Citrus Sinensis ID: 014005

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
Protein Sequence
MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRYEPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAGMDSILQPDPIAIFYVSSPMVLEVQEG
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEcccccccccccccEEEEEEEcccccEEEEEccccEEEEEEEEccccccccccccccccEEccccccccccccEEEEEEEcccccccccccEEccEEEEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEccccccEEEEEEccccccccccccEEEEEEEccccEEEEEEccccEEEEEcccccccccccccEEEccccccccccccccccccEEEEEEcccccEEEEEEccEEEEEEEEccccccEEEEEEEEcccccccccccccccccEEEEEEEEEEccccEEEEccccccccccEEEEEEEccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEccccccccccccccEEEEEEEcccccEEEEcccccEEEEEEEccccccccccccHHHHHHHccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHEEcccccccEEEEEccccEEEEEEEEccccEEEEcccccccccccccccccccccccccccccccccccccHcccccccccccEEEEccccEEEEcccHEEEEEEEEcccccEEEEccccEEEEEEcccccccEEEEEcccccHHHHHHHHHHHHcccccccEEEEEccccEEEHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcHccEEEcccccEEEEEcEEEEEEEEcccccccccccEEEEcHHHHHHHHHHHHHHccccEccEEEEEcccccEEEEcccEEEccccccccccccccEEEEccc
Coil and Loop (DISEMBL)
MILNREEASASLEWKCSqafgernpdeelqdvdivsaiefdktgdylavgdrggRVILFetvggkntpnqhisRSELEKqmdftstshpeyryktefqshepefdylKSLEIEEKINRVrwcaapngsmfilstndktiKLWKVRDQKVKKikemdhfpfvssentllaeknfmnehnppsfahgyhleWTENMATKIANVgnsvharcqkvyphahdfninsisnnsdcetfvsaDDLRINLWnleisdqcfnivdmkpsnmddltevitsaefhpIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAaeshgsksfFTEIIASISdikfandgqhllsrdymnlkvfryepvmtlsFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALsagmdsilqpdpiaifyvsspmvlevqeg
Flexible Loop (DISEMBL)
milnreeasasleWKCSQAFgernpdeelqDVDIVSAIEFDKTGDYLAVGDRGGRVILfetvggkntpnqhisrseleKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCaapngsmfilstndktiklWKVRDQKVKkikemdhfpfvsSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRYEPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAGMDSILQPDPIAIFYVSSPMVLEVQEG
Low Complexity Region (SEG)
MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFninsisnnsDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRYEPVMTLSFCGIYVWILRQLQHSRFMSIYALSCViyiittlyliNLSALSAGMDSILQPDPIAIFYVSSPMVLEVQEG
Disordered region (IsUnstruct)
*****************************QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG***************************************EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRYEPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAGMDSILQPDPIAIFYVSSPMV******
Disordered Region (DISOPRED)
**************KCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNT*******************SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS***********MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD*AESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRYEPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAGMDSILQPDPIAIFYVSSPMVLEV***
Disordered Region (DISEMBL)
************EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRYEPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAGMDSILQPDPIAIFYVSSPMVLEVQEG
Disordered Region (DISPRO)
**********SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG*********************STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM*****************************GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRYEPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAGMDSILQPDPIAIFYVSSPMVLEVQ**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRYEPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAGMDSILQPDPIAIFYVSSPMVLEVQEG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	432	2.2.26 [Sep-21-2011]
Q39247	501	Serine/threonine protein	yes	no	0.775	0.668	0.608	1e-116
Q38821	513	Serine/threonine protein	no	no	0.787	0.662	0.570	1e-111
Q0E2P1	525	Serine/threonine protein	yes	no	0.759	0.624	0.561	1e-110
A2X2K3	525	Serine/threonine protein	N/A	no	0.759	0.624	0.561	1e-110
Q5Z8Z7	581	Serine/threonine protein	no	no	0.777	0.578	0.553	1e-108
Q12702	463	Protein phosphatase PP2A	yes	no	0.759	0.708	0.468	3e-89
P53031	508	Protein phosphatase PP2A	N/A	no	0.703	0.598	0.477	4e-83
Q00362	526	Protein phosphatase PP2A	yes	no	0.733	0.602	0.456	1e-80
Q6DIY3	447	Serine/threonine-protein	yes	no	0.791	0.765	0.405	6e-78
Q54Q99	483	Serine/threonine-protein	yes	no	0.770	0.689	0.460	3e-77

>sp|Q39247|2ABB_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1

 Score =  419 bits (1077), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/350 (60%), Positives = 268/350 (76%), Gaps = 15/350 (4%)

Query: 11  SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQ 70
           SLEW+ SQ FGER   EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE     +T + 
Sbjct: 15  SLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT---DTKDH 71

Query: 71  HISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMF 130
             SR +LE Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC   NG++F
Sbjct: 72  GGSRKDLE-QTDYP-VRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALF 129

Query: 131 ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE-------NTLLAEKNFMNEHNPPSFA 183
           +LSTNDKTIK WKV+++K+KKI EM+  P  SS        N L A+K         SF 
Sbjct: 130 LLSTNDKTIKYWKVQEKKIKKISEMNIDPSESSNIPPQLVTNGLPADKGHDYLSKDFSFP 189

Query: 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINL 243
            G        +   + +   ++ ARC++VY HAHD++INSISN+SD ETF+SADDLR+NL
Sbjct: 190 PGGIPSL--RLPVVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVNL 247

Query: 244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303
           WNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHPI+CN+LAYSSS+G +RL+DMRQSALC
Sbjct: 248 WNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALC 307

Query: 304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF 353
           D   ++  +  E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM LK++
Sbjct: 308 DSHTKLFEE-PEAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLW 356

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38821|2ABA_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana GN=PP2AB1 PE=1 SV=2

 Score =  402 bits (1033), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/363 (57%), Positives = 268/363 (73%), Gaps = 23/363 (6%)

Query: 7   EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66
           + S  LEW+ SQ FGER+  EE+Q+VDI+SAIEFD +G++LA GDRGGRV+LFE     +
Sbjct: 13  DPSLPLEWRFSQVFGERSAGEEVQEVDIISAIEFDNSGNHLATGDRGGRVVLFERT---D 69

Query: 67  TPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 126
           T N   +R ELE + D+    HPE+RYKTEFQSH+PEFDYLKSLEIEEKIN++RWC   N
Sbjct: 70  TNNSSGTRRELE-EADYP-LRHPEFRYKTEFQSHDPEFDYLKSLEIEEKINKIRWCQTAN 127

Query: 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE------------KNFM 174
           G++F+LSTNDKTIK WKV+D+K+KKI +M+  P  +  N  +A                +
Sbjct: 128 GALFLLSTNDKTIKFWKVQDKKIKKICDMNSDPSRTVGNGTVASSSNSNITNSCLVNGGV 187

Query: 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVH----ARCQKVYPHAHDFNINSISNNSDC 230
           +E N  S  + + L      + ++  V  S      ARC++VY HAHD++INSISNNSD 
Sbjct: 188 SEVNN-SLCNDFSLPAGGISSLRLPVVVTSHESSPVARCRRVYAHAHDYHINSISNNSDG 246

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ETF+SADDLRINLWNLEIS+Q FNIVD+KP+ M+DL+EVITSAEFHP +CN+LAYSSS+G
Sbjct: 247 ETFISADDLRINLWNLEISNQSFNIVDVKPAKMEDLSEVITSAEFHPTHCNMLAYSSSKG 306

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
            +RL+D+RQSALCD  +++  +  E  G KSFFTEIIAS+SDIKFA +G++LLSRDYM L
Sbjct: 307 SIRLIDLRQSALCDSHSKLFEE-PEQAGPKSFFTEIIASVSDIKFAKEGRYLLSRDYMTL 365

Query: 351 KVF 353
           K++
Sbjct: 366 KLW 368

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0E2P1|2ABB_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. japonica GN=Os02g0224200 PE=2 SV=1

 Score =  400 bits (1028), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/363 (56%), Positives = 266/363 (73%), Gaps = 35/363 (9%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
           EW+ +Q FGER   E++Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE    +++     
Sbjct: 31  EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDS----A 86

Query: 73  SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
           SRSELE+Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC   N ++F+L
Sbjct: 87  SRSELERQ-DYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLL 145

Query: 133 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE--------------------NTLLAEKN 172
           STNDKTIK WKV+++KVK+I  M+     +S+                    N   +EK 
Sbjct: 146 STNDKTIKYWKVQERKVKRISVMN---LNTSQSSGNGTTSSSSSSSSRAILPNGGCSEKL 202

Query: 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH--ARCQKVYPHAHDFNINSISNNSDC 230
           +   +N   F  G       ++   +   G  ++   RC++VY HAHD++INSISNNSD 
Sbjct: 203 YNFPNNDLLFPPG----GCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDG 258

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ET++SADDLRINLWNLEIS+Q FNIVD+KP+NM+DLTEVIT AEFHP +CN LAYSSS+G
Sbjct: 259 ETYISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKG 318

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
            +RL+D+RQSALCD+ A++  +  E+ GS+SFFTEIIAS+SDIKFA DG+H+LSRDYM L
Sbjct: 319 SIRLIDLRQSALCDNHAKLFEE-HEAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTL 377

Query: 351 KVF 353
           K++
Sbjct: 378 KLW 380

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2X2K3|2ABB_ORYSI Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica GN=OsI_006296 PE=2 SV=2

 Score =  399 bits (1026), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/363 (56%), Positives = 266/363 (73%), Gaps = 35/363 (9%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
           EW+ +Q FGER   E++Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE    +++     
Sbjct: 31  EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDS----A 86

Query: 73  SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
           SRSELE+Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++WC   N ++F+L
Sbjct: 87  SRSELERQ-DYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLL 145

Query: 133 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE--------------------NTLLAEKN 172
           STNDKTIK WKV+++KVK+I  M+     +S+                    N   +EK 
Sbjct: 146 STNDKTIKYWKVQERKVKRISVMN---LNTSQSSGNGTTSSSSSSSSRAILPNGGCSEKL 202

Query: 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH--ARCQKVYPHAHDFNINSISNNSDC 230
           +   +N   F  G       ++   +   G  ++   RC++VY HAHD++INSISNNSD 
Sbjct: 203 YNFPNNDLLFPPG----GCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDG 258

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ET++SADDLRINLWNLEIS+Q FNIVD+KP+NM+DLTEVIT AEFHP +CN LAYSSS+G
Sbjct: 259 ETYISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKG 318

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
            +RL+D+RQSALCD+ A++  +  E+ GS+SFFTEIIAS+SDIKFA DG+H+LSRDYM L
Sbjct: 319 SIRLIDLRQSALCDNHAKLFEE-HEAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTL 377

Query: 351 KVF 353
           K++
Sbjct: 378 KLW 380

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q5Z8Z7|2ABA_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica GN=Os06g0563300 PE=2 SV=2

 Score =  392 bits (1007), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/367 (55%), Positives = 269/367 (73%), Gaps = 31/367 (8%)

Query: 6   EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK 65
           ++   ++EW+ +Q FGER   E++Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE    +
Sbjct: 23  QQGHPTMEWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDAR 82

Query: 66  NTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP 125
           +    + SR E+E+Q D   T HPE+RYK+EFQSHEPEFDYLKSLEIEEKIN++RWC   
Sbjct: 83  D----NASRREMERQ-DAPITRHPEFRYKSEFQSHEPEFDYLKSLEIEEKINKIRWCQTA 137

Query: 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-----------HFPFVSSENTLLA----- 169
           N S+ +LSTNDKTIK WKV+++KVK++  M+                SS   LL      
Sbjct: 138 NNSLSLLSTNDKTIKYWKVQEKKVKQVSVMNLDSRSVGTGTSSSASTSSSRGLLPNGGCS 197

Query: 170 -EKNFMNEH--NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN 226
            + +F+N     PP    GY    +  +   +A+   ++ ARC++VY HAHD++INSIS 
Sbjct: 198 DKSSFLNSDILFPPG---GYP---SLRLPVVVASQDVNLVARCRRVYAHAHDYHINSIST 251

Query: 227 NSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 286
           NSD ET++SADDLRINLWNLEI++Q FNIVD+KP NM+DLTEVIT AEFHP +CN LAYS
Sbjct: 252 NSDGETYISADDLRINLWNLEINNQSFNIVDVKPPNMEDLTEVITCAEFHPTHCNTLAYS 311

Query: 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346
           SS+G +RL+D+RQSALCD+ ++I  +  E+ GS+SFFTEIIASISDIKF+ DG+++LSRD
Sbjct: 312 SSKGSIRLIDLRQSALCDNHSKIFEE-HEAPGSRSFFTEIIASISDIKFSRDGRYILSRD 370

Query: 347 YMNLKVF 353
           YM LK++
Sbjct: 371 YMTLKLW 377

The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q12702|2ABA_SCHPO Protein phosphatase PP2A regulatory subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab1 PE=1 SV=2

 Score =  329 bits (843), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 178/380 (46%), Positives = 245/380 (64%), Gaps = 52/380 (13%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
           +WK +Q FG++   E++ + DI+SA+EFD TGDYLA GD+GGRV+LFE            
Sbjct: 10  QWKFAQCFGDKGDVEDITEADIISAVEFDHTGDYLATGDKGGRVVLFE------------ 57

Query: 73  SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
            R+  +K          EY++ TEFQSHEPEFDYLKSLEIEEKIN++RWC   N + F+L
Sbjct: 58  -RNHSKKGC--------EYKFFTEFQSHEPEFDYLKSLEIEEKINKIRWCKRTNRAHFLL 108

Query: 133 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192
           STNDKTIKLWK+ ++ +K                ++AE N  +  + P    G     ++
Sbjct: 109 STNDKTIKLWKLYEKNLK----------------VVAENNLSDSFHSP--MQGPLTTPSQ 150

Query: 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC 252
               ++ +    + A  ++VY +AH ++INSIS NSD ET++SADDLRINLWNL ISD  
Sbjct: 151 LRLPRLNHHDMIIAAYPRRVYANAHAYHINSISVNSDAETYISADDLRINLWNLSISDHS 210

Query: 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312
           FNIVD+KP NM++LTEVITSAEFHPI CN L YSSS+G ++L+D+RQSALCD+  ++  D
Sbjct: 211 FNIVDIKPENMEELTEVITSAEFHPINCNHLMYSSSKGNIKLLDLRQSALCDNPCKLFED 270

Query: 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF----RYEPVMTLSFCGIYV 368
             E   SKSFF+EII+SISD+KF+ +G+++LSRDY+ LK++       PV T+       
Sbjct: 271 -QEDQDSKSFFSEIISSISDVKFSQNGRYILSRDYLTLKIWDVNMEKAPVKTIP------ 323

Query: 369 WILRQLQHSRFMSIYALSCV 388
             L  +  S+   +Y   C+
Sbjct: 324 --LHDVLRSKLCDLYENDCI 341

Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P53031|2ABA_CANTR Protein phosphatase PP2A regulatory subunit B OS=Candida tropicalis GN=CDC55 PE=3 SV=1

 Score =  308 bits (790), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 167/350 (47%), Positives = 238/350 (68%), Gaps = 46/350 (13%)

Query: 17  SQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSE 76
           SQ FG++   E + + DI+S +EFD TGD+LA GD+GGRV+LFE             R++
Sbjct: 6   SQCFGDKGDIENITEADIISTVEFDHTGDFLATGDKGGRVVLFE-------------RNQ 52

Query: 77  LEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND 136
            +K+         EY++ TEFQSH+ EFDYLKSLEIEEKIN+++W  + N S+ +LSTND
Sbjct: 53  SKKKQSC------EYKFFTEFQSHDAEFDYLKSLEIEEKINKIKWLKSANDSLCLLSTND 106

Query: 137 KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-NMA 195
           KTIKLWK++++++K +          SEN L    N +N H P S      L+  +  + 
Sbjct: 107 KTIKLWKIQERQIKLV----------SENNL----NGLN-HLPSSNIGIESLKLPQLQLH 151

Query: 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNI 255
            K+      + A+ +K+Y +AH ++INSIS NSD ET++SADDLRINLWNL I+DQ FNI
Sbjct: 152 DKL------ISAQPKKIYANAHAYHINSISVNSDQETYLSADDLRINLWNLGIADQSFNI 205

Query: 256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE 315
           VD+KP+NM++LTEVITSAEFHP+ CNL  YSSS+G ++L DMR ++LCD  A+I  +  +
Sbjct: 206 VDIKPANMEELTEVITSAEFHPLQCNLFMYSSSKGTIKLSDMRSNSLCDSHAKIFEEYLD 265

Query: 316 SHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF----RYEPVMTL 361
              S +FFTEI +SISD+KF++DG+++ SRDYM +K++      +P+ T+
Sbjct: 266 P-SSHNFFTEITSSISDVKFSHDGRYIASRDYMTVKIWDLAMENKPIKTI 314

Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates.

Candida tropicalis (taxid: 5482)

>sp|Q00362|2ABA_YEAST Protein phosphatase PP2A regulatory subunit B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC55 PE=1 SV=2

 Score =  300 bits (768), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 158/346 (45%), Positives = 228/346 (65%), Gaps = 29/346 (8%)

Query: 8   ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNT 67
           A  + ++K SQ FG++  D  + + D+++A+EFD TG+YLA GD+GGRV+LFE       
Sbjct: 2   AQNNFDFKFSQCFGDK-ADIVVTEADLITAVEFDYTGNYLATGDKGGRVVLFER------ 54

Query: 68  PNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG 127
                           +++ H EY++ TEFQSH+ EFDYLKSLEIEEKIN ++W      
Sbjct: 55  ----------------SNSRHCEYKFLTEFQSHDAEFDYLKSLEIEEKINEIKWLRPTQR 98

Query: 128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187
           S F+LSTNDKTIKLWKV ++ +K + + +      +E    A+K   + HN    +    
Sbjct: 99  SHFLLSTNDKTIKLWKVYEKNIKLVSQNN-----LTEGVTFAKKGKPDNHNSRGGSVRAV 153

Query: 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLE 247
           L        +++     + A  +++Y +AH ++INSIS NSD ETF+SADDLRINLWNL+
Sbjct: 154 LSLQSLKLPQLSQHDKIIAATPKRIYSNAHTYHINSISLNSDQETFLSADDLRINLWNLD 213

Query: 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 307
           I DQ FNIVD+KP+NM++LTEVITSAEFHP  CNL  YSSS+G ++L DMRQ++LCD+  
Sbjct: 214 IPDQSFNIVDIKPTNMEELTEVITSAEFHPQECNLFMYSSSKGTIKLCDMRQNSLCDNKT 273

Query: 308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF 353
           +   +  +   + +FFTEI +SISDIKF+ +G+++ SRDY+ +K++
Sbjct: 274 KTFEEYLDPI-NHNFFTEITSSISDIKFSPNGRYIASRDYLTVKIW 318

Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6DIY3|2ABD_XENTR Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Xenopus tropicalis GN=ppp2r2d PE=2 SV=1

 Score =  291 bits (746), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 164/404 (40%), Positives = 241/404 (59%), Gaps = 62/404 (15%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
            +W  SQ  G    DE++ + DI+S +EF+ +GD LA GD+GGRV++F+           
Sbjct: 10  FQWCFSQVKGA--IDEDVAEADIISTVEFNCSGDLLATGDKGGRVVIFQR---------- 57

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
                 E++      S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+
Sbjct: 58  ------EQENKSRPHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFL 111

Query: 132 LSTNDKTIKLWKV--RDQKVKKI-------KEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182
           LSTNDKTIKLWK+  RD++V+         +  D F   S    +L   + M E +P   
Sbjct: 112 LSTNDKTIKLWKISERDKRVEGYNLKDDDGRLRDPFRITSLRVPILKPMDLMVEASP--- 168

Query: 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRIN 242
                                      ++++ +AH ++INSIS NSD ET++SADDLRIN
Sbjct: 169 ---------------------------RRIFANAHTYHINSISVNSDHETYLSADDLRIN 201

Query: 243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302
           LW+LEI+D+ FNIVD+KP+NM++LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SAL
Sbjct: 202 LWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRDSAL 261

Query: 303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRYEPVMTLS 362
           CD  ++   +  E   S+SFF+EII+SISD+KF+N G+++++RDY+++KV+     + + 
Sbjct: 262 CDRHSKFFEE-PEDPSSRSFFSEIISSISDVKFSNSGRYMMTRDYLSVKVWD----LNME 316

Query: 363 FCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG 406
              +  + + +   S+  S+Y   C+       +  + SA+  G
Sbjct: 317 SRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTG 360

B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing ppp2r2d (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ensa and arpp19 inhibitors. PP2A complexes containing ppp2r2d (PR55-delta) also regulate the activity of TGF-beta/Activin/Nodal signaling by restricting receptor activity. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.

Xenopus tropicalis (taxid: 8364)

>sp|Q54Q99|PH2AB_DICDI Serine/threonine-protein phosphatase 2A regulatory subunit phr2AB OS=Dictyostelium discoideum GN=phr2aB PE=3 SV=1

 Score =  289 bits (739), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 169/367 (46%), Positives = 242/367 (65%), Gaps = 34/367 (9%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
           L+W+ SQ FG +  +E+  D ++V AIEFD+TGD++AVGD+GG+V+L +    K    Q 
Sbjct: 5   LDWRFSQTFGGKG-NEDASDANVVPAIEFDQTGDFIAVGDKGGKVLLLKRTHDK----QS 59

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
             +S+L           PEYR+ +EFQSHEPEFDYLKSLEIEEKIN+++WC   N + F+
Sbjct: 60  SKKSKL-----------PEYRFYSEFQSHEPEFDYLKSLEIEEKINKIKWCPKQNDAQFL 108

Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYHLEW 190
           L+TNDKTIKLWKV ++K+K++         S   +L +       H    + + G H   
Sbjct: 109 LTTNDKTIKLWKVYEKKIKQVSTSATTTGPSYNGSLASNNTRSPSHTTYIYNSSGAHNMN 168

Query: 191 TENMAT------------KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD 238
                +            K+      V A  +K++ +AH ++INSIS NSD ET++S+DD
Sbjct: 169 NNMNNSNNNNNLNNFKIPKLTTRETVVTATPRKIFQNAHAYHINSISLNSDGETYISSDD 228

Query: 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298
           LRI+LWNL I+ +CFN+VD+KP+NM+DLTEVITSAEFHP  CN+  YSSS+G ++L D+R
Sbjct: 229 LRIHLWNLNINTECFNVVDIKPTNMEDLTEVITSAEFHPTSCNIFMYSSSKGTIKLGDLR 288

Query: 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF----R 354
            SALCD+ A++  +  E   +KSFF+EII+SISDIKF+ DG+++LSRD++ LK++     
Sbjct: 289 SSALCDNHAKVFEE-YEDPSNKSFFSEIISSISDIKFSRDGRYILSRDFLTLKLWDINME 347

Query: 355 YEPVMTL 361
            +PV T+
Sbjct: 348 NKPVKTI 354

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
359491379	507	PREDICTED: serine/threonine protein phos	0.798	0.680	0.716	1e-148
255540613	506	protein phosphatase pp2a regulatory subu	0.793	0.677	0.724	1e-146
297733754	503	unnamed protein product [Vitis vinifera]	0.789	0.677	0.713	1e-145
224133594	520	predicted protein [Populus trichocarpa]	0.793	0.659	0.690	1e-142
449440662	514	PREDICTED: serine/threonine protein phos	0.812	0.682	0.655	1e-133
449477652	416	PREDICTED: serine/threonine protein phos	0.812	0.843	0.661	1e-133
356508685	506	PREDICTED: serine/threonine protein phos	0.803	0.685	0.617	1e-125
224128562	512	predicted protein [Populus trichocarpa]	0.791	0.667	0.601	1e-116
449476671	509	PREDICTED: serine/threonine protein phos	0.789	0.669	0.602	1e-116
11094369	515	Ser/Thr specific protein phosphatase 2A	0.805	0.675	0.592	1e-116

>gi|359491379|ref|XP_002278753.2| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/356 (71%), Positives = 308/356 (86%), Gaps = 11/356 (3%)

Query: 7   EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66
           ++S+SL+WK SQAFGER P E++QD+D++SA+EF+K+GDYLAVGDRGGRV++FE    K+
Sbjct: 6   DSSSSLQWKFSQAFGERAPGEDVQDIDMISAMEFEKSGDYLAVGDRGGRVVVFERKDEKD 65

Query: 67  TPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 126
           + NQ  SR+ELE Q+DFT+  HP + YKTEFQSHEPEFDYL+SLEIEEKIN+VRWCA PN
Sbjct: 66  SLNQWHSRNELE-QLDFTTIQHPIFHYKTEFQSHEPEFDYLRSLEIEEKINKVRWCATPN 124

Query: 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186
            S+FILSTNDKTIKLWKV+D K KK+KE++  PFV SEN LLAE +F++  + PS A+GY
Sbjct: 125 ESLFILSTNDKTIKLWKVKDHKPKKVKELNPNPFVHSENVLLAESSFVSGQDKPSVANGY 184

Query: 187 HLEWTE---NMA------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSAD 237
            LEWTE   NM+       K+AN+G +V ARC+KVY HAHD+NINSISNNSD ETFVSAD
Sbjct: 185 ALEWTEKIDNMSPSQDTHAKVANIGETVSARCRKVYAHAHDYNINSISNNSDGETFVSAD 244

Query: 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297
           DLRINLWNLEISDQCFNI+DMKPSNM+DLTEVIT+AEFHPI+CNLLAYSSSRGF+RLVD+
Sbjct: 245 DLRINLWNLEISDQCFNIIDMKPSNMEDLTEVITAAEFHPIHCNLLAYSSSRGFIRLVDL 304

Query: 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF 353
           RQSA+CDH+ARIL+   ES G KSFFTEI++SISDIKFA+DG+HLLSRDYMNLK++
Sbjct: 305 RQSAICDHNARILQH-GESSGLKSFFTEIVSSISDIKFASDGRHLLSRDYMNLKLW 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540613|ref|XP_002511371.1| protein phosphatase pp2a regulatory subunit B, putative [Ricinus communis] gi|223550486|gb|EEF51973.1| protein phosphatase pp2a regulatory subunit B, putative [Ricinus communis]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 258/356 (72%), Positives = 298/356 (83%), Gaps = 13/356 (3%)

Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
           LEWK SQ FGER P E++QD D+VSAIEFDK+GDYLAVGDRGGRV++FE    K+TPNQ+
Sbjct: 14  LEWKFSQVFGERIPGEDVQDADVVSAIEFDKSGDYLAVGDRGGRVVIFERKDRKDTPNQY 73

Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
            SR+ELE  +DFT T HP Y+YKTEFQSHEPEFDYLKSLEIEEKINR++WCA PNGS+FI
Sbjct: 74  NSRNELE-TLDFTFTGHPIYQYKTEFQSHEPEFDYLKSLEIEEKINRIKWCATPNGSLFI 132

Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191
           LSTNDKTIKLWKV++ K KK+KE+D    V SE+ LLAE++F+ E   PS  +GYHL WT
Sbjct: 133 LSTNDKTIKLWKVKECKAKKVKEIDPTSIVCSESALLAERSFIREQGKPS--NGYHLGWT 190

Query: 192 ENMA-------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLW 244
           EN +       TK A   ++  A C+KVY HAHDFNINSISNNSD ETF+SADDLRINLW
Sbjct: 191 ENNSSPFQEGHTKFACAEDTTRASCRKVYAHAHDFNINSISNNSDGETFISADDLRINLW 250

Query: 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD 304
           NLEISDQCFNI+DMKPSNM+DLTEVITSAEFHP+YCN+LAYSSSRGF+ LVDMRQSALCD
Sbjct: 251 NLEISDQCFNIIDMKPSNMEDLTEVITSAEFHPLYCNMLAYSSSRGFIHLVDMRQSALCD 310

Query: 305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF--RYEPV 358
            SARIL+D AE  GSKSFFTEIIASISD+KF NDG H+LSRDYMNLK++  R +P+
Sbjct: 311 QSARILQD-AECRGSKSFFTEIIASISDVKFTNDGHHILSRDYMNLKLWDIRMDPL 365

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733754|emb|CBI15001.3| unnamed protein product [Vitis vinifera]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 254/356 (71%), Positives = 306/356 (85%), Gaps = 15/356 (4%)

Query: 7   EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66
           ++S+SL+WK SQAFGER P E++QD+D++SA+EF+K+GDYLAVGDRGGRV++FE    K+
Sbjct: 6   DSSSSLQWKFSQAFGERAPGEDVQDIDMISAMEFEKSGDYLAVGDRGGRVVVFER---KD 62

Query: 67  TPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 126
             + H SR+ELE Q+DFT+  HP + YKTEFQSHEPEFDYL+SLEIEEKIN+VRWCA PN
Sbjct: 63  EKDWH-SRNELE-QLDFTTIQHPIFHYKTEFQSHEPEFDYLRSLEIEEKINKVRWCATPN 120

Query: 127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186
            S+FILSTNDKTIKLWKV+D K KK+KE++  PFV SEN LLAE +F++  + PS A+GY
Sbjct: 121 ESLFILSTNDKTIKLWKVKDHKPKKVKELNPNPFVHSENVLLAESSFVSGQDKPSVANGY 180

Query: 187 HLEWTE---NMA------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSAD 237
            LEWTE   NM+       K AN+G +V ARC+KVY HAHD+NINSISNNSD ETFVSAD
Sbjct: 181 ALEWTEKIDNMSPSQDTHAKRANIGETVSARCRKVYAHAHDYNINSISNNSDGETFVSAD 240

Query: 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297
           DLRINLWNLEISDQCFNI+DMKPSNM+DLTEVIT+AEFHPI+CNLLAYSSSRGF+RLVD+
Sbjct: 241 DLRINLWNLEISDQCFNIIDMKPSNMEDLTEVITAAEFHPIHCNLLAYSSSRGFIRLVDL 300

Query: 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF 353
           RQSA+CDH+ARIL+   ES G KSFFTEI++SISDIKFA+DG+HLLSRDYMNLK++
Sbjct: 301 RQSAICDHNARILQH-GESSGLKSFFTEIVSSISDIKFASDGRHLLSRDYMNLKLW 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133594|ref|XP_002321613.1| predicted protein [Populus trichocarpa] gi|222868609|gb|EEF05740.1| predicted protein [Populus trichocarpa]

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/355 (69%), Positives = 295/355 (83%), Gaps = 12/355 (3%)

Query: 9   SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTP 68
           S  L+WK SQ FGE  P E+LQDVD+VS+I F+K+GDYLAVGDRGGRV++F+   GK+TP
Sbjct: 16  SPPLDWKFSQVFGETTPGEDLQDVDVVSSIGFEKSGDYLAVGDRGGRVVIFQAKHGKHTP 75

Query: 69  NQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS 128
           N  ++R+ELE+ +D   T+HPEY+YKTEFQSHEPEFDYLKS+EIEEKINRV+WC+  NGS
Sbjct: 76  NSFLNRNELER-LDCAFTTHPEYQYKTEFQSHEPEFDYLKSMEIEEKINRVKWCSTSNGS 134

Query: 129 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188
           +FILSTNDKTIKLWKV ++K+KK++EM+H   V SEN LL E +FM+E + P   +GY+L
Sbjct: 135 LFILSTNDKTIKLWKVSEKKLKKVREMEHHSVVCSENDLLGEGSFMSELDKPPTTNGYNL 194

Query: 189 EWTENMA----------TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD 238
           +W E +A          TKI +   +  A C+KVY HAHDFNINSISNNSD ETF+S+DD
Sbjct: 195 DWAEKIAKDTLSSQEVQTKITHTEEATRANCRKVYAHAHDFNINSISNNSDGETFISSDD 254

Query: 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298
           LRINLWNLEISDQCFNI+DMKPSNM+DLTEVIT AEFHPI+CNLLAYSSSRGF RLVDMR
Sbjct: 255 LRINLWNLEISDQCFNIIDMKPSNMEDLTEVITVAEFHPIHCNLLAYSSSRGFTRLVDMR 314

Query: 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF 353
           QSA+CDHSARIL+D AE  GSKSFFTE+IASISD+KF  DGQH+L+RDYMNLK++
Sbjct: 315 QSAICDHSARILQD-AECRGSKSFFTELIASISDMKFTYDGQHILTRDYMNLKLW 368

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440662|ref|XP_004138103.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Cucumis sativus]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/363 (65%), Positives = 289/363 (79%), Gaps = 12/363 (3%)

Query: 1   MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60
           M +  +   A  +WK SQ FGER   E++QDVDI+SAI FDKTGD LA+GDRGGRVI+FE
Sbjct: 1   MTVGNDSLCAPPQWKFSQVFGERVAGEDIQDVDIISAIGFDKTGDNLAIGDRGGRVIIFE 60

Query: 61  TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
              GK+T   + +RS+LE Q++ T   HPEY+YKTEFQSHEPEFDYLKSLEIEEKIN+++
Sbjct: 61  RKDGKDTFKNYPTRSKLE-QLNLTPACHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKIK 119

Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180
           WC +PNGS FILSTNDKTIKLWKV++ KVK +KEM+   FVS EN LLAE +F +E +  
Sbjct: 120 WCVSPNGSRFILSTNDKTIKLWKVKEHKVKTVKEMNPNRFVSLENALLAEISFTSEQDKA 179

Query: 181 SFAHGYHLEWTENMATK----------IANVGNSVHARCQKVYPHAHDFNINSISNNSDC 230
           S ++G H   +ENM             IA+  N+   RC+KVY HAHD+NINSISNNSD 
Sbjct: 180 SLSNGCHWNLSENMEMSNVACKDIRGMIADQDNTSWRRCRKVYAHAHDYNINSISNNSDG 239

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ETF+SADDLRINLWNLEISDQCFNI+DMKPSNM+DLTE+I+SAEFHP++CNLLAYSSSRG
Sbjct: 240 ETFISADDLRINLWNLEISDQCFNIIDMKPSNMEDLTEIISSAEFHPLHCNLLAYSSSRG 299

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
           F+RLVDMRQSALCDHSA +LR   E +  KSFFTEII+SISDIKF++DG+ ++SRDYMNL
Sbjct: 300 FIRLVDMRQSALCDHSAILLR-TEELNRPKSFFTEIISSISDIKFSSDGRFIISRDYMNL 358

Query: 351 KVF 353
           K++
Sbjct: 359 KLW 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477652|ref|XP_004155082.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Cucumis sativus]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/363 (66%), Positives = 291/363 (80%), Gaps = 12/363 (3%)

Query: 1   MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60
           M +  +   A  +WK SQ FGER   E++QDVDI+SAI FDKTGD LA+GDRGGRVI+FE
Sbjct: 1   MTVGNDSLCAPPQWKFSQVFGERVAGEDIQDVDIISAIGFDKTGDNLAIGDRGGRVIIFE 60

Query: 61  TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
              GK+T   + +RS+LE Q++ T   HPEY+YKTEFQSHEPEFDYLKSLEIEEKIN+++
Sbjct: 61  RKDGKDTFKNYPTRSKLE-QLNLTPACHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKIK 119

Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180
           WC +PNGS FILSTNDKTIKLWKV++ KVK +KEM+   FVS EN LLAE +F +E +  
Sbjct: 120 WCVSPNGSRFILSTNDKTIKLWKVKEHKVKTVKEMNPNRFVSLENALLAEISFTSEQDKA 179

Query: 181 SFAHGYHLEWTENM-----ATK-----IANVGNSVHARCQKVYPHAHDFNINSISNNSDC 230
           S ++G H   +ENM     A K     IA+  N+   RC+KVY HAHD+NINSISNNSD 
Sbjct: 180 SLSNGCHWNLSENMEMSNVACKDIRGMIADQDNTSWRRCRKVYAHAHDYNINSISNNSDG 239

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ETF+SADDLRINLWNLEISDQCFNI+DMKPSNM+DLTE+I+SAEFHP++CNLLAYSSSRG
Sbjct: 240 ETFISADDLRINLWNLEISDQCFNIIDMKPSNMEDLTEIISSAEFHPLHCNLLAYSSSRG 299

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
           F+RLVDMRQSALCDHSA +LR   E +  KSFFTEII+SISDIKF++DG+ ++SRDYMNL
Sbjct: 300 FIRLVDMRQSALCDHSAILLR-TEELNRPKSFFTEIISSISDIKFSSDGRFIISRDYMNL 358

Query: 351 KVF 353
           K++
Sbjct: 359 KLW 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508685|ref|XP_003523085.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Glycine max]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/363 (61%), Positives = 284/363 (78%), Gaps = 16/363 (4%)

Query: 1   MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60
           M  N + +SA L WK SQ  G+R P+E LQ+ DI++A+ F+K GDYLAVGDRGGRV++FE
Sbjct: 1   MTTNSDSSSAPLHWKFSQVLGQRLPNEPLQNDDIITAVAFEKRGDYLAVGDRGGRVVIFE 60

Query: 61  TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
               K   +    R ELE Q DF ++ HPE+R+KTEFQSHEPEFDYLKS+EIEEKIN+VR
Sbjct: 61  RDDRKKNVSIANDRRELE-QRDFATSRHPEFRFKTEFQSHEPEFDYLKSVEIEEKINKVR 119

Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180
           W  + +   FILSTNDKTIKLWKV++ KVK++KEM   P + SEN LLAE++F+      
Sbjct: 120 WWMSNDSLQFILSTNDKTIKLWKVKEHKVKQVKEMA--PPLCSENMLLAERSFVP--GLE 175

Query: 181 SFAHGYHLEWTE----------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC 230
           + A+GYHLEW E          ++  +I  + + + A+CQKVY +AH FNINSISNNSD 
Sbjct: 176 TTANGYHLEWIEKTPKNHLLPQDIDGEIGGMEDPIRAKCQKVYAYAHSFNINSISNNSDY 235

Query: 231 ETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 290
           ETF+SADDLRINLWNLE+SDQCFNI+DMKPSNM+DLTEVIT+AEFHP++CNLLAYSSS+G
Sbjct: 236 ETFISADDLRINLWNLEVSDQCFNIIDMKPSNMEDLTEVITAAEFHPLHCNLLAYSSSQG 295

Query: 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 350
           F+RL D+RQ+A+CDH++R+ +   ES GSKSFFTEI +SISDIKF NDGQHL+SR+YMN+
Sbjct: 296 FIRLSDLRQAAICDHASRMFQH-GESSGSKSFFTEITSSISDIKFLNDGQHLISRNYMNM 354

Query: 351 KVF 353
           K++
Sbjct: 355 KLW 357

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128562|ref|XP_002329034.1| predicted protein [Populus trichocarpa] gi|222839705|gb|EEE78028.1| predicted protein [Populus trichocarpa]

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/364 (60%), Positives = 273/364 (75%), Gaps = 22/364 (6%)

Query: 7   EASAS----LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETV 62
           EA AS    LEWK SQ FGER   EE+Q+VDI+SAIEFD++GD+LA GDRGGRV+LFE  
Sbjct: 9   EAPASPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDRSGDHLATGDRGGRVVLFERT 68

Query: 63  GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122
              +T +   SR +LE+ M +  + HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC
Sbjct: 69  ---DTKDHGGSRRDLER-MGYPISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC 124

Query: 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP--------FVSSENTLLAEKNFM 174
              NG++F+LSTNDKTIK WKV+++KVKKI EM+  P          SS N+ + ++   
Sbjct: 125 QTANGALFLLSTNDKTIKYWKVQEKKVKKISEMNVDPSKAVGNGGVASSSNSSIGKQYLA 184

Query: 175 N----EHNPPSFAHGYHLEWTENMATKIANVG-NSVHARCQKVYPHAHDFNINSISNNSD 229
           N     HN PS           ++   +      S+ ARC++VY HAHD++INSISNNSD
Sbjct: 185 NGGDKSHNLPSNDLSISPGGFPSLRLPVVTSNETSLMARCRRVYAHAHDYHINSISNNSD 244

Query: 230 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 289
            ETF+SADDLRINLWNLEIS+Q FNI D+KP+NM+DLTEVITSAEFHP +CN+LAYSSS+
Sbjct: 245 GETFISADDLRINLWNLEISNQSFNICDVKPANMEDLTEVITSAEFHPSHCNMLAYSSSK 304

Query: 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN 349
           G +RL+DMRQSALCD  A++  +  E+ GS+SFFTEIIASISDIKFA DG+H+LSRDYM 
Sbjct: 305 GSIRLIDMRQSALCDSHAKLFEE-PEAPGSRSFFTEIIASISDIKFARDGRHILSRDYMT 363

Query: 350 LKVF 353
           LK++
Sbjct: 364 LKLW 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476671|ref|XP_004154802.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Cucumis sativus]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/355 (60%), Positives = 270/355 (76%), Gaps = 14/355 (3%)

Query: 8   ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNT 67
           +S  L+WK SQ FGER   EE+Q+VDI+SAIEFDKTGD+LA GDRGGRV+LFE    K+ 
Sbjct: 14  SSQPLDWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDRKDN 73

Query: 68  PNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG 127
                +R +LEK MD + T HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC   NG
Sbjct: 74  GG---TRKDLEK-MDHSVTRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANG 129

Query: 128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH--NPPSFAHG 185
           ++F+LSTNDKTIK WKV+++K+KKI  M+     +  N  +A  +    H  N  S   G
Sbjct: 130 ALFLLSTNDKTIKFWKVQEKKIKKISNMNVDTSKAVGNGCIASSSSSTTHLPNGGSCDGG 189

Query: 186 YHLEWTENMAT-------KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD 238
           Y+    + +          + +  +S+ ARC++VY HAHD++INSISNNSD ETF+SADD
Sbjct: 190 YNHPSNDLLGAISSLRLQVVTSHESSLLARCRRVYAHAHDYHINSISNNSDGETFISADD 249

Query: 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298
           LRINLWNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHP +CN+LAYSSS+G +RLVD+R
Sbjct: 250 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLVDLR 309

Query: 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF 353
           QSALCD  A++  +  E+ GS+SFFTEIIASISDIKF  +G+H+LSRDYM LK++
Sbjct: 310 QSALCDSHAKLFEE-PEAPGSRSFFTEIIASISDIKFGTNGRHILSRDYMTLKLW 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11094369|gb|AAG29595.1|AF196288_1 Ser/Thr specific protein phosphatase 2A B regulatory subunit alpha isoform [Medicago sativa subsp. x varia]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/368 (59%), Positives = 277/368 (75%), Gaps = 20/368 (5%)

Query: 1   MILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60
           +++  EE    LEWK SQ FGER   EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE
Sbjct: 7   VVVAPEEPVQPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 66

Query: 61  TVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 120
               K+   QH SRS+LE+ MD++   HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN+++
Sbjct: 67  RTDSKD---QHGSRSDLER-MDYSVNRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIK 122

Query: 121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP- 179
           WC   NG++F+LSTNDKTIK WKV+++KVKKI +M+     +  N  +A  +  +   P 
Sbjct: 123 WCQTANGAVFLLSTNDKTIKFWKVQEKKVKKISDMNIDSSKAMGNGSIASSSNSSSSKPH 182

Query: 180 -----PS------FAHGYHLEWTENMATKIANV---GNSVHARCQKVYPHAHDFNINSIS 225
                PS       ++ +        + K+ +V     S+ ARC++VY HAHD++INSIS
Sbjct: 183 LANGGPSDKSYSYLSNDFSFPPGGLPSLKLPSVVSHETSLLARCRRVYAHAHDYHINSIS 242

Query: 226 NNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 285
           NNSD ETF+SADDLRINLWNLEIS Q FNIVD+KP+NM+DLTEVITSAEFHP +CN LAY
Sbjct: 243 NNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAY 302

Query: 286 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345
           SSS+G +RLVD+RQSALCD  A++  +  E+ GS+SFFTEIIASISDIKFA DG+++LSR
Sbjct: 303 SSSKGSIRLVDLRQSALCDSHAKLFEE-QEAPGSRSFFTEIIASISDIKFAKDGRYILSR 361

Query: 346 DYMNLKVF 353
           DYM LK++
Sbjct: 362 DYMTLKLW 369

Source: Medicago sativa subsp. x varia

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
TAIR|locus:2007963	501	ATB BETA [Arabidopsis thaliana	0.775	0.668	0.588	2.9e-103
CGD|CAL0004658	519	orf19.1468 [Candida albicans (	0.342	0.285	0.543	2.8e-80
ASPGD|ASPL0000046009	472	AN1545 [Emericella nidulans (t	0.601	0.550	0.473	1.7e-78
DICTYBASE|DDB_G0283905	483	phr2aB "protein phosphatase 2A	0.770	0.689	0.446	1.3e-77
SGD|S000003158	526	CDC55 "Non-essential regulator	0.611	0.501	0.462	6.7e-75
UNIPROTKB|Q6DIY3	447	ppp2r2d "Serine/threonine-prot	0.414	0.400	0.451	2.5e-73
UNIPROTKB|F1NNN2	450	PPP2R2D "Serine/threonine-prot	0.414	0.397	0.445	3.7e-72
UNIPROTKB|F1NS69	451	PPP2R2D "Serine/threonine-prot	0.414	0.396	0.445	3.7e-72
UNIPROTKB|Q5ZIY5	451	PPP2R2D "Serine/threonine-prot	0.414	0.396	0.445	3.7e-72
MGI|MGI:1289252	453	Ppp2r2d "protein phosphatase 2	0.414	0.395	0.451	2e-71

TAIR|locus:2007963 ATB BETA [Arabidopsis thaliana (taxid:3702)]

 Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
 Identities = 206/350 (58%), Positives = 261/350 (74%)

Query:    11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQ 70
             SLEW+ SQ FGER   EE+Q+VDI+SAIEFDK+GD+LA GDRGGRV+LFE     +T + 
Sbjct:    15 SLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT---DTKDH 71

Query:    71 HISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMF 130
               SR +LE Q D+    HPE+RYKTEFQSHEPEFDYLKSLEIEEKIN++RWC   NG++F
Sbjct:    72 GGSRKDLE-QTDYP-VRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALF 129

Query:   131 ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE-------NTLLAEKNFMNEHNPPSFA 183
             +LSTNDKTIK WKV+++K+KKI EM+  P  SS        N L A+K         SF 
Sbjct:   130 LLSTNDKTIKYWKVQEKKIKKISEMNIDPSESSNIPPQLVTNGLPADKGHDYLSKDFSFP 189

Query:   184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINL 243
              G  +  +  +   + +   ++ ARC++VY HAHD+         D ETF+SADDLR+NL
Sbjct:   190 PG-GIP-SLRLPVVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVNL 247

Query:   244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303
             WNLEIS+Q FNIVD+KP+NM+DLTEVITSAEFHPI+CN+LAYSSS+G +RL+DMRQSALC
Sbjct:   248 WNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALC 307

Query:   304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF 353
             D   ++  +  E+ GS+SFFTEIIASISDIKF+ DG+++LSRDYM LK++
Sbjct:   308 DSHTKLFEEP-EAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLW 356

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006470 "protein dephosphorylation" evidence=ISS

CGD|CAL0004658 orf19.1468 [Candida albicans (taxid:5476)]

 Score = 437 (158.9 bits), Expect = 2.8e-80, Sum P(3) = 2.8e-80
 Identities = 81/149 (54%), Positives = 113/149 (75%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             + A+ +K+Y +AH +         D ET++SADDLRINLWNL I+DQ FNIVD+KP+NM+
Sbjct:   159 ISAQPKKIYANAHAYHINSISVNSDQETYLSADDLRINLWNLGIADQSFNIVDIKPANME 218

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVITSAEFHP  CNL  YSSS+G ++L DMR ++LCD  A+I  +  +   S +FFT
Sbjct:   219 ELTEVITSAEFHPSQCNLFMYSSSKGTIKLSDMRSNSLCDSHAKIFEEYLDP-SSHNFFT 277

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKVF 353
             EI +SISD+KF++DG+++ SRDYM +K++
Sbjct:   278 EITSSISDVKFSHDGRYIASRDYMTVKIW 306

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005934 "cellular bud tip" evidence=IEA

GO:0005935 "cellular bud neck" evidence=IEA

GO:0000078 "cell shape checkpoint" evidence=IEA

GO:0032995 "regulation of fungal-type cell wall biogenesis" evidence=IEA

GO:2000769 "regulation of establishment or maintenance of cell polarity regulating cell shape" evidence=IEA

GO:0001100 "negative regulation of exit from mitosis" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0071775 "regulation of cell cycle cytokinesis" evidence=IEA

GO:0031030 "negative regulation of septation initiation signaling cascade" evidence=IEA

GO:0010971 "positive regulation of G2/M transition of mitotic cell cycle" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

ASPGD|ASPL0000046009 AN1545 [Emericella nidulans (taxid:162425)]

 Score = 646 (232.5 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
 Identities = 132/279 (47%), Positives = 188/279 (67%)

Query:    90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV 149
             EY++ TEFQSHEPEFDYLKSLEIEEKIN+++WC   N S F+LSTNDKTIKLWKV D+ +
Sbjct:    66 EYKFHTEFQSHEPEFDYLKSLEIEEKINKIKWCRRQNASHFLLSTNDKTIKLWKVFDKSL 125

Query:   150 KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS---VH 206
             K + E +    +S+E T       +     P       + + ++ A K+  + +    V 
Sbjct:   126 KVVAENN----LSTELT----PGGVGGGGAP---RAPRVSFKDSSALKLPRMTHHDTVVA 174

Query:   207 ARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL 266
             A  ++ Y +AH +         D ETF+S+DDLR+NLWNL I DQ FNIVD+KP+NM++L
Sbjct:   175 AVPRRTYANAHAYHINSISVNSDGETFISSDDLRVNLWNLNIQDQSFNIVDIKPANMEEL 234

Query:   267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 326
             TEVIT+AEFHP  CN   Y+SS+G ++L DMRQ ALCD   ++  +  E   S+SFF+EI
Sbjct:   235 TEVITAAEFHPTSCNWFMYASSKGTIKLADMRQRALCDTHHKLF-EQEEDASSRSFFSEI 293

Query:   327 IASISDIKFANDGQHLLSRDYMNLKVF----RYEPVMTL 361
             I+SISD++F++DG++++SRDY+ +K++      +PV T+
Sbjct:   294 ISSISDVRFSHDGRYIVSRDYLTVKIWDVNMERQPVKTI 332

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0031030 "negative regulation of septation initiation signaling cascade" evidence=IEA

GO:0032995 "regulation of fungal-type cell wall biogenesis" evidence=IEA

GO:2000769 "regulation of establishment or maintenance of cell polarity regulating cell shape" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0071775 "regulation of cell cycle cytokinesis" evidence=IEA

DICTYBASE|DDB_G0283905 phr2aB "protein phosphatase 2A B55 regulatory subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 164/367 (44%), Positives = 237/367 (64%)

Query:    12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
             L+W+ SQ FG +  +E+  D ++V AIEFD+TGD++AVGD+GG+V+L +    K    Q 
Sbjct:     5 LDWRFSQTFGGKG-NEDASDANVVPAIEFDQTGDFIAVGDKGGKVLLLKRTHDK----QS 59

Query:    72 ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
               +S+L           PEYR+ +EFQSHEPEFDYLKSLEIEEKIN+++WC   N + F+
Sbjct:    60 SKKSKL-----------PEYRFYSEFQSHEPEFDYLKSLEIEEKINKIKWCPKQNDAQFL 108

Query:   132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYH-LE 189
             L+TNDKTIKLWKV ++K+K++         S   +L +       H    + + G H + 
Sbjct:   109 LTTNDKTIKLWKVYEKKIKQVSTSATTTGPSYNGSLASNNTRSPSHTTYIYNSSGAHNMN 168

Query:   190 WTENMATKIANVGNS-----------VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADD 238
                N +    N+ N            V A  +K++ +AH +         D ET++S+DD
Sbjct:   169 NNMNNSNNNNNLNNFKIPKLTTRETVVTATPRKIFQNAHAYHINSISLNSDGETYISSDD 228

Query:   239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298
             LRI+LWNL I+ +CFN+VD+KP+NM+DLTEVITSAEFHP  CN+  YSSS+G ++L D+R
Sbjct:   229 LRIHLWNLNINTECFNVVDIKPTNMEDLTEVITSAEFHPTSCNIFMYSSSKGTIKLGDLR 288

Query:   299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF----R 354
              SALCD+ A++  +  E   +KSFF+EII+SISDIKF+ DG+++LSRD++ LK++     
Sbjct:   289 SSALCDNHAKVFEEY-EDPSNKSFFSEIISSISDIKFSRDGRYILSRDFLTLKLWDINME 347

Query:   355 YEPVMTL 361
              +PV T+
Sbjct:   348 NKPVKTI 354

GO:0005615 "extracellular space" evidence=IDA

GO:0005829 "cytosol" evidence=IEA;IDA

GO:0005813 "centrosome" evidence=IDA

GO:0017018 "myosin phosphatase activity" evidence=IDA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0031034 "myosin filament assembly" evidence=IDA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;IDA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

SGD|S000003158 CDC55 "Non-essential regulatory subunit B of protein phosphatase 2A (PP2A)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 633 (227.9 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
 Identities = 125/270 (46%), Positives = 180/270 (66%)

Query:    84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK 143
             +++ H EY++ TEFQSH+ EFDYLKSLEIEEKIN ++W      S F+LSTNDKTIKLWK
Sbjct:    55 SNSRHCEYKFLTEFQSHDAEFDYLKSLEIEEKINEIKWLRPTQRSHFLLSTNDKTIKLWK 114

Query:   144 VRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 203
             V ++ +K + + +      +E    A+K   + HN    +    L        +++    
Sbjct:   115 VYEKNIKLVSQNN-----LTEGVTFAKKGKPDNHNSRGGSVRAVLSLQSLKLPQLSQHDK 169

Query:   204 SVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM 263
              + A  +++Y +AH +         D ETF+SADDLRINLWNL+I DQ FNIVD+KP+NM
Sbjct:   170 IIAATPKRIYSNAHTYHINSISLNSDQETFLSADDLRINLWNLDIPDQSFNIVDIKPTNM 229

Query:   264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323
             ++LTEVITSAEFHP  CNL  YSSS+G ++L DMRQ++LCD+  +   +  +   + +FF
Sbjct:   230 EELTEVITSAEFHPQECNLFMYSSSKGTIKLCDMRQNSLCDNKTKTFEEYLDPI-NHNFF 288

Query:   324 TEIIASISDIKFANDGQHLLSRDYMNLKVF 353
             TEI +SISDIKF+ +G+++ SRDY+ +K++
Sbjct:   289 TEITSSISDIKFSPNGRYIASRDYLTVKIW 318

GO:0001100 "negative regulation of exit from mitosis" evidence=IMP

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISA;IPI

GO:0005935 "cellular bud neck" evidence=IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0000078 "cell shape checkpoint" evidence=IGI

GO:0010971 "positive regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005934 "cellular bud tip" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|Q6DIY3 ppp2r2d "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 445 (161.7 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
 Identities = 83/184 (45%), Positives = 129/184 (70%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   164 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 223

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   224 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRDSALCDRHSKFFEEP-EDPSSRSFFS 282

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKVFRYEPVMTLSFCGIYVWILRQLQHSRFMSIYA 384
             EII+SISD+KF+N G+++++RDY+++KV+     + +    +  + + +   S+  S+Y 
Sbjct:   283 EIISSISDVKFSNSGRYMMTRDYLSVKVWD----LNMESRPVETYQVHEYLRSKLCSLYE 338

Query:   385 LSCV 388
               C+
Sbjct:   339 NDCI 342

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

UNIPROTKB|F1NNN2 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 439 (159.6 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
 Identities = 82/184 (44%), Positives = 129/184 (70%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   167 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 226

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   227 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEP-EDPSSRSFFS 285

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKVFRYEPVMTLSFCGIYVWILRQLQHSRFMSIYA 384
             EII+SISD+KF++ G+++++RDY+++KV+     + +    +  + + +   S+  S+Y 
Sbjct:   286 EIISSISDVKFSHSGRYMMTRDYLSVKVWD----LNMENRPVETYQVHEYLRSKLCSLYE 341

Query:   385 LSCV 388
               C+
Sbjct:   342 NDCI 345

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

UNIPROTKB|F1NS69 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 439 (159.6 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
 Identities = 82/184 (44%), Positives = 129/184 (70%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   168 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 227

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   228 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEP-EDPSSRSFFS 286

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKVFRYEPVMTLSFCGIYVWILRQLQHSRFMSIYA 384
             EII+SISD+KF++ G+++++RDY+++KV+     + +    +  + + +   S+  S+Y 
Sbjct:   287 EIISSISDVKFSHSGRYMMTRDYLSVKVWD----LNMENRPVETYQVHEYLRSKLCSLYE 342

Query:   385 LSCV 388
               C+
Sbjct:   343 NDCI 346

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

UNIPROTKB|Q5ZIY5 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)]

 Score = 439 (159.6 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
 Identities = 82/184 (44%), Positives = 129/184 (70%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   168 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 227

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVIT+AEFHP +CN+  YSSS+G +RL DMR SALCD  ++   +  E   S+SFF+
Sbjct:   228 ELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEP-EDPSSRSFFS 286

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKVFRYEPVMTLSFCGIYVWILRQLQHSRFMSIYA 384
             EII+SISD+KF++ G+++++RDY+++KV+     + +    +  + + +   S+  S+Y 
Sbjct:   287 EIISSISDVKFSHSGRYMMTRDYLSVKVWD----LNMENRPVETYQVHEYLRSKLCSLYE 342

Query:   385 LSCV 388
               C+
Sbjct:   343 NDCI 346

GO:0007165 "signal transduction" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=ISS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0010458 "exit from mitosis" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

MGI|MGI:1289252 Ppp2r2d "protein phosphatase 2, regulatory subunit B, delta isoform" [Mus musculus (taxid:10090)]

 Score = 435 (158.2 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
 Identities = 83/184 (45%), Positives = 127/184 (69%)

Query:   205 VHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD 264
             V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+ FNIVD+KP+NM+
Sbjct:   170 VEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANME 229

Query:   265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324
             +LTEVIT+AEFHP  CN+  YSSS+G +RL DMR SALCD  A+   +  E   S+SFF+
Sbjct:   230 ELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSSALCDRHAKFFEEP-EDPSSRSFFS 288

Query:   325 EIIASISDIKFANDGQHLLSRDYMNLKVFRYEPVMTLSFCGIYVWILRQLQHSRFMSIYA 384
             EII+SISD+KF++ G+++++RDY+++KV+     + +    +    + +   S+  S+Y 
Sbjct:   289 EIISSISDVKFSHSGRYMMTRDYLSVKVWD----LNMEGRPVETHQVHEYLRSKLCSLYE 344

Query:   385 LSCV 388
               C+
Sbjct:   345 NDCI 348

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA

GO:0051301 "cell division" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0E2P1	2ABB_ORYSJ	No assigned EC number	0.5619	0.7592	0.6247	yes	no
Q39247	2ABB_ARATH	No assigned EC number	0.6085	0.7754	0.6686	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016042001 SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (503 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	432
COG5170	460	COG5170, CDC55, Serine/threonine protein phosphata	9e-98

>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

 Score =  300 bits (768), Expect = 9e-98
 Identities = 154/341 (45%), Positives = 209/341 (61%), Gaps = 41/341 (12%)

Query: 13  EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI 72
             K  Q FG++       + D ++A+EFD+TG YLA GD+GGRV+LFE            
Sbjct: 7   ILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFE------------ 54

Query: 73  SRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 132
            R +             EY++ TEFQSHE EFDYLKSLEIEEKIN + W      + F+L
Sbjct: 55  -REKSY---------GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104

Query: 133 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192
           STNDKTIKLWK+ ++ +K          V +EN L    +            G      E
Sbjct: 105 STNDKTIKLWKIYEKNLK----------VVAENNLSDSFHSPMG--------GPLTSTKE 146

Query: 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC 252
            +  +++     + A+  +VY +AH ++INSIS NSD ET +SADDLRINLWNLEI D  
Sbjct: 147 LLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGS 206

Query: 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312
           FNIVD+KP NM++LTEVITSAEFHP  CN+  YSSS+G ++L D+RQSALCD+S ++   
Sbjct: 207 FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL 266

Query: 313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF 353
                    FF EI++SISD KF+++G+++LSRDY+ +K++
Sbjct: 267 -TIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIW 306

Length = 460

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	432
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	99.98
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.98
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.98
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
KOG0643	327	consensus Translation initiation factor 3, subunit	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.88
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG1539	910	consensus WD repeat protein [General function pred	99.87
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.87
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.87
KOG2055	514	consensus WD40 repeat protein [General function pr	99.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.86
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.86
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.85
KOG4328	498	consensus WD40 protein [Function unknown]	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
KOG0646	476	consensus WD40 repeat protein [General function pr	99.85
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.85
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.83
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.83
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.83
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.82
KOG1274	933	consensus WD40 repeat protein [General function pr	99.82
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.82
KOG1539	910	consensus WD repeat protein [General function pred	99.82
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.81
KOG2096	420	consensus WD40 repeat protein [General function pr	99.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.81
KOG2048	691	consensus WD40 repeat protein [General function pr	99.8
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.8
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.8
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.8
KOG0649	325	consensus WD40 repeat protein [General function pr	99.79
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.79
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.79
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.78
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.78
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.78
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG4227	609	consensus WD40 repeat protein [General function pr	99.77
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.76
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.76
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.76
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.76
KOG1273	405	consensus WD40 repeat protein [General function pr	99.75
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG1963	792	consensus WD40 repeat protein [General function pr	99.71
PRK11028	330	6-phosphogluconolactonase; Provisional	99.7
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.7
KOG1310	758	consensus WD40 repeat protein [General function pr	99.7
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.7
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.69
PRK01742	429	tolB translocation protein TolB; Provisional	99.69
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.68
COG2319	466	FOG: WD40 repeat [General function prediction only	99.68
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.67
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.67
KOG2321	703	consensus WD40 repeat protein [General function pr	99.66
KOG4227	609	consensus WD40 repeat protein [General function pr	99.66
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.65
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.65
PRK01742	429	tolB translocation protein TolB; Provisional	99.65
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.64
KOG1334	559	consensus WD40 repeat protein [General function pr	99.64
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.64
KOG1963	792	consensus WD40 repeat protein [General function pr	99.64
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.63
COG2319	466	FOG: WD40 repeat [General function prediction only	99.63
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.62
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.61
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.58
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.57
KOG0649	325	consensus WD40 repeat protein [General function pr	99.57
PRK03629	429	tolB translocation protein TolB; Provisional	99.56
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.56
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.56
PRK02889	427	tolB translocation protein TolB; Provisional	99.55
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.55
PRK04922	433	tolB translocation protein TolB; Provisional	99.53
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.53
PRK03629	429	tolB translocation protein TolB; Provisional	99.52
PRK05137	435	tolB translocation protein TolB; Provisional	99.52
KOG2139	445	consensus WD40 repeat protein [General function pr	99.52
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.52
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.51
PRK05137	435	tolB translocation protein TolB; Provisional	99.5
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.49
KOG1188	376	consensus WD40 repeat protein [General function pr	99.49
PRK04922	433	tolB translocation protein TolB; Provisional	99.49
KOG1334	559	consensus WD40 repeat protein [General function pr	99.47
KOG2139	445	consensus WD40 repeat protein [General function pr	99.45
PRK02889	427	tolB translocation protein TolB; Provisional	99.45
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.45
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.44
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.43
KOG1310	758	consensus WD40 repeat protein [General function pr	99.42
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.42
KOG4547	541	consensus WD40 repeat-containing protein [General	99.41
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.41
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.39
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.39
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.38
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.37
PRK01029	428	tolB translocation protein TolB; Provisional	99.34
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.32
PRK00178	430	tolB translocation protein TolB; Provisional	99.32
PRK00178	430	tolB translocation protein TolB; Provisional	99.31
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.31
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.3
PRK04792	448	tolB translocation protein TolB; Provisional	99.3
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.29
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.29
PRK04792	448	tolB translocation protein TolB; Provisional	99.29
KOG2315	566	consensus Predicted translation initiation factor	99.28
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.28
PRK01029	428	tolB translocation protein TolB; Provisional	99.27
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.27
KOG2315	566	consensus Predicted translation initiation factor	99.25
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.23
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.23
KOG2321	703	consensus WD40 repeat protein [General function pr	99.18
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.15
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.15
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.15
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.14
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.13
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.11
COG4946	668	Uncharacterized protein related to the periplasmic	99.1
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.09
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.06
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.06
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.03
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.02
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.02
PRK04043	419	tolB translocation protein TolB; Provisional	99.02
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.02
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.01
KOG4547	541	consensus WD40 repeat-containing protein [General	98.99
COG4946	668	Uncharacterized protein related to the periplasmic	98.97
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.96
KOG2314	698	consensus Translation initiation factor 3, subunit	98.94
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.93
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.88
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.86
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.81
KOG2695	425	consensus WD40 repeat protein [General function pr	98.81
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.79
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.78
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.77
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.7
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.69
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.67
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.66
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.63
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.63
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.61
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.6
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.59
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.57
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.55
KOG2314	698	consensus Translation initiation factor 3, subunit	98.55
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.55
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.53
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.51
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.5
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.5
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.43
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.37
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.35
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.29
KOG2695	425	consensus WD40 repeat protein [General function pr	98.28
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.27
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.25
PRK04043	419	tolB translocation protein TolB; Provisional	98.23
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.19
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.18
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.16
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.13
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.08
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.07
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.06
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.98
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.95
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.92
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.89
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.89
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.86
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.85
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.84
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.81
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.78
PRK02888	635	nitrous-oxide reductase; Validated	97.76
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.67
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.59
KOG3621	726	consensus WD40 repeat-containing protein [General	97.57
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.54
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.49
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.48
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.46
KOG2395	644	consensus Protein involved in vacuole import and d	97.45
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.38
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.36
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.36
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.34
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.31
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.3
PRK02888	635	nitrous-oxide reductase; Validated	97.29
KOG3621	726	consensus WD40 repeat-containing protein [General	97.28
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.25
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.2
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.19
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.18
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.16
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.15
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.13
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.11
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.06
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.99
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.98
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.92
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.91
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.78
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.61
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.53
PRK13616	591	lipoprotein LpqB; Provisional	96.41
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.38
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.21
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.21
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.04
COG3391	381	Uncharacterized conserved protein [Function unknow	96.03
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.95
KOG2444	238	consensus WD40 repeat protein [General function pr	95.89
KOG2395	644	consensus Protein involved in vacuole import and d	95.82
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.81
COG3391	381	Uncharacterized conserved protein [Function unknow	95.76
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.74
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.58
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.51
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.44
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.29
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.27
PRK13616	591	lipoprotein LpqB; Provisional	95.25
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.21
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.17
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.91
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.88
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.68
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.63
PHA02713	557	hypothetical protein; Provisional	94.35
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.29
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.22
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	94.12
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.05
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.99
KOG2444	238	consensus WD40 repeat protein [General function pr	93.98
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.93
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.89
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	93.84
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.81
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.59
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.41
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.29
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.19
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.11
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.1
PF14727	418	PHTB1_N: PTHB1 N-terminus	93.08
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.08
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.04
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.03
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.93
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.91
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.88
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	92.76
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.72
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.98
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	91.93
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	91.81
COG5167	776	VID27 Protein involved in vacuole import and degra	91.54
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.33
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	91.21
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.12
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.92
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	90.83
PRK13684	334	Ycf48-like protein; Provisional	90.59
PHA03098	534	kelch-like protein; Provisional	90.57
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	90.22
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.76
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.52
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.19
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.0
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	88.88
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	88.74
KOG3616	1636	consensus Selective LIM binding factor [Transcript	88.57
KOG2377	657	consensus Uncharacterized conserved protein [Funct	88.54
PRK10115	686	protease 2; Provisional	87.67
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	87.07
PHA02790	480	Kelch-like protein; Provisional	86.94
PHA02713	557	hypothetical protein; Provisional	86.62
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	86.57
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.16
PRK10115	686	protease 2; Provisional	85.46
COG4590	733	ABC-type uncharacterized transport system, permeas	85.21
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	85.16
KOG2247	615	consensus WD40 repeat-containing protein [General	84.13
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	83.83
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	82.97
PRK13684	334	Ycf48-like protein; Provisional	82.74
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	82.49
KOG2247	615	consensus WD40 repeat-containing protein [General	81.87
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	81.42
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	80.3
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	80.25

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-44  Score=300.02  Aligned_cols=338  Identities=51%  Similarity=0.803  Sum_probs=286.6

Q ss_pred             hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005            6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS   85 (432)
Q Consensus         6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (432)
                      ..+...+.|+|+|.++..     ++..+.|.++.|+..|.+||||+.+|.|.++.-+.....                  
T Consensus         4 ~~~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~------------------   60 (433)
T KOG1354|consen    4 MGKNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG------------------   60 (433)
T ss_pred             cCcchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeeccccccc------------------
Confidence            345678899999999843     777889999999999999999999999999986654321                  


Q ss_pred             cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005           86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN  165 (432)
Q Consensus        86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  165 (432)
                          ++.+...++.|+++|||+++++++.+|+.+.|++..+...++..+.|++|++|.+.....+. ...+....     
T Consensus        61 ----ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~~-----  130 (433)
T KOG1354|consen   61 ----EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPEE-----  130 (433)
T ss_pred             ----ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-cccccccc-----
Confidence                67788999999999999999999999999999865566778889999999999997655333 11111110     


Q ss_pred             ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEe
Q 014005          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWN  245 (432)
Q Consensus       166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd  245 (432)
                        ...+.+..                 -....+-.........|.+.+..+|+..|+++.++.|++.+++++|=.|.+|+
T Consensus       131 --~~~~~~~~-----------------lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWn  191 (433)
T KOG1354|consen  131 --GPPGTITS-----------------LRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWN  191 (433)
T ss_pred             --CCCCccce-----------------eeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeecc
Confidence              00000000                 00111112222235678888888999999999999999999999999999999


Q ss_pred             CCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceee
Q 014005          246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (432)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  325 (432)
                      ++..++++.+++++|..+......|++..|||..+++|+..+..|+|++.|+|...+|++..+.|+. +++|..+++|++
T Consensus       192 lei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe-pedp~~rsffse  270 (433)
T KOG1354|consen  192 LEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE-PEDPSSRSFFSE  270 (433)
T ss_pred             ccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc-ccCCcchhhHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998899999 999999999999


Q ss_pred             eecceeEEEEcCCCCEEEEeeCCeEEEEec----CcceeEeecceeeeehhhhhcccccccccceeeE------------
Q 014005          326 IIASISDIKFANDGQHLLSRDYMNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVI------------  389 (432)
Q Consensus       326 ~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  389 (432)
                      ....|.++.|+++|+|+++.+.-+|++||+    +|+.++++|..        ++.++|++|+++|++            
T Consensus       271 iIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~--------lr~kLc~lYEnD~IfdKFec~~sg~~~  342 (433)
T KOG1354|consen  271 IISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEY--------LRSKLCSLYENDAIFDKFECSWSGNDS  342 (433)
T ss_pred             HhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHh--------HHHHHHHHhhccchhheeEEEEcCCcc
Confidence            999999999999999999999999999999    89999999986        699999999999987            


Q ss_pred             EEEeecccceeeeec
Q 014005          390 YIITTLYLINLSALS  404 (432)
Q Consensus       390 ~~~~g~~~~~i~~~~  404 (432)
                      ++.||+|.+.+++|+
T Consensus       343 ~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  343 YVMTGSYNNVFRVFN  357 (433)
T ss_pred             eEecccccceEEEec
Confidence            699999999999999

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-42  Score=290.83  Aligned_cols=291  Identities=16%  Similarity=0.200  Sum_probs=237.0

Q ss_pred             CCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005           24 NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (432)
Q Consensus        24 ~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~  103 (432)
                      .....-+|.++|.|++|+|+|..||+|+.|.++|+||+.+....                           .+.++|.  
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~---------------------------~t~KgH~--  157 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL---------------------------FTCKGHK--  157 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc---------------------------eeecCCc--
Confidence            34445689999999999999999999999999999999987643                           7899999  


Q ss_pred             ccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC---
Q 014005          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP---  180 (432)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---  180 (432)
                                ..|.+++|  +|||+.|++|+.||+|++||.++++.. -..+..|.           ..|.+++|.|   
T Consensus       158 ----------~WVlcvaw--sPDgk~iASG~~dg~I~lwdpktg~~~-g~~l~gH~-----------K~It~Lawep~hl  213 (480)
T KOG0271|consen  158 ----------NWVLCVAW--SPDGKKIASGSKDGSIRLWDPKTGQQI-GRALRGHK-----------KWITALAWEPLHL  213 (480)
T ss_pred             ----------cEEEEEEE--CCCcchhhccccCCeEEEecCCCCCcc-cccccCcc-----------cceeEEeeccccc
Confidence                      99999999  999999999999999999999888732 22344555           7888888854   


Q ss_pred             --CCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeE--
Q 014005          181 --SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI--  255 (432)
Q Consensus       181 --~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~--  255 (432)
                        ....+++++.  ||.++|||+.   .++|+..+ .+|+..|+|+.|--+| ++++| .|++|++|+.. .+.+.++  
T Consensus       214 ~p~~r~las~sk--Dg~vrIWd~~---~~~~~~~l-sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~-dG~~~r~lk  285 (480)
T KOG0271|consen  214 VPPCRRLASSSK--DGSVRIWDTK---LGTCVRTL-SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL-DGKLCRELK  285 (480)
T ss_pred             CCCccceecccC--CCCEEEEEcc---CceEEEEe-ccCccceEEEEEcCCc-eEEecCCCceEEEEEcc-chhHHHhhc
Confidence              5667788777  9999999999   78899999 8999999999998766 78888 99999999873 1111100  


Q ss_pred             -----------------------------------------------------------------eec----CC-CCcCC
Q 014005          256 -----------------------------------------------------------------VDM----KP-SNMDD  265 (432)
Q Consensus       256 -----------------------------------------------------------------~~~----~~-~~~~~  265 (432)
                                                                                       ++.    +| ..+.+
T Consensus       286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg  365 (480)
T KOG0271|consen  286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG  365 (480)
T ss_pred             ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc
Confidence                                                                             000    01 14578


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                      |..-|+.+.|+||+ +++|+++.|+.|++||.++|+.    +..|++|             -+.|..++|+.|.++|++|
T Consensus       366 Hq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk~----lasfRGH-------------v~~VYqvawsaDsRLlVS~  427 (480)
T KOG0271|consen  366 HQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGKF----LASFRGH-------------VAAVYQVAWSADSRLLVSG  427 (480)
T ss_pred             hhhheeeEEECCCc-cEEEEeecccceeeeeCCCcch----hhhhhhc-------------cceeEEEEeccCccEEEEc
Confidence            99999999999999 9999999999999999999997    7999998             8999999999999999998


Q ss_pred             eC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          346 DY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       346 ~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      +. .++++||+   +....+..|...          .++..+. .....+++|..|..+++|.
T Consensus       428 SkDsTLKvw~V~tkKl~~DLpGh~DE----------Vf~vDws-pDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  428 SKDSTLKVWDVRTKKLKQDLPGHADE----------VFAVDWS-PDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CCCceEEEEEeeeeeecccCCCCCce----------EEEEEec-CCCceeecCCCceEEEeec
Confidence            55 99999999   555666666542          2222222 2334588999999999985

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.6e-43  Score=298.74  Aligned_cols=283  Identities=16%  Similarity=0.231  Sum_probs=244.1

Q ss_pred             ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      ..+..+.+|..+.|+++++.||||+.+|.+++|+..+..                           .+.+|.||.     
T Consensus       170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~---------------------------~~~~l~gH~-----  217 (459)
T KOG0272|consen  170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN---------------------------LLQTLRGHT-----  217 (459)
T ss_pred             hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc---------------------------eeEEEeccc-----
Confidence            345567799999999999999999999999999998865                           347999999     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                             ..|.++.|+|-.++..++||+.||++++|++.+..  .+..+.+|.           ..|..++|+|+|+++.
T Consensus       218 -------~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~--~l~~l~gH~-----------~RVs~VafHPsG~~L~  277 (459)
T KOG0272|consen  218 -------SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET--PLQDLEGHL-----------ARVSRVAFHPSGKFLG  277 (459)
T ss_pred             -------cceeeEEEccCCCccceeeeccCCceeeeccCCCc--chhhhhcch-----------hhheeeeecCCCceee
Confidence                   99999999542236689999999999999998764  555566666           7899999999999999


Q ss_pred             cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      ++++  |.+-++||++   +...+... .+|...|.+++|+|||..+++| -|..-++||++ ++.++..+       .+
T Consensus       278 Tasf--D~tWRlWD~~---tk~ElL~Q-EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR-tgr~im~L-------~g  343 (459)
T KOG0272|consen  278 TASF--DSTWRLWDLE---TKSELLLQ-EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR-TGRCIMFL-------AG  343 (459)
T ss_pred             eccc--ccchhhcccc---cchhhHhh-cccccccceeEecCCCceeeccCccchhheeecc-cCcEEEEe-------cc
Confidence            9999  9999999998   44444444 7999999999999999999999 99999999999 78888877       89


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC-CCCEEEE
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLS  344 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~s  344 (432)
                      |...|.++.|+|+| ..||+|+.|++++|||++..+.    +.++.+|             .+-|+.++|+| .|.+|+|
T Consensus       344 H~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~----ly~ipAH-------------~nlVS~Vk~~p~~g~fL~T  405 (459)
T KOG0272|consen  344 HIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSE----LYTIPAH-------------SNLVSQVKYSPQEGYFLVT  405 (459)
T ss_pred             cccceeeEeECCCc-eEEeecCCCCcEEEeeeccccc----ceecccc-------------cchhhheEecccCCeEEEE
Confidence            99999999999999 9999999999999999998776    6888887             88999999999 6899999


Q ss_pred             eeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          345 RDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       345 ~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      +++ ++++||..   .+++++..|+.           ++..+-......+++|+++|.+|++|.
T Consensus       406 asyD~t~kiWs~~~~~~~ksLaGHe~-----------kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  406 ASYDNTVKIWSTRTWSPLKSLAGHEG-----------KVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cccCcceeeecCCCcccchhhcCCcc-----------ceEEEEeccCCceEEEeccCceeeecc
Confidence            866 99999999   89999999986           222222222334689999999999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=7.5e-41  Score=284.62  Aligned_cols=258  Identities=15%  Similarity=0.237  Sum_probs=227.3

Q ss_pred             cccchhhhhhhhcCCCCCccccCCCcEEEEEEcCC--CCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccc
Q 014005            9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST   86 (432)
Q Consensus         9 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~--g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (432)
                      .....|.-.++   ....+...|++.|.++.|+|.  +..||||+.||++++|++++...                    
T Consensus       197 G~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~--------------------  253 (459)
T KOG0272|consen  197 GLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP--------------------  253 (459)
T ss_pred             CceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc--------------------
Confidence            34456666665   224455689999999999997  56899999999999999988654                    


Q ss_pred             ccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccc
Q 014005           87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT  166 (432)
Q Consensus        87 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  166 (432)
                             +..+.+|.            ..|..++|  +|+|++|+|++.|.+-++||+.++...  .-..+|.       
T Consensus       254 -------l~~l~gH~------------~RVs~Vaf--HPsG~~L~TasfD~tWRlWD~~tk~El--L~QEGHs-------  303 (459)
T KOG0272|consen  254 -------LQDLEGHL------------ARVSRVAF--HPSGKFLGTASFDSTWRLWDLETKSEL--LLQEGHS-------  303 (459)
T ss_pred             -------hhhhhcch------------hhheeeee--cCCCceeeecccccchhhcccccchhh--Hhhcccc-------
Confidence                   37899999            99999999  899999999999999999999988722  2233444       


Q ss_pred             cccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEe
Q 014005          167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN  245 (432)
Q Consensus       167 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd  245 (432)
                          ..|.+++|.++|..+.+|+.  |..-+|||++   +++|+..+ .+|...|.+++|+|+|..+|+| .|++++|||
T Consensus       304 ----~~v~~iaf~~DGSL~~tGGl--D~~~RvWDlR---tgr~im~L-~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWD  373 (459)
T KOG0272|consen  304 ----KGVFSIAFQPDGSLAATGGL--DSLGRVWDLR---TGRCIMFL-AGHIKEILSVAFSPNGYHLATGSSDNTCKVWD  373 (459)
T ss_pred             ----cccceeEecCCCceeeccCc--cchhheeecc---cCcEEEEe-cccccceeeEeECCCceEEeecCCCCcEEEee
Confidence                78999999999999999999  9999999999   99999999 8999999999999999999999 999999999


Q ss_pred             CCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceee
Q 014005          246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (432)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  325 (432)
                      ++ ....+.++       .+|.+-|+.++|+|...++|++++.|++++||..++...    ++.+.+|            
T Consensus       374 LR-~r~~ly~i-------pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~----~ksLaGH------------  429 (459)
T KOG0272|consen  374 LR-MRSELYTI-------PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP----LKSLAGH------------  429 (459)
T ss_pred             ec-ccccceec-------ccccchhhheEecccCCeEEEEcccCcceeeecCCCccc----chhhcCC------------
Confidence            99 56666655       999999999999995559999999999999999999887    7999998            


Q ss_pred             eecceeEEEEcCCCCEEEEeeC-CeEEEEe
Q 014005          326 IIASISDIKFANDGQHLLSRDY-MNLKVFR  354 (432)
Q Consensus       326 ~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd  354 (432)
                       .+.|.++..++||.++++++. +++++|.
T Consensus       430 -e~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  430 -EGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             -ccceEEEEeccCCceEEEeccCceeeecc
Confidence             899999999999999999754 9999995

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-40  Score=271.07  Aligned_cols=357  Identities=44%  Similarity=0.660  Sum_probs=288.1

Q ss_pred             chhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCc
Q 014005           12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY   91 (432)
Q Consensus        12 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   91 (432)
                      -.|+|+||||++.+.......+.|+++.|...|.||++|...|.|.+|.-+...                      +-++
T Consensus         6 ~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~----------------------~cey   63 (460)
T COG5170           6 EILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSY----------------------GCEY   63 (460)
T ss_pred             hhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeeccccc----------------------ccch
Confidence            479999999999999999999999999999999999999999999999876643                      2268


Q ss_pred             ceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccc
Q 014005           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  171 (432)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (432)
                      ++.+.|++|+++|||+++++++..|..|.|+-...-..++..+.|++|++|.+....++.+...+....+    ..+..+
T Consensus        64 kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~----~~~~~g  139 (460)
T COG5170          64 KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSF----HSPMGG  139 (460)
T ss_pred             hhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccccc----ccccCC
Confidence            8889999999999999999999999999997433334678888999999999987765554443322100    000111


Q ss_pred             ccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCc
Q 014005          172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ  251 (432)
Q Consensus       172 ~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~  251 (432)
                      ++..    +..-.++-.+. -+..|         ...+.+.+...|...|+++.++.|.+.+++++|=.|.+|+++....
T Consensus       140 ~~~s----~~~l~lprls~-hd~ii---------aa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~  205 (460)
T COG5170         140 PLTS----TKELLLPRLSE-HDEII---------AAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDG  205 (460)
T ss_pred             CcCC----HHHhhcccccc-cceEE---------EeccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCC
Confidence            1111    11101111000 01111         2334445547899999999999999999999999999999999999


Q ss_pred             eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeeccee
Q 014005          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (432)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~  331 (432)
                      ++.+++++|..+......|++..|+|..++++...+..|.|++-|+|+..+|....+.++. ..++....+|.+....|.
T Consensus       206 sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~-~~D~v~~~ff~eivsSIS  284 (460)
T COG5170         206 SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFEEIVSSIS  284 (460)
T ss_pred             ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh-ccCcccchhHHHHhhhhc
Confidence            9999999999999999999999999998899999999999999999998888877777777 777888889999999999


Q ss_pred             EEEEcCCCCEEEEeeCCeEEEEec----CcceeEeecceeeeehhhhhcccccccccceeeE------------EEEeec
Q 014005          332 DIKFANDGQHLLSRDYMNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVI------------YIITTL  395 (432)
Q Consensus       332 ~~~~s~dg~~l~s~~~~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~g~  395 (432)
                      ++.|+++|+|+++.+.-+++|||+    .|++++..|..        ....+++.|++++++            .+.+|+
T Consensus       285 D~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~--------l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs  356 (460)
T COG5170         285 DFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCD--------LMDELNDVYENDAIFDKFEISFSGDDKHVLSGS  356 (460)
T ss_pred             ceEEcCCCcEEEEeccceEEEEecccccCCceeechHHH--------HHHHHHhhhhccceeeeEEEEecCCcccccccc
Confidence            999999999999999999999999    89999999975        578899999999887            489999


Q ss_pred             ccceeeeecc-------CCeeeecCCCce
Q 014005          396 YLINLSALSA-------GMDSILQPDPIA  417 (432)
Q Consensus       396 ~~~~i~~~~~-------~~~~~~~~~~~~  417 (432)
                      |.+++.+|+.       ..+++.++|+.+
T Consensus       357 y~NNfgiyp~~ssg~~D~g~vv~~ad~~a  385 (460)
T COG5170         357 YSNNFGIYPTDSSGFKDVGHVVNLADGSA  385 (460)
T ss_pred             cccceeeeccccCCCCcceEEEecccCCc
Confidence            9999999991       156666666544

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-39  Score=271.79  Aligned_cols=295  Identities=16%  Similarity=0.225  Sum_probs=230.1

Q ss_pred             cchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccc
Q 014005            3 LNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMD   82 (432)
Q Consensus         3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   82 (432)
                      +.+..+...+.|++..   +.+....-.|...|.|++|+|||+.||+|+.||+|++||..+++..      .+.+.+|..
T Consensus       131 ~tGsGD~TvR~WD~~T---eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~------g~~l~gH~K  201 (480)
T KOG0271|consen  131 VTGSGDTTVRLWDLDT---ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI------GRALRGHKK  201 (480)
T ss_pred             EecCCCceEEeeccCC---CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc------cccccCccc
Confidence            3445667778888773   2334455689999999999999999999999999999999988754      566777777


Q ss_pred             cc--ccccC-------------------------CcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeC
Q 014005           83 FT--STSHP-------------------------EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN  135 (432)
Q Consensus        83 ~~--~~~~p-------------------------~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~  135 (432)
                      ++  +++.|                         ...++..+.||+            .+|+|+.|  --+| ++++|+.
T Consensus       202 ~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT------------~~VTCvrw--GG~g-liySgS~  266 (480)
T KOG0271|consen  202 WITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT------------ASVTCVRW--GGEG-LIYSGSQ  266 (480)
T ss_pred             ceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc------------cceEEEEE--cCCc-eEEecCC
Confidence            77  55555                         234667788999            99999999  4444 9999999


Q ss_pred             CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-------------------------ceeccee
Q 014005          136 DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-------------------------HGYHLEW  190 (432)
Q Consensus       136 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------------------~~~~~~~  190 (432)
                      |++|++|+...|.+.  ..+.+|..-........+...+.-+|.+.+.                         .+++|+.
T Consensus       267 DrtIkvw~a~dG~~~--r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD  344 (480)
T KOG0271|consen  267 DRTIKVWRALDGKLC--RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD  344 (480)
T ss_pred             CceEEEEEccchhHH--HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence            999999999887632  2233333100000000001111222333333                         3777777


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                        |.++.+|+...  ..+++..+ .+|..-|+.+.|+||++++|++ -|..|++||.+ +++.+..+       .+|-+.
T Consensus       345 --d~tlflW~p~~--~kkpi~rm-tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~-tGk~lasf-------RGHv~~  411 (480)
T KOG0271|consen  345 --DFTLFLWNPFK--SKKPITRM-TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGR-TGKFLASF-------RGHVAA  411 (480)
T ss_pred             --CceEEEecccc--cccchhhh-hchhhheeeEEECCCccEEEEeecccceeeeeCC-Ccchhhhh-------hhccce
Confidence              89999999764  44566666 7999999999999999999999 99999999999 78877765       999999


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCC
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYM  348 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~  348 (432)
                      |..++|+.|. ++|++|+.|.++++||+++.++    ...+.+|             ...|.++.|+|||..+++| .|.
T Consensus       412 VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkKl----~~DLpGh-------------~DEVf~vDwspDG~rV~sggkdk  473 (480)
T KOG0271|consen  412 VYQVAWSADS-RLLVSGSKDSTLKVWDVRTKKL----KQDLPGH-------------ADEVFAVDWSPDGQRVASGGKDK  473 (480)
T ss_pred             eEEEEeccCc-cEEEEcCCCceEEEEEeeeeee----cccCCCC-------------CceEEEEEecCCCceeecCCCce
Confidence            9999999998 9999999999999999999877    5778887             8999999999999999997 559


Q ss_pred             eEEEEe
Q 014005          349 NLKVFR  354 (432)
Q Consensus       349 ~i~iwd  354 (432)
                      .+++|.
T Consensus       474 v~~lw~  479 (480)
T KOG0271|consen  474 VLRLWR  479 (480)
T ss_pred             EEEeec
Confidence            999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.4e-37  Score=251.53  Aligned_cols=283  Identities=18%  Similarity=0.263  Sum_probs=236.8

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      +-.|.+.|.++.|++|.++|++++.||.+.|||.-+....                           .-+.-..      
T Consensus        51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~---------------------------haipl~s------   97 (343)
T KOG0286|consen   51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV---------------------------HAIPLPS------   97 (343)
T ss_pred             ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce---------------------------eEEecCc------
Confidence            3478999999999999999999999999999997665432                           2233333      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc----ceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ----KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  183 (432)
                            ..|...+|  +|.|+++|.|+.|+...||++.+.    .......+..|.           +.+.++.|-+ ..
T Consensus        98 ------~WVMtCA~--sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt-----------gylScC~f~d-D~  157 (343)
T KOG0286|consen   98 ------SWVMTCAY--SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT-----------GYLSCCRFLD-DN  157 (343)
T ss_pred             ------eeEEEEEE--CCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc-----------ceeEEEEEcC-CC
Confidence                  78999999  899999999999999999999854    234444566666           7888888877 56


Q ss_pred             ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC
Q 014005          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~  261 (432)
                      .+++++.  |.+..+||++   +++..+.| .+|.+.|.+++++| +++.+++| -|+..++||++ .+.+.+.|     
T Consensus       158 ~ilT~SG--D~TCalWDie---~g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R-~~~c~qtF-----  225 (343)
T KOG0286|consen  158 HILTGSG--DMTCALWDIE---TGQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR-SGQCVQTF-----  225 (343)
T ss_pred             ceEecCC--CceEEEEEcc---cceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeecc-CcceeEee-----
Confidence            6777776  9999999999   88999999 89999999999999 99999999 99999999999 77888877     


Q ss_pred             CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (432)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~  341 (432)
                        .+|.+.|++++|.|+| .-|++|+.|++.++||+|..+.    +..++. ..          ...+|++++||-.|++
T Consensus       226 --~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~----~a~ys~-~~----------~~~gitSv~FS~SGRl  287 (343)
T KOG0286|consen  226 --EGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQE----LAVYSH-DS----------IICGITSVAFSKSGRL  287 (343)
T ss_pred             --cccccccceEEEccCC-CeeeecCCCceeEEEeecCCcE----Eeeecc-Cc----------ccCCceeEEEcccccE
Confidence              9999999999999999 9999999999999999998765    455553 11          2568999999999999


Q ss_pred             EEEe-eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          342 LLSR-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       342 l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      |.+| +|.++.+||.   +.+..+..|+.           ++..+.......-+.|||+|..++||.
T Consensus       288 Lfagy~d~~c~vWDtlk~e~vg~L~GHeN-----------RvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  288 LFAGYDDFTCNVWDTLKGERVGVLAGHEN-----------RVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEeeecCCceeEeeccccceEEEeeccCC-----------eeEEEEECCCCcEEEecchhHheeecC
Confidence            9997 6699999999   66677777765           444433444455699999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-36  Score=244.19  Aligned_cols=292  Identities=15%  Similarity=0.144  Sum_probs=232.5

Q ss_pred             cccCCCcEEEEEEcCC-CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~-g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      ...|++.|+.++..+. -+.|.+++.|.++.+|++......                      .....+.+.||+     
T Consensus        11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----------------------~G~~~r~~~GHs-----   63 (315)
T KOG0279|consen   11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----------------------YGVPVRRLTGHS-----   63 (315)
T ss_pred             ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----------------------cCceeeeeeccc-----
Confidence            4579999999999987 467899999999999999875322                      234567899999     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                             ..|..+..  ++||+++++++.|+++++||+.+++  ....+.+|.           ..|.+++++++...++
T Consensus        64 -------H~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~--~t~~f~GH~-----------~dVlsva~s~dn~qiv  121 (315)
T KOG0279|consen   64 -------HFVSDVVL--SSDGNFALSASWDGTLRLWDLATGE--STRRFVGHT-----------KDVLSVAFSTDNRQIV  121 (315)
T ss_pred             -------eEecceEE--ccCCceEEeccccceEEEEEecCCc--EEEEEEecC-----------CceEEEEecCCCceee
Confidence                   99999999  8999999999999999999999986  344455555           7899999999999999


Q ss_pred             cceeeccceEEEEeecccccceeeEEeecC-CCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (432)
                      +|+.  |.++++|+..    +.|..+.... +.+.|+|++|+|+  ..+++++ .|+++++||++ +-+....       
T Consensus       122 SGSr--DkTiklwnt~----g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~-~~~l~~~-------  187 (315)
T KOG0279|consen  122 SGSR--DKTIKLWNTL----GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR-NCQLRTT-------  187 (315)
T ss_pred             cCCC--cceeeeeeec----ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC-Ccchhhc-------
Confidence            9999  9999999985    4565555222 3789999999998  6788888 99999999999 4444443       


Q ss_pred             cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (432)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  342 (432)
                      +.+|+..++.+++|||| .++++|+.||.+.+||++.++.    +..+..              ...|.+++|+|+..+|
T Consensus       188 ~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~----lysl~a--------------~~~v~sl~fspnrywL  248 (315)
T KOG0279|consen  188 FIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKN----LYSLEA--------------FDIVNSLCFSPNRYWL  248 (315)
T ss_pred             cccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCce----eEeccC--------------CCeEeeEEecCCceeE
Confidence            48999999999999999 9999999999999999998876    466665              6899999999999888


Q ss_pred             EEeeCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccce-eeEEEEeecccceeeeec
Q 014005          343 LSRDYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALS-CVIYIITTLYLINLSALS  404 (432)
Q Consensus       343 ~s~~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~i~~~~  404 (432)
                      +.+.+..|+|||+   ..+.+++......   ..-...+.|.....+ ....+..|-.|+.|.+|.
T Consensus       249 ~~at~~sIkIwdl~~~~~v~~l~~d~~g~---s~~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  249 CAATATSIKIWDLESKAVVEELKLDGIGP---SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             eeccCCceEEEeccchhhhhhcccccccc---ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence            8887778999999   5666665543211   000112333322221 234577788888888886

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7.5e-37  Score=243.16  Aligned_cols=281  Identities=16%  Similarity=0.206  Sum_probs=226.6

Q ss_pred             cchhhccccchhhhhhhhcCCCCCccccCCC-cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccc
Q 014005            3 LNREEASASLEWKCSQAFGERNPDEELQDVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQM   81 (432)
Q Consensus         3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~-~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   81 (432)
                      ++++++-..+.|....  |  .-...++|.+ .|+.+...|++++||+|+. ..||+||+++.+..              
T Consensus        14 vsA~YDhTIRfWqa~t--G--~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~--------------   74 (311)
T KOG0315|consen   14 VSAGYDHTIRFWQALT--G--ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN--------------   74 (311)
T ss_pred             EeccCcceeeeeehhc--C--eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC--------------
Confidence            3445555666665442  1  1123567754 7999999999999999887 48999999987632              


Q ss_pred             cccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcc
Q 014005           82 DFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFV  161 (432)
Q Consensus        82 ~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  161 (432)
                                 ++.+|.+|+            +.|..+.|  ..+|+++++|+.||+++|||++...+.+...+.     
T Consensus        75 -----------Pv~t~e~h~------------kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-----  124 (311)
T KOG0315|consen   75 -----------PVATFEGHT------------KNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-----  124 (311)
T ss_pred             -----------ceeEEeccC------------CceEEEEE--eecCeEEEecCCCceEEEEeccCcccchhccCC-----
Confidence                       668999999            99999999  889999999999999999999986655554443     


Q ss_pred             ccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe
Q 014005          162 SSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR  240 (432)
Q Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~  240 (432)
                               .+|.++..+|+...++++..  +|.|++||+.   ...|...+.......|.++.+.|+|.+++.+ ..|+
T Consensus       125 ---------spVn~vvlhpnQteLis~dq--sg~irvWDl~---~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~  190 (311)
T KOG0315|consen  125 ---------SPVNTVVLHPNQTELISGDQ--SGNIRVWDLG---ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN  190 (311)
T ss_pred             ---------CCcceEEecCCcceEEeecC--CCcEEEEEcc---CCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc
Confidence                     68999999999999999999  9999999998   5556555545666789999999999999999 9999


Q ss_pred             EEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc
Q 014005          241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK  320 (432)
Q Consensus       241 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~  320 (432)
                      +++|++-. .+....+ .....++.|...+..+.+||++ ++||+++.|.+++||+..+. .  +....+++|       
T Consensus       191 cyvW~l~~-~~~~s~l-~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~-~--kle~~l~gh-------  257 (311)
T KOG0315|consen  191 CYVWRLLN-HQTASEL-EPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDF-F--KLELVLTGH-------  257 (311)
T ss_pred             EEEEEccC-CCccccc-eEhhheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCc-e--eeEEEeecC-------
Confidence            99999973 3322222 1123468999999999999999 99999999999999999875 1  125777886       


Q ss_pred             cceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec---CcceeEeecc
Q 014005          321 SFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY---EPVMTLSFCG  365 (432)
Q Consensus       321 ~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~~  365 (432)
                            ..++++.+||.||+||++| +|+.+++||+   +.++.+..|.
T Consensus       258 ------~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~  300 (311)
T KOG0315|consen  258 ------QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH  300 (311)
T ss_pred             ------CceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence                  8899999999999999997 5699999999   5556665553

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=8.2e-37  Score=254.87  Aligned_cols=303  Identities=14%  Similarity=0.204  Sum_probs=249.4

Q ss_pred             cchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCC
Q 014005           11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE   90 (432)
Q Consensus        11 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   90 (432)
                      ...||+.++..        .|.+.|.|+++.|.++++++|+.|++|+|||+.++++.                       
T Consensus       138 HapwKl~rVi~--------gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk-----------------------  186 (460)
T KOG0285|consen  138 HAPWKLYRVIS--------GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK-----------------------  186 (460)
T ss_pred             cCcceehhhhh--------hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE-----------------------
Confidence            34678887766        78999999999999999999999999999999998754                       


Q ss_pred             cceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccc
Q 014005           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (432)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (432)
                          .++.||.            ..|..+++  ++-..|+++++.|+.|+.||++..+  .+..+.+|-           
T Consensus       187 ----ltltGhi------------~~vr~vav--S~rHpYlFs~gedk~VKCwDLe~nk--vIR~YhGHl-----------  235 (460)
T KOG0285|consen  187 ----LTLTGHI------------ETVRGVAV--SKRHPYLFSAGEDKQVKCWDLEYNK--VIRHYHGHL-----------  235 (460)
T ss_pred             ----Eeecchh------------heeeeeee--cccCceEEEecCCCeeEEEechhhh--hHHHhcccc-----------
Confidence                7889999            99999999  8888999999999999999999877  444455555           


Q ss_pred             cccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCC
Q 014005          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  249 (432)
Q Consensus       171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~  249 (432)
                      +.|.+++.+|....+++++.  |..+++||++   +...+..+ .+|...|.++.+.|....+++| .|++|++||++ .
T Consensus       236 S~V~~L~lhPTldvl~t~gr--Dst~RvWDiR---tr~~V~~l-~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~-a  308 (460)
T KOG0285|consen  236 SGVYCLDLHPTLDVLVTGGR--DSTIRVWDIR---TRASVHVL-SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLR-A  308 (460)
T ss_pred             ceeEEEeccccceeEEecCC--cceEEEeeec---ccceEEEe-cCCCCcceeEEeecCCCceEEecCCceEEEeeec-c
Confidence            88999999999999999999  9999999999   77888888 8999999999999988899999 99999999999 6


Q ss_pred             CceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecc
Q 014005          250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (432)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~  329 (432)
                      ++...++       ..|...+++++.+|.. ..||+++.| .|+-|++..|..    +..+.+|             ..-
T Consensus       309 gkt~~tl-------t~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~f----~~nlsgh-------------~~i  362 (460)
T KOG0285|consen  309 GKTMITL-------THHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGEF----LQNLSGH-------------NAI  362 (460)
T ss_pred             CceeEee-------ecccceeeEEecCCch-hhhhccCCc-cceeccCCccch----hhccccc-------------cce
Confidence            6666655       7889999999999998 999999888 699999998887    4678887             788


Q ss_pred             eeEEEEcCCCCEEEEeeC-CeEEEEecC------cceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeee
Q 014005          330 ISDIKFANDGQHLLSRDY-MNLKVFRYE------PVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSA  402 (432)
Q Consensus       330 v~~~~~s~dg~~l~s~~~-~~i~iwd~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~  402 (432)
                      |+.++...|| ++++|+| |.+.+||.+      ..+++..++.      ......+...++.....-++||..|.+|++
T Consensus       363 intl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGS------l~sEagI~as~fDktg~rlit~eadKtIk~  435 (460)
T KOG0285|consen  363 INTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGS------LESEAGIFASCFDKTGSRLITGEADKTIKM  435 (460)
T ss_pred             eeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCc------cccccceeEEeecccCceEEeccCCcceEE
Confidence            9999999888 5556655 999999992      2222222221      111112223333334456999999999999


Q ss_pred             eccCCeeeecCCC
Q 014005          403 LSAGMDSILQPDP  415 (432)
Q Consensus       403 ~~~~~~~~~~~~~  415 (432)
                      |....+...+.+|
T Consensus       436 ~keDe~aT~EthP  448 (460)
T KOG0285|consen  436 YKEDEHATEETHP  448 (460)
T ss_pred             EecccccCcccCC
Confidence            9977666666655

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-36  Score=241.83  Aligned_cols=274  Identities=16%  Similarity=0.266  Sum_probs=212.5

Q ss_pred             cchhhccccchhhhhhh---hcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhc
Q 014005            3 LNREEASASLEWKCSQA---FGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEK   79 (432)
Q Consensus         3 ~~~~~~~~~~~w~~~~~---~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~   79 (432)
                      +++.-+-....|++...   +| ......-+|+..|..+..+++|++.++++.|+++|+||+.+++              
T Consensus        32 ~sasrDk~ii~W~L~~dd~~~G-~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~--------------   96 (315)
T KOG0279|consen   32 VSASRDKTIIVWKLTSDDIKYG-VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE--------------   96 (315)
T ss_pred             EEcccceEEEEEEeccCccccC-ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCc--------------
Confidence            34444455566777643   22 1111223689999999999999999999999999999999975              


Q ss_pred             cccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCC
Q 014005           80 QMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP  159 (432)
Q Consensus        80 ~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  159 (432)
                                   ..+.|.||.            ..|.+++|  ++|.+++++|+.|++|++|+..+.....+.... +.
T Consensus        97 -------------~t~~f~GH~------------~dVlsva~--s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~-~~  148 (315)
T KOG0279|consen   97 -------------STRRFVGHT------------KDVLSVAF--STDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDS-HR  148 (315)
T ss_pred             -------------EEEEEEecC------------CceEEEEe--cCCCceeecCCCcceeeeeeecccEEEEEecCC-Cc
Confidence                         337899999            99999999  899999999999999999999876533332221 13


Q ss_pred             ccccccccccccccccccCCCC--CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-
Q 014005          160 FVSSENTLLAEKNFMNEHNPPS--FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-  236 (432)
Q Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-  236 (432)
                                 +.|.++.|+|.  ...++.++.  |++|++||++   ..+....+ .+|.+.++.++++|||..+++| 
T Consensus       149 -----------~WVscvrfsP~~~~p~Ivs~s~--DktvKvWnl~---~~~l~~~~-~gh~~~v~t~~vSpDGslcasGg  211 (315)
T KOG0279|consen  149 -----------EWVSCVRFSPNESNPIIVSASW--DKTVKVWNLR---NCQLRTTF-IGHSGYVNTVTVSPDGSLCASGG  211 (315)
T ss_pred             -----------CcEEEEEEcCCCCCcEEEEccC--CceEEEEccC---Ccchhhcc-ccccccEEEEEECCCCCEEecCC
Confidence                       78999999999  677777777  9999999999   66777777 8999999999999999999999 


Q ss_pred             cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccc
Q 014005          237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES  316 (432)
Q Consensus       237 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~  316 (432)
                      .||.+.+||++ .++.+..        .+|...|++++|+|+. ..|+ +..+..|+|||+.++.........+.+ +  
T Consensus       212 kdg~~~LwdL~-~~k~lys--------l~a~~~v~sl~fspnr-ywL~-~at~~sIkIwdl~~~~~v~~l~~d~~g-~--  277 (315)
T KOG0279|consen  212 KDGEAMLWDLN-EGKNLYS--------LEAFDIVNSLCFSPNR-YWLC-AATATSIKIWDLESKAVVEELKLDGIG-P--  277 (315)
T ss_pred             CCceEEEEEcc-CCceeEe--------ccCCCeEeeEEecCCc-eeEe-eccCCceEEEeccchhhhhhccccccc-c--
Confidence            99999999999 6666665        4778889999999986 5554 445667999999987753322111222 1  


Q ss_pred             cCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          317 HGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       317 ~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                       ..    ........+++|++||..|.+| .++.|++|.+
T Consensus       278 -s~----~~~~~~clslaws~dG~tLf~g~td~~irv~qv  312 (315)
T KOG0279|consen  278 -SS----KAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV  312 (315)
T ss_pred             -cc----ccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence             00    0012356789999999999999 6699999986

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.2e-36  Score=251.91  Aligned_cols=281  Identities=16%  Similarity=0.228  Sum_probs=239.2

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      .+|..+|+.+-|+|+-...++++.|++|++||..+++.                           ...++||+       
T Consensus       105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---------------------------e~~LrGHt-------  150 (406)
T KOG0295|consen  105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---------------------------ERSLRGHT-------  150 (406)
T ss_pred             hccccceeeeeeccCceEEEEecCCceEEEEEccchhh---------------------------hhhhhccc-------
Confidence            46788999999999999999999999999999999874                           37899999       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           +.|.+|+|  +..|+++++++.|=.+++||..+. ...+..+..|.           ..|.++.|-|.+.++.++
T Consensus       151 -----~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~~gh~-----------h~vS~V~f~P~gd~ilS~  211 (406)
T KOG0295|consen  151 -----DSVFDISF--DASGKYLATCSSDLSAKLWDFDTF-FRCIKSLIGHE-----------HGVSSVFFLPLGDHILSC  211 (406)
T ss_pred             -----cceeEEEE--ecCccEEEecCCccchhheeHHHH-HHHHHHhcCcc-----------cceeeEEEEecCCeeeec
Confidence                 88999999  889999999999999999999764 22333334444           678889999999999999


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      +.  |.+++.|++.   ++-|+.+| .+|...+..++.+.||.+++++ .|.++++|-+. ++++...+       ..|.
T Consensus       212 sr--D~tik~We~~---tg~cv~t~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~-t~~~k~~l-------R~hE  277 (406)
T KOG0295|consen  212 SR--DNTIKAWECD---TGYCVKTF-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA-TKQCKAEL-------REHE  277 (406)
T ss_pred             cc--ccceeEEecc---cceeEEec-cCchHhEEEEEecCCeeEEEecCCCceEEEEEec-cchhhhhh-------hccc
Confidence            99  9999999999   88999999 8999999999999999999999 99999999999 67666655       7888


Q ss_pred             cceEEEEEcCC--------------CCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEE
Q 014005          268 EVITSAEFHPI--------------YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  333 (432)
Q Consensus       268 ~~v~~~~~~p~--------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~  333 (432)
                      -+|-+++|-|.              +.+++++++.|++|++||+.++..    +.++.+|             .++|.++
T Consensus       278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c----L~tL~gh-------------dnwVr~~  340 (406)
T KOG0295|consen  278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC----LFTLVGH-------------DNWVRGV  340 (406)
T ss_pred             cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE----EEEEecc-------------cceeeee
Confidence            89999998763              126999999999999999999975    7899998             8999999


Q ss_pred             EEcCCCCEEEEe-eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          334 KFANDGQHLLSR-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       334 ~~s~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      +|+|.|+||+++ +|+++++||+   .+.+++..|+..+-..++           ....-+++||+-|-.+++|.
T Consensus       341 af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf-----------h~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  341 AFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF-----------HKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             EEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec-----------CCCCceEEeccccceeeeee
Confidence            999999999997 5599999999   677777777642211111           12223799999999999996

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.2e-36  Score=273.38  Aligned_cols=265  Identities=14%  Similarity=0.247  Sum_probs=222.8

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCcccc-chhhhc--cccccccccC-CcceeeeeecCCcccccc
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHIS-RSELEK--QMDFTSTSHP-EYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~p-~~~~~~~~~~h~~~~~~~  107 (432)
                      ...++|..|++++.+||.|-.|..|++|.+...+..+..... ...+..  .+-..-...+ +.....++-||+      
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~------  451 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS------  451 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC------
Confidence            457999999999999999999999999999865432211111 111110  0110101111 223335688999      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                            ++|...+|  +|+.++|++++.|+++++|.+.+....  ....+|.           .+|-++.|+|-|.++++
T Consensus       452 ------GPVyg~sF--sPd~rfLlScSED~svRLWsl~t~s~~--V~y~GH~-----------~PVwdV~F~P~GyYFat  510 (707)
T KOG0263|consen  452 ------GPVYGCSF--SPDRRFLLSCSEDSSVRLWSLDTWSCL--VIYKGHL-----------APVWDVQFAPRGYYFAT  510 (707)
T ss_pred             ------Cceeeeee--cccccceeeccCCcceeeeecccceeE--EEecCCC-----------cceeeEEecCCceEEEe
Confidence                  99999999  899999999999999999999987743  3344665           78999999999999999


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      ++.  |++.++|...   ...+.+.+ .+|-+.+.|+.|+|+..++++| .|.++++||+. ++..+++|       .+|
T Consensus       511 as~--D~tArLWs~d---~~~PlRif-aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~-~G~~VRiF-------~GH  576 (707)
T KOG0263|consen  511 ASH--DQTARLWSTD---HNKPLRIF-AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS-TGNSVRIF-------TGH  576 (707)
T ss_pred             cCC--Cceeeeeecc---cCCchhhh-cccccccceEEECCcccccccCCCCceEEEEEcC-CCcEEEEe-------cCC
Confidence            988  9999999998   67899999 8999999999999999999999 99999999999 78889988       999


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-
Q 014005          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-  345 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-  345 (432)
                      .++|.+++|+|+| ++|++|+.||.|.+||+.++++    +..+.+|             .+.|.++.||.||..||+| 
T Consensus       577 ~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~----v~~l~~H-------------t~ti~SlsFS~dg~vLasgg  638 (707)
T KOG0263|consen  577 KGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGSL----VKQLKGH-------------TGTIYSLSFSRDGNVLASGG  638 (707)
T ss_pred             CCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCcc----hhhhhcc-------------cCceeEEEEecCCCEEEecC
Confidence            9999999999999 9999999999999999999887    6888887             8999999999999999997 


Q ss_pred             eCCeEEEEec
Q 014005          346 DYMNLKVFRY  355 (432)
Q Consensus       346 ~~~~i~iwd~  355 (432)
                      .|++|++||+
T Consensus       639 ~DnsV~lWD~  648 (707)
T KOG0263|consen  639 ADNSVRLWDL  648 (707)
T ss_pred             CCCeEEEEEc
Confidence            5599999999

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=7.9e-35  Score=251.25  Aligned_cols=250  Identities=17%  Similarity=0.281  Sum_probs=210.9

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ....+..|++++|+.+|..||+|+.||.+|||+......                            .++..|.      
T Consensus       231 s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~----------------------------~tl~~Hk------  276 (524)
T KOG0273|consen  231 SVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI----------------------------STLGQHK------  276 (524)
T ss_pred             cCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhh----------------------------hhhhccC------
Confidence            344457899999999999999999999999999877543                            4788899      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                            ++|.++.|  +.+|.+|++++.|+++.+||..++..+....+..             .+-.++.|-.+..+...
T Consensus       277 ------gPI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s-------------~~~lDVdW~~~~~F~ts  335 (524)
T KOG0273|consen  277 ------GPIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS-------------APALDVDWQSNDEFATS  335 (524)
T ss_pred             ------CceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeecc-------------CCccceEEecCceEeec
Confidence                  99999999  8999999999999999999999988766554431             23355666665555544


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      +.   ++.++++.+.   ...++.++ .+|.+.|+++.|+|.+..|+++ +|++++||.+. ...+.+-+       ..|
T Consensus       336 ~t---d~~i~V~kv~---~~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~-~~~~~~~l-------~~H  400 (524)
T KOG0273|consen  336 ST---DGCIHVCKVG---EDRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG-QSNSVHDL-------QAH  400 (524)
T ss_pred             CC---CceEEEEEec---CCCcceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecC-CCcchhhh-------hhh
Confidence            43   8999999998   77888888 7899999999999999999999 99999999988 45566544       899


Q ss_pred             CcceEEEEEcCCCC--------cEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005          267 TEVITSAEFHPIYC--------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (432)
Q Consensus       267 ~~~v~~~~~~p~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d  338 (432)
                      +..|..+.|+|+|+        ..+++++.|++|++||+..+..    +..|..|             ..+|.+++|||+
T Consensus       401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~----i~~f~kH-------------~~pVysvafS~~  463 (524)
T KOG0273|consen  401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP----IHTLMKH-------------QEPVYSVAFSPN  463 (524)
T ss_pred             ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce----eEeeccC-------------CCceEEEEecCC
Confidence            99999999999763        5799999999999999999886    6888887             899999999999


Q ss_pred             CCEEEEeeC-CeEEEEec---CcceeEeec
Q 014005          339 GQHLLSRDY-MNLKVFRY---EPVMTLSFC  364 (432)
Q Consensus       339 g~~l~s~~~-~~i~iwd~---~~~~~~~~~  364 (432)
                      |+|+|+|+- |.|.+|++   +.++++...
T Consensus       464 g~ylAsGs~dg~V~iws~~~~~l~~s~~~~  493 (524)
T KOG0273|consen  464 GRYLASGSLDGCVHIWSTKTGKLVKSYQGT  493 (524)
T ss_pred             CcEEEecCCCCeeEeccccchheeEeecCC
Confidence            999999965 99999999   455555443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2e-34  Score=234.51  Aligned_cols=244  Identities=17%  Similarity=0.273  Sum_probs=214.6

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ...|..++|+|.|+++|+|+.|+...||++.+...-                     ...+..+++.+|+          
T Consensus        97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~---------------------g~~~v~r~l~gHt----------  145 (343)
T KOG0286|consen   97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE---------------------GNVRVSRELAGHT----------  145 (343)
T ss_pred             ceeEEEEEECCCCCeEEecCcCceeEEEeccccccc---------------------ccceeeeeecCcc----------
Confidence            568999999999999999999999999999865211                     0123446799999          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC-CCcceeccee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGYHLEW  190 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~  190 (432)
                        +.+.++.|  -+ ...|+|++.|.+..+||+++++  .+..+.+|.           +.|.+++++| +++.+++|+-
T Consensus       146 --gylScC~f--~d-D~~ilT~SGD~TCalWDie~g~--~~~~f~GH~-----------gDV~slsl~p~~~ntFvSg~c  207 (343)
T KOG0286|consen  146 --GYLSCCRF--LD-DNHILTGSGDMTCALWDIETGQ--QTQVFHGHT-----------GDVMSLSLSPSDGNTFVSGGC  207 (343)
T ss_pred             --ceeEEEEE--cC-CCceEecCCCceEEEEEcccce--EEEEecCCc-----------ccEEEEecCCCCCCeEEeccc
Confidence              99999999  34 5589999999999999999998  555667777           8999999999 8999999998


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                        |+..++||++   .+.|+++| .+|+..|++++|.|+|.-+++| +|+++++||++ .++.+.++.     ...-..+
T Consensus       208 --D~~aklWD~R---~~~c~qtF-~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR-aD~~~a~ys-----~~~~~~g  275 (343)
T KOG0286|consen  208 --DKSAKLWDVR---SGQCVQTF-EGHESDINSVRFFPSGDAFATGSDDATCRLYDLR-ADQELAVYS-----HDSIICG  275 (343)
T ss_pred             --ccceeeeecc---CcceeEee-cccccccceEEEccCCCeeeecCCCceeEEEeec-CCcEEeeec-----cCcccCC
Confidence              9999999999   88999999 8999999999999999999999 99999999999 777777772     2334567


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-C
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~  348 (432)
                      |++++||..| ++|++|..|.++.+||.-.++.    ...+.+|             .+.|+++..+|||.-+++|+- .
T Consensus       276 itSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~----vg~L~GH-------------eNRvScl~~s~DG~av~TgSWDs  337 (343)
T KOG0286|consen  276 ITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGER----VGVLAGH-------------ENRVSCLGVSPDGMAVATGSWDS  337 (343)
T ss_pred             ceeEEEcccc-cEEEeeecCCceeEeeccccce----EEEeecc-------------CCeeEEEEECCCCcEEEecchhH
Confidence            9999999999 9999999999999999988887    6888897             899999999999999999865 9


Q ss_pred             eEEEEe
Q 014005          349 NLKVFR  354 (432)
Q Consensus       349 ~i~iwd  354 (432)
                      +++||.
T Consensus       338 ~lriW~  343 (343)
T KOG0286|consen  338 TLRIWA  343 (343)
T ss_pred             heeecC
Confidence            999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.5e-34  Score=228.83  Aligned_cols=269  Identities=14%  Similarity=0.194  Sum_probs=218.2

Q ss_pred             CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEc
Q 014005           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  124 (432)
Q Consensus        45 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s  124 (432)
                      -+|++++.|.+||+|...++.                           |..+++-..            ..|+.+..  .
T Consensus        11 viLvsA~YDhTIRfWqa~tG~---------------------------C~rTiqh~d------------sqVNrLei--T   49 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGI---------------------------CSRTIQHPD------------SQVNRLEI--T   49 (311)
T ss_pred             eEEEeccCcceeeeeehhcCe---------------------------EEEEEecCc------------cceeeEEE--c
Confidence            479999999999999999876                           557777655            89999999  8


Q ss_pred             CCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeeccc
Q 014005          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  204 (432)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~  204 (432)
                      |+++.|++++. .+|++||+.++....+..+..+.           ..|..+.|..+++++++|+.  ||+++|||++  
T Consensus        50 pdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~-----------kNVtaVgF~~dgrWMyTgse--Dgt~kIWdlR--  113 (311)
T KOG0315|consen   50 PDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHT-----------KNVTAVGFQCDGRWMYTGSE--DGTVKIWDLR--  113 (311)
T ss_pred             CCcchhhhccC-CeeEEEEccCCCCCceeEEeccC-----------CceEEEEEeecCeEEEecCC--CceEEEEecc--
Confidence            99999998876 67999999998877777777777           89999999999999999999  9999999999  


Q ss_pred             ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEE
Q 014005          205 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  283 (432)
Q Consensus       205 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  283 (432)
                       ...|.+.+  .|...|+++..+|+...|++| .+|.|++||+. ...+...+      +......|.++...||| .+|
T Consensus       114 -~~~~qR~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~-~~~c~~~l------iPe~~~~i~sl~v~~dg-sml  182 (311)
T KOG0315|consen  114 -SLSCQRNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG-ENSCTHEL------IPEDDTSIQSLTVMPDG-SML  182 (311)
T ss_pred             -Ccccchhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEcc-CCcccccc------CCCCCcceeeEEEcCCC-cEE
Confidence             66777776  577999999999999999999 99999999999 56555543      24445679999999999 999


Q ss_pred             EEEeCCCeEEEEEccccccc--cccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec----C
Q 014005          284 AYSSSRGFVRLVDMRQSALC--DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY----E  356 (432)
Q Consensus       284 ~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~----~  356 (432)
                      +.+...|+.++|++-.....  ..++..++.|             ...+..+.+|||++|||++ +|.+++||+.    +
T Consensus       183 ~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah-------------~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k  249 (311)
T KOG0315|consen  183 AAANNKGNCYVWRLLNHQTASELEPVHKFQAH-------------NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK  249 (311)
T ss_pred             EEecCCccEEEEEccCCCccccceEhhheecc-------------cceEEEEEECCCCcEEEeecCCceEEEEecCCcee
Confidence            99999999999999864421  1123444554             8899999999999999997 5699999999    3


Q ss_pred             cceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          357 PVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      ....+..|..++|-..|           +...-|++||+.|+..++|+.
T Consensus       250 le~~l~gh~rWvWdc~F-----------S~dg~YlvTassd~~~rlW~~  287 (311)
T KOG0315|consen  250 LELVLTGHQRWVWDCAF-----------SADGEYLVTASSDHTARLWDL  287 (311)
T ss_pred             eEEEeecCCceEEeeee-----------ccCccEEEecCCCCceeeccc
Confidence            33344444433222111           112238999999999999993

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.8e-33  Score=227.97  Aligned_cols=262  Identities=14%  Similarity=0.192  Sum_probs=212.5

Q ss_pred             ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      ....|++.|+.+.|+|+|.+||+|+.|+.|.+|+.....                          +....+++|.     
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--------------------------eN~~~lkgHs-----   90 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--------------------------ENFWVLKGHS-----   90 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--------------------------cceeeecccc-----
Confidence            345789999999999999999999999999999976532                          2346788999     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce-
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG-  185 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-  185 (432)
                             +.|..+.|  ++|++.+++++.|++|+.||+++++  ....+..|.           .-+..+....-+..+ 
T Consensus        91 -------gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~--~~rk~k~h~-----------~~vNs~~p~rrg~~lv  148 (338)
T KOG0265|consen   91 -------GAVMELHG--MRDGSHILSCGTDKTVRGWDAETGK--RIRKHKGHT-----------SFVNSLDPSRRGPQLV  148 (338)
T ss_pred             -------ceeEeeee--ccCCCEEEEecCCceEEEEecccce--eeehhcccc-----------ceeeecCccccCCeEE
Confidence                   99999999  8999999999999999999999998  455566665           566666655445444 


Q ss_pred             ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (432)
                      .+++.  |+++++||++   ...+++++  .....++++.|..++..+.+| -|+.|++||++ .+....++       .
T Consensus       149 ~Sgsd--D~t~kl~D~R---~k~~~~t~--~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r-~~d~~~~l-------s  213 (338)
T KOG0265|consen  149 CSGSD--DGTLKLWDIR---KKEAIKTF--ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLR-KNDGLYTL-------S  213 (338)
T ss_pred             EecCC--CceEEEEeec---ccchhhcc--ccceeEEEEEecccccceeeccccCceeeeccc-cCcceEEe-------e
Confidence            44555  9999999999   66777765  456789999999999999999 99999999999 56677766       9


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      +|...|+.+..+|+| ..+.+-+.|.++++||++-.....+.++.+++|.-.         .......++|+|+++++.+
T Consensus       214 Gh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn---------feknlL~cswsp~~~~i~a  283 (338)
T KOG0265|consen  214 GHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN---------FEKNLLKCSWSPNGTKITA  283 (338)
T ss_pred             cccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhh---------hhhhcceeeccCCCCcccc
Confidence            999999999999999 999999999999999999644433336788875100         1234567899999999999


Q ss_pred             e-eCCeEEEEec---CcceeEeecce
Q 014005          345 R-DYMNLKVFRY---EPVMTLSFCGI  366 (432)
Q Consensus       345 ~-~~~~i~iwd~---~~~~~~~~~~~  366 (432)
                      | .|..+++||.   ..+..+..|..
T Consensus       284 gs~dr~vyvwd~~~r~~lyklpGh~g  309 (338)
T KOG0265|consen  284 GSADRFVYVWDTTSRRILYKLPGHYG  309 (338)
T ss_pred             ccccceEEEeecccccEEEEcCCcce
Confidence            8 5599999999   55556666653

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.1e-34  Score=243.32  Aligned_cols=278  Identities=16%  Similarity=0.245  Sum_probs=230.2

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      .-.|..|.|.|+|+.|++|+..|.+.+|+...-                           .+...++.|.          
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---------------------------nFEtilQaHD----------  138 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---------------------------NFETILQAHD----------  138 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCcee---------------------------eHHHHhhhhc----------
Confidence            457999999999999999999999999997442                           2234578898          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                        ..|.++.|  ++++.++++|+.+|.|++|+......+.+..+.             ...|++++|+|....+++++. 
T Consensus       139 --s~Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh-------------~eaIRdlafSpnDskF~t~Sd-  200 (464)
T KOG0284|consen  139 --SPVRTMKW--SHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHH-------------AEAIRDLAFSPNDSKFLTCSD-  200 (464)
T ss_pred             --ccceeEEE--ccCCCEEEEcCCCceEEecccchhhhHHhhHhh-------------hhhhheeccCCCCceeEEecC-
Confidence              99999999  899999999999999999998866544433322             268999999999988999888 


Q ss_pred             ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                       ||.++|||..   ..+..+.+ .+|.-.|.+++|+|....+++| .|..|++||.+ ++.|+.++       .+|...|
T Consensus       201 -Dg~ikiWdf~---~~kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr-Sg~cl~tl-------h~HKntV  267 (464)
T KOG0284|consen  201 -DGTIKIWDFR---MPKEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR-SGSCLATL-------HGHKNTV  267 (464)
T ss_pred             -CCeEEEEecc---CCchhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCC-Ccchhhhh-------hhccceE
Confidence             9999999998   55666666 8999999999999999999999 99999999999 78888765       8999999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC-EEEEe-eCC
Q 014005          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR-DYM  348 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~s~-~~~  348 (432)
                      ..+.|+|++ ++|+++|.|..++++|+|+.+.    +..+++|             ...|+++.|+|-.. +|++| .||
T Consensus       268 l~~~f~~n~-N~Llt~skD~~~kv~DiR~mkE----l~~~r~H-------------kkdv~~~~WhP~~~~lftsgg~Dg  329 (464)
T KOG0284|consen  268 LAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKE----LFTYRGH-------------KKDVTSLTWHPLNESLFTSGGSDG  329 (464)
T ss_pred             EEEEEcCCC-CeeEEccCCceEEEEehhHhHH----HHHhhcc-------------hhhheeeccccccccceeeccCCC
Confidence            999999999 9999999999999999997766    6889997             88999999999654 55554 669


Q ss_pred             eEEEEec---CcceeEe-ecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005          349 NLKVFRY---EPVMTLS-FCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       349 ~i~iwd~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                      .|..|.+   +++..+. .|...+|-..+           ....-.+++|+.|.+++.|..+
T Consensus       330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~-----------hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAY-----------HPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             ceEEEeccccccccCCCcccccceeeeec-----------cccceeEeecCCCcceeeeccC
Confidence            9999999   5555443 34333333222           2233358899999999999844

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.8e-34  Score=248.71  Aligned_cols=290  Identities=16%  Similarity=0.175  Sum_probs=231.6

Q ss_pred             CCccccCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005           25 PDEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (432)
Q Consensus        25 ~~~~~~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~  103 (432)
                      ....-+|+..|+++.|.| .+.+|++|+.|+.|+||++...                          .+++++|.+|.  
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~--------------------------~~~lrtf~gH~--  258 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD--------------------------RRCLRTFKGHR--  258 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC--------------------------cceehhhhcch--
Confidence            344457999999999999 8999999999999999999873                          35779999999  


Q ss_pred             ccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC-
Q 014005          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-  182 (432)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  182 (432)
                                .+|.+++|  +.+|..|++++.|+.+++||+++|++.......              ..+.++.|+|++ 
T Consensus       259 ----------k~Vrd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~--------------~~~~cvkf~pd~~  312 (503)
T KOG0282|consen  259 ----------KPVRDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD--------------KVPTCVKFHPDNQ  312 (503)
T ss_pred             ----------hhhhhhhc--cccCCeeeeeecceeeeeeccccceEEEEEecC--------------CCceeeecCCCCC
Confidence                      99999999  899999999999999999999999966544433              567889999998 


Q ss_pred             cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC
Q 014005          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (432)
Q Consensus       183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~  261 (432)
                      ..++.|+.  ++.|+.||++   .++.++.+ ..|-+.|..+.|-++|+.++++ +|+++++|+.+ ....++.+     
T Consensus       313 n~fl~G~s--d~ki~~wDiR---s~kvvqeY-d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~-~~v~ik~i-----  380 (503)
T KOG0282|consen  313 NIFLVGGS--DKKIRQWDIR---SGKVVQEY-DRHLGAILDITFVDEGRRFISSSDDKSVRIWENR-IPVPIKNI-----  380 (503)
T ss_pred             cEEEEecC--CCcEEEEecc---chHHHHHH-HhhhhheeeeEEccCCceEeeeccCccEEEEEcC-CCccchhh-----
Confidence            66677777  9999999999   77888888 8899999999999999999999 99999999999 33333321     


Q ss_pred             CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (432)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~  341 (432)
                       .....-...++..+|++ +++++-+.|+.|.++.+... ......+.|++|..           .+.-..+.|||||++
T Consensus       381 -~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~-~r~nkkK~feGh~v-----------aGys~~v~fSpDG~~  446 (503)
T KOG0282|consen  381 -ADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPP-FRLNKKKRFEGHSV-----------AGYSCQVDFSPDGRT  446 (503)
T ss_pred             -cchhhccCcceecCCCC-CeehhhccCceEEEEecccc-cccCHhhhhcceec-----------cCceeeEEEcCCCCe
Confidence             12333346789999999 99999999999999986532 12223577888721           345668999999999


Q ss_pred             EEEeeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          342 LLSRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       342 l~s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      |++|+. |.+.+||.   +.+..++.|..          .-+...|-.....-++|++.+|.|++|+
T Consensus       447 l~SGdsdG~v~~wdwkt~kl~~~lkah~~----------~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  447 LCSGDSDGKVNFWDWKTTKLVSKLKAHDQ----------PCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEeecCCccEEEeechhhhhhhccccCCc----------ceEEEEecCCCcceeEecccCceeEecC
Confidence            999954 99999999   66667777642          0111122222334589999999999996

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7e-33  Score=253.87  Aligned_cols=249  Identities=16%  Similarity=0.168  Sum_probs=202.9

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ...|+++|..+.|+|+.++|++++.|+++|+|.+.+..                           ++..++||.      
T Consensus       447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s---------------------------~~V~y~GH~------  493 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS---------------------------CLVIYKGHL------  493 (707)
T ss_pred             eecCCCceeeeeecccccceeeccCCcceeeeecccce---------------------------eEEEecCCC------
Confidence            56899999999999999999999999999999998854                           557889999      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                            .+|+.+.|  +|.|-+|||++.|++.++|........+  .+.+|-           +.+.++.|+|+..++++
T Consensus       494 ------~PVwdV~F--~P~GyYFatas~D~tArLWs~d~~~PlR--ifaghl-----------sDV~cv~FHPNs~Y~aT  552 (707)
T KOG0263|consen  494 ------APVWDVQF--APRGYYFATASHDQTARLWSTDHNKPLR--IFAGHL-----------SDVDCVSFHPNSNYVAT  552 (707)
T ss_pred             ------cceeeEEe--cCCceEEEecCCCceeeeeecccCCchh--hhcccc-----------cccceEEECCccccccc
Confidence                  99999999  7899999999999999999988765333  344444           78999999999999999


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      |+.  |.+|++||..   ++..++.| .+|.+.|.+++|+|+|++|++| .|+.|.+||+. .+..+..+       .+|
T Consensus       553 GSs--D~tVRlWDv~---~G~~VRiF-~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~-~~~~v~~l-------~~H  618 (707)
T KOG0263|consen  553 GSS--DRTVRLWDVS---TGNSVRIF-TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA-NGSLVKQL-------KGH  618 (707)
T ss_pred             CCC--CceEEEEEcC---CCcEEEEe-cCCCCceEEEEEcCCCceEeecccCCcEEEEEcC-CCcchhhh-------hcc
Confidence            988  9999999999   88999999 9999999999999999999999 99999999999 66666654       899


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccc--cceeecccc---cc--cCCccceeeeecceeEEEEcCCC
Q 014005          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH--SARILRDAA---ES--HGSKSFFTEIIASISDIKFANDG  339 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~h~---~~--~~~~~~~~~~~~~v~~~~~s~dg  339 (432)
                      .+.|.++.|+.+| .+||+|+.|++|++||+..-.....  ....-..|.   +.  ......|..-..+|..+.|...+
T Consensus       619 t~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrN  697 (707)
T KOG0263|consen  619 TGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRN  697 (707)
T ss_pred             cCceeEEEEecCC-CEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccc
Confidence            9999999999999 9999999999999999885332100  000000000   10  11113344445688888888766


Q ss_pred             CEEEEe
Q 014005          340 QHLLSR  345 (432)
Q Consensus       340 ~~l~s~  345 (432)
                      -.|+.|
T Consensus       698 l~L~~g  703 (707)
T KOG0263|consen  698 LLLAVG  703 (707)
T ss_pred             eeEEec
Confidence            555544

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=9.7e-32  Score=235.23  Aligned_cols=300  Identities=18%  Similarity=0.282  Sum_probs=225.4

Q ss_pred             ccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccC
Q 014005           10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP   89 (432)
Q Consensus        10 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   89 (432)
                      .=++|||+..++        .|+.-|.|+.|+|||.++|+++.||+|.|||=.+++.+                      
T Consensus       176 eGPPFKFk~s~r--------~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v----------------------  225 (603)
T KOG0318|consen  176 EGPPFKFKSSFR--------EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV----------------------  225 (603)
T ss_pred             eCCCeeeeeccc--------ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE----------------------
Confidence            345788887777        67889999999999999999999999999998887644                      


Q ss_pred             Ccceeeeee---cCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccc
Q 014005           90 EYRYKTEFQ---SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT  166 (432)
Q Consensus        90 ~~~~~~~~~---~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  166 (432)
                           ..+.   +|+            +.|.+++|  +||++.+++++.|.+++|||+.+.++.+...+...-       
T Consensus       226 -----g~l~~~~aHk------------GsIfalsW--sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v-------  279 (603)
T KOG0318|consen  226 -----GELEDSDAHK------------GSIFALSW--SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV-------  279 (603)
T ss_pred             -----EEecCCCCcc------------ccEEEEEE--CCCCceEEEecCCceEEEEEeeccceEEEeecCCch-------
Confidence                 4454   788            99999999  899999999999999999999998765554443211       


Q ss_pred             cccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEe
Q 014005          167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN  245 (432)
Q Consensus       167 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd  245 (432)
                         ......+.|.  ...+++.+.  +|.+.+++..   .....+++ .+|...|+++..+|++.++.+| .||.|.-||
T Consensus       280 ---~dqqvG~lWq--kd~lItVSl--~G~in~ln~~---d~~~~~~i-~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~  348 (603)
T KOG0318|consen  280 ---EDQQVGCLWQ--KDHLITVSL--SGTINYLNPS---DPSVLKVI-SGHNKSITALTVSPDGKTIYSGSYDGHINSWD  348 (603)
T ss_pred             ---hceEEEEEEe--CCeEEEEEc--CcEEEEeccc---CCChhhee-cccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence               1233344444  556666666  8999999998   55577777 8999999999999999999999 999999999


Q ss_pred             CCCCCcee-------------------------------eEeecCCCCc-------------------------------
Q 014005          246 LEISDQCF-------------------------------NIVDMKPSNM-------------------------------  263 (432)
Q Consensus       246 ~~~~~~~~-------------------------------~~~~~~~~~~-------------------------------  263 (432)
                      ... +..-                               +.++++....                               
T Consensus       349 ~~~-g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~  427 (603)
T KOG0318|consen  349 SGS-GTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD  427 (603)
T ss_pred             cCC-ccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence            842 1110                               1111100000                               


Q ss_pred             ----CC--------CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeeccee
Q 014005          264 ----DD--------LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (432)
Q Consensus       264 ----~~--------~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~  331 (432)
                          ..        -.-...+++++|++ +.+|.|+.||.|+||.+....++.  ......|             .++|+
T Consensus       428 iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l~e--e~~~~~h-------------~a~iT  491 (603)
T KOG0318|consen  428 IVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDELKE--EAKLLEH-------------RAAIT  491 (603)
T ss_pred             EEEEecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcccc--eeeeecc-------------cCCce
Confidence                00        01134578899999 999999999999999999766532  2334444             79999


Q ss_pred             EEEEcCCCCEEEEeeC-CeEEEEec--Cc--ceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          332 DIKFANDGQHLLSRDY-MNLKVFRY--EP--VMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       332 ~~~~s~dg~~l~s~~~-~~i~iwd~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      .+++|||+.|||+|+. +.+.+||+  +.  ...+.+|           +.++..+..+.....++||+.|.+|.||+
T Consensus       492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FH-----------takI~~~aWsP~n~~vATGSlDt~Viiys  558 (603)
T KOG0318|consen  492 DVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFH-----------TAKINCVAWSPNNKLVATGSLDTNVIIYS  558 (603)
T ss_pred             EEEECCCCcEEEEeccCCcEEEEEcccCceecceeeee-----------eeeEEEEEeCCCceEEEeccccceEEEEE
Confidence            9999999999999987 99999999  21  2222233           23444443344445799999999999999

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.3e-32  Score=245.82  Aligned_cols=295  Identities=16%  Similarity=0.241  Sum_probs=232.3

Q ss_pred             CcEEEEEEcCCCCEEEEeccc-ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           33 DIVSAIEFDKTGDYLAVGDRG-GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~t~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ..|..++|+..|++||.|+.. |.+-||+..+..                           ++...++|.          
T Consensus       308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs---------------------------YVlKQQgH~----------  350 (893)
T KOG0291|consen  308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES---------------------------YVLKQQGHS----------  350 (893)
T ss_pred             ceeeEEEecccCCEEEEcCCccceEEEEEeeccc---------------------------eeeeccccc----------
Confidence            578899999999999998754 799999998865                           346678999          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                        ..++++++  +|||+++++|+.||+|++||..++-  .+..+..|.           +.+..+.|+..+..+.+.+. 
T Consensus       351 --~~i~~l~Y--SpDgq~iaTG~eDgKVKvWn~~Sgf--C~vTFteHt-----------s~Vt~v~f~~~g~~llssSL-  412 (893)
T KOG0291|consen  351 --DRITSLAY--SPDGQLIATGAEDGKVKVWNTQSGF--CFVTFTEHT-----------SGVTAVQFTARGNVLLSSSL-  412 (893)
T ss_pred             --cceeeEEE--CCCCcEEEeccCCCcEEEEeccCce--EEEEeccCC-----------CceEEEEEEecCCEEEEeec-
Confidence              89999999  9999999999999999999999887  344455555           89999999999999999999 


Q ss_pred             ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                       ||+|+.||+.   ..++.++|.....-...|++..|.|..+..|  +.-.|.+|+++ +++.+.++       .+|.++
T Consensus       413 -DGtVRAwDlk---RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q-TGqllDiL-------sGHEgP  480 (893)
T KOG0291|consen  413 -DGTVRAWDLK---RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ-TGQLLDIL-------SGHEGP  480 (893)
T ss_pred             -CCeEEeeeec---ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee-cCeeeehh-------cCCCCc
Confidence             9999999999   8889999866666788899999999999888  45579999999 88888877       999999


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CC
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~  348 (432)
                      |.+++|+|.+ ..|++++.|.+|++||+-.....   ..+++-              ...+.+++|+|||+-||.++ ||
T Consensus       481 Vs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~---vEtl~i--------------~sdvl~vsfrPdG~elaVaTldg  542 (893)
T KOG0291|consen  481 VSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGT---VETLEI--------------RSDVLAVSFRPDGKELAVATLDG  542 (893)
T ss_pred             ceeeEEcccc-CeEEeccccceEEEEEeeccCce---eeeEee--------------ccceeEEEEcCCCCeEEEEEecc
Confidence            9999999999 99999999999999999865321   355554              57899999999999999974 59


Q ss_pred             eEEEEec-CcceeEeecceeeeehhhhhc-----------ccccccccceeeEEEEeecccceeeeeccCCeeeec
Q 014005          349 NLKVFRY-EPVMTLSFCGIYVWILRQLQH-----------SRFMSIYALSCVIYIITTLYLINLSALSAGMDSILQ  412 (432)
Q Consensus       349 ~i~iwd~-~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~  412 (432)
                      .|.+||+ ...+.....+...........           ..+..+.......+|++|...++|++|+.-.+++++
T Consensus       543 qItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk  618 (893)
T KOG0291|consen  543 QITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK  618 (893)
T ss_pred             eEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence            9999999 222222111110000001111           122222222233368999999999999954444433

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.4e-32  Score=245.78  Aligned_cols=271  Identities=14%  Similarity=0.241  Sum_probs=219.0

Q ss_pred             CCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005           24 NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (432)
Q Consensus        24 ~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~  103 (432)
                      -..+...|...++|++++|||+++|||+.||.|+|||...+-                           |..+|..|+  
T Consensus       342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf---------------------------C~vTFteHt--  392 (893)
T KOG0291|consen  342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF---------------------------CFVTFTEHT--  392 (893)
T ss_pred             eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce---------------------------EEEEeccCC--
Confidence            345667899999999999999999999999999999998865                           668999999  


Q ss_pred             ccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (432)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  183 (432)
                                ..|+.+.|  +..|+.+++++.||+|+.||+.....-+.....  .          .-...+++..|.+.
T Consensus       393 ----------s~Vt~v~f--~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P--~----------p~QfscvavD~sGe  448 (893)
T KOG0291|consen  393 ----------SGVTAVQF--TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP--E----------PIQFSCVAVDPSGE  448 (893)
T ss_pred             ----------CceEEEEE--EecCCEEEEeecCCeEEeeeecccceeeeecCC--C----------ceeeeEEEEcCCCC
Confidence                      99999999  889999999999999999999887643332222  1          24567888899999


Q ss_pred             ceecceeeccc-eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC
Q 014005          184 HGYHLEWTENM-ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (432)
Q Consensus       184 ~~~~~~~~~~~-~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~  261 (432)
                      .+..|..  |. .|.+|+++   +++.+-.+ .+|.++|.+++|+|.+..|++| .|.+|++||+-......+++     
T Consensus       449 lV~AG~~--d~F~IfvWS~q---TGqllDiL-sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-----  517 (893)
T KOG0291|consen  449 LVCAGAQ--DSFEIFVWSVQ---TGQLLDIL-SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-----  517 (893)
T ss_pred             EEEeecc--ceEEEEEEEee---cCeeeehh-cCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-----
Confidence            9888876  54 89999999   88999999 9999999999999999999999 99999999997444455554     


Q ss_pred             CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc-------cceeeeecceeEEE
Q 014005          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-------SFFTEIIASISDIK  334 (432)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~-------~~~~~~~~~v~~~~  334 (432)
                         .+...+..++|+|+| +.||+++.||.|.+||...+..    ...+.+.......+       ..-.......+.++
T Consensus       518 ---~i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q----~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~  589 (893)
T KOG0291|consen  518 ---EIRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQ----VGSIDGRKDLSGGRKETDRITAENSAKGKTFTTIC  589 (893)
T ss_pred             ---eeccceeEEEEcCCC-CeEEEEEecceEEEEEhhhcee----eccccchhhccccccccceeehhhcccCCceEEEE
Confidence               455679999999999 9999999999999999987654    23333311111111       00111235789999


Q ss_pred             EcCCCCEEEEeeC-CeEEEEec---CcceeEeecce
Q 014005          335 FANDGQHLLSRDY-MNLKVFRY---EPVMTLSFCGI  366 (432)
Q Consensus       335 ~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~~~  366 (432)
                      +|+||.+|++|+. +.|++||+   ..++.++....
T Consensus       590 ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N  625 (893)
T KOG0291|consen  590 YSADGKCILAGGESNSICIYDVPEGVLLKKFQISDN  625 (893)
T ss_pred             EcCCCCEEEecCCcccEEEEECchhheeeeEEeccc
Confidence            9999999999766 99999999   56777777554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.7e-31  Score=236.73  Aligned_cols=278  Identities=21%  Similarity=0.268  Sum_probs=225.1

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .|.+.|++++|+|++++|++++.||.+++|++.+++.                           ...+..|.        
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~---------------------------~~~~~~~~--------   51 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL---------------------------LRTLKGHT--------   51 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc---------------------------EEEEecCC--------
Confidence            5889999999999999999999999999999987653                           25677787        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                          ..+..+.|  .++++++++++.||.|++|++..++...  .+..+.           ..+.++.|++++.+++.+.
T Consensus        52 ----~~i~~~~~--~~~~~~l~~~~~~~~i~i~~~~~~~~~~--~~~~~~-----------~~i~~~~~~~~~~~~~~~~  112 (289)
T cd00200          52 ----GPVRDVAA--SADGTYLASGSSDKTIRLWDLETGECVR--TLTGHT-----------SYVSSVAFSPDGRILSSSS  112 (289)
T ss_pred             ----cceeEEEE--CCCCCEEEEEcCCCeEEEEEcCcccceE--EEeccC-----------CcEEEEEEcCCCCEEEEec
Confidence                88889999  7888999999999999999998764222  222233           5788999999988888888


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      .  ++.+.+||+.   ..+....+ ..|...+.+++|+|++.+++++ .|+.+++||++ ..+....+       ..|..
T Consensus       113 ~--~~~i~~~~~~---~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~-------~~~~~  178 (289)
T cd00200         113 R--DKTIKVWDVE---TGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR-TGKCVATL-------TGHTG  178 (289)
T ss_pred             C--CCeEEEEECC---CcEEEEEe-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc-ccccceeE-------ecCcc
Confidence            6  8999999998   56777777 6788899999999999999988 69999999998 55566555       67778


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-C
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~  347 (432)
                      .+.++.|+|++ +.+++++.|+.|++||+++++.    ...+..|             ...+.+++|+|++.++++++ +
T Consensus       179 ~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~----~~~~~~~-------------~~~i~~~~~~~~~~~~~~~~~~  240 (289)
T cd00200         179 EVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKC----LGTLRGH-------------ENGVNSVAFSPDGYLLASGSED  240 (289)
T ss_pred             ccceEEECCCc-CEEEEecCCCcEEEEECCCCce----ecchhhc-------------CCceEEEEEcCCCcEEEEEcCC
Confidence            89999999998 8899999999999999998665    4666565             67899999999999999987 6


Q ss_pred             CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          348 MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       348 ~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      +.+++||+   .++..+..+..           .+...........+++++.|+.+.+|+
T Consensus       241 ~~i~i~~~~~~~~~~~~~~~~~-----------~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         241 GTIRVWDLRTGECVQTLSGHTN-----------SVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CcEEEEEcCCceeEEEccccCC-----------cEEEEEECCCCCEEEEecCCCeEEecC
Confidence            99999999   34444543332           222222222234688899999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=9.1e-32  Score=252.44  Aligned_cols=285  Identities=18%  Similarity=0.276  Sum_probs=226.8

Q ss_pred             CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      +...|.|+.|+|+|++|++++.|+.+++|+..+.+.                         .....+.+|.         
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~~~l~~h~---------  203 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------NLLRELSGHT---------  203 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------hhhccccccc---------
Confidence            367899999999999999999999999999966540                         1224567898         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                         ..|.+++|  +|+++++++++.|++|++||+... ...+..+..|.           ..+.+++|+|++..+++|+.
T Consensus       204 ---~~v~~~~f--s~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH~-----------~~v~~~~f~p~g~~i~Sgs~  266 (456)
T KOG0266|consen  204 ---RGVSDVAF--SPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGHS-----------TYVTSVAFSPDGNLLVSGSD  266 (456)
T ss_pred             ---cceeeeEE--CCCCcEEEEecCCceEEEeeccCC-CeEEEEecCCC-----------CceEEEEecCCCCEEEEecC
Confidence               99999999  899999999999999999999333 12344455666           88999999999999999999


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCc--eeeEeecCCCCcCCCC
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDLT  267 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~  267 (432)
                        |++|++||++   .+++.+.+ .+|.+.|++++|+++++.++++ .|+.|++||+. ++.  +.+.+       .++.
T Consensus       267 --D~tvriWd~~---~~~~~~~l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~-~~~~~~~~~~-------~~~~  332 (456)
T KOG0266|consen  267 --DGTVRIWDVR---TGECVRKL-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE-TGSKLCLKLL-------SGAE  332 (456)
T ss_pred             --CCcEEEEecc---CCeEEEee-eccCCceEEEEECCCCCEEEEcCCCccEEEEECC-CCceeeeecc-------cCCC
Confidence              9999999999   78999999 8999999999999999999999 89999999999 555  34443       3443


Q ss_pred             c--ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005          268 E--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       268 ~--~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                      .  .+++++|+|++ .+++++..|+.+++||++.+..    ...+.+|...          ...+.+...++.|+++.+|
T Consensus       333 ~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~----~~~~~~~~~~----------~~~~~~~~~~~~~~~i~sg  397 (456)
T KOG0266|consen  333 NSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKS----VGTYTGHSNL----------VRCIFSPTLSTGGKLIYSG  397 (456)
T ss_pred             CCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCcc----eeeecccCCc----------ceeEecccccCCCCeEEEE
Confidence            3  59999999999 9999999999999999998876    5788887221          0244555668899999998


Q ss_pred             eC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeec--ccceeeeecc
Q 014005          346 DY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTL--YLINLSALSA  405 (432)
Q Consensus       346 ~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~i~~~~~  405 (432)
                      .. +.|++||+   ..+..+..|.          ....+.........++++++  .|+.+.+|..
T Consensus       398 ~~d~~v~~~~~~s~~~~~~l~~h~----------~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  398 SEDGSVYVWDSSSGGILQRLEGHS----------KAAVSDLSSHPTENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             eCCceEEEEeCCccchhhhhcCCC----------CCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence            55 99999999   5555666552          11222222222333566666  6788999874

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=7.7e-31  Score=211.53  Aligned_cols=283  Identities=16%  Similarity=0.196  Sum_probs=228.5

Q ss_pred             cccCCCcEEEEEEcCC-CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeee-ecCCcccc
Q 014005           28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFD  105 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~-g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~  105 (432)
                      ...|++.|..++|+|- |..||+|+.|+.||||+...+.                        .+.+...+ .+|+    
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~------------------------s~~ck~vld~~hk----   61 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD------------------------SWTCKTVLDDGHK----   61 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC------------------------cEEEEEeccccch----
Confidence            4468889999999998 8999999999999999988533                        34454444 3688    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (432)
                              ..|.+++|  +|.|++|++++.|.++.||.-..+..+.+..+.+|.           ..|.+++|++++.+|
T Consensus        62 --------rsVRsvAw--sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHE-----------nEVK~Vaws~sG~~L  120 (312)
T KOG0645|consen   62 --------RSVRSVAW--SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHE-----------NEVKCVAWSASGNYL  120 (312)
T ss_pred             --------heeeeeee--cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccc-----------cceeEEEEcCCCCEE
Confidence                    99999999  899999999999999999999988888888888888           999999999999999


Q ss_pred             ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC--ceeeEeecCCCC
Q 014005          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPSN  262 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~--~~~~~~~~~~~~  262 (432)
                      ++++.  |..|-||.........|...+ ..|...|..+.|+|...+|+++ .|++|++|+-...+  .+..++      
T Consensus       121 ATCSR--DKSVWiWe~deddEfec~aVL-~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl------  191 (312)
T KOG0645|consen  121 ATCSR--DKSVWIWEIDEDDEFECIAVL-QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL------  191 (312)
T ss_pred             EEeeC--CCeEEEEEecCCCcEEEEeee-ccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEe------
Confidence            99999  999999999877788899999 8999999999999999999999 99999999876222  355554      


Q ss_pred             cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (432)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  342 (432)
                       .+|.+.|.+++|+|.| ..|++++.|++++||...+.-      ..  .|             ...+..+.|. +| .|
T Consensus       192 -~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~~------~~--~~-------------sr~~Y~v~W~-~~-~I  246 (312)
T KOG0645|consen  192 -DGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTDL------SG--MH-------------SRALYDVPWD-NG-VI  246 (312)
T ss_pred             -cCccceEEEEEecCCC-ceEEEecCCcceEeeeeccCc------ch--hc-------------ccceEeeeec-cc-ce
Confidence             8999999999999999 999999999999999976321      11  12             5788999999 44 77


Q ss_pred             EE-eeCCeEEEEecC-----ccee-----Eeecceeeeehhhhhccccccc-ccceeeEEEEeecccceeeeec
Q 014005          343 LS-RDYMNLKVFRYE-----PVMT-----LSFCGIYVWILRQLQHSRFMSI-YALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       343 ~s-~~~~~i~iwd~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      |+ |+|+.|++|.-.     +.-.     -..|+           ..+... +.....-.+++|+.||.+++|.
T Consensus       247 aS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe-----------~dVNsV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  247 ASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHE-----------VDVNSVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             EeccCCCEEEEEEecCCCCCchHHHHHhhhcccc-----------cccceEEEcCCCCCceeecCCCceEEEEE
Confidence            77 477999999771     1111     11111           111111 1111223589999999999997

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.3e-32  Score=233.49  Aligned_cols=243  Identities=16%  Similarity=0.237  Sum_probs=208.2

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ...|.++|+++.|+++|.++++|+.+|.|++|+.+-...                            ..+++|.      
T Consensus       134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV----------------------------k~~~ahh------  179 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV----------------------------KIIQAHH------  179 (464)
T ss_pred             hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh----------------------------HHhhHhh------
Confidence            457899999999999999999999999999999765432                            3555554      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                           ...|.+++|  +|+...|++++.||+|+|||....+.+...  .+|.           ..+++++|+|....+++
T Consensus       180 -----~eaIRdlaf--SpnDskF~t~SdDg~ikiWdf~~~kee~vL--~GHg-----------wdVksvdWHP~kgLias  239 (464)
T KOG0284|consen  180 -----AEAIRDLAF--SPNDSKFLTCSDDGTIKIWDFRMPKEERVL--RGHG-----------WDVKSVDWHPTKGLIAS  239 (464)
T ss_pred             -----hhhhheecc--CCCCceeEEecCCCeEEEEeccCCchhhee--ccCC-----------CCcceeccCCccceeEE
Confidence                 278999999  888889999999999999999876644332  4444           78999999999999999


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      ++.  |+.|++||.+   ++.|+.++ .+|...|..+.|+|++++|+++ .|..++++|++ +-+.+..+       .+|
T Consensus       240 gsk--DnlVKlWDpr---Sg~cl~tl-h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR-~mkEl~~~-------r~H  305 (464)
T KOG0284|consen  240 GSK--DNLVKLWDPR---SGSCLATL-HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR-TMKELFTY-------RGH  305 (464)
T ss_pred             ccC--CceeEeecCC---Ccchhhhh-hhccceEEEEEEcCCCCeeEEccCCceEEEEehh-HhHHHHHh-------hcc
Confidence            999  8999999999   89999999 8999999999999999999999 99999999999 44444433       899


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee-cccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                      ...++++.|+|-.+.+|.+|+.||.|..|.+...+.    +..+ .+|             ...|++++|+|=|..|++|
T Consensus       306 kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p----~~~i~~AH-------------d~~iwsl~~hPlGhil~tg  368 (464)
T KOG0284|consen  306 KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP----LGEIPPAH-------------DGEIWSLAYHPLGHILATG  368 (464)
T ss_pred             hhhheeeccccccccceeeccCCCceEEEecccccc----ccCCCccc-------------ccceeeeeccccceeEeec
Confidence            999999999998889999999999999999884333    2222 233             8899999999999999998


Q ss_pred             eC-CeEEEEec
Q 014005          346 DY-MNLKVFRY  355 (432)
Q Consensus       346 ~~-~~i~iwd~  355 (432)
                      +. .++++|.-
T Consensus       369 snd~t~rfw~r  379 (464)
T KOG0284|consen  369 SNDRTVRFWTR  379 (464)
T ss_pred             CCCcceeeecc
Confidence            54 99999977

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.4e-31  Score=209.38  Aligned_cols=250  Identities=14%  Similarity=0.175  Sum_probs=211.7

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .++++|.++.|+-+|+|.++++.|++|++|+...+.                           ++.++.+|.        
T Consensus        15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~---------------------------liktYsghG--------   59 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA---------------------------LIKTYSGHG--------   59 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcCCCceEEeecccccc---------------------------eeeeecCCC--------
Confidence            467899999999999999999999999999998876                           448999999        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                          ..|..++.  +.|+..|++|+.|+.+.+||+.+|+  ....+..|.           +.|..+.|+.+...+++|+
T Consensus        60 ----~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGk--v~Rr~rgH~-----------aqVNtV~fNeesSVv~Sgs  120 (307)
T KOG0316|consen   60 ----HEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGK--VDRRFRGHL-----------AQVNTVRFNEESSVVASGS  120 (307)
T ss_pred             ----ceeeeccc--cccccccccCCCCceEEEEEcccCe--eeeeccccc-----------ceeeEEEecCcceEEEecc
Confidence                88999999  8899999999999999999999998  444556666           8999999999999999999


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      +  |..+++||.+.. ..++++++ ....+.|.++.++  +..+++| .||+++.||++ .+....         .-...
T Consensus       121 f--D~s~r~wDCRS~-s~ePiQil-dea~D~V~Si~v~--~heIvaGS~DGtvRtydiR-~G~l~s---------Dy~g~  184 (307)
T KOG0316|consen  121 F--DSSVRLWDCRSR-SFEPIQIL-DEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIR-KGTLSS---------DYFGH  184 (307)
T ss_pred             c--cceeEEEEcccC-CCCccchh-hhhcCceeEEEec--ccEEEeeccCCcEEEEEee-cceeeh---------hhcCC
Confidence            9  999999999866 66788888 7778889999885  4567888 99999999999 554433         34456


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  347 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-  347 (432)
                      +|+++.|++++ +..+.++.|+++++.|-.+|++    ++.+.+|.+           ...-.+.+++.....+++|++ 
T Consensus       185 pit~vs~s~d~-nc~La~~l~stlrLlDk~tGkl----L~sYkGhkn-----------~eykldc~l~qsdthV~sgSED  248 (307)
T KOG0316|consen  185 PITSVSFSKDG-NCSLASSLDSTLRLLDKETGKL----LKSYKGHKN-----------MEYKLDCCLNQSDTHVFSGSED  248 (307)
T ss_pred             cceeEEecCCC-CEEEEeeccceeeecccchhHH----HHHhccccc-----------ceeeeeeeecccceeEEeccCC
Confidence            89999999999 9999999999999999999998    789999822           223346677777889999865 


Q ss_pred             CeEEEEec---CcceeEeecc
Q 014005          348 MNLKVFRY---EPVMTLSFCG  365 (432)
Q Consensus       348 ~~i~iwd~---~~~~~~~~~~  365 (432)
                      |.+++||+   ..+..++.+.
T Consensus       249 G~Vy~wdLvd~~~~sk~~~~~  269 (307)
T KOG0316|consen  249 GKVYFWDLVDETQISKLSVVS  269 (307)
T ss_pred             ceEEEEEeccceeeeeeccCC
Confidence            99999999   4555555554

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-31  Score=244.42  Aligned_cols=273  Identities=15%  Similarity=0.196  Sum_probs=205.4

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccc--------------------cchhhh---------cc
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHI--------------------SRSELE---------KQ   80 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~--------------------~~~~~~---------~~   80 (432)
                      .|.+.|+++.||+||+|||+|+.|+.||||.+...+.......                    ......         ..
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            6899999999999999999999999999999876221100000                    000000         00


Q ss_pred             cccc----ccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecC
Q 014005           81 MDFT----STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD  156 (432)
Q Consensus        81 ~~~~----~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  156 (432)
                      ...+    -++.-..+++..|.||.            +.|.+|+|  +.+ ++|++++.|++|++|++....+.++..++
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSW--SKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn  409 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSW--SKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHN  409 (712)
T ss_pred             CccccCCCccccccccchhhhhccc------------hhheeccc--ccC-CeeEeccccccEEeecCCCcceeeEEecC
Confidence            0000    01111456778899999            99999999  554 59999999999999999988877776664


Q ss_pred             CCCccccccccccccccccccCCCC-CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE
Q 014005          157 HFPFVSSENTLLAEKNFMNEHNPPS-FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS  235 (432)
Q Consensus       157 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  235 (432)
                                    .-|++++|+|. ..|+++|+.  |+.++||++.   ..+...-  ..-..-|++++|.|+|+..+.
T Consensus       410 --------------dfVTcVaFnPvDDryFiSGSL--D~KvRiWsI~---d~~Vv~W--~Dl~~lITAvcy~PdGk~avI  468 (712)
T KOG0283|consen  410 --------------DFVTCVAFNPVDDRYFISGSL--DGKVRLWSIS---DKKVVDW--NDLRDLITAVCYSPDGKGAVI  468 (712)
T ss_pred             --------------CeeEEEEecccCCCcEeeccc--ccceEEeecC---cCeeEee--hhhhhhheeEEeccCCceEEE
Confidence                          78999999995 789999999  9999999997   3333332  344578999999999999999


Q ss_pred             E-cCCeEEEEeCCCCCceeeEeecCCC--CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc
Q 014005          236 A-DDLRINLWNLEISDQCFNIVDMKPS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  312 (432)
Q Consensus       236 ~-~d~~i~lwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (432)
                      | -+|.+++|+.. ..+....+.+...  .-..|. .|++++|.|..+..+++.+.|..|||+|.++..+    +..|++
T Consensus       469 Gt~~G~C~fY~t~-~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l----v~KfKG  542 (712)
T KOG0283|consen  469 GTFNGYCRFYDTE-GLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL----VHKFKG  542 (712)
T ss_pred             EEeccEEEEEEcc-CCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhh----hhhhcc
Confidence            9 99999999998 5554444433222  212233 7999999998766677888999999999987776    577776


Q ss_pred             cccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       313 h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      +.+           ...-....|+.||++|+++++ ..|++|+.
T Consensus       543 ~~n-----------~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  543 FRN-----------TSSQISASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             ccc-----------CCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence            311           244567899999999999855 99999997

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.8e-31  Score=234.02  Aligned_cols=258  Identities=15%  Similarity=0.250  Sum_probs=220.5

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..+++.|.|+.|+|...+++++-.+|.+.||+.++...+                           ..++-.+       
T Consensus        10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV---------------------------ksfeV~~-------   55 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV---------------------------KSFEVSE-------   55 (794)
T ss_pred             hccCCceeeeecCCCCceEEEeeecCeeEEEecccceee---------------------------eeeeecc-------
Confidence            357899999999999999999999999999999997643                           5565555       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           .+|.+..|  -...+++++|+.|..|++|+..+.+  ++..+..|+           ..|++++.+|...++.++
T Consensus        56 -----~PvRa~kf--iaRknWiv~GsDD~~IrVfnynt~e--kV~~FeAH~-----------DyIR~iavHPt~P~vLts  115 (794)
T KOG0276|consen   56 -----VPVRAAKF--IARKNWIVTGSDDMQIRVFNYNTGE--KVKTFEAHS-----------DYIRSIAVHPTLPYVLTS  115 (794)
T ss_pred             -----cchhhhee--eeccceEEEecCCceEEEEecccce--eeEEeeccc-----------cceeeeeecCCCCeEEec
Confidence                 78889999  4667899999999999999999876  666666677           899999999999999999


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      +.  |..|++||.+.  ...|.++| .+|...|++++|+| |.+.++++ -|++|++|.+. ...+..++       ++|
T Consensus       116 SD--Dm~iKlW~we~--~wa~~qtf-eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg-s~~~nfTl-------~gH  182 (794)
T KOG0276|consen  116 SD--DMTIKLWDWEN--EWACEQTF-EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG-SPHPNFTL-------EGH  182 (794)
T ss_pred             CC--ccEEEEeeccC--ceeeeeEE-cCcceEEEEEEecCCCccceeeeeccccEEEEEcC-CCCCceee-------ecc
Confidence            99  99999999986  67888999 89999999999999 56789999 89999999999 45555544       899


Q ss_pred             CcceEEEEEcCCC-CcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005          267 TEVITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       267 ~~~v~~~~~~p~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                      ...|++++|-+-| ..+|++|+.|.+|+|||.++.. |   ++++++|             ...|+.+.|+|.-..+++|
T Consensus       183 ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-C---V~TLeGH-------------t~Nvs~v~fhp~lpiiisg  245 (794)
T KOG0276|consen  183 EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-C---VQTLEGH-------------TNNVSFVFFHPELPIIISG  245 (794)
T ss_pred             ccCcceEEeccCCCcceEEecCCCceEEEeecchHH-H---HHHhhcc-------------cccceEEEecCCCcEEEEe
Confidence            9999999998755 3699999999999999999755 4   7999998             8899999999999999998


Q ss_pred             eC-CeEEEEec---CcceeEeecceeeee
Q 014005          346 DY-MNLKVFRY---EPVMTLSFCGIYVWI  370 (432)
Q Consensus       346 ~~-~~i~iwd~---~~~~~~~~~~~~~~~  370 (432)
                      +. |++|||+-   +...++......+|.
T Consensus       246 sEDGTvriWhs~Ty~lE~tLn~gleRvW~  274 (794)
T KOG0276|consen  246 SEDGTVRIWNSKTYKLEKTLNYGLERVWC  274 (794)
T ss_pred             cCCccEEEecCcceehhhhhhcCCceEEE
Confidence            65 99999998   444555544443443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6.6e-33  Score=230.85  Aligned_cols=296  Identities=15%  Similarity=0.249  Sum_probs=220.9

Q ss_pred             cchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCC
Q 014005           11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE   90 (432)
Q Consensus        11 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   90 (432)
                      ...|+.....-.+..... ...+.|+|+++.  ...+++|..|++|+|||.++..                         
T Consensus       177 dsNWr~Gr~~~~rinc~S-e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~-------------------------  228 (499)
T KOG0281|consen  177 ESNWRCGRHLLQRINCRS-ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE-------------------------  228 (499)
T ss_pred             hcchhccceeeeeecCCc-ccCCceEEEEec--chhhhcccccCceEEeccccHH-------------------------
Confidence            456777654433322222 256789999986  5569999999999999988754                         


Q ss_pred             cceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccc
Q 014005           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (432)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (432)
                        +...+.||+            +.|.|+.|    +.+.+++|+.|.+|++||++++++.+.  +-+|.           
T Consensus       229 --c~~~L~GHt------------GSVLCLqy----d~rviisGSSDsTvrvWDv~tge~l~t--lihHc-----------  277 (499)
T KOG0281|consen  229 --CLKILTGHT------------GSVLCLQY----DERVIVSGSSDSTVRVWDVNTGEPLNT--LIHHC-----------  277 (499)
T ss_pred             --HHHhhhcCC------------CcEEeeec----cceEEEecCCCceEEEEeccCCchhhH--Hhhhc-----------
Confidence              457889999            99999999    567999999999999999999984333  33333           


Q ss_pred             cccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCC
Q 014005          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  249 (432)
Q Consensus       171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~  249 (432)
                      ..|..+.|+  ..++++++.  |.++.+||+.......+.+.+ .+|...|+.+.|+.  ++++++ .|.+|++|++. +
T Consensus       278 eaVLhlrf~--ng~mvtcSk--DrsiaVWdm~sps~it~rrVL-vGHrAaVNvVdfd~--kyIVsASgDRTikvW~~s-t  349 (499)
T KOG0281|consen  278 EAVLHLRFS--NGYMVTCSK--DRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTS-T  349 (499)
T ss_pred             ceeEEEEEe--CCEEEEecC--CceeEEEeccCchHHHHHHHH-hhhhhheeeecccc--ceEEEecCCceEEEEecc-c
Confidence            556666664  356777777  999999999877667777777 89999999999964  599999 99999999999 7


Q ss_pred             CceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecc
Q 014005          250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (432)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~  329 (432)
                      ..+++++       .+|...|-|+.+.  + +++++|+.|.+|++||+..|..    ++.+++|             ..-
T Consensus       350 ~efvRtl-------~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~c----LRvLeGH-------------EeL  402 (499)
T KOG0281|consen  350 CEFVRTL-------NGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGAC----LRVLEGH-------------EEL  402 (499)
T ss_pred             eeeehhh-------hcccccceehhcc--C-eEEEecCCCceEEEEeccccHH----HHHHhch-------------HHh
Confidence            8888876       8999999888774  5 8999999999999999999886    7999998             788


Q ss_pred             eeEEEEcCCCCEEEEeeC-CeEEEEecCcceeEeecceeeeehhhhhcc-cccccccceeeEEEEeecccceeeeec
Q 014005          330 ISDIKFANDGQHLLSRDY-MNLKVFRYEPVMTLSFCGIYVWILRQLQHS-RFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       330 v~~~~~s~dg~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      |.++.|.  .+.+++|.+ |+|++||+..-..-+......-+.....++ ++..+-+  .-+.+++.+.|..|-||+
T Consensus       403 vRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd  475 (499)
T KOG0281|consen  403 VRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD  475 (499)
T ss_pred             hhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence            9999997  568999866 999999991100001111000000000000 1111111  124699999999999999

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=7.8e-31  Score=226.66  Aligned_cols=296  Identities=15%  Similarity=0.163  Sum_probs=229.3

Q ss_pred             CccccCCCcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005           26 DEELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (432)
Q Consensus        26 ~~~~~h~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~  104 (432)
                      .+.+.|+.+|.+.+|+|... .|++|+.|-+.++|++......     ....+.-            +......++    
T Consensus       172 ~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~-----~~~q~~l------------rh~~~~~~~----  230 (524)
T KOG0273|consen  172 AKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNI-----GSTQLVL------------RHCIREGGK----  230 (524)
T ss_pred             eeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccc-----cchhhhh------------hhhhhhhcc----
Confidence            34566999999999999877 8999999999999998752110     0000000            000001111    


Q ss_pred             cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                          +......|++++|  +.+|..|++|+.||.+++|+........   +..|.           ++|.++.|+..+.+
T Consensus       231 ----s~~~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~~G~l~~t---l~~Hk-----------gPI~slKWnk~G~y  290 (524)
T KOG0273|consen  231 ----SVPSNKDVTSLDW--NNDGTLLATGSEDGEARIWNKDGNLIST---LGQHK-----------GPIFSLKWNKKGTY  290 (524)
T ss_pred             ----cCCccCCcceEEe--cCCCCeEEEeecCcEEEEEecCchhhhh---hhccC-----------CceEEEEEcCCCCE
Confidence                1111267999999  8999999999999999999988765433   33444           89999999999999


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (432)
                      +++++.  |+++.+||..   ++...+.+ .-|...-..+.|-.+. .+++. .|+.|+++.+. .+.+..++       
T Consensus       291 ilS~~v--D~ttilwd~~---~g~~~q~f-~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~-~~~P~~t~-------  355 (524)
T KOG0273|consen  291 ILSGGV--DGTTILWDAH---TGTVKQQF-EFHSAPALDVDWQSND-EFATSSTDGCIHVCKVG-EDRPVKTF-------  355 (524)
T ss_pred             EEeccC--CccEEEEecc---CceEEEee-eeccCCccceEEecCc-eEeecCCCceEEEEEec-CCCcceee-------
Confidence            999999  9999999998   67777777 5677666778887665 45655 99999999999 67777766       


Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC---
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ---  340 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~---  340 (432)
                      .+|.+.|.++.|+|.+ .+|++++.|++++||.+....-    ...+..|             ...|..+.|+|+|.   
T Consensus       356 ~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~----~~~l~~H-------------skei~t~~wsp~g~v~~  417 (524)
T KOG0273|consen  356 IGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNS----VHDLQAH-------------SKEIYTIKWSPTGPVTS  417 (524)
T ss_pred             ecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcc----hhhhhhh-------------ccceeeEeecCCCCccC
Confidence            8899999999999999 9999999999999999876554    5778887             78899999999753   


Q ss_pred             ------EEEEe-eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005          341 ------HLLSR-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       341 ------~l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                            .|+++ .|++|++||+   .++.++-.|.           .++.++.+....-++++|+.||.|++|+..
T Consensus       418 n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~-----------~pVysvafS~~g~ylAsGs~dg~V~iws~~  482 (524)
T KOG0273|consen  418 NPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ-----------EPVYSVAFSPNGRYLASGSLDGCVHIWSTK  482 (524)
T ss_pred             CCcCCceEEEeecCCeEEEEEccCCceeEeeccCC-----------CceEEEEecCCCcEEEecCCCCeeEecccc
Confidence                  56664 6699999999   5666665454           366666666566689999999999999954

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.8e-30  Score=207.54  Aligned_cols=245  Identities=15%  Similarity=0.290  Sum_probs=205.4

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .|+..|++++|+|.|++||+|+.|.++.||.-..+                         +++++.++.||+        
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-------------------------efecv~~lEGHE--------  105 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-------------------------EFECVATLEGHE--------  105 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCC-------------------------ceeEEeeeeccc--------
Confidence            68999999999999999999999999999997765                         467889999999        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc-ceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                          ..|-+++|  +++|.+||++++|+.|-||.+..+ +......++.|.           ..|..+.|+|....|+++
T Consensus       106 ----nEVK~Vaw--s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht-----------qDVK~V~WHPt~dlL~S~  168 (312)
T KOG0645|consen  106 ----NEVKCVAW--SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT-----------QDVKHVIWHPTEDLLFSC  168 (312)
T ss_pred             ----cceeEEEE--cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc-----------ccccEEEEcCCcceeEEe
Confidence                99999999  899999999999999999999744 466677777777           789999999999999999


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      +.  |++|++|+-.......|.+++ .+|...|.+++|++.|..|+++ +|++++||... ..-.           ..|.
T Consensus       169 SY--DnTIk~~~~~~dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-~~~~-----------~~~s  233 (312)
T KOG0645|consen  169 SY--DNTIKVYRDEDDDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-TDLS-----------GMHS  233 (312)
T ss_pred             cc--CCeEEEEeecCCCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCcceEeeeec-cCcc-----------hhcc
Confidence            99  999999998755588999999 8999999999999999999999 99999999876 2211           4567


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc--ccccc-eeecccccccCCccceeeeecceeEEEEcCC-CCEEE
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--CDHSA-RILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLL  343 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~-~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~  343 (432)
                      ..+..+.|. +  ..|++++.|+.|++|.-.....  ..+.+ +.-..|             ...|++++|.|. ...|+
T Consensus       234 r~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH-------------e~dVNsV~w~p~~~~~L~  297 (312)
T KOG0645|consen  234 RALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH-------------EVDVNSVQWNPKVSNRLA  297 (312)
T ss_pred             cceEeeeec-c--cceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc-------------ccccceEEEcCCCCCcee
Confidence            789999998 4  5899999999999998664311  00001 122233             679999999995 55677


Q ss_pred             Ee-eCCeEEEEec
Q 014005          344 SR-DYMNLKVFRY  355 (432)
Q Consensus       344 s~-~~~~i~iwd~  355 (432)
                      +| +||.+++|.+
T Consensus       298 s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  298 SGGDDGIVNFWEL  310 (312)
T ss_pred             ecCCCceEEEEEe
Confidence            76 5599999976

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.98  E-value=1.7e-29  Score=254.59  Aligned_cols=303  Identities=14%  Similarity=0.132  Sum_probs=216.4

Q ss_pred             ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      ....|.+.|.+++|+|+|++||+|+.|+.|+||+.+.......           .        .......+.+ .     
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-----------~--------~~~~~~~~~~-~-----  532 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-----------D--------IHYPVVELAS-R-----  532 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-----------c--------cccceEEecc-c-----
Confidence            3456899999999999999999999999999999764211000           0        0001112222 2     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC-CCcce
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHG  185 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~  185 (432)
                             ..+.+++|.| +++.+|++++.||+|++||+.+++.  +..+..|.           +.|.+++|+| ++.++
T Consensus       533 -------~~v~~l~~~~-~~~~~las~~~Dg~v~lWd~~~~~~--~~~~~~H~-----------~~V~~l~~~p~~~~~L  591 (793)
T PLN00181        533 -------SKLSGICWNS-YIKSQVASSNFEGVVQVWDVARSQL--VTEMKEHE-----------KRVWSIDYSSADPTLL  591 (793)
T ss_pred             -------CceeeEEecc-CCCCEEEEEeCCCeEEEEECCCCeE--EEEecCCC-----------CCEEEEEEcCCCCCEE
Confidence                   6789999952 4578999999999999999987763  33344455           7899999996 67889


Q ss_pred             ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeC-CCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (432)
                      ++++.  |+.|++||++   .+.++..+ .. ...+.++.|+ +++..+++| .|+.|++||++.....+..+       
T Consensus       592 ~Sgs~--Dg~v~iWd~~---~~~~~~~~-~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~-------  657 (793)
T PLN00181        592 ASGSD--DGSVKLWSIN---QGVSIGTI-KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM-------  657 (793)
T ss_pred             EEEcC--CCEEEEEECC---CCcEEEEE-ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe-------
Confidence            99998  9999999998   56677776 33 4678999995 578999999 99999999998433344443       


Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc--ccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~  341 (432)
                      .+|...|.++.|. ++ ..|++++.|+.|++||++.+..  ....+..+.+|             ...+..++|+|++.+
T Consensus       658 ~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh-------------~~~i~~v~~s~~~~~  722 (793)
T PLN00181        658 IGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH-------------TNVKNFVGLSVSDGY  722 (793)
T ss_pred             cCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC-------------CCCeeEEEEcCCCCE
Confidence            7899999999997 55 7899999999999999985321  11125677776             788999999999999


Q ss_pred             EEEeeC-CeEEEEec---CcceeEeecceeeeehhhhh--cccccccccceeeEEEEeecccceeeeec
Q 014005          342 LLSRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQ--HSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       342 l~s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      |++|+. +.|++|+.   .++..+..............  ...+...........+++|+.+|+|++|+
T Consensus       723 lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~  791 (793)
T PLN00181        723 IATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE  791 (793)
T ss_pred             EEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence            999855 99999998   23333322111000000000  01112222222223689999999999997

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.98  E-value=2.9e-31  Score=221.81  Aligned_cols=248  Identities=15%  Similarity=0.176  Sum_probs=212.2

Q ss_pred             cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005           86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN  165 (432)
Q Consensus        86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  165 (432)
                      -+|..++..+.+++|.            +.|.++++  .|.+++|++|+.|++|+|||+.+++++..  +.+|.      
T Consensus       136 eWHapwKl~rVi~gHl------------gWVr~vav--dP~n~wf~tgs~DrtikIwDlatg~Lklt--ltGhi------  193 (460)
T KOG0285|consen  136 EWHAPWKLYRVISGHL------------GWVRSVAV--DPGNEWFATGSADRTIKIWDLATGQLKLT--LTGHI------  193 (460)
T ss_pred             cccCcceehhhhhhcc------------ceEEEEee--CCCceeEEecCCCceeEEEEcccCeEEEe--ecchh------
Confidence            3566788889999999            99999999  88899999999999999999999996543  33444      


Q ss_pred             ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEE
Q 014005          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW  244 (432)
Q Consensus       166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lw  244 (432)
                           ..++.+++++-..|+.+++.  |+.|+.||++   ..+.++.+ .+|-+.|.|++.+|.-+.+++| .|.++++|
T Consensus       194 -----~~vr~vavS~rHpYlFs~ge--dk~VKCwDLe---~nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvW  262 (460)
T KOG0285|consen  194 -----ETVRGVAVSKRHPYLFSAGE--DKQVKCWDLE---YNKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVW  262 (460)
T ss_pred             -----heeeeeeecccCceEEEecC--CCeeEEEech---hhhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEe
Confidence                 78899999999999999999  9999999999   77888888 8999999999999999999999 99999999


Q ss_pred             eCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcccee
Q 014005          245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (432)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~  324 (432)
                      |++ +...+..+       .+|...|.++.+.|.+ ..+++|+.|++|++||++.|+.    ...+..|           
T Consensus       263 DiR-tr~~V~~l-------~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt----~~tlt~h-----------  318 (460)
T KOG0285|consen  263 DIR-TRASVHVL-------SGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKT----MITLTHH-----------  318 (460)
T ss_pred             eec-ccceEEEe-------cCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCce----eEeeecc-----------
Confidence            999 66667665       8999999999999998 7899999999999999999886    5777776           


Q ss_pred             eeecceeEEEEcCCCCEEEEeeCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceee
Q 014005          325 EIIASISDIKFANDGQHLLSRDYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLS  401 (432)
Q Consensus       325 ~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  401 (432)
                        ...|.+++.+|.-..+|+++...|+-|++   ..++.+..|..           -+..+..++. .++++|+.+|.++
T Consensus       319 --kksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~-----------iintl~~nsD-~v~~~G~dng~~~  384 (460)
T KOG0285|consen  319 --KKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNA-----------IINTLSVNSD-GVLVSGGDNGSIM  384 (460)
T ss_pred             --cceeeEEecCCchhhhhccCCccceeccCCccchhhccccccc-----------eeeeeeeccC-ceEEEcCCceEEE
Confidence              78999999999999999988889999999   44455555442           2222222222 2578999999999


Q ss_pred             eec
Q 014005          402 ALS  404 (432)
Q Consensus       402 ~~~  404 (432)
                      .|+
T Consensus       385 fwd  387 (460)
T KOG0285|consen  385 FWD  387 (460)
T ss_pred             EEe
Confidence            999

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=1.4e-30  Score=236.68  Aligned_cols=285  Identities=15%  Similarity=0.173  Sum_probs=232.5

Q ss_pred             cCCCcEEEEEE-cCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           30 QDVDIVSAIEF-DKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        30 ~h~~~V~~~~f-sp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      +..+.|..+.| .|+.++||.+++.+.+|+++..+...                            +.+.||+       
T Consensus       321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c----------------------------~ii~GH~-------  365 (775)
T KOG0319|consen  321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC----------------------------QIIPGHT-------  365 (775)
T ss_pred             CCchhheeeeecCCccceEEEEeCCCceEEEecCCCce----------------------------EEEeCch-------
Confidence            45788999987 46778999999999999998776532                            3789999       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCCCccccccccccccccccccCCCCC-cce
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHG  185 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~  185 (432)
                           +.|.++..  ..+|.+|+||+.|+++++|.++.+.  ...+...++|.           +.|.+++++..+ .++
T Consensus       366 -----e~vlSL~~--~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~-----------~svgava~~~~~asff  427 (775)
T KOG0319|consen  366 -----EAVLSLDV--WSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHT-----------NSVGAVAGSKLGASFF  427 (775)
T ss_pred             -----hheeeeee--cccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccc-----------cccceeeecccCccEE
Confidence                 99999994  4677899999999999999995443  22334445555           788888886553 577


Q ss_pred             ecceeeccceEEEEeecccccce-eeEE----eecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecC
Q 014005          186 YHLEWTENMATKIANVGNSVHAR-CQKV----YPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK  259 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~-~~~~----~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~  259 (432)
                      ++++.  |.++++|++....... +...    ....|+..|++++++|+...+|+| .|.+.++|+++ ......++   
T Consensus       428 vsvS~--D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vL---  501 (775)
T KOG0319|consen  428 VSVSQ--DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVL---  501 (775)
T ss_pred             EEecC--CceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEEe---
Confidence            77777  9999999998521111 1111    125799999999999999999999 99999999999 66777766   


Q ss_pred             CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC
Q 014005          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (432)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg  339 (432)
                          .+|...|+++.|+|.. +++|++|.|++|+||.+.+..-    +++|++|             ...|..+.|-.+|
T Consensus       502 ----sGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fSC----lkT~eGH-------------~~aVlra~F~~~~  559 (775)
T KOG0319|consen  502 ----SGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFSC----LKTFEGH-------------TSAVLRASFIRNG  559 (775)
T ss_pred             ----eCCccceEEEEecccc-ceeEeccCCceEEEEEecccee----eeeecCc-------------cceeEeeeeeeCC
Confidence                9999999999999998 9999999999999999998775    7999998             8999999999999


Q ss_pred             CEEEEe-eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005          340 QHLLSR-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       340 ~~l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                      +.|+|+ +||.+++|++   .+++++..|...+|.....           ...-.++||+.||.|.+|.+.
T Consensus       560 ~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~-----------~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  560 KQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVS-----------PLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             cEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeec-----------CccceeEecCCCeEEEEeecC
Confidence            999996 6699999999   8999999998766654332           112258899999999999954

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=3.5e-31  Score=221.83  Aligned_cols=262  Identities=16%  Similarity=0.246  Sum_probs=222.3

Q ss_pred             hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005            6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS   85 (432)
Q Consensus         6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (432)
                      ++++.-.-|++-.  ++- +...-+|++.|..++|+..|++||+++.|-.+++||.++.                     
T Consensus       127 s~d~tikv~D~~t--g~~-e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~---------------------  182 (406)
T KOG0295|consen  127 SEDATIKVFDTET--GEL-ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF---------------------  182 (406)
T ss_pred             cCCceEEEEEccc--hhh-hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH---------------------
Confidence            3344455555442  111 3345679999999999999999999999988999998873                     


Q ss_pred             cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005           86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN  165 (432)
Q Consensus        86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  165 (432)
                           +++++.+.+|+            ..|.++.|.  |.|.++++++.|.+|+.|++.++-+  +..+..|+      
T Consensus       183 -----~~c~ks~~gh~------------h~vS~V~f~--P~gd~ilS~srD~tik~We~~tg~c--v~t~~~h~------  235 (406)
T KOG0295|consen  183 -----FRCIKSLIGHE------------HGVSSVFFL--PLGDHILSCSRDNTIKAWECDTGYC--VKTFPGHS------  235 (406)
T ss_pred             -----HHHHHHhcCcc------------cceeeEEEE--ecCCeeeecccccceeEEeccccee--EEeccCch------
Confidence                 45667888998            999999994  6789999999999999999999874  44455666      


Q ss_pred             ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC---------------C
Q 014005          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---------------C  230 (432)
Q Consensus       166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~  230 (432)
                           ..+.-++.+.++..+++++.  +.++++|-+.   +.+|...+ ..|...|.+++|-|.               +
T Consensus       236 -----ewvr~v~v~~DGti~As~s~--dqtl~vW~~~---t~~~k~~l-R~hEh~vEci~wap~~~~~~i~~at~~~~~~  304 (406)
T KOG0295|consen  236 -----EWVRMVRVNQDGTIIASCSN--DQTLRVWVVA---TKQCKAEL-REHEHPVECIAWAPESSYPSISEATGSTNGG  304 (406)
T ss_pred             -----HhEEEEEecCCeeEEEecCC--CceEEEEEec---cchhhhhh-hccccceEEEEecccccCcchhhccCCCCCc
Confidence                 68889999999999999998  9999999999   77888888 889999999999753               2


Q ss_pred             CEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccccee
Q 014005          231 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  309 (432)
Q Consensus       231 ~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  309 (432)
                      +++.++ .|++|++||+. ++.++.++       .+|.++|+.++|+|.| ++|+++..|+++++||++.++-    .+.
T Consensus       305 ~~l~s~SrDktIk~wdv~-tg~cL~tL-------~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~c----mk~  371 (406)
T KOG0295|consen  305 QVLGSGSRDKTIKIWDVS-TGMCLFTL-------VGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQC----MKT  371 (406)
T ss_pred             cEEEeecccceEEEEecc-CCeEEEEE-------ecccceeeeeEEcCCC-eEEEEEecCCcEEEEEecccee----eec
Confidence            478888 99999999999 78888876       9999999999999999 9999999999999999998764    677


Q ss_pred             ecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       310 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      +..|             ..-++++.|+.+-.|+++|+- .++++|..
T Consensus       372 ~~ah-------------~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  372 LEAH-------------EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             cCCC-------------cceeEEEecCCCCceEEeccccceeeeeec
Confidence            8886             788999999999999999865 99999963

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=8.2e-30  Score=205.20  Aligned_cols=263  Identities=13%  Similarity=0.140  Sum_probs=213.3

Q ss_pred             CCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (432)
Q Consensus        25 ~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~  104 (432)
                      +.....|..+++.+.|+.+|.+|++++.|.++.+|-..+++.+                           .++.||+   
T Consensus         3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl---------------------------Gty~GHt---   52 (327)
T KOG0643|consen    3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL---------------------------GTYDGHT---   52 (327)
T ss_pred             ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee---------------------------eeecCCC---
Confidence            3456679999999999999999999999999999998777643                           7999999   


Q ss_pred             cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                               +.|+++..  +.+.+.+++|+.|.++++||+++|+........              ..|..+.|+.++.+
T Consensus        53 ---------GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~--------------~~Vk~~~F~~~gn~  107 (327)
T KOG0643|consen   53 ---------GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWKTN--------------SPVKRVDFSFGGNL  107 (327)
T ss_pred             ---------ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEeecC--------------CeeEEEeeccCCcE
Confidence                     99999999  889999999999999999999999855444433              68899999999998


Q ss_pred             eecceeec---cceEEEEeecccc----cceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEe
Q 014005          185 GYHLEWTE---NMATKIANVGNSV----HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV  256 (432)
Q Consensus       185 ~~~~~~~~---~~~v~i~d~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~  256 (432)
                      ++......   .+.|.++|++...    ...+...+ ..+.+.++.+-|.|-++++++| .||.|..||.++..+.+...
T Consensus       108 ~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~  186 (327)
T KOG0643|consen  108 ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSD  186 (327)
T ss_pred             EEEEehhhcCcceEEEEEEccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeech
Confidence            88776533   5589999988543    44556666 6778999999999999999999 99999999999444555433


Q ss_pred             ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccc-c-----cccC------------
Q 014005          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA-A-----ESHG------------  318 (432)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h-~-----~~~~------------  318 (432)
                             ..|...|+.++++|+. .++++++.|.+-++||+++-+.    ++++..- |     ..|.            
T Consensus       187 -------~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v----~Kty~te~PvN~aaisP~~d~VilgGGqeA  254 (327)
T KOG0643|consen  187 -------EEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEV----LKTYTTERPVNTAAISPLLDHVILGGGQEA  254 (327)
T ss_pred             -------hhhccccccccccCCc-ceEEecccCccceeeeccceee----EEEeeecccccceecccccceEEecCCcee
Confidence                   7788899999999999 9999999999999999987543    3333210 0     0010            


Q ss_pred             ----------C--------------ccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          319 ----------S--------------KSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       319 ----------~--------------~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                                +              -....+|.++|++++|+|+|+..++|+. |.|++.-.
T Consensus       255 ~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F  316 (327)
T KOG0643|consen  255 MDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF  316 (327)
T ss_pred             eeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence                      0              0445668999999999999999999754 99998755

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.3e-30  Score=237.69  Aligned_cols=264  Identities=17%  Similarity=0.285  Sum_probs=221.9

Q ss_pred             CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      .+..|..++|+|...+++++-..|.|++||..-+.++                           ..|..|.         
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli---------------------------~rFdeHd---------   51 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI---------------------------DRFDEHD---------   51 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhhhHH---------------------------hhhhccC---------
Confidence            3568999999999999999999999999999876543                           6788898         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                         ++|..+.|  +|.+.+|++|+.|-+|++|+..+.+  .+..+.+|-           ..|+.+.|++.-.++.+++.
T Consensus        52 ---GpVRgv~F--H~~qplFVSGGDDykIkVWnYk~rr--clftL~GHl-----------DYVRt~~FHheyPWIlSASD  113 (1202)
T KOG0292|consen   52 ---GPVRGVDF--HPTQPLFVSGGDDYKIKVWNYKTRR--CLFTLLGHL-----------DYVRTVFFHHEYPWILSASD  113 (1202)
T ss_pred             ---Cccceeee--cCCCCeEEecCCccEEEEEecccce--ehhhhcccc-----------ceeEEeeccCCCceEEEccC
Confidence               99999999  8999999999999999999998877  455566666           78999999999999999999


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceee---------------
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN---------------  254 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~---------------  254 (432)
                        |.+|+||+..   +++|+..+ .+|...|+|.+|+|....++++ -|.+|++||+. .-+...               
T Consensus       114 --DQTIrIWNwq---sr~~iavl-tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis-GLRkk~~~pg~~e~~~~~~~~  186 (1202)
T KOG0292|consen  114 --DQTIRIWNWQ---SRKCIAVL-TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS-GLRKKNKAPGSLEDQMRGQQG  186 (1202)
T ss_pred             --CCeEEEEecc---CCceEEEE-ecCceEEEeeccCCccceEEEecccceEEEEeec-chhccCCCCCCchhhhhcccc
Confidence              9999999999   88999999 8999999999999999999999 89999999985 110000               


Q ss_pred             ---Ee---e-cCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005          255 ---IV---D-MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (432)
Q Consensus       255 ---~~---~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  327 (432)
                         .+   + +-...+++|...|+.++|+|.- .++++|+.|..|++|.+...+..+  +.+..+|             .
T Consensus       187 ~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWE--vDtcrgH-------------~  250 (1202)
T KOG0292|consen  187 NSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWE--VDTCRGH-------------Y  250 (1202)
T ss_pred             chhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEecccccee--ehhhhcc-------------c
Confidence               00   0 0011357899999999999998 899999999999999998655432  5677787             8


Q ss_pred             cceeEEEEcCCCCEEEEe-eCCeEEEEec---CcceeEeecceeeeeh
Q 014005          328 ASISDIKFANDGQHLLSR-DYMNLKVFRY---EPVMTLSFCGIYVWIL  371 (432)
Q Consensus       328 ~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~  371 (432)
                      +.|+++-|+|...+++|. .|++|++||+   ..+++++-....-|+.
T Consensus       251 nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~l  298 (1202)
T KOG0292|consen  251 NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWIL  298 (1202)
T ss_pred             CCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEE
Confidence            999999999998899985 5699999999   6778886655444443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.1e-30  Score=219.47  Aligned_cols=286  Identities=13%  Similarity=0.139  Sum_probs=227.1

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .|+++|+-+.||++|+|||+++.|.+..||++.....                        .+...++.+|.        
T Consensus       222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~------------------------~kl~~tlvgh~--------  269 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH------------------------FKLKKTLVGHS--------  269 (519)
T ss_pred             hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc------------------------eeeeeeeeccc--------
Confidence            6899999999999999999999999999999876542                        34567899999        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                          .+|.-+.|  +||.+++++|+.|..+.+||+.+|......... +.           ..+.+++|.|++..+++|+
T Consensus       270 ----~~V~yi~w--SPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~-~~-----------~S~~sc~W~pDg~~~V~Gs  331 (519)
T KOG0293|consen  270 ----QPVSYIMW--SPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG-LG-----------FSVSSCAWCPDGFRFVTGS  331 (519)
T ss_pred             ----CceEEEEE--CCCCCeEEecCchHheeeccCCcchhhhhcccC-cC-----------CCcceeEEccCCceeEecC
Confidence                99999999  999999999999999999999999865544333 22           5788999999999999999


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      .  |+.+..||++...    ...........|.+++.++||+++++. .|..|++++.+ +......        ..-..
T Consensus       332 ~--dr~i~~wdlDgn~----~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e-~~~dr~l--------ise~~  396 (519)
T KOG0293|consen  332 P--DRTIIMWDLDGNI----LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE-ARVDRGL--------ISEEQ  396 (519)
T ss_pred             C--CCcEEEecCCcch----hhcccccccceeEEEEEcCCCcEEEEEecccceeeechh-hhhhhcc--------ccccC
Confidence            9  9999999997542    222212233569999999999999988 99999999998 3333322        23345


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC-CCCEEEEeeC
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY  347 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~s~~~  347 (432)
                      +|++.+.|.++ +++++.-.+..+++||+...++    ++.+.+|..           ..-+..-+|-- +..++|+|+.
T Consensus       397 ~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~l----v~kY~Ghkq-----------~~fiIrSCFgg~~~~fiaSGSE  460 (519)
T KOG0293|consen  397 PITSFSISKDG-KLALVNLQDQEIHLWDLEENKL----VRKYFGHKQ-----------GHFIIRSCFGGGNDKFIASGSE  460 (519)
T ss_pred             ceeEEEEcCCC-cEEEEEcccCeeEEeecchhhH----HHHhhcccc-----------cceEEEeccCCCCcceEEecCC
Confidence            79999999999 9999999999999999997776    577777621           23455556654 4579999965


Q ss_pred             -CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005          348 -MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       348 -~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                       +.|+||+-   +++.++.+|..          ...|..+.......+++++.||+|+||..+
T Consensus       461 D~kvyIWhr~sgkll~~LsGHs~----------~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  461 DSKVYIWHRISGKLLAVLSGHSK----------TVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             CceEEEEEccCCceeEeecCCcc----------eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence             99999999   89999998863          223333333344468999999999999854

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=3.9e-29  Score=209.71  Aligned_cols=284  Identities=14%  Similarity=0.144  Sum_probs=221.8

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|++.|.+++.+|+.+++|||+.|..-.||++.++...                           ..+.+|+       
T Consensus        61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~---------------------------~eltgHK-------  106 (399)
T KOG0296|consen   61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA---------------------------GELTGHK-------  106 (399)
T ss_pred             hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce---------------------------eEecCCC-------
Confidence            479999999999999999999999999999999998643                           6889999       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           ..|+++.|  +.+|.+||||+.+|.|+||+..++..+......             -+.+.-+.|+|.+..++.|
T Consensus       107 -----DSVt~~~F--shdgtlLATGdmsG~v~v~~~stg~~~~~~~~e-------------~~dieWl~WHp~a~illAG  166 (399)
T KOG0296|consen  107 -----DSVTCCSF--SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE-------------VEDIEWLKWHPRAHILLAG  166 (399)
T ss_pred             -----CceEEEEE--ccCceEEEecCCCccEEEEEcccCceEEEeecc-------------cCceEEEEecccccEEEee
Confidence                 99999999  899999999999999999999988754433211             1567888999999999999


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEee------cCCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD------MKPS  261 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~------~~~~  261 (432)
                      +.  ||.+-+|.+.   .....+.+ .+|..++++=.|.|+|+.++++ .||+|++||.. +++++..+.      ..+.
T Consensus       167 ~~--DGsvWmw~ip---~~~~~kv~-~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~k-tg~p~~~~~~~e~~~~~~~  239 (399)
T KOG0296|consen  167 ST--DGSVWMWQIP---SQALCKVM-SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPK-TGQPLHKITQAEGLELPCI  239 (399)
T ss_pred             cC--CCcEEEEECC---CcceeeEe-cCCCCCcccccccCCCceEEEEecCceEEEEecC-CCceeEEecccccCcCCcc
Confidence            99  9999999998   54666777 8999999999999999999999 99999999998 555554432      0000


Q ss_pred             C--------------------------------------cCCCCcceEEEE---EcCCCCcEEEEEeCCCeEEEEEcccc
Q 014005          262 N--------------------------------------MDDLTEVITSAE---FHPIYCNLLAYSSSRGFVRLVDMRQS  300 (432)
Q Consensus       262 ~--------------------------------------~~~~~~~v~~~~---~~p~~~~~l~~~~~dg~i~iwd~~~~  300 (432)
                      .                                      ...+...+.++.   ++..- .+.|+|+.||+|.|||+...
T Consensus       240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l-pL~A~G~vdG~i~iyD~a~~  318 (399)
T KOG0296|consen  240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL-PLAACGSVDGTIAIYDLAAS  318 (399)
T ss_pred             ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc-chhhcccccceEEEEecccc
Confidence            0                                      001122233333   33344 68899999999999999976


Q ss_pred             ccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec---CcceeEeecceeeeehhhhhc
Q 014005          301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQH  376 (432)
Q Consensus       301 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~  376 (432)
                      ++     +..-.|             ..+|..+.|-+ ..+|+++ .+|.|+.||.   .++.++..|..          
T Consensus       319 ~~-----R~~c~h-------------e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~----------  369 (399)
T KOG0296|consen  319 TL-----RHICEH-------------EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM----------  369 (399)
T ss_pred             hh-----heeccC-------------CCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCch----------
Confidence            64     555555             78899999999 5566664 6699999999   77788888864          


Q ss_pred             ccccccccceeeEEEEeecccceeeeec
Q 014005          377 SRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       377 ~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                       .+.........-.++|+|.|+...||.
T Consensus       370 -~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  370 -GILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             -heeEEEEcCCCcEEEEecCCCeEEEEe
Confidence             222211112223589999999999886

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.1e-29  Score=230.96  Aligned_cols=273  Identities=15%  Similarity=0.191  Sum_probs=222.6

Q ss_pred             cccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccccc
Q 014005            9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH   88 (432)
Q Consensus         9 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (432)
                      +++++.|+-.+.+... .-..+|++.|.+++...+|.+|+||+.|.++++|.++++...                     
T Consensus       343 TNs~~lr~y~~~~~~c-~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~---------------------  400 (775)
T KOG0319|consen  343 TNSPELRLYTLPTSYC-QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK---------------------  400 (775)
T ss_pred             eCCCceEEEecCCCce-EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch---------------------
Confidence            4555555553333221 244589999999997778899999999999999999554321                     


Q ss_pred             CCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeee-eecCCCCcccccccc
Q 014005           89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTL  167 (432)
Q Consensus        89 p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~  167 (432)
                        ..++....+|+            ..|.+++++ .-....|+++|.|.++++|++...+.... ..+     .++-...
T Consensus       401 --~~~~a~~~gH~------------~svgava~~-~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~-----~~~~t~~  460 (775)
T KOG0319|consen  401 --SLCVAQANGHT------------NSVGAVAGS-KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL-----TCRYTER  460 (775)
T ss_pred             --hhhhhhhcccc------------cccceeeec-ccCccEEEEecCCceEEEecCCCccccccccee-----hhhHHHH
Confidence              23456778899            999999994 23446899999999999999976321111 001     0111222


Q ss_pred             ccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 014005          168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  246 (432)
Q Consensus       168 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~  246 (432)
                      ..+..|.+++.+|+.+.+++|+.  |.+.+||+++   ......++ .+|+..+.++.|+|..+.++++ .|++|+||.+
T Consensus       461 aHdKdIN~Vaia~ndkLiAT~Sq--DktaKiW~le---~~~l~~vL-sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i  534 (775)
T KOG0319|consen  461 AHDKDINCVAIAPNDKLIATGSQ--DKTAKIWDLE---QLRLLGVL-SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSI  534 (775)
T ss_pred             hhcccccceEecCCCceEEeccc--ccceeeeccc---CceEEEEe-eCCccceEEEEeccccceeEeccCCceEEEEEe
Confidence            34588999999999999999999  9999999999   77888888 8999999999999999999999 9999999999


Q ss_pred             CCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeee
Q 014005          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (432)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  326 (432)
                      . +..|++++       .+|...|..+.|-.++ ..|++|+.||.|++|++.++. |   .+++..|             
T Consensus       535 s-~fSClkT~-------eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~e-C---~~tlD~H-------------  588 (775)
T KOG0319|consen  535 S-TFSCLKTF-------EGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNE-C---EMTLDAH-------------  588 (775)
T ss_pred             c-cceeeeee-------cCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchh-h---hhhhhhc-------------
Confidence            9 88999987       9999999999999999 999999999999999999876 4   6899998             


Q ss_pred             ecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          327 IASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       327 ~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                      ...|++++.+|++.++++| +||.|.+|.=
T Consensus       589 ~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD  618 (775)
T KOG0319|consen  589 NDRVWALSVSPLLDMFVTGGGDGRIIFWKD  618 (775)
T ss_pred             cceeEEEeecCccceeEecCCCeEEEEeec
Confidence            8999999999999999986 6699999954

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=3.5e-29  Score=234.97  Aligned_cols=243  Identities=17%  Similarity=0.301  Sum_probs=204.8

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      .+|...|++++|+|+|+++++|+.|++|+|||+...                          ...++++.+|.       
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~--------------------------~~~~~~l~gH~-------  246 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD--------------------------GRNLKTLKGHS-------  246 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCC--------------------------CeEEEEecCCC-------
Confidence            579999999999999999999999999999999432                          23568899999       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           ..|++++|  +|+++++++|+.|++|++||++++++.  ..+..|.           +.|..++|++++.+++++
T Consensus       247 -----~~v~~~~f--~p~g~~i~Sgs~D~tvriWd~~~~~~~--~~l~~hs-----------~~is~~~f~~d~~~l~s~  306 (456)
T KOG0266|consen  247 -----TYVTSVAF--SPDGNLLVSGSDDGTVRIWDVRTGECV--RKLKGHS-----------DGISGLAFSPDGNLLVSA  306 (456)
T ss_pred             -----CceEEEEe--cCCCCEEEEecCCCcEEEEeccCCeEE--EeeeccC-----------CceEEEEECCCCCEEEEc
Confidence                 99999999  899999999999999999999997743  3444555           789999999999999999


Q ss_pred             eeeccceEEEEeecccccce--eeEEeecCCCC--CeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005          189 EWTENMATKIANVGNSVHAR--CQKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~--~~~~~~~~~~~--~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (432)
                      +.  |+.+++||+.   .+.  +...+ .++..  .+++++|+|++.+++++ .|+.+++||++ ...+...+       
T Consensus       307 s~--d~~i~vwd~~---~~~~~~~~~~-~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~-~~~~~~~~-------  372 (456)
T KOG0266|consen  307 SY--DGTIRVWDLE---TGSKLCLKLL-SGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR-SGKSVGTY-------  372 (456)
T ss_pred             CC--CccEEEEECC---CCceeeeecc-cCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc-CCcceeee-------
Confidence            88  9999999999   445  55666 44444  49999999999999999 99999999999 66666665       


Q ss_pred             CCCCc---ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005          264 DDLTE---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (432)
Q Consensus       264 ~~~~~---~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~  340 (432)
                      .+|..   .+.+...++.+ .++++|+.|+.|++||+.++..    +..+.+|.            ...+..+.++|...
T Consensus       373 ~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~~----~~~l~~h~------------~~~~~~~~~~~~~~  435 (456)
T KOG0266|consen  373 TGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGGI----LQRLEGHS------------KAAVSDLSSHPTEN  435 (456)
T ss_pred             cccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccch----hhhhcCCC------------CCceeccccCCCcC
Confidence            55555   34455567787 9999999999999999998765    57777751            46889999999999


Q ss_pred             EEEEee---CCeEEEEec
Q 014005          341 HLLSRD---YMNLKVFRY  355 (432)
Q Consensus       341 ~l~s~~---~~~i~iwd~  355 (432)
                      ++++++   |+.+++|..
T Consensus       436 ~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  436 LIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             eeeecCcCCCceEEEecC
Confidence            999954   599999965

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=3e-30  Score=213.24  Aligned_cols=291  Identities=14%  Similarity=0.215  Sum_probs=226.3

Q ss_pred             CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      ....+-|..|||||+||++|+.||-|.+|+..+++.-+       .+            .|.....|.-+.         
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrK-------DL------------kYQAqd~fMMmd---------  263 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRK-------DL------------KYQAQDNFMMMD---------  263 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhh-------hh------------hhhhhcceeecc---------
Confidence            35678899999999999999999999999999887431       11            011112233344         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                         ..|.|+.|  +.|..++++|+.||.|++|.+++|.+.+.... .|.           ..|.++.|+.++..+.++++
T Consensus       264 ---~aVlci~F--SRDsEMlAsGsqDGkIKvWri~tG~ClRrFdr-AHt-----------kGvt~l~FSrD~SqiLS~sf  326 (508)
T KOG0275|consen  264 ---DAVLCISF--SRDSEMLASGSQDGKIKVWRIETGQCLRRFDR-AHT-----------KGVTCLSFSRDNSQILSASF  326 (508)
T ss_pred             ---cceEEEee--cccHHHhhccCcCCcEEEEEEecchHHHHhhh-hhc-----------cCeeEEEEccCcchhhcccc
Confidence               89999999  89999999999999999999999985433221 223           68999999999999999999


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                        |.++++.-+.   .+++++.+ .+|.+.|+...|.++|..++++ .||+|++|+.. +..|+.++..     .+...+
T Consensus       327 --D~tvRiHGlK---SGK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K-tteC~~Tfk~-----~~~d~~  394 (508)
T KOG0275|consen  327 --DQTVRIHGLK---SGKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK-TTECLSTFKP-----LGTDYP  394 (508)
T ss_pred             --cceEEEeccc---cchhHHHh-cCccccccceEEcCCCCeEEEecCCccEEEecCc-chhhhhhccC-----CCCccc
Confidence              9999999998   89999999 9999999999999999999999 99999999999 7888888722     345567


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-eeCC
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYM  348 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~~  348 (432)
                      |+++..-|.++..+++|...++|.|.++. |+.    ++.|..- . ..        .+...+.+.||.|.++.+ |.|+
T Consensus       395 vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQv----VrsfsSG-k-RE--------gGdFi~~~lSpkGewiYcigED~  459 (508)
T KOG0275|consen  395 VNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQV----VRSFSSG-K-RE--------GGDFINAILSPKGEWIYCIGEDG  459 (508)
T ss_pred             ceeEEEcCCCCceEEEEcCCCeEEEEecc-ceE----EeeeccC-C-cc--------CCceEEEEecCCCcEEEEEccCc
Confidence            99999999888899999999999999987 554    4666541 0 00        245567788999999988 5779


Q ss_pred             eEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          349 NLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       349 ~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      .++.|.+   +...++.+|+..+.-.           .-..-.-++++=+.||.+++|.
T Consensus       460 vlYCF~~~sG~LE~tl~VhEkdvIGl-----------~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  460 VLYCFSVLSGKLERTLPVHEKDVIGL-----------THHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEEEEEeecCceeeeeeccccccccc-----------ccCcccchhhhhcccchhhhcC
Confidence            9999999   6667777776411100           0011111355556778888774

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=2.2e-29  Score=212.15  Aligned_cols=291  Identities=18%  Similarity=0.223  Sum_probs=223.2

Q ss_pred             CCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCC
Q 014005           22 ERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE  101 (432)
Q Consensus        22 ~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~  101 (432)
                      .......+.|.+.|.++...  ++++++|++||.+++||..+.                            ...++.||.
T Consensus        95 aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk----------------------------~~~~~~Ght  144 (423)
T KOG0313|consen   95 APKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK----------------------------SIKTIVGHT  144 (423)
T ss_pred             CCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc----------------------------eEEEEecCC
Confidence            33445567899999999987  789999999999999998765                            346889999


Q ss_pred             ccccccchhhhhcceeEEEEEE-cCCCCEEEEEeCCCeEEEEEccCccee--eeeecCCCCccccccccccccccccccC
Q 014005          102 PEFDYLKSLEIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVK--KIKEMDHFPFVSSENTLLAEKNFMNEHN  178 (432)
Q Consensus       102 ~~~~~~~~~~~~~~v~~l~~~~-s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~  178 (432)
                                  ++|.+++|.. ++....|++++.|.++++|..+.+...  ....-.+|.           ..|.++..
T Consensus       145 ------------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk-----------~~V~sVsv  201 (423)
T KOG0313|consen  145 ------------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK-----------RSVDSVSV  201 (423)
T ss_pred             ------------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc-----------cceeEEEe
Confidence                        9999888853 222346999999999999999876532  222223555           78999999


Q ss_pred             CCCCcceecceeeccceEEEEeeccc----------------------ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE
Q 014005          179 PPSFAHGYHLEWTENMATKIANVGNS----------------------VHARCQKVYPHAHDFNINSISNNSDCETFVSA  236 (432)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~i~d~~~~----------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  236 (432)
                      .+++..+.+|+.  |..+++|+....                      ..+.++-++ .+|...|.++.|++. ..+.++
T Consensus       202 ~~sgtr~~SgS~--D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl-~GHt~~Vs~V~w~d~-~v~yS~  277 (423)
T KOG0313|consen  202 DSSGTRFCSGSW--DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL-EGHTEPVSSVVWSDA-TVIYSV  277 (423)
T ss_pred             cCCCCeEEeecc--cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe-cccccceeeEEEcCC-CceEee
Confidence            999999999999  999999993211                      122345556 799999999999984 456666


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccc
Q 014005          237 -DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE  315 (432)
Q Consensus       237 -~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~  315 (432)
                       .|.+|+.||+. .+.....+        .-...++++..+|.. ++|++|+.|..+++||.|++.- .-....|.+|  
T Consensus       278 SwDHTIk~WDle-tg~~~~~~--------~~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~g-s~v~~s~~gH--  344 (423)
T KOG0313|consen  278 SWDHTIKVWDLE-TGGLKSTL--------TTNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDG-SVVSQSLIGH--  344 (423)
T ss_pred             cccceEEEEEee-cccceeee--------ecCcceeEeeccccc-ceeeecCCCCceeecCCCCCCC-ceeEEeeecc--
Confidence             99999999999 45544432        234568999999987 9999999999999999997642 1124667776  


Q ss_pred             ccCCccceeeeecceeEEEEcCCCCEE-EEeeC-CeEEEEec----CcceeEeecceeeeehhhhhcccccccccceeeE
Q 014005          316 SHGSKSFFTEIIASISDIKFANDGQHL-LSRDY-MNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVI  389 (432)
Q Consensus       316 ~~~~~~~~~~~~~~v~~~~~s~dg~~l-~s~~~-~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (432)
                                 .++|.++.|+|...++ ++|+. +++++||+    .++..+..|..          .-++..+  ....
T Consensus       345 -----------~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D----------Kvl~vdW--~~~~  401 (423)
T KOG0313|consen  345 -----------KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND----------KVLSVDW--NEGG  401 (423)
T ss_pred             -----------hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc----------eEEEEec--cCCc
Confidence                       8999999999987665 55655 99999999    48888888754          1222222  1234


Q ss_pred             EEEeecccceeeeecc
Q 014005          390 YIITTLYLINLSALSA  405 (432)
Q Consensus       390 ~~~~g~~~~~i~~~~~  405 (432)
                      +|++|+.|+++.|+..
T Consensus       402 ~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  402 LIVSGGADNKLRIFKG  417 (423)
T ss_pred             eEEeccCcceEEEecc
Confidence            6999999999999984

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=4.2e-29  Score=204.39  Aligned_cols=263  Identities=14%  Similarity=0.154  Sum_probs=214.3

Q ss_pred             cchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccc
Q 014005            3 LNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMD   82 (432)
Q Consensus         3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   82 (432)
                      .++..+.+...|...+...  .-...-.|+++|+.+.|.+++..|++++.|.+++.||.++++..               
T Consensus        63 aSgG~Dr~I~LWnv~gdce--N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~---------------  125 (338)
T KOG0265|consen   63 ASGGSDRAIVLWNVYGDCE--NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRI---------------  125 (338)
T ss_pred             eecCCcceEEEEecccccc--ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceee---------------
Confidence            4557778888998654322  23334489999999999999999999999999999999998744               


Q ss_pred             ccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcc
Q 014005           83 FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFV  161 (432)
Q Consensus        83 ~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  161 (432)
                                  ..+++|.            .-|+.+.-  ..- -.++.+++.|+++++||++.+...+....      
T Consensus       126 ------------rk~k~h~------------~~vNs~~p--~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~------  173 (338)
T KOG0265|consen  126 ------------RKHKGHT------------SFVNSLDP--SRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN------  173 (338)
T ss_pred             ------------ehhcccc------------ceeeecCc--cccCCeEEEecCCCceEEEEeecccchhhcccc------
Confidence                        6788898            77888774  433 45677889999999999997764433221      


Q ss_pred             ccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe
Q 014005          162 SSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR  240 (432)
Q Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~  240 (432)
                              ...+.++.|..++..+.+|+.  |+.|++||++   ...+..++ .+|.+.|+.+..+|+|.++.+- .|.+
T Consensus       174 --------kyqltAv~f~d~s~qv~sggI--dn~ikvWd~r---~~d~~~~l-sGh~DtIt~lsls~~gs~llsnsMd~t  239 (338)
T KOG0265|consen  174 --------KYQLTAVGFKDTSDQVISGGI--DNDIKVWDLR---KNDGLYTL-SGHADTITGLSLSRYGSFLLSNSMDNT  239 (338)
T ss_pred             --------ceeEEEEEecccccceeeccc--cCceeeeccc---cCcceEEe-ecccCceeeEEeccCCCccccccccce
Confidence                    256888999999999999999  9999999998   77788888 8999999999999999999998 9999


Q ss_pred             EEEEeCCC---CCceeeEeecCCCCcCCCC----cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccc
Q 014005          241 INLWNLEI---SDQCFNIVDMKPSNMDDLT----EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA  313 (432)
Q Consensus       241 i~lwd~~~---~~~~~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h  313 (432)
                      +++||++-   ..+++.++       .+|.    .....++|+|++ ..+.+|+.|..+++||..+...    +..+.+|
T Consensus       240 vrvwd~rp~~p~~R~v~if-------~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~~----lyklpGh  307 (338)
T KOG0265|consen  240 VRVWDVRPFAPSQRCVKIF-------QGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRRI----LYKLPGH  307 (338)
T ss_pred             EEEEEecccCCCCceEEEe-------ecchhhhhhhcceeeccCCC-CccccccccceEEEeecccccE----EEEcCCc
Confidence            99999972   12346665       3332    234577899999 9999999999999999887665    6888887


Q ss_pred             ccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEE
Q 014005          314 AESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVF  353 (432)
Q Consensus       314 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iw  353 (432)
                                   .+.|..++|+|...+|.++ +|.+|++=
T Consensus       308 -------------~gsvn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  308 -------------YGSVNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             -------------ceeEEEeeecCCCcEEEEeccCceeEee
Confidence                         8999999999999999986 66888763

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=3.2e-28  Score=213.31  Aligned_cols=286  Identities=10%  Similarity=0.116  Sum_probs=210.4

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchh-------hhcccccc-ccccC--------Cc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSE-------LEKQMDFT-STSHP--------EY   91 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~p--------~~   91 (432)
                      ...|++.|.+++|+||++.++|++.|.+++|||+.+.++.+...-....       +=+.+..+ ++..+        ..
T Consensus       231 ~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~  310 (603)
T KOG0318|consen  231 SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP  310 (603)
T ss_pred             CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC
Confidence            4579999999999999999999999999999999988765432222111       11122222 22222        23


Q ss_pred             ceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeee---------ecCCCC--c
Q 014005           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK---------EMDHFP--F  160 (432)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------~~~~~~--~  160 (432)
                      .....+.||.            +.|+++..  ++++.+|++|+.||.|.-|+..++..-++.         .+....  +
T Consensus       311 ~~~~~i~GHn------------K~ITaLtv--~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~  376 (603)
T KOG0318|consen  311 SVLKVISGHN------------KSITALTV--SPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE  376 (603)
T ss_pred             Chhheecccc------------cceeEEEE--cCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc
Confidence            4677889999            99999999  899999999999999999998765432221         000000  0


Q ss_pred             cc---------------------------------------------------------cccccccccccccccCCCCCc
Q 014005          161 VS---------------------------------------------------------SENTLLAEKNFMNEHNPPSFA  183 (432)
Q Consensus       161 ~~---------------------------------------------------------~~~~~~~~~~i~~~~~~~~~~  183 (432)
                      +.                                                         .+......-...+++.+|++.
T Consensus       377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~  456 (603)
T KOG0318|consen  377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS  456 (603)
T ss_pred             EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC
Confidence            00                                                         000001123344677788888


Q ss_pred             ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (432)
                      .++.|+.  |+.+++|.+..... ...... ..|.+.|++++++||+.+||++ ..+.+.+||+. ..+. +     ...
T Consensus       457 ~vaVGG~--Dgkvhvysl~g~~l-~ee~~~-~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~-s~~~-~-----~~~  525 (603)
T KOG0318|consen  457 EVAVGGQ--DGKVHVYSLSGDEL-KEEAKL-LEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVA-SREV-K-----TNR  525 (603)
T ss_pred             EEEEecc--cceEEEEEecCCcc-cceeee-ecccCCceEEEECCCCcEEEEeccCCcEEEEEcc-cCce-e-----cce
Confidence            9999988  99999999986432 222223 5899999999999999999999 89999999999 4433 2     123


Q ss_pred             cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (432)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  342 (432)
                      +.-|++.|.+++|+|++ .++|+|+.|-.|.||++.....   .+.....|             ...|+.+.|-.+...+
T Consensus       526 w~FHtakI~~~aWsP~n-~~vATGSlDt~Viiysv~kP~~---~i~iknAH-------------~~gVn~v~wlde~tvv  588 (603)
T KOG0318|consen  526 WAFHTAKINCVAWSPNN-KLVATGSLDTNVIIYSVKKPAK---HIIIKNAH-------------LGGVNSVAWLDESTVV  588 (603)
T ss_pred             eeeeeeeEEEEEeCCCc-eEEEeccccceEEEEEccChhh---heEecccc-------------ccCceeEEEecCceEE
Confidence            46799999999999998 9999999999999999985332   24455555             5679999999888777


Q ss_pred             EEeeCCeEEEEec
Q 014005          343 LSRDYMNLKVFRY  355 (432)
Q Consensus       343 ~s~~~~~i~iwd~  355 (432)
                      -+|.|..|++|++
T Consensus       589 SsG~Da~iK~W~v  601 (603)
T KOG0318|consen  589 SSGQDANIKVWNV  601 (603)
T ss_pred             eccCcceeEEecc
Confidence            7788899999986

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=9.5e-30  Score=213.14  Aligned_cols=290  Identities=18%  Similarity=0.204  Sum_probs=222.3

Q ss_pred             hhhhhhcCCCCCccccCCCcEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcce
Q 014005           15 KCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRY   93 (432)
Q Consensus        15 ~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~   93 (432)
                      |+-..|.......+-+|.+.|.|++=+|.. ..+|+|+.||.|+|||+....                           +
T Consensus        49 KleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~---------------------------~  101 (433)
T KOG0268|consen   49 KLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE---------------------------C  101 (433)
T ss_pred             HHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh---------------------------h
Confidence            555677777777788999999999999977 679999999999999998865                           3


Q ss_pred             eeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccc
Q 014005           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (432)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  173 (432)
                      ..+++.|.            +.|..|++  +.  ..+++++.|++|+.|.+.......               ...++.+
T Consensus       102 ~~~f~AH~------------G~V~Gi~v--~~--~~~~tvgdDKtvK~wk~~~~p~~t---------------ilg~s~~  150 (433)
T KOG0268|consen  102 IRTFKAHE------------GLVRGICV--TQ--TSFFTVGDDKTVKQWKIDGPPLHT---------------ILGKSVY  150 (433)
T ss_pred             hheeeccc------------CceeeEEe--cc--cceEEecCCcceeeeeccCCccee---------------eeccccc
Confidence            47899999            99999999  43  678999999999999988642211               1223556


Q ss_pred             ccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCc
Q 014005          174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQ  251 (432)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~  251 (432)
                      ..+.-+......++++.    .|.|||.+   ...+++.+ ....+.|.++.|+|... .|+++ .|+.|.+||++ ...
T Consensus       151 ~gIdh~~~~~~FaTcGe----~i~IWD~~---R~~Pv~sm-swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R-~~~  221 (433)
T KOG0268|consen  151 LGIDHHRKNSVFATCGE----QIDIWDEQ---RDNPVSSM-SWGADSISSVKFNPVETSILASCASDRSIVLYDLR-QAS  221 (433)
T ss_pred             cccccccccccccccCc----eeeecccc---cCCcccee-ecCCCceeEEecCCCcchheeeeccCCceEEEecc-cCC
Confidence            66666666666666543    78999998   66788888 66777899999999755 45566 99999999999 566


Q ss_pred             eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeeccee
Q 014005          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (432)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~  331 (432)
                      +++.+-        ..-.-+.++|+|.+ -.|.+|++|..++.||++.-+..   +....+|             .+.|.
T Consensus       222 Pl~KVi--------~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p---~~v~~dh-------------vsAV~  276 (433)
T KOG0268|consen  222 PLKKVI--------LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRP---LNVHKDH-------------VSAVM  276 (433)
T ss_pred             ccceee--------eeccccceecCccc-cceeeccccccceehhhhhhccc---chhhccc-------------ceeEE
Confidence            655431        12234679999976 88999999999999999975443   6777776             88999


Q ss_pred             EEEEcCCCCEEEEeeC-CeEEEEec--CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          332 DIKFANDGQHLLSRDY-MNLKVFRY--EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       332 ~~~~s~dg~~l~s~~~-~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      +++|||.|+-+++|+. .+|+||.+  ..-+.+.       ....+ +..+|..|..+. .||++||+|++|.+|..
T Consensus       277 dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY-------htkRM-q~V~~Vk~S~Ds-kyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  277 DVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY-------HTKRM-QHVFCVKYSMDS-KYIISGSDDGNVRLWKA  344 (433)
T ss_pred             EeccCCCcchhccccccceEEEeecCCCcchhhh-------hHhhh-heeeEEEEeccc-cEEEecCCCcceeeeec
Confidence            9999999999999976 99999998  1111111       11112 345565554443 46999999999999994

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.1e-28  Score=197.25  Aligned_cols=239  Identities=15%  Similarity=0.207  Sum_probs=188.2

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC-cceecceeec
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~  192 (432)
                      +.+..++|+++ ..+.+++++.||++++||+... ...+..++.|.           ..|.++.|++.. ..+++++.  
T Consensus        61 D~LfdV~Wse~-~e~~~~~a~GDGSLrl~d~~~~-s~Pi~~~kEH~-----------~EV~Svdwn~~~r~~~ltsSW--  125 (311)
T KOG0277|consen   61 DGLFDVAWSEN-HENQVIAASGDGSLRLFDLTMP-SKPIHKFKEHK-----------REVYSVDWNTVRRRIFLTSSW--  125 (311)
T ss_pred             cceeEeeecCC-CcceEEEEecCceEEEeccCCC-CcchhHHHhhh-----------hheEEeccccccceeEEeecc--
Confidence            78999999643 3457888899999999995432 33455555555           788999998764 45556677  


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                      |++|++|+..   ..+.++++ .+|...|...+|+|. .+.++++ .|+.+++||++..++.+. +       +.|...|
T Consensus       126 D~TiKLW~~~---r~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i-------~ah~~Ei  193 (311)
T KOG0277|consen  126 DGTIKLWDPN---RPNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-I-------EAHNSEI  193 (311)
T ss_pred             CCceEeecCC---CCcceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-E-------Eecccee
Confidence            9999999998   77888889 899999999999996 5667777 999999999997776655 3       7899999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC-CEEEEeeC-C
Q 014005          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-M  348 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~s~~~-~  348 (432)
                      .++.|+..+.++|++|+.|+.|+.||+|.-+..   +..+.+|             .-.|..++|||.. ..||++++ -
T Consensus       194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p---l~eL~gh-------------~~AVRkvk~Sph~~~lLaSasYDm  257 (311)
T KOG0277|consen  194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP---LFELNGH-------------GLAVRKVKFSPHHASLLASASYDM  257 (311)
T ss_pred             EeecccccCCcEEEecCCCceEEEEehhhcccc---ceeecCC-------------ceEEEEEecCcchhhHhhhccccc
Confidence            999999877799999999999999999986653   6777887             7899999999974 57788877 9


Q ss_pred             eEEEEec----CcceeEeecceeeeehhhhhccccccccc-ceeeEEEEeecccceeeeeccC
Q 014005          349 NLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYA-LSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       349 ~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                      +++|||.    ..+.++..|..           -.|.+-. .-...++++.+.|..++||+.+
T Consensus       258 T~riw~~~~~ds~~e~~~~HtE-----------Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p~  309 (311)
T KOG0277|consen  258 TVRIWDPERQDSAIETVDHHTE-----------FVCGLDWSLFDPGQVASTGWDELLYVWNPG  309 (311)
T ss_pred             eEEecccccchhhhhhhhccce-----------EEeccccccccCceeeecccccceeeeccc
Confidence            9999999    45556665554           1222111 1134478999999999999854

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.7e-28  Score=225.82  Aligned_cols=267  Identities=14%  Similarity=0.216  Sum_probs=217.4

Q ss_pred             hhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc
Q 014005            5 REEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT   84 (432)
Q Consensus         5 ~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   84 (432)
                      +-.+.-.-.|++.=..-   ..+-..|.++|..+.|+|++.++++|+.|..|++|+..+.+                   
T Consensus        27 slHsG~IQlWDYRM~tl---i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr-------------------   84 (1202)
T KOG0292|consen   27 SLHSGVIQLWDYRMGTL---IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR-------------------   84 (1202)
T ss_pred             eecCceeeeehhhhhhH---HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce-------------------
Confidence            33344455677662211   12234789999999999999999999999999999998866                   


Q ss_pred             ccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccc
Q 014005           85 STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE  164 (432)
Q Consensus        85 ~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  164 (432)
                              ++.++.||-            +.|..+.|  ++.-.+++++|.|.+|+||+..++++..+  +.+|.     
T Consensus        85 --------clftL~GHl------------DYVRt~~F--HheyPWIlSASDDQTIrIWNwqsr~~iav--ltGHn-----  135 (1202)
T KOG0292|consen   85 --------CLFTLLGHL------------DYVRTVFF--HHEYPWILSASDDQTIRIWNWQSRKCIAV--LTGHN-----  135 (1202)
T ss_pred             --------ehhhhcccc------------ceeEEeec--cCCCceEEEccCCCeEEEEeccCCceEEE--EecCc-----
Confidence                    557899999            89999999  88999999999999999999999885443  44444     


Q ss_pred             cccccccccccccCCCCCcceecceeeccceEEEEeecccc--------------------------cceeeEEeecCCC
Q 014005          165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV--------------------------HARCQKVYPHAHD  218 (432)
Q Consensus       165 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~--------------------------~~~~~~~~~~~~~  218 (432)
                            ..|.+.+|+|....+++++.  |.+|++||+..-.                          .......+ .+|+
T Consensus       136 ------HYVMcAqFhptEDlIVSaSL--DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL-EGHD  206 (1202)
T KOG0292|consen  136 ------HYVMCAQFHPTEDLIVSASL--DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL-EGHD  206 (1202)
T ss_pred             ------eEEEeeccCCccceEEEecc--cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee-cccc
Confidence                  67999999999999999999  9999999975311                          01122334 7999


Q ss_pred             CCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005          219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (432)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~  297 (432)
                      ..|+.++|+|.-..+++| +|..|++|.+. ..+..+.     .+..+|.+.|.++-|+|.. .++++.+.|++|++||+
T Consensus       207 RGVNwaAfhpTlpliVSG~DDRqVKlWrmn-etKaWEv-----DtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm  279 (1202)
T KOG0292|consen  207 RGVNWAAFHPTLPLIVSGADDRQVKLWRMN-ETKAWEV-----DTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDM  279 (1202)
T ss_pred             cccceEEecCCcceEEecCCcceeeEEEec-cccceee-----hhhhcccCCcceEEecCcc-ceeEecCCCccEEEEec
Confidence            999999999999999999 99999999998 3332221     2458999999999999998 99999999999999999


Q ss_pred             cccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                      .+.+.    +++|+.-             ...-+.++-+|...++|+|-|+-+.+|.+
T Consensus       280 ~kRt~----v~tfrre-------------ndRFW~laahP~lNLfAAgHDsGm~VFkl  320 (1202)
T KOG0292|consen  280 TKRTS----VQTFRRE-------------NDRFWILAAHPELNLFAAGHDSGMIVFKL  320 (1202)
T ss_pred             ccccc----eeeeecc-------------CCeEEEEEecCCcceeeeecCCceEEEEE
Confidence            98765    5777541             36778899999999999998877888888

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=6.1e-28  Score=202.57  Aligned_cols=254  Identities=19%  Similarity=0.245  Sum_probs=196.6

Q ss_pred             cchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCC
Q 014005           11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE   90 (432)
Q Consensus        11 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   90 (432)
                      -..|+.++  ++ ...+...|++.|+|+.|+.+|.+||||+.+|.|+||+..++...                       
T Consensus        88 AflW~~~~--ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~-----------------------  141 (399)
T KOG0296|consen   88 AFLWDIST--GE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ-----------------------  141 (399)
T ss_pred             EEEEEccC--Cc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE-----------------------
Confidence            34676665  44 56777899999999999999999999999999999999987632                       


Q ss_pred             cceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCcccccccccc
Q 014005           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLA  169 (432)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~  169 (432)
                          ..+..--            ..+.=+.|  +|.+..|+.|+.||.+-.|.+..+. ++.   +.+|.          
T Consensus       142 ----~~~~~e~------------~dieWl~W--Hp~a~illAG~~DGsvWmw~ip~~~~~kv---~~Gh~----------  190 (399)
T KOG0296|consen  142 ----WKLDQEV------------EDIEWLKW--HPRAHILLAGSTDGSVWMWQIPSQALCKV---MSGHN----------  190 (399)
T ss_pred             ----EEeeccc------------CceEEEEe--cccccEEEeecCCCcEEEEECCCcceeeE---ecCCC----------
Confidence                2232222            45666788  8899999999999999999998753 333   33344          


Q ss_pred             ccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecC---------------------------------
Q 014005          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHA---------------------------------  216 (432)
Q Consensus       170 ~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~---------------------------------  216 (432)
                       .++.+=.|.|+|+.+.++..  ||+|++|++.   +++++..+...                                 
T Consensus       191 -~~ct~G~f~pdGKr~~tgy~--dgti~~Wn~k---tg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s  264 (399)
T KOG0296|consen  191 -SPCTCGEFIPDGKRILTGYD--DGTIIVWNPK---TGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS  264 (399)
T ss_pred             -CCcccccccCCCceEEEEec--CceEEEEecC---CCceeEEecccccCcCCccccccccceeEeccCCccEEEEcccc
Confidence             77888899999999999999  9999999998   55554444210                                 


Q ss_pred             -----------------CCCCeeE---EEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEE
Q 014005          217 -----------------HDFNINS---ISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  275 (432)
Q Consensus       217 -----------------~~~~i~~---~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  275 (432)
                                       +...+.+   +.++..=++.|+| -||+|.|||+.  ...++..       -.|...|..+.|
T Consensus       265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a--~~~~R~~-------c~he~~V~~l~w  335 (399)
T KOG0296|consen  265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLA--ASTLRHI-------CEHEDGVTKLKW  335 (399)
T ss_pred             ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecc--cchhhee-------ccCCCceEEEEE
Confidence                             0111111   2222223366778 89999999998  2333322       578888999999


Q ss_pred             cCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEe
Q 014005          276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFR  354 (432)
Q Consensus       276 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd  354 (432)
                      -+ . .+|++++.+|.|++||.|+|++    +..+.+|             ...|.+++.+|++++++++++ ++.++|+
T Consensus       336 ~~-t-~~l~t~c~~g~v~~wDaRtG~l----~~~y~GH-------------~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  336 LN-T-DYLLTACANGKVRQWDARTGQL----KFTYTGH-------------QMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             cC-c-chheeeccCceEEeeeccccce----EEEEecC-------------chheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence            99 4 7899999999999999999997    6888997             899999999999999999755 9999997


Q ss_pred             c
Q 014005          355 Y  355 (432)
Q Consensus       355 ~  355 (432)
                      +
T Consensus       397 v  397 (399)
T KOG0296|consen  397 V  397 (399)
T ss_pred             c
Confidence            6

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.7e-28  Score=219.16  Aligned_cols=237  Identities=17%  Similarity=0.203  Sum_probs=206.9

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      .+|-++.+  +|...+++.+-..|.|.||+.++..+.+.....             +-+|+...|-....++++|+.  |
T Consensus        14 dRVKsVd~--HPtePw~la~LynG~V~IWnyetqtmVksfeV~-------------~~PvRa~kfiaRknWiv~GsD--D   76 (794)
T KOG0276|consen   14 DRVKSVDF--HPTEPWILAALYNGDVQIWNYETQTMVKSFEVS-------------EVPVRAAKFIARKNWIVTGSD--D   76 (794)
T ss_pred             Cceeeeec--CCCCceEEEeeecCeeEEEecccceeeeeeeec-------------ccchhhheeeeccceEEEecC--C
Confidence            89999999  889999999999999999999988754443332             267999999999999999999  9


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (432)
                      ..|++|+.+   +...++.| ..|.+.|++++.+|..++++++ +|-+|++||.+..-.+.+++       ++|...|++
T Consensus        77 ~~IrVfnyn---t~ekV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf-------eGH~HyVMq  145 (794)
T KOG0276|consen   77 MQIRVFNYN---TGEKVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF-------EGHEHYVMQ  145 (794)
T ss_pred             ceEEEEecc---cceeeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE-------cCcceEEEE
Confidence            999999999   88889999 8999999999999999999999 99999999999666677776       999999999


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC--CEEEEeeC-Ce
Q 014005          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDY-MN  349 (432)
Q Consensus       273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg--~~l~s~~~-~~  349 (432)
                      ++|+|..++.||+++-|++|++|.+.+...    ..++++|             ...|+++.+-+.|  .||++|+| .+
T Consensus       146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~----nfTl~gH-------------ekGVN~Vdyy~~gdkpylIsgaDD~t  208 (794)
T KOG0276|consen  146 VAFNPKDPNTFASASLDRTVKVWSLGSPHP----NFTLEGH-------------EKGVNCVDYYTGGDKPYLISGADDLT  208 (794)
T ss_pred             EEecCCCccceeeeeccccEEEEEcCCCCC----ceeeecc-------------ccCcceEEeccCCCcceEEecCCCce
Confidence            999998889999999999999999987665    6888997             8999999998855  69999855 99


Q ss_pred             EEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005          350 LKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       350 i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                      ++|||.   .+++++..|..           .+...++......+++|+-||++++|..+
T Consensus       209 iKvWDyQtk~CV~TLeGHt~-----------Nvs~v~fhp~lpiiisgsEDGTvriWhs~  257 (794)
T KOG0276|consen  209 IKVWDYQTKSCVQTLEGHTN-----------NVSFVFFHPELPIIISGSEDGTVRIWNSK  257 (794)
T ss_pred             EEEeecchHHHHHHhhcccc-----------cceEEEecCCCcEEEEecCCccEEEecCc
Confidence            999999   89999998864           33444455555569999999999999943

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=1.3e-27  Score=241.00  Aligned_cols=277  Identities=15%  Similarity=0.154  Sum_probs=203.6

Q ss_pred             hhccccchhhhhhhhcC----CCCCccccCCCcEEEEEEcCC-CCEEEEecccceEEEEEecCCcCCCCccccchhhhcc
Q 014005            6 EEASASLEWKCSQAFGE----RNPDEELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQ   80 (432)
Q Consensus         6 ~~~~~~~~w~~~~~~~~----~~~~~~~~h~~~V~~~~fsp~-g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   80 (432)
                      ..+.....|.+.....+    ......+.+...|.+++|+|. +.+||+++.||+|+|||+.+++.              
T Consensus       502 g~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~--------------  567 (793)
T PLN00181        502 GVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL--------------  567 (793)
T ss_pred             eCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE--------------
Confidence            44455677876532211    111223445678999999874 78999999999999999987653              


Q ss_pred             ccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCC
Q 014005           81 MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP  159 (432)
Q Consensus        81 ~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  159 (432)
                                   +..+.+|.            +.|++++|  +| ++.+|++|+.|++|++||+.++........  + 
T Consensus       568 -------------~~~~~~H~------------~~V~~l~~--~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~--~-  617 (793)
T PLN00181        568 -------------VTEMKEHE------------KRVWSIDY--SSADPTLLASGSDDGSVKLWSINQGVSIGTIKT--K-  617 (793)
T ss_pred             -------------EEEecCCC------------CCEEEEEE--cCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec--C-
Confidence                         36788999            99999999  64 788999999999999999987764332221  1 


Q ss_pred             ccccccccccccccccccCC-CCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c
Q 014005          160 FVSSENTLLAEKNFMNEHNP-PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D  237 (432)
Q Consensus       160 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~  237 (432)
                                 ..+.++.|. +++..+++|+.  |+.|++||++..  ..+...+ .+|...|.++.|. ++..++++ .
T Consensus       618 -----------~~v~~v~~~~~~g~~latgs~--dg~I~iwD~~~~--~~~~~~~-~~h~~~V~~v~f~-~~~~lvs~s~  680 (793)
T PLN00181        618 -----------ANICCVQFPSESGRSLAFGSA--DHKVYYYDLRNP--KLPLCTM-IGHSKTVSYVRFV-DSSTLVSSST  680 (793)
T ss_pred             -----------CCeEEEEEeCCCCCEEEEEeC--CCeEEEEECCCC--CccceEe-cCCCCCEEEEEEe-CCCEEEEEEC
Confidence                       356778884 56889999988  999999999832  2244555 6899999999997 67788888 9


Q ss_pred             CCeEEEEeCCCC-----CceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc
Q 014005          238 DLRINLWNLEIS-----DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  312 (432)
Q Consensus       238 d~~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (432)
                      |++|++||++..     ...+..+       .+|...++.++|+|++ .+|++|+.|+.|++|+......    ...+..
T Consensus       681 D~~ikiWd~~~~~~~~~~~~l~~~-------~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~----~~s~~~  748 (793)
T PLN00181        681 DNTLKLWDLSMSISGINETPLHSF-------MGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMP----VLSYKF  748 (793)
T ss_pred             CCEEEEEeCCCCccccCCcceEEE-------cCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCc----eEEEec
Confidence            999999999732     1334443       7899999999999998 9999999999999999875432    111111


Q ss_pred             cccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       313 h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      ....+........+...|.+++|+|++.+|++|+. |.|+||++
T Consensus       749 ~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        749 KTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             ccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            00000000011223567999999999999999855 99999986

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=2.2e-27  Score=211.39  Aligned_cols=241  Identities=22%  Similarity=0.371  Sum_probs=201.5

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ...|...+.++.|+|++++|++++.||.|++|++.+++..                           ..+..|.      
T Consensus        47 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~---------------------------~~~~~~~------   93 (289)
T cd00200          47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV---------------------------RTLTGHT------   93 (289)
T ss_pred             EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce---------------------------EEEeccC------
Confidence            3457788999999999999999999999999999875432                           5667787      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                            ..+.++.|  +++++++++++.|+.+.+||+.+++....  +..+.           ..+.++.+++++.+++.
T Consensus        94 ------~~i~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~-----------~~i~~~~~~~~~~~l~~  152 (289)
T cd00200          94 ------SYVSSVAF--SPDGRILSSSSRDKTIKVWDVETGKCLTT--LRGHT-----------DWVNSVAFSPDGTFVAS  152 (289)
T ss_pred             ------CcEEEEEE--cCCCCEEEEecCCCeEEEEECCCcEEEEE--eccCC-----------CcEEEEEEcCcCCEEEE
Confidence                  88999999  77888888888899999999986653322  22333           67899999999888888


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      +..  ++.+++||++   ..+....+ ..|...+.++.|+|+++.++++ .|+.+++||++ .+.....+       ..|
T Consensus       153 ~~~--~~~i~i~d~~---~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~-~~~~~~~~-------~~~  218 (289)
T cd00200         153 SSQ--DGTIKLWDLR---TGKCVATL-TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS-TGKCLGTL-------RGH  218 (289)
T ss_pred             EcC--CCcEEEEEcc---ccccceeE-ecCccccceEEECCCcCEEEEecCCCcEEEEECC-CCceecch-------hhc
Confidence            886  8999999998   56667777 6788899999999999999988 89999999998 45555543       578


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~  346 (432)
                      ...+.++.|+|++ .++++++.||.|++||+.+++.    ...+..|             ...+.+++|+|++++|++++
T Consensus       219 ~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~~----~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~  280 (289)
T cd00200         219 ENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGEC----VQTLSGH-------------TNSVTSLAWSPDGKRLASGS  280 (289)
T ss_pred             CCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCcee----EEEcccc-------------CCcEEEEEECCCCCEEEEec
Confidence            8899999999997 8999888899999999997665    4666675             67899999999999999975


Q ss_pred             C-CeEEEEe
Q 014005          347 Y-MNLKVFR  354 (432)
Q Consensus       347 ~-~~i~iwd  354 (432)
                      . +.+++|+
T Consensus       281 ~d~~i~iw~  289 (289)
T cd00200         281 ADGTIRIWD  289 (289)
T ss_pred             CCCeEEecC
Confidence            4 9999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=2.5e-29  Score=209.56  Aligned_cols=259  Identities=12%  Similarity=0.229  Sum_probs=203.4

Q ss_pred             ccchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccc
Q 014005            2 ILNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQM   81 (432)
Q Consensus         2 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   81 (432)
                      |+++.-+-....|+-+..+-   .....+|++.|.|+.|.  .+.|++|+.|.+|++||+++++.+              
T Consensus       210 iVSGlrDnTikiWD~n~~~c---~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l--------------  270 (499)
T KOG0281|consen  210 IVSGLRDNTIKIWDKNSLEC---LKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL--------------  270 (499)
T ss_pred             hhcccccCceEEeccccHHH---HHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh--------------
Confidence            44554555666776664433   23456799999999996  558999999999999999998744              


Q ss_pred             cccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCc
Q 014005           82 DFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPF  160 (432)
Q Consensus        82 ~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~  160 (432)
                                   .++-+|.            +.|..+.|  +  +.++++++.|.++.+||+.... ......+.+|. 
T Consensus       271 -------------~tlihHc------------eaVLhlrf--~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr-  320 (499)
T KOG0281|consen  271 -------------NTLIHHC------------EAVLHLRF--S--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR-  320 (499)
T ss_pred             -------------hHHhhhc------------ceeEEEEE--e--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhh-
Confidence                         6788898            99999999  2  4599999999999999997654 11112223333 


Q ss_pred             cccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC
Q 014005          161 VSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL  239 (432)
Q Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~  239 (432)
                                ..|..+.|+..  ++++++.  |.++++|++.   +..+++++ .+|...|.|+.+  .++++++| .|.
T Consensus       321 ----------AaVNvVdfd~k--yIVsASg--DRTikvW~~s---t~efvRtl-~gHkRGIAClQY--r~rlvVSGSSDn  380 (499)
T KOG0281|consen  321 ----------AAVNVVDFDDK--YIVSASG--DRTIKVWSTS---TCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN  380 (499)
T ss_pred             ----------hheeeeccccc--eEEEecC--CceEEEEecc---ceeeehhh-hcccccceehhc--cCeEEEecCCCc
Confidence                      56677777654  8888887  9999999999   88999999 899999999887  67899999 999


Q ss_pred             eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccc-----ceeecccc
Q 014005          240 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS-----ARILRDAA  314 (432)
Q Consensus       240 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~h~  314 (432)
                      +|++||++ .+.+++.+       ++|..-|+++.|+.   +.+++|+.||+|++||+..+......     +..+..  
T Consensus       381 tIRlwdi~-~G~cLRvL-------eGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~--  447 (499)
T KOG0281|consen  381 TIRLWDIE-CGACLRVL-------EGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE--  447 (499)
T ss_pred             eEEEEecc-ccHHHHHH-------hchHHhhhheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhh--
Confidence            99999999 78899877       99999999999973   67999999999999999876432110     223333  


Q ss_pred             cccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          315 ESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       315 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                                 |.+.|..+.|.  ...++++ -+.+|-|||.
T Consensus       448 -----------hsgRVFrLQFD--~fqIvsssHddtILiWdF  476 (499)
T KOG0281|consen  448 -----------HSGRVFRLQFD--EFQIISSSHDDTILIWDF  476 (499)
T ss_pred             -----------ccceeEEEeec--ceEEEeccCCCeEEEEEc
Confidence                       37899999996  4466665 4499999999

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=3.7e-28  Score=199.70  Aligned_cols=233  Identities=15%  Similarity=0.195  Sum_probs=182.2

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      -.|++++.+.+|+|||.++|||+.|-.|+|.|++......    .-+++...+.  ..   ....++++-.|.       
T Consensus       109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks----~~~em~~~~~--qa---~hPvIRTlYDH~-------  172 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS----KPKEMISGDT--QA---RHPVIRTLYDHV-------  172 (430)
T ss_pred             eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc----chhhhccCCc--cc---CCceEeehhhcc-------
Confidence            3588999999999999999999999999999987432110    0000000000  00   123556777787       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           +.|+++.|  +|....|++|+.|++|++||......++....-..           ...++++.|+|.|.++..|
T Consensus       173 -----devn~l~F--HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd-----------~~~vrsiSfHPsGefllvg  234 (430)
T KOG0640|consen  173 -----DEVNDLDF--HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD-----------TEPVRSISFHPSGEFLLVG  234 (430)
T ss_pred             -----Ccccceee--cchhheEEeccCCCeEEEEecccHHHHHHHHHhhc-----------cceeeeEeecCCCceEEEe
Confidence                 99999999  88999999999999999999976554333222222           2689999999999999999


Q ss_pred             eeeccceEEEEeecccccceeeEEe--ecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVY--PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      ..  -..+++||++   +.+|.-.-  ..+|.+.|+++.+++.+++.++| .||.|++||-- .++|++++      -..
T Consensus       235 Td--Hp~~rlYdv~---T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV-S~rCv~t~------~~A  302 (430)
T KOG0640|consen  235 TD--HPTLRLYDVN---TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV-SNRCVRTI------GNA  302 (430)
T ss_pred             cC--CCceeEEecc---ceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccc-cHHHHHHH------Hhh
Confidence            98  7799999999   66665543  25789999999999999999999 99999999987 68888876      245


Q ss_pred             CC-cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc
Q 014005          266 LT-EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  312 (432)
Q Consensus       266 ~~-~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (432)
                      |. +.|++..|..++ +++++.+.|..+++|.+.+++.    ++.+.+
T Consensus       303 H~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~----l~~YtG  345 (430)
T KOG0640|consen  303 HGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRM----LKEYTG  345 (430)
T ss_pred             cCCceeeeEEEccCC-eEEeecCCcceeeeeeecCCce----EEEEec
Confidence            54 579999999999 9999999999999999999886    455544

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=1.3e-27  Score=201.62  Aligned_cols=271  Identities=14%  Similarity=0.220  Sum_probs=209.0

Q ss_pred             cchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCC---EEEEecccceEEEEEecCCcCCCCccccchhhhc
Q 014005            3 LNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEK   79 (432)
Q Consensus         3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~---~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~   79 (432)
                      |.+.++.....|..+.    +......+|+++|.++++--...   .+++++.|+++++|.++.+...            
T Consensus       119 ltgsYDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~------------  182 (423)
T KOG0313|consen  119 LTGSYDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK------------  182 (423)
T ss_pred             EEeecCCeeEEEecCC----ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh------------
Confidence            3344444455554442    22344568999999887754333   5999999999999999887643            


Q ss_pred             cccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-----------
Q 014005           80 QMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-----------  148 (432)
Q Consensus        80 ~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-----------  148 (432)
                                 .+.....+||.            ..|.+++.  .++|.++++|+.|..|++|+.....           
T Consensus       183 -----------~~~~~~~~GHk------------~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r  237 (423)
T KOG0313|consen  183 -----------VKALKVCRGHK------------RSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR  237 (423)
T ss_pred             -----------hhHHhHhcccc------------cceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence                       12233455999            99999999  8899999999999999999943211           


Q ss_pred             ------------eeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecC
Q 014005          149 ------------VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHA  216 (432)
Q Consensus       149 ------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~  216 (432)
                                  ...+..+.+|.           .+|.++.|++ ...+++++.  |.+|+.||+.   .+.++..+  .
T Consensus       238 rk~~~~~~~~~~r~P~vtl~GHt-----------~~Vs~V~w~d-~~v~yS~Sw--DHTIk~WDle---tg~~~~~~--~  298 (423)
T KOG0313|consen  238 RKKQKREKEGGTRTPLVTLEGHT-----------EPVSSVVWSD-ATVIYSVSW--DHTIKVWDLE---TGGLKSTL--T  298 (423)
T ss_pred             hhhhhhhhcccccCceEEecccc-----------cceeeEEEcC-CCceEeecc--cceEEEEEee---cccceeee--e
Confidence                        11122334444           7888999988 777888888  9999999999   66666665  3


Q ss_pred             CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 014005          217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (432)
Q Consensus       217 ~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iw  295 (432)
                      ....++++..+|..+.|++| .|..+++||.+..+..+-..     ++.+|.++|.++.|+|.+..+|++|+.|+++++|
T Consensus       299 ~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~-----s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klW  373 (423)
T KOG0313|consen  299 TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ-----SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLW  373 (423)
T ss_pred             cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEE-----eeecchhhhhheecCCCCceEEEEEecCCeEEEE
Confidence            45689999999999999999 99999999999654443322     4589999999999999988899999999999999


Q ss_pred             EccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       296 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                      |+|+.+-.   +..+.+|             ...|.++.|+. +.+|++| .|++|+|+.-
T Consensus       374 DvRS~k~p---lydI~~h-------------~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  374 DVRSTKAP---LYDIAGH-------------NDKVLSVDWNE-GGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             EeccCCCc---ceeeccC-------------CceEEEEeccC-CceEEeccCcceEEEecc
Confidence            99987632   6788887             78999999985 5688886 5699999865

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=1.2e-26  Score=217.01  Aligned_cols=270  Identities=13%  Similarity=0.093  Sum_probs=196.4

Q ss_pred             hhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCccee
Q 014005           15 KCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK   94 (432)
Q Consensus        15 ~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~   94 (432)
                      ||+++||+.  .+...+-..|....+++++..+++++.+.....|+...+..+.       .+...+.       .....
T Consensus         5 k~rh~~g~~--~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~-------~~~~~G~-------~~~~~   68 (493)
T PTZ00421          5 RFRHTQGVP--ARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVL-------KHTDYGK-------LASNP   68 (493)
T ss_pred             ccccccccc--CCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEEe-------ecccccc-------CCCCC
Confidence            677777733  3333444567777788887778888888888888865543110       0000000       00011


Q ss_pred             eeeecCCccccccchhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcce-----eeeeecCCCCccccccccc
Q 014005           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKV-----KKIKEMDHFPFVSSENTLL  168 (432)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~  168 (432)
                      ..+.+|.            +.|.+++|  +| ++++|++|+.|++|++||+..+..     ..+..+..|.         
T Consensus        69 ~~l~GH~------------~~V~~v~f--sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~---------  125 (493)
T PTZ00421         69 PILLGQE------------GPIIDVAF--NPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT---------  125 (493)
T ss_pred             ceEeCCC------------CCEEEEEE--cCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC---------
Confidence            2477898            99999999  77 788999999999999999976532     1233444455         


Q ss_pred             cccccccccCCCCC-cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 014005          169 AEKNFMNEHNPPSF-AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  246 (432)
Q Consensus       169 ~~~~i~~~~~~~~~-~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~  246 (432)
                        ..|.+++|+|+. ..+++++.  |+.|++||++   .++....+ .+|...|.+++|+|++..|+++ .|++|++||+
T Consensus       126 --~~V~~l~f~P~~~~iLaSgs~--DgtVrIWDl~---tg~~~~~l-~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~  197 (493)
T PTZ00421        126 --KKVGIVSFHPSAMNVLASAGA--DMVVNVWDVE---RGKAVEVI-KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDP  197 (493)
T ss_pred             --CcEEEEEeCcCCCCEEEEEeC--CCEEEEEECC---CCeEEEEE-cCCCCceEEEEEECCCCEEEEecCCCEEEEEEC
Confidence              789999999986 67888888  9999999998   66777777 7899999999999999999999 9999999999


Q ss_pred             CCCCceeeEeecCCCCcCCCCcc-eEEEEEcCCCCcEEEEEe----CCCeEEEEEccccccccccceeecccccccCCcc
Q 014005          247 EISDQCFNIVDMKPSNMDDLTEV-ITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKS  321 (432)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~  321 (432)
                      + .+..+..+       .+|.+. +..+.|.+++ ..+++++    .|+.|++||+++....   ......+        
T Consensus       198 r-sg~~v~tl-------~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p---~~~~~~d--------  257 (493)
T PTZ00421        198 R-DGTIVSSV-------EAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASP---YSTVDLD--------  257 (493)
T ss_pred             C-CCcEEEEE-------ecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCc---eeEeccC--------
Confidence            9 56666554       666653 4567899987 6666544    4789999999875532   2333221        


Q ss_pred             ceeeeecceeEEEEcCCCCEEEEe--eCCeEEEEec
Q 014005          322 FFTEIIASISDIKFANDGQHLLSR--DYMNLKVFRY  355 (432)
Q Consensus       322 ~~~~~~~~v~~~~~s~dg~~l~s~--~~~~i~iwd~  355 (432)
                          ....+....|++++.+|+++  +|+.|++||+
T Consensus       258 ----~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl  289 (493)
T PTZ00421        258 ----QSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL  289 (493)
T ss_pred             ----CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence                12456667899999988875  3699999999

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.1e-28  Score=192.41  Aligned_cols=243  Identities=15%  Similarity=0.195  Sum_probs=194.4

Q ss_pred             CCcEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           32 VDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        32 ~~~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      .+.+..++|+++. +.+++++.||+++|||....                          ..++..++.|.         
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~--------------------------s~Pi~~~kEH~---------  104 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP--------------------------SKPIHKFKEHK---------  104 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCC--------------------------CcchhHHHhhh---------
Confidence            6789999999865 56888999999999995432                          23557788898         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-ceecce
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLE  189 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~  189 (432)
                         ..|.++.|.+ .+++.+++++.|++|++|+...++  .+..+.+|.           ..|...+|+|... .++..+
T Consensus       105 ---~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r~~--Sv~Tf~gh~-----------~~Iy~a~~sp~~~nlfas~S  167 (311)
T KOG0277|consen  105 ---REVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNRPN--SVQTFNGHN-----------SCIYQAAFSPHIPNLFASAS  167 (311)
T ss_pred             ---hheEEecccc-ccceeEEeeccCCceEeecCCCCc--ceEeecCCc-----------cEEEEEecCCCCCCeEEEcc
Confidence               9999999953 456678888999999999998766  444456666           8899999999854 445555


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      .  |+.+++||++.  .++.+. + ..|...|.++.|+. +.+.+++| .|+.|+.||++....++..+       .+|.
T Consensus       168 g--d~~l~lwdvr~--~gk~~~-i-~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL-------~gh~  234 (311)
T KOG0277|consen  168 G--DGTLRLWDVRS--PGKFMS-I-EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL-------NGHG  234 (311)
T ss_pred             C--CceEEEEEecC--CCceeE-E-EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee-------cCCc
Confidence            5  99999999885  344444 4 68889999999997 45567788 99999999999666665554       8999


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC-CCCEEEEe-
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSR-  345 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~s~-  345 (432)
                      -.|+.++|||....+||+++.|=+++|||...+.-+   +.+...|             ..-+.++.||+ ++.++|+. 
T Consensus       235 ~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~---~e~~~~H-------------tEFv~g~Dws~~~~~~vAs~g  298 (311)
T KOG0277|consen  235 LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA---IETVDHH-------------TEFVCGLDWSLFDPGQVASTG  298 (311)
T ss_pred             eEEEEEecCcchhhHhhhccccceEEecccccchhh---hhhhhcc-------------ceEEeccccccccCceeeecc
Confidence            999999999988789999999999999998865543   4566665             77899999998 46688874 


Q ss_pred             eCCeEEEEec
Q 014005          346 DYMNLKVFRY  355 (432)
Q Consensus       346 ~~~~i~iwd~  355 (432)
                      =|+.++||+.
T Consensus       299 WDe~l~Vw~p  308 (311)
T KOG0277|consen  299 WDELLYVWNP  308 (311)
T ss_pred             cccceeeecc
Confidence            5699999984

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.3e-27  Score=190.21  Aligned_cols=256  Identities=16%  Similarity=0.228  Sum_probs=202.4

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      -+|.+.|..+..+--|+.|||++.|++|+|+..++...                        ...+.++.||.       
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------s~ll~~L~Gh~-------   56 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------SKLLAELTGHS-------   56 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------ceeeeEecCCC-------
Confidence            46889999999888899999999999999999987642                        24567899999       


Q ss_pred             hhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc--ce
Q 014005          109 SLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA--HG  185 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~  185 (432)
                           ++|..++|. +| .|..|++++.||+|.||+-.+++..+...+..|.           ..+.+++|.|...  .|
T Consensus        57 -----GPVwqv~wa-hPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~-----------~SVNsV~wapheygl~L  119 (299)
T KOG1332|consen   57 -----GPVWKVAWA-HPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS-----------ASVNSVAWAPHEYGLLL  119 (299)
T ss_pred             -----CCeeEEeec-ccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc-----------ccceeecccccccceEE
Confidence                 999999996 34 6899999999999999999999888887787777           8999999998855  45


Q ss_pred             ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC---C-----------CEEEEE-cCCeEEEEeCCCCC
Q 014005          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---C-----------ETFVSA-DDLRINLWNLEISD  250 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~-~d~~i~lwd~~~~~  250 (432)
                      +.++.  ||.|.+.+.+........+.. ..|.-.+++++|.|.   |           +.|++| .|..|++|+.+...
T Consensus       120 acasS--DG~vsvl~~~~~g~w~t~ki~-~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~  196 (299)
T KOG1332|consen  120 ACASS--DGKVSVLTYDSSGGWTTSKIV-FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS  196 (299)
T ss_pred             EEeeC--CCcEEEEEEcCCCCccchhhh-hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc
Confidence            55555  999999999865222233333 789999999999986   4           458999 99999999998321


Q ss_pred             ceeeEeecCCCCcCCCCcceEEEEEcCCC---CcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIY---CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (432)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  327 (432)
                      -.+.      .++.+|...|+.++|.|.-   ...||+++.||++.||..+...... ....++.             ..
T Consensus       197 w~~e------~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w-k~tll~~-------------f~  256 (299)
T KOG1332|consen  197 WKLE------RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW-KKTLLEE-------------FP  256 (299)
T ss_pred             hhhh------hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc-ccccccc-------------CC
Confidence            1111      1358999999999999965   2589999999999999876221110 0112221             14


Q ss_pred             cceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          328 ASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       328 ~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                      ..+..+.||..|..|+.+ +|+.+.+|.-
T Consensus       257 ~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  257 DVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             cceEEEEEeccccEEEEecCCcEEEEEEe
Confidence            689999999999999985 6699999976

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.5e-28  Score=206.38  Aligned_cols=263  Identities=14%  Similarity=0.170  Sum_probs=204.0

Q ss_pred             hccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccc
Q 014005            7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST   86 (432)
Q Consensus         7 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (432)
                      .+.....|+....-.-+--.....|..+|.-+.||||.++|++|+.|..+++||..++...                   
T Consensus       244 kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~-------------------  304 (519)
T KOG0293|consen  244 KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR-------------------  304 (519)
T ss_pred             CCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh-------------------
Confidence            3444455554422111223456789999999999999999999999999999999998643                   


Q ss_pred             ccCCcceeeee-ecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005           87 SHPEYRYKTEF-QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN  165 (432)
Q Consensus        87 ~~p~~~~~~~~-~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  165 (432)
                              ..+ ++|.            ..+.+.+|  -|||..|++|+.|+++..||+.+...........        
T Consensus       305 --------~~y~~~~~------------~S~~sc~W--~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~--------  354 (519)
T KOG0293|consen  305 --------HLYPSGLG------------FSVSSCAW--CPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRD--------  354 (519)
T ss_pred             --------hhcccCcC------------CCcceeEE--ccCCceeEecCCCCcEEEecCCcchhhccccccc--------
Confidence                    122 2233            67899999  6899999999999999999998766444333322        


Q ss_pred             ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEE
Q 014005          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW  244 (432)
Q Consensus       166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lw  244 (432)
                           ..|.+++.++++++++....  |..+++++.+   +..++...  .....|++++.+.+++++++. .+..+++|
T Consensus       355 -----~~v~dlait~Dgk~vl~v~~--d~~i~l~~~e---~~~dr~li--se~~~its~~iS~d~k~~LvnL~~qei~LW  422 (519)
T KOG0293|consen  355 -----PKVHDLAITYDGKYVLLVTV--DKKIRLYNRE---ARVDRGLI--SEEQPITSFSISKDGKLALVNLQDQEIHLW  422 (519)
T ss_pred             -----ceeEEEEEcCCCcEEEEEec--ccceeeechh---hhhhhccc--cccCceeEEEEcCCCcEEEEEcccCeeEEe
Confidence                 45889999999999999887  9999999988   43444332  345689999999999999999 99999999


Q ss_pred             eCCCCCceeeEeecCCCCcCCCCc--ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccc
Q 014005          245 NLEISDQCFNIVDMKPSNMDDLTE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF  322 (432)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~  322 (432)
                      |++ ....++.+       .+|..  .+-.-+|--.+..++|+|++|+.|+||+..+|++    +..+.+|         
T Consensus       423 Dl~-e~~lv~kY-------~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl----l~~LsGH---------  481 (519)
T KOG0293|consen  423 DLE-ENKLVRKY-------FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL----LAVLSGH---------  481 (519)
T ss_pred             ecc-hhhHHHHh-------hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce----eEeecCC---------
Confidence            999 55555433       56653  3444566543348999999999999999999998    7999998         


Q ss_pred             eeeeecceeEEEEcCCC-CEEEEeeC-CeEEEEec
Q 014005          323 FTEIIASISDIKFANDG-QHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       323 ~~~~~~~v~~~~~s~dg-~~l~s~~~-~~i~iwd~  355 (432)
                          ...|++++|+|.. .++|+++| |+||||.+
T Consensus       482 ----s~~vNcVswNP~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  482 ----SKTVNCVSWNPADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             ----cceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence                8899999999965 56788755 99999987

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=8.3e-26  Score=177.99  Aligned_cols=266  Identities=19%  Similarity=0.261  Sum_probs=198.9

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      .+..+..|.+++|+|.|.+.|+|++..++||.....-..+  ...       +..   ..-|.....+.-+-|.      
T Consensus        28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~--r~~-------hea---~~~pp~v~~kr~khhk------   89 (350)
T KOG0641|consen   28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL--RHA-------HEA---AKQPPSVLCKRNKHHK------   89 (350)
T ss_pred             EecchhheeeEEecCCCceEEeccCCceEEEEccccccCc--ccc-------ccc---ccCCCeEEeeeccccC------
Confidence            4566889999999999999999999999999875432111  000       000   1111111223334566      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCccee---eeeecCCCCccccccccccccccccccCCCC---
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK---KIKEMDHFPFVSSENTLLAEKNFMNEHNPPS---  181 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---  181 (432)
                            +.|+|.+|  +|+|+++++|++|++|++...+...+.   .-.+++.|.           +.|++++|-.+   
T Consensus        90 ------gsiyc~~w--s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhd-----------gtirdl~fld~~~s  150 (350)
T KOG0641|consen   90 ------GSIYCTAW--SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD-----------GTIRDLAFLDDPES  150 (350)
T ss_pred             ------ccEEEEEe--cCccCeEEecCCCceEEEEecccccccccCcceeeeecC-----------CceeeeEEecCCCc
Confidence                  99999999  999999999999999999876544322   223445555           88999998543   


Q ss_pred             -CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecC
Q 014005          182 -FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK  259 (432)
Q Consensus       182 -~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~  259 (432)
                       +..+++++. .|..|.+-|..   .++..+.+ .+|++.|.++- +=++-.+++| .|.+|++||++ -..++++++-.
T Consensus       151 ~~~il~s~ga-gdc~iy~tdc~---~g~~~~a~-sghtghilaly-swn~~m~~sgsqdktirfwdlr-v~~~v~~l~~~  223 (350)
T KOG0641|consen  151 GGAILASAGA-GDCKIYITDCG---RGQGFHAL-SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLR-VNSCVNTLDND  223 (350)
T ss_pred             CceEEEecCC-CcceEEEeecC---CCCcceee-cCCcccEEEEE-EecCcEEEccCCCceEEEEeee-ccceeeeccCc
Confidence             344444432 25567777777   78888888 89999998873 3357789999 99999999999 56777776332


Q ss_pred             CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC
Q 014005          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (432)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg  339 (432)
                      ...-.-.++.|.+++..|.| ++|++|-.|...-+||+|.+++    ++.|..|             ...|.++.|||..
T Consensus       224 ~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~----iq~f~ph-------------sadir~vrfsp~a  285 (350)
T KOG0641|consen  224 FHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRM----IQRFHPH-------------SADIRCVRFSPGA  285 (350)
T ss_pred             ccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCce----eeeeCCC-------------ccceeEEEeCCCc
Confidence            22111224679999999999 9999999999999999998887    6888887             8899999999999


Q ss_pred             CEEEEeeC-CeEEEEec
Q 014005          340 QHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       340 ~~l~s~~~-~~i~iwd~  355 (432)
                      .||++|++ ..|++=|+
T Consensus       286 ~yllt~syd~~ikltdl  302 (350)
T KOG0641|consen  286 HYLLTCSYDMKIKLTDL  302 (350)
T ss_pred             eEEEEecccceEEEeec
Confidence            99999977 99999999

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=4.4e-27  Score=205.73  Aligned_cols=298  Identities=15%  Similarity=0.106  Sum_probs=206.2

Q ss_pred             CCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (432)
Q Consensus        25 ~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~  104 (432)
                      +++.-.|+..|+++++.|.|-.|++|+.|.+|++||+......                    -+.++.+.-..+     
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas--------------------~~~fr~l~P~E~-----  214 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS--------------------MRSFRQLQPCET-----  214 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc--------------------chhhhccCcccc-----
Confidence            4444567889999999999999999999999999999875421                    111122222223     


Q ss_pred             cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeee----------ecCCCCccccccccccccccc
Q 014005          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK----------EMDHFPFVSSENTLLAEKNFM  174 (432)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~  174 (432)
                               ..|.+++|  ++.|..|++.+..-..+|+|-.+.++..+.          .-.+|.           ..+.
T Consensus       215 ---------h~i~sl~y--s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHi-----------a~lt  272 (641)
T KOG0772|consen  215 ---------HQINSLQY--SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHI-----------AELT  272 (641)
T ss_pred             ---------cccceeee--cCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCce-----------eeee
Confidence                     45899999  889999999888889999997765432221          122333           6778


Q ss_pred             cccCCCCCc-ceecceeeccceEEEEeecccccceeeEEee----cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCC
Q 014005          175 NEHNPPSFA-HGYHLEWTENMATKIANVGNSVHARCQKVYP----HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  248 (432)
Q Consensus       175 ~~~~~~~~~-~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~  248 (432)
                      +..|+|..+ .+++++.  ||++++||++....  ..+++.    .+..-.++.++|+++|+.+|+| .||.|.+|+...
T Consensus       273 ~g~whP~~k~~FlT~s~--DgtlRiWdv~~~k~--q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~  348 (641)
T KOG0772|consen  273 CGCWHPDNKEEFLTCSY--DGTLRIWDVNNTKS--QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGS  348 (641)
T ss_pred             ccccccCcccceEEecC--CCcEEEEecCCchh--heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCC
Confidence            889999854 4556666  99999999986432  222221    2334468899999999999999 999999999862


Q ss_pred             CCceeeEeecCCCCcCCCCc--ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeee
Q 014005          249 SDQCFNIVDMKPSNMDDLTE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (432)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  326 (432)
                      ........     .-..|..  .|+++.||++| ++|++-+.|+++++||+++.+.+.   ..+.+= .  .        
T Consensus       349 ~~v~p~~~-----vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL---~~~tgL-~--t--------  408 (641)
T KOG0772|consen  349 RTVRPVMK-----VKDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPL---NVRTGL-P--T--------  408 (641)
T ss_pred             cccccceE-----eeeccCCCCceeEEEecccc-chhhhccCCCceeeeeccccccch---hhhcCC-C--c--------
Confidence            22111100     1156666  89999999999 999999999999999999877653   333330 0  0        


Q ss_pred             ecceeEEEEcCCCCEEEEee------C-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecc
Q 014005          327 IASISDIKFANDGQHLLSRD------Y-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLY  396 (432)
Q Consensus       327 ~~~v~~~~~s~dg~~l~s~~------~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  396 (432)
                      ..+-+.++|||+.++|++|.      . +.+.+||-   ..++.+.+...           .+.....+..+-.|..|+-
T Consensus       409 ~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a-----------Svv~~~WhpkLNQi~~gsg  477 (641)
T KOG0772|consen  409 PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA-----------SVVRCLWHPKLNQIFAGSG  477 (641)
T ss_pred             cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc-----------eEEEEeecchhhheeeecC
Confidence            24667899999999999853      1 78999998   33343333221           0000001112225888899


Q ss_pred             cceeeeec
Q 014005          397 LINLSALS  404 (432)
Q Consensus       397 ~~~i~~~~  404 (432)
                      ||.+++|-
T Consensus       478 dG~~~vyY  485 (641)
T KOG0772|consen  478 DGTAHVYY  485 (641)
T ss_pred             CCceEEEE
Confidence            99999876

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.1e-26  Score=188.64  Aligned_cols=269  Identities=15%  Similarity=0.217  Sum_probs=204.4

Q ss_pred             CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchh-----hhccccccc-ccc-----------CCcce
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSE-----LEKQMDFTS-TSH-----------PEYRY   93 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~-----------p~~~~   93 (432)
                      ....|+++.|+++|.+|++++.|.+++|||..+++..+........     +..+...++ +..           -..++
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            3678999999999999999999999999999988765432222111     122222111 111           14577


Q ss_pred             eeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccc
Q 014005           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (432)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  173 (432)
                      ++-|.||.            ..|++|+.  +|-++.+++++.|++|++||++..++..+......               
T Consensus        93 lRYF~GH~------------~~V~sL~~--sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~---------------  143 (311)
T KOG1446|consen   93 LRYFPGHK------------KRVNSLSV--SPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR---------------  143 (311)
T ss_pred             EEEcCCCC------------ceEEEEEe--cCCCCeEEecccCCeEEeeEecCCCCceEEecCCC---------------
Confidence            88899999            99999999  77889999999999999999998776665554332               


Q ss_pred             ccccCCCCCcceecceeeccceEEEEeecccccceeeEEe--ecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC
Q 014005          174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVY--PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD  250 (432)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~  250 (432)
                      -.++|+|.|-.++.+..  .+.|++||++.- ...+..++  ......+.+.+.|+|+|++++.+ ..+.+++.|-- .+
T Consensus       144 pi~AfDp~GLifA~~~~--~~~IkLyD~Rs~-dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf-~G  219 (311)
T KOG1446|consen  144 PIAAFDPEGLIFALANG--SELIKLYDLRSF-DKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF-DG  219 (311)
T ss_pred             cceeECCCCcEEEEecC--CCeEEEEEeccc-CCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc-CC
Confidence            35789999999998887  569999999864 33444444  23456789999999999999988 99999999987 67


Q ss_pred             ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc-cccccCCccceeeeecc
Q 014005          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD-AAESHGSKSFFTEIIAS  329 (432)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~~  329 (432)
                      .....+...+...    .---+.+|.||+ +++++|+.||+|.+|+++++..    +..+.+ +             ..+
T Consensus       220 ~~~~tfs~~~~~~----~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~----v~~~~~~~-------------~~~  277 (311)
T KOG1446|consen  220 TVKSTFSGYPNAG----NLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKK----VAVLRGPN-------------GGP  277 (311)
T ss_pred             cEeeeEeeccCCC----CcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcE----eeEecCCC-------------CCC
Confidence            7777663322211    112578899999 9999999999999999999887    566666 3             678


Q ss_pred             eeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          330 ISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       330 v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                      +.++.|+|.-..+++++ ..+-+|=.
T Consensus       278 ~~~~~fnP~~~mf~sa~-s~l~fw~p  302 (311)
T KOG1446|consen  278 VSCVRFNPRYAMFVSAS-SNLVFWLP  302 (311)
T ss_pred             ccccccCCceeeeeecC-ceEEEEec
Confidence            89999999887888776 57777743

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.1e-27  Score=185.37  Aligned_cols=239  Identities=14%  Similarity=0.201  Sum_probs=195.9

Q ss_pred             eeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccc
Q 014005           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (432)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  174 (432)
                      ..+..|+            +.|..+.|  +-+|++.++++.|++|++|+...+.+.+  .+..|.           ..|.
T Consensus        11 ~~l~~~q------------gaV~avry--N~dGnY~ltcGsdrtvrLWNp~rg~lik--tYsghG-----------~EVl   63 (307)
T KOG0316|consen   11 SILDCAQ------------GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLRGALIK--TYSGHG-----------HEVL   63 (307)
T ss_pred             eeecccc------------cceEEEEE--ccCCCEEEEcCCCceEEeecccccceee--eecCCC-----------ceee
Confidence            4567787            99999999  8999999999999999999999888444  444454           6799


Q ss_pred             cccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCC-Cce
Q 014005          175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQC  252 (432)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~-~~~  252 (432)
                      +++.+.+...+.+++.  |..+.+||+.   +++..+.+ .+|.+.|+.++|+.+...+++| -|.++++||.+.. .++
T Consensus        64 D~~~s~Dnskf~s~Gg--Dk~v~vwDV~---TGkv~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP  137 (307)
T KOG0316|consen   64 DAALSSDNSKFASCGG--DKAVQVWDVN---TGKVDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP  137 (307)
T ss_pred             eccccccccccccCCC--CceEEEEEcc---cCeeeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc
Confidence            9999999999998888  9999999999   89999999 8999999999999999999999 9999999999822 124


Q ss_pred             eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeE
Q 014005          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (432)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  332 (432)
                      ++++       ......|.++....   ..+++|+.||+++.||+|.|++    ..-.-+               .+|++
T Consensus       138 iQil-------dea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l----~sDy~g---------------~pit~  188 (307)
T KOG0316|consen  138 IQIL-------DEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTL----SSDYFG---------------HPITS  188 (307)
T ss_pred             cchh-------hhhcCceeEEEecc---cEEEeeccCCcEEEEEeeccee----ehhhcC---------------Cccee
Confidence            4444       55667799998874   5688999999999999999886    344444               58999


Q ss_pred             EEEcCCCCEEEEee-CCeEEEEec---CcceeEeecceeeeehhhhhcccc-cccccceeeEEEEeecccceeeeecc
Q 014005          333 IKFANDGQHLLSRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRF-MSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       333 ~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      ++|++||..++.+. ++++++-|-   +.++.++.|....        -++ |.  .+.....+++|+.||.+.+|+.
T Consensus       189 vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e--------ykldc~--l~qsdthV~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  189 VSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME--------YKLDCC--LNQSDTHVFSGSEDGKVYFWDL  256 (307)
T ss_pred             EEecCCCCEEEEeeccceeeecccchhHHHHHhcccccce--------eeeeee--ecccceeEEeccCCceEEEEEe
Confidence            99999999877764 499999999   8899999987521        111 11  1222346999999999999994

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1.4e-26  Score=211.07  Aligned_cols=285  Identities=11%  Similarity=0.091  Sum_probs=228.1

Q ss_pred             CccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        26 ~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      .+...|...|.+++||.+...+++|+. +.|+||+..+.+                           +++++..      
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~k---------------------------ciRTi~~------  412 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLK---------------------------CIRTITC------  412 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcc---------------------------eeEEecc------
Confidence            455789999999999999988888765 589999998865                           3345432      


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (432)
                              ..+.+..|  -|.++++++|...|.+.++|+.+..+.  .....|.           +.+-.++.+|++...
T Consensus       413 --------~y~l~~~F--vpgd~~Iv~G~k~Gel~vfdlaS~~l~--Eti~AHd-----------gaIWsi~~~pD~~g~  469 (888)
T KOG0306|consen  413 --------GYILASKF--VPGDRYIVLGTKNGELQVFDLASASLV--ETIRAHD-----------GAIWSISLSPDNKGF  469 (888)
T ss_pred             --------ccEEEEEe--cCCCceEEEeccCCceEEEEeehhhhh--hhhhccc-----------cceeeeeecCCCCce
Confidence                    45788889  578899999999999999999887632  2223444           889999999999999


Q ss_pred             ecceeeccceEEEEeeccccc--ceeeEEe------ecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEe
Q 014005          186 YHLEWTENMATKIANVGNSVH--ARCQKVY------PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV  256 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~--~~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~  256 (432)
                      ++++.  |.+|++||......  +...+.+      .-.-+..|.|+.+|||+++|+++ -|+++++|-++ +-+..-. 
T Consensus       470 vT~sa--DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD-tlKFfls-  545 (888)
T KOG0306|consen  470 VTGSA--DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD-TLKFFLS-  545 (888)
T ss_pred             EEecC--CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec-ceeeeee-
Confidence            99998  99999999764322  1111111      02346789999999999999999 99999999999 4443333 


Q ss_pred             ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc
Q 014005          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (432)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s  336 (432)
                            +-+|.-+|.++..+||+ ++++||+.|.+|++|-+.-|.-    -+.+-+|             ..+|.++.|-
T Consensus       546 ------LYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDC----HKS~fAH-------------dDSvm~V~F~  601 (888)
T KOG0306|consen  546 ------LYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDC----HKSFFAH-------------DDSVMSVQFL  601 (888)
T ss_pred             ------ecccccceeEEeccCCc-CeEEeccCCCceEEeccccchh----hhhhhcc-------------cCceeEEEEc
Confidence                  37999999999999999 9999999999999999998764    5778887             8999999999


Q ss_pred             CCCCEEEEe-eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005          337 NDGQHLLSR-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       337 ~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                      |+..++.++ -|+.|+-||-   +.++++..|...+|           .+....+..++++++.|.+|.+|...
T Consensus       602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~-----------cLav~~~G~~vvs~shD~sIRlwE~t  664 (888)
T KOG0306|consen  602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVW-----------CLAVSPNGSFVVSSSHDKSIRLWERT  664 (888)
T ss_pred             ccceeEEEecCcceEEeechhhhhhheeeccchheee-----------eeEEcCCCCeEEeccCCceeEeeecc
Confidence            988777775 5599999988   78888888865333           23334556689999999999999954

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=2.1e-26  Score=185.11  Aligned_cols=244  Identities=18%  Similarity=0.238  Sum_probs=196.8

Q ss_pred             ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      +...|.+.|.+++|+.+|..||+|+.|+++++|+++..+..                         ......+|.     
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-------------------------~~~~~~gh~-----   64 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-------------------------KELVYRGHT-----   64 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-------------------------hhhcccCCC-----
Confidence            44568889999999999999999999999999999876532                         123567888     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                             +.|-.++|.| +...+|++++.|++|++||++.+++.......              +.-..+.|+|++.+++
T Consensus        65 -------~svdql~w~~-~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~--------------~eni~i~wsp~g~~~~  122 (313)
T KOG1407|consen   65 -------DSVDQLCWDP-KHPDLFATASGDKTIRIWDIRSGKCTARIETK--------------GENINITWSPDGEYIA  122 (313)
T ss_pred             -------cchhhheeCC-CCCcceEEecCCceEEEEEeccCcEEEEeecc--------------CcceEEEEcCCCCEEE
Confidence                   8899999964 56678999999999999999998855443333              3335678999999999


Q ss_pred             cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      .+..  +..|.+.|.+   +.+.+..+  .....++.++|+.++.++... ..|.|.|.... .-+++..+       ..
T Consensus       123 ~~~k--dD~it~id~r---~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp-sLkpv~si-------~A  187 (313)
T KOG1407|consen  123 VGNK--DDRITFIDAR---TYKIVNEE--QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP-SLKPVQSI-------KA  187 (313)
T ss_pred             EecC--cccEEEEEec---ccceeehh--cccceeeeeeecCCCCEEEEecCCceEEEEecc-cccccccc-------cc
Confidence            9998  8899999988   44544443  345578889999877777766 88999999888 55555544       89


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                      |.....++.|+|+| ++||+|+.|..+.+||+.. -.|   .+.+..+             .-+|..+.||.||++||+|
T Consensus       188 H~snCicI~f~p~G-ryfA~GsADAlvSLWD~~E-LiC---~R~isRl-------------dwpVRTlSFS~dg~~lASa  249 (313)
T KOG1407|consen  188 HPSNCICIEFDPDG-RYFATGSADALVSLWDVDE-LIC---ERCISRL-------------DWPVRTLSFSHDGRMLASA  249 (313)
T ss_pred             CCcceEEEEECCCC-ceEeeccccceeeccChhH-hhh---heeeccc-------------cCceEEEEeccCcceeecc
Confidence            99999999999999 9999999999999999984 345   4666664             6799999999999999998


Q ss_pred             eC-CeEEEEec
Q 014005          346 DY-MNLKVFRY  355 (432)
Q Consensus       346 ~~-~~i~iwd~  355 (432)
                      +. ..|-|=++
T Consensus       250 SEDh~IDIA~v  260 (313)
T KOG1407|consen  250 SEDHFIDIAEV  260 (313)
T ss_pred             CccceEEeEec
Confidence            65 76655555

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=1.9e-27  Score=189.89  Aligned_cols=256  Identities=13%  Similarity=0.181  Sum_probs=205.6

Q ss_pred             ccCCCcEEEEEEcC---CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc-
Q 014005           29 LQDVDIVSAIEFDK---TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF-  104 (432)
Q Consensus        29 ~~h~~~V~~~~fsp---~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~-  104 (432)
                      -.|+.+|-.++|||   +|-+|++++.|+.-.+-+-+++.-+                           .+|.||+.+. 
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi---------------------------gtfeghkgavw   63 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI---------------------------GTFEGHKGAVW   63 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE---------------------------EeeeccCccee
Confidence            36899999999985   8889999999998877666665422                           3333333110 


Q ss_pred             ----------------------------cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecC
Q 014005          105 ----------------------------DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD  156 (432)
Q Consensus       105 ----------------------------~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  156 (432)
                                                  |-+-+++++.-|..++|  +.|.++|++|+.++.+++||++..+. ...++.
T Consensus        64 ~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~A-pp~E~~  140 (334)
T KOG0278|consen   64 SATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKA-PPKEIS  140 (334)
T ss_pred             eeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEe--cccchhhhccchHHHhhhhhccCCCC-Cchhhc
Confidence                                        22334455677899999  89999999999999999999987652 344556


Q ss_pred             CCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE
Q 014005          157 HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA  236 (432)
Q Consensus       157 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  236 (432)
                      .|+           +.|+.+.|....+.+.+...  +++|++||.+   ++..++.+  .....|+++.++++|+++.++
T Consensus       141 ght-----------g~Ir~v~wc~eD~~iLSSad--d~tVRLWD~r---Tgt~v~sL--~~~s~VtSlEvs~dG~ilTia  202 (334)
T KOG0278|consen  141 GHT-----------GGIRTVLWCHEDKCILSSAD--DKTVRLWDHR---TGTEVQSL--EFNSPVTSLEVSQDGRILTIA  202 (334)
T ss_pred             CCC-----------CcceeEEEeccCceEEeecc--CCceEEEEec---cCcEEEEE--ecCCCCcceeeccCCCEEEEe
Confidence            666           89999999988888888766  9999999999   77788776  345689999999999999999


Q ss_pred             cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee-ccccc
Q 014005          237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAE  315 (432)
Q Consensus       237 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~  315 (432)
                      ..+.|..||.. .-..++.+        .....|.+..++|+. ..+++|+.|..++.||..++..    +..+ ++|  
T Consensus       203 ~gssV~Fwdak-sf~~lKs~--------k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeE----i~~~nkgh--  266 (334)
T KOG0278|consen  203 YGSSVKFWDAK-SFGLLKSY--------KMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEE----IGSYNKGH--  266 (334)
T ss_pred             cCceeEEeccc-cccceeec--------cCccccccccccCCC-ceEEecCcceEEEEEeccCCce----eeecccCC--
Confidence            99999999999 55555544        233458899999998 9999999999999999999987    3444 676  


Q ss_pred             ccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEecCcce
Q 014005          316 SHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRYEPVM  359 (432)
Q Consensus       316 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~~~~~  359 (432)
                                 .++|.++.|+|||..-|+|+. |+|++|...+.+
T Consensus       267 -----------~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  267 -----------FGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             -----------CCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence                       799999999999999999865 999999994433

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.2e-26  Score=209.35  Aligned_cols=236  Identities=15%  Similarity=0.208  Sum_probs=200.7

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeec-CCccccccchh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSL  110 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-h~~~~~~~~~~  110 (432)
                      .+.|+++.|+++|.+||+|..+|.|.|||....+..                           ..+.+ |.         
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~---------------------------~~~~~~h~---------  260 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT---------------------------RTLRGSHA---------  260 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc---------------------------ccccCCcC---------
Confidence            689999999999999999999999999999887644                           56666 77         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                         ..|.+++|  .  +..+.+|+.|+.|..+|++..+...- .+..|.           ..|..+.|++++.++++|+.
T Consensus       261 ---~rvg~laW--~--~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~-----------qeVCgLkws~d~~~lASGgn  321 (484)
T KOG0305|consen  261 ---SRVGSLAW--N--SSVLSSGSRDGKILNHDVRISQHVVS-TLQGHR-----------QEVCGLKWSPDGNQLASGGN  321 (484)
T ss_pred             ---ceeEEEec--c--CceEEEecCCCcEEEEEEecchhhhh-hhhccc-----------ceeeeeEECCCCCeeccCCC
Confidence               99999999  3  67899999999999999987763222 355555           78899999999999999999


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-CCEEEEE---cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~---~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                        |+.+.|||..   ...++..+ ..|...|.+++|+|- ...||+|   .|+.|++||.. ++..+..+        .-
T Consensus       322 --DN~~~Iwd~~---~~~p~~~~-~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~-~g~~i~~v--------dt  386 (484)
T KOG0305|consen  322 --DNVVFIWDGL---SPEPKFTF-TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN-TGARIDSV--------DT  386 (484)
T ss_pred             --ccceEeccCC---CccccEEE-eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC-CCcEeccc--------cc
Confidence              9999999996   66677777 899999999999994 5577776   69999999999 67776653        44


Q ss_pred             CcceEEEEEcCCCCcEEEEE--eCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          267 TEVITSAEFHPIYCNLLAYS--SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      .+.|+++.|++.. +-|+++  ..++.|.||+..+.+.    +..+.+|             ...|..+++||||..+++
T Consensus       387 gsQVcsL~Wsk~~-kEi~sthG~s~n~i~lw~~ps~~~----~~~l~gH-------------~~RVl~la~SPdg~~i~t  448 (484)
T KOG0305|consen  387 GSQVCSLIWSKKY-KELLSTHGYSENQITLWKYPSMKL----VAELLGH-------------TSRVLYLALSPDGETIVT  448 (484)
T ss_pred             CCceeeEEEcCCC-CEEEEecCCCCCcEEEEeccccce----eeeecCC-------------cceeEEEEECCCCCEEEE
Confidence            5779999999998 545543  3677999999998665    6888897             889999999999999999


Q ss_pred             e-eCCeEEEEec
Q 014005          345 R-DYMNLKVFRY  355 (432)
Q Consensus       345 ~-~~~~i~iwd~  355 (432)
                      | .|.++++|++
T Consensus       449 ~a~DETlrfw~~  460 (484)
T KOG0305|consen  449 GAADETLRFWNL  460 (484)
T ss_pred             ecccCcEEeccc
Confidence            7 6699999999

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=7.9e-26  Score=193.96  Aligned_cols=279  Identities=14%  Similarity=0.173  Sum_probs=216.1

Q ss_pred             CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      ....|.++...|....+++|+.|.++.++|...++.+                           ..++||+         
T Consensus       218 ~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l---------------------------~~~~Gh~---------  261 (506)
T KOG0289|consen  218 STPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL---------------------------ATLKGHT---------  261 (506)
T ss_pred             CCCCeeEEeecCCCCcceecCCCCceEEEecchhhhh---------------------------hhccCcc---------
Confidