG2911|consen  294 SSLNNLETVLSQIDN  308 (439)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            555555555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	432
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-14
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	3e-06
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.3 bits (179), Expect = 6e-14
 Identities = 66/433 (15%), Positives = 137/433 (31%), Gaps = 96/433 (22%)

Query: 6   VREFVLKEVPDWNDEVIATARFKAFSGQRSDWEP-KFQFWKNLILK---IARHFSLAIIH 61
           V  F  K+V D    +++          +         FW  L+ K   + + F   ++ 
Sbjct: 30  VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKFVEEVLR 88

Query: 62  P------SQVKNEWFNRGGLTPLCFDDVLFVMYNEGDVVRSVDLVDAASGRLTQLFRKVR 115
                  S +K E      +T + + +    +YN+  V    ++      RL Q + K+R
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRM-YIEQRDRLYNDNQVFAKYNVS-----RL-QPYLKLR 141

Query: 116 SLMARSAATPEILL-------KDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQD 168
             +        +L+       K   + ++V         K+  +  W     + +     
Sbjct: 142 QALLELRPAKNVLIDGVLGSGK-TWVALDVCLSY-KVQCKMDFKIFW-----LNL----- 189

Query: 169 KCGGQDEASAVLSFLTGRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWT 228
                +    VL  L    + L   I  N +T     S +      I S+    L  +  
Sbjct: 190 --KNCNSPETVLEML----QKLLYQIDPN-WTSRSDHSSNIK--LRIHSIQ-AELRRLLK 239

Query: 229 VEKLQLQLDIID-----RHYEM----------SRKSALASLHSGNKT--VALRHAKQLKL 271
            +  +  L ++      + +            +R   +    S   T  ++L H      
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 272 TKESREKCTSLLN-RVEE-----------VLSLIENAESTKKVSEAIQIGAQAIKKNKIS 319
             E +      L+ R ++            LS+I  AES +          + +  +K++
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII--AESIRDGLATWD-NWKHVNCDKLT 356

Query: 320 VEELQLCLEELEESIDLQKQ-------AEKVIVPSYT------GIDDEDIEEEFKKLEQE 366
              ++  L  LE + + +K             +P+         +   D+     KL + 
Sbjct: 357 -TIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 367 --VECERPKPTVS 377
             VE +  + T+S
Sbjct: 415 SLVEKQPKESTIS 427

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Length = 218

 Score = 47.1 bits (111), Expect = 3e-06
 Identities = 31/172 (18%), Positives = 72/172 (41%), Gaps = 7/172 (4%)

Query: 228 TVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVE 287
            +  +  Q+  I R  E  ++S   +   G K V +  AK++  ++++  K  +    + 
Sbjct: 22  EMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMN 81

Query: 288 EVLSLIENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIV 345
            VL  ++N  +  +V+ ++Q   + +K   + + + E+Q  + EL + +      E+++ 
Sbjct: 82  SVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLE 141

Query: 346 PSYTGIDD-----EDIEEEFKKLEQEVECERPKPTVSKTGVNEPAASESAES 392
            ++  +DD     E+ E E  ++  E+         SK     P        
Sbjct: 142 DTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPGAM 193

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Length = 179

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 27/143 (18%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 228 TVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVE 287
            +  +  Q+  I R  E  ++S   +   G K V +  AK++  ++++  K  +    + 
Sbjct: 22  EMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMN 81

Query: 288 EVLSLIENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIV 345
            VL  ++N  +  +V+ ++Q   + +K   + + + E+Q  + EL + +      E+++ 
Sbjct: 82  SVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLE 141

Query: 346 PSYTGI-DDEDIEEEFKKLEQEV 367
            ++  + D E++EEE +     +
Sbjct: 142 DTFESMDDQEEMEEEAEMEIDRI 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	432
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	99.41
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	99.33
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	99.26
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	98.78
1xb4_A	202	VPS25, hypothetical 23.6 kDa protein in YUH1-URA8	98.71
3cuq_C	176	Vacuolar protein-sorting-associated protein 25; ES	98.61
2luh_B	59	Vacuolar protein-sorting-associated protein 60; VT	98.5
3htu_B	39	Vacuolar protein-sorting-associated protein 20; ES	97.33
2lxm_B	57	Charged multivesicular BODY protein 5; MIT, protei	97.2
3htu_A	79	Vacuolar protein-sorting-associated protein 25; ES	93.0
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	89.63
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	81.59
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	81.22

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}

Probab=99.41  E-value=1.7e-12  Score=101.77  Aligned_cols=76  Identities=20%  Similarity=0.139  Sum_probs=72.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 013999          218 LDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIE  294 (432)
Q Consensus       218 ~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~Ie  294 (432)
                      ...+|++|+.+++.|+++...|+.+|+.....||.++ .++|..|+.|||+||++|+.|+++.+++.|||+++..||
T Consensus         4 ~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~iE   79 (79)
T 4abm_A            4 EQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALE   79 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4689999999999999999999999999999999999 677999999999999999999999999999999999885

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=99.33  E-value=1.3e-12  Score=118.87  Aligned_cols=146  Identities=18%  Similarity=0.221  Sum_probs=115.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 013999          217 SLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKT----VALRHAKQLKLTKESREKCTSLLNRVEEVLSL  292 (432)
Q Consensus       217 e~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~----~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~  292 (432)
                      ........|+.+...|.+++..|+.+-..+...+|.+.++|++.    .|+.++|.||.    ..++.....+|+.+-.+
T Consensus        11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~----~~~l~~~~a~l~~v~~~   86 (179)
T 2gd5_A           11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKA----VSKLYASKAHMNSVLMG   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            46778999999999999999999999999999999999999876    68888888875    56666788889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC-----CHHHHHHHHHHHHH
Q 013999          293 IENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGI-----DDEDIEEEFKKLEQ  365 (432)
Q Consensus       293 Ie~a~~n~~v~~al~~g~~aLk~--~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~~~~-----De~ELe~EL~~Le~  365 (432)
                      ++.+.++..|..+|+.++++|+.  ..+++++|..+|+++.++++..++|+++|+..+++.     +++|.++|+++...
T Consensus        87 lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl~  166 (179)
T 2gd5_A           87 MKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILF  166 (179)
T ss_dssp             HHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999998  477999999999999999999999999997765432     34444455555444


Q ss_pred             H
Q 013999          366 E  366 (432)
Q Consensus       366 E  366 (432)
                      |
T Consensus       167 E  167 (179)
T 2gd5_A          167 E  167 (179)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}

Probab=99.26  E-value=1.9e-11  Score=100.49  Aligned_cols=55  Identities=15%  Similarity=0.377  Sum_probs=49.4

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCC---CCCCHHHHHHHHHHHHHHHhhc
Q 013999          316 NKISVEELQLCLEELEESIDLQKQAEKVIVPSY---TGIDDEDIEEEFKKLEQEVECE  370 (432)
Q Consensus       316 ~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~---~~~De~ELe~EL~~Le~E~~~~  370 (432)
                      ++|++|+|+++||+++|++++++||+++|++++   .++|++||++||++|+++...+
T Consensus         1 ~~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~   58 (104)
T 3um3_B            1 DNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDK   58 (104)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999998866   4789999999999999886443

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=98.78  E-value=1.5e-08  Score=94.25  Aligned_cols=150  Identities=18%  Similarity=0.246  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013999          222 VLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKK  301 (432)
Q Consensus       222 I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~Ie~a~~n~~  301 (432)
                      =-.|+.+...|.+++..|+++=......+|.+.++|+...|+-|-|.--..-+...++...-.+|..|-.++..+.++..
T Consensus        16 ~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~   95 (218)
T 3frt_A           16 SLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLR   95 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34788889999999999999988999999999999998877766666666666777888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-----CCCHHHHHHHHHHHHHHHhhcC
Q 013999          302 VSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVPSYT-----GIDDEDIEEEFKKLEQEVECER  371 (432)
Q Consensus       302 v~~al~~g~~aLk~--~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~~-----~~De~ELe~EL~~Le~E~~~~~  371 (432)
                      |..+|+.++++|+.  ..+++.+|..+|+++..++...+=+++++....+     +.+++|.++|.++...|.....
T Consensus        96 v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~~~~  172 (218)
T 3frt_A           96 VAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGA  172 (218)
T ss_dssp             ---CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHhHhH
Confidence            99999999999998  4789999999999999999987666666644332     2235667777777777765443

>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C

Probab=98.71  E-value=3.2e-08  Score=90.80  Aligned_cols=151  Identities=18%  Similarity=0.254  Sum_probs=103.5

Q ss_pred             CCCC--CCcHHHHHHHHHHHHHHHHHCCceEECccc-cch-------------------hhhhc----CCCCCCCHHHHH
Q 013999           31 SGQR--SDWEPKFQFWKNLILKIARHFSLAIIHPSQ-VKN-------------------EWFNR----GGLTPLCFDDVL   84 (432)
Q Consensus        31 ~~n~--~gy~ani~fW~~lI~~~~~~~~~~~~~~~~-l~~-------------------~~f~r----~~~~P~~L~~Vi   84 (432)
                      ..||  +-+...+..|++||++||++++..++++.+ ...                   .+|..    +...|-.+..||
T Consensus        15 TlQPn~~Tr~~Ql~~W~~LIL~ycr~~ki~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pLF~N~~I~RrLs~e~~~~Il   94 (202)
T 1xb4_A           15 TRQPNSLTRRQQISTWIDIISQYCKTKKIWYMSVDGTVINDNELDSGSTDNDDSKKISKNLFNNEDIQRSVSQVFIDEIW   94 (202)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHHHHHHHTTCCEEETTSBBCCC-----------------CBTTEETTTTEECCHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHhCeeEeccccccccccccccccccccccccccCCCcCCccccCcCCHHHHHHHH
Confidence            3355  789999999999999999999998887765 221                   35754    235677899999


Q ss_pred             HHHHHCCCeeehhhhhcccCCchhHHHHhhhhhccccCCCcccccCccEeehHHHHHHHHHHHHHHhhccccCccccchh
Q 013999           85 FVMYNEGDVVRSVDLVDAASGRLTQLFRKVRSLMARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMK  164 (432)
Q Consensus        85 ~emv~~g~li~~~ef~~~~~gw~swl~~~~~~~~~~~~~~~~~l~~~~~V~~~~l~~~a~~i~~~~~~~~~~sd~v~s~~  164 (432)
                      ++|++.|...    |.++..+              ++.   +..+..-+|+|..+++.|+.|++++.++... ..|+|+.
T Consensus        95 ~~Lv~~g~ae----w~d~~~~--------------~~~---~~~k~~~~I~Wrtp~EWa~~I~~Wv~~tG~~-~sV~Tly  152 (202)
T 1xb4_A           95 SQMTKEGKCL----PIDQSGR--------------RSS---NTTTTRYFILWKSLDSWASLILQWFEDSGKL-NQVITLY  152 (202)
T ss_dssp             HHHHHTTSEE----EESSSSB--------------CC-----CCCCEEEECSSCHHHHHHHHHHHHHTTSCT-TSCEEHH
T ss_pred             HHHHhcCCeE----EeCCCCc--------------ccc---cccCceEEEEeCCHHHHHHHHHHHHHhcCCc-CcEEEee
Confidence            9999998433    3322111              000   0112346999999999999999999986655 5699988


Q ss_pred             hHHhhhCC--------cch-HHHHHHHHhccCccceeeeecCCceeEEEee
Q 013999          165 KFQDKCGG--------QDE-ASAVLSFLTGRGKALYLSISKNEFTEGVKVS  206 (432)
Q Consensus       165 ef~~~~~~--------~~d-~~vlL~yL~~~~~~k~v~~~~~~~~~~IKf~  206 (432)
                      |+.+--..        ..+ +.-+|..|...||+.-+.   +++..||||.
T Consensus       153 EL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~GKaqi~~---~~~~~GVKF~  200 (202)
T 1xb4_A          153 ELSEGDETVNWEFHRMPESLLYYCLKPLCDRNRATMLK---DENDKVIAIK  200 (202)
T ss_dssp             HHC--CCSCCSTTTTCCHHHHHHHHHHHHGGGCCEEEE---CTTSCEEEEE
T ss_pred             hcccCCCCCCccccCCCHHHHHHHHHHHHHcCCEEEee---cCCCCeEEEE
Confidence            88764221        112 456888999999874442   2323789985

>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C

Probab=98.61  E-value=6.1e-08  Score=87.15  Aligned_cols=141  Identities=16%  Similarity=0.179  Sum_probs=101.0

Q ss_pred             CCC--CCcHHHHHHHHHHHHHHHHHCCceEECccc-cchhhhhc----CCCCCCCHHHHHHHHHHCCCeeehhhhhcccC
Q 013999           32 GQR--SDWEPKFQFWKNLILKIARHFSLAIIHPSQ-VKNEWFNR----GGLTPLCFDDVLFVMYNEGDVVRSVDLVDAAS  104 (432)
Q Consensus        32 ~n~--~gy~ani~fW~~lI~~~~~~~~~~~~~~~~-l~~~~f~r----~~~~P~~L~~Vi~emv~~g~li~~~ef~~~~~  104 (432)
                      .||  +-+...+..|++||++||++++..++++.+ ....+|..    +...|-.+..|+++|++.|...    +.++. 
T Consensus        19 lQpn~~Tr~kQl~~W~~LIl~ycr~~k~~~l~~~~~~~~pLF~N~~I~R~Ls~e~~~~il~~L~~~g~ae----w~d~~-   93 (176)
T 3cuq_C           19 LQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVKLQRKLPVESIQIVLEELRKKGNLE----WLDKS-   93 (176)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHHTCCEEEHHHHHTSTTSEETTTTEECCHHHHHHHHHHHHHHTSEE----ECSSS-
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHHHhCeeEeeccccccCCCcCCccccCcCCHHHHHHHHHHHHhcCCce----eecCC-
Confidence            355  789999999999999999999998888765 32346764    3457778999999999988332    22110 


Q ss_pred             CchhHHHHhhhhhccccCCCcccccCccEeehHHHHHHHHHHHHHHhhccccCccccchhhHHhhhCC------cch---
Q 013999          105 GRLTQLFRKVRSLMARSAATPEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGG------QDE---  175 (432)
Q Consensus       105 gw~swl~~~~~~~~~~~~~~~~~l~~~~~V~~~~l~~~a~~i~~~~~~~~~~sd~v~s~~ef~~~~~~------~~d---  175 (432)
                                              ...-+|+|..+++.|+.|++++.++... ..|+|+.|+.+--..      .-|   
T Consensus        94 ------------------------~~~~~I~Wrt~~eWa~~iy~wv~~~G~~-~sV~TlyEL~~Gd~t~~~ef~gld~~v  148 (176)
T 3cuq_C           94 ------------------------KSSFLIMWRRPEEWGKLIYQWVSRSGQN-NSVFTLYELTNGEDTEDEEFHGLDEAT  148 (176)
T ss_dssp             ------------------------SSEEEECSSCHHHHHHHHHHHHHTTTCC-SCEEEHHHHHHCTTTTTSTTTTCCHHH
T ss_pred             ------------------------CCEEEEEeCCHHHHHHHHHHHHHhcCCc-CcEEEEeeeccCCCCCCCcccCCCHHH
Confidence                                    1235788888888899999999887655 569999988764221      112   


Q ss_pred             HHHHHHHHhccCccceeeeecCCceeEEEe
Q 013999          176 ASAVLSFLTGRGKALYLSISKNEFTEGVKV  205 (432)
Q Consensus       176 ~~vlL~yL~~~~~~k~v~~~~~~~~~~IKf  205 (432)
                      +.-+|..|...||+.-+   .+++..||||
T Consensus       149 L~kaL~~L~~~gKaql~---~~~~~~GVKF  175 (176)
T 3cuq_C          149 LLRALQALQQEHKAEII---TVSDGRGVKF  175 (176)
T ss_dssp             HHHHHHHHHHHTSEEEC---CTTTSCEEEE
T ss_pred             HHHHHHHHHHcCCeEEe---ecCCCCceee
Confidence            44578889988887443   2333378998

>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}

Probab=98.50  E-value=1.4e-08  Score=73.58  Aligned_cols=50  Identities=24%  Similarity=0.411  Sum_probs=44.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-----CCCHHHHHHHHHHHHHHH
Q 013999          318 ISVEELQLCLEELEESIDLQKQAEKVIVPSYT-----GIDDEDIEEEFKKLEQEV  367 (432)
Q Consensus       318 i~~e~Ve~~~ddi~E~~~~~~EI~~~L~~~~~-----~~De~ELe~EL~~Le~E~  367 (432)
                      |++++|++++|+|.+.++..+||+++|+.++.     ++|++||++||++|..|.
T Consensus         1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de~   55 (59)
T 2luh_B            1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQED   55 (59)
T ss_dssp             CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhccc
Confidence            57899999999999999999999999976432     589999999999999874

>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}

Probab=97.33  E-value=0.00026  Score=47.30  Aligned_cols=36  Identities=25%  Similarity=0.283  Sum_probs=31.7

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013999          213 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRK  248 (432)
Q Consensus       213 ~~Ite~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~  248 (432)
                      +.||+.|+||++||.++++|.++...++..++...+
T Consensus         2 skiT~qDrAIL~LK~QRDkL~qyqkri~~~~~rE~e   37 (39)
T 3htu_B            2 SRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERA   37 (39)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            589999999999999999999999999998887554

>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}

Probab=97.20  E-value=0.00021  Score=51.62  Aligned_cols=37  Identities=22%  Similarity=0.494  Sum_probs=18.8

Q ss_pred             HHHHHHHHHhhCCCC--CCCCHHHHHHHHHHHHHHHhhc
Q 013999          334 IDLQKQAEKVIVPSY--TGIDDEDIEEEFKKLEQEVECE  370 (432)
Q Consensus       334 ~~~~~EI~~~L~~~~--~~~De~ELe~EL~~Le~E~~~~  370 (432)
                      |+..+||+++|++++  .++||+||++||++|++|...+
T Consensus         1 ~e~a~EIqealsr~~g~~diDEdEL~aELe~LeqE~~~~   39 (57)
T 2lxm_B            1 MEDANEINEALSRSYGTPELDEDDLEAELDALGDELLAD   39 (57)
T ss_dssp             ---------------CCCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             CchHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhhc
Confidence            467899999998754  3799999999999999987543

>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}

Probab=93.00  E-value=0.18  Score=38.91  Aligned_cols=67  Identities=16%  Similarity=0.129  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHHHHhhccccCccccchhhHHhhh-------CC-cch-HHHHHHHHhccCccceeeeecCCceeEEEee
Q 013999          136 MEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKC-------GG-QDE-ASAVLSFLTGRGKALYLSISKNEFTEGVKVS  206 (432)
Q Consensus       136 ~~~l~~~a~~i~~~~~~~~~~sd~v~s~~ef~~~~-------~~-~~d-~~vlL~yL~~~~~~k~v~~~~~~~~~~IKf~  206 (432)
                      |..+++.|+.|++++.++... ..|+|+.|+.+--       ++ +.+ +.-+|..|...+|+.-+.   +++.++|||.
T Consensus         4 WrspeeWa~~Iy~Wv~~~G~~-~sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~gkA~i~~---~~~~~GVKFf   79 (79)
T 3htu_A            4 GRRPEEWGKLIYQWVSRSGQN-NSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIIT---VSDGRGVKFF   79 (79)
T ss_dssp             -CCHHHHHHHHHHHHHTTCCS-CSEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTTSEEEEC---CTTSCEEEEC
T ss_pred             cCCHHHHHHHHHHHHHHcCCC-CceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCEEEEe---cCCCceeeeC
Confidence            344567799999999886655 5699999988722       11 222 345788999999874442   2323589983

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=89.63  E-value=0.61  Score=41.55  Aligned_cols=89  Identities=9%  Similarity=0.007  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013999          224 HLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVAL-RHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKV  302 (432)
Q Consensus       224 ~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~-~~Lr~KK~~ek~l~~~~~~l~~le~~l~~Ie~a~~n~~v  302 (432)
                      .|+.....|.+.+..|++++..+...-+.... .-|..|+ .....-|.+=+.+-+.-.+..+|..+..+|+........
T Consensus        11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~-~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt   89 (179)
T 2gd5_A           11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKR-SVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN   89 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46888888999999999988887766553321 1122222 122233556677777777888888888888877776555


Q ss_pred             HHHHHHHHHHH
Q 013999          303 SEAIQIGAQAI  313 (432)
Q Consensus       303 ~~al~~g~~aL  313 (432)
                      ..+...-..+|
T Consensus        90 ~~~~~~v~~am  100 (179)
T 2gd5_A           90 QLAVLRVAGSL  100 (179)
T ss_dssp             HHHHHHHTSSC
T ss_pred             HHHHHHHHHHH
Confidence            54433333333

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=81.59  E-value=13  Score=28.81  Aligned_cols=68  Identities=13%  Similarity=0.140  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 013999          223 LHLIWTVEKLQLQLDIIDRHYEMSRKSALA-SLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVL  290 (432)
Q Consensus       223 ~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~-~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l  290 (432)
                      ++.+.-++.|..+|..|+.+|..+....-. .+-..+......++.+...++..|+.+......|+.+.
T Consensus        18 ykeqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~~   86 (89)
T 2lw1_A           18 YKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALK   86 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            678888999999999999999998877533 22345677777888899999999999988887776653

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=81.22  E-value=27  Score=32.35  Aligned_cols=119  Identities=14%  Similarity=0.167  Sum_probs=60.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 013999          217 SLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENA  296 (432)
Q Consensus       217 e~D~~I~~Lk~~~~~L~~~i~~Le~~i~~~~~~ak~~~~~~~k~~A~~~Lr~KK~~ek~l~~~~~~l~~le~~l~~Ie~a  296 (432)
                      ..|..|..|+..+..|...+..|+.++..+...+-..     +.....+=+..+.++..++.........+..+..   +
T Consensus        15 ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~-----~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~---v   86 (256)
T 3na7_A           15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNL-----EEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE---I   86 (256)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---c
Confidence            4666777777777777777777777776666543221     2223333344455555555555555555554432   2


Q ss_pred             HHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 013999          297 ESTKKVSEAIQIGAQAIKK-NKISVEELQLCLEELEESIDLQKQAEKVI  344 (432)
Q Consensus       297 ~~n~~v~~al~~g~~aLk~-~~i~~e~Ve~~~ddi~E~~~~~~EI~~~L  344 (432)
                      . |..=+++|..=...++. ...--+.+-.+|+.+.+.....++....+
T Consensus        87 ~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l  134 (256)
T 3na7_A           87 K-SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM  134 (256)
T ss_dssp             S-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 33334555555555543 22333444444444444433333333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	432
d1xb4a1	124	Vacuolar protein sorting-associated protein VPS25	97.09

>d1xb4a1 a.4.5.54 (A:2-125) Vacuolar protein sorting-associated protein VPS25 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Vacuolar sorting protein domain
domain: Vacuolar protein sorting-associated protein VPS25
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00014  Score=59.57  Aligned_cols=66  Identities=14%  Similarity=0.267  Sum_probs=50.8

Q ss_pred             CCCC--CCcHHHHHHHHHHHHHHHHHCCceEECcccc--------------------chhhhhc----CCCCCCCHHHHH
Q 013999           31 SGQR--SDWEPKFQFWKNLILKIARHFSLAIIHPSQV--------------------KNEWFNR----GGLTPLCFDDVL   84 (432)
Q Consensus        31 ~~n~--~gy~ani~fW~~lI~~~~~~~~~~~~~~~~l--------------------~~~~f~r----~~~~P~~L~~Vi   84 (432)
                      ..||  +-....+..|++||++||++++..++++.+-                    ...+|..    +...|-.+.+|+
T Consensus        14 TlQPn~~Tr~kQl~~W~~LIL~ycr~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pLF~N~~I~R~Ls~e~~~~Il   93 (124)
T d1xb4a1          14 TRQPNSLTRRQQISTWIDIISQYCKTKKIWYMSVDGTVINDNELDSGSTDNDDSKKISKNLFNNEDIQRSVSQVFIDEIW   93 (124)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHHHHHHHTTCCEEETTSBBCCC-----------------CBTTEETTTTEECCHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHhceeeeeccccccccccccccccccccccccCCCCccCcccCCcCCHHHHHHHH
Confidence            4455  7899999999999999999999888776541                    1235664    346788999999


Q ss_pred             HHHHHCCCeeeh
Q 013999           85 FVMYNEGDVVRS   96 (432)
Q Consensus        85 ~emv~~g~li~~   96 (432)
                      ++|+++|..-..
T Consensus        94 ~~Lv~~G~Aew~  105 (124)
T d1xb4a1          94 SQMTKEGKCLPI  105 (124)
T ss_dssp             HHHHHTTSEEEE
T ss_pred             HHHHHcCCceee
Confidence            999999965443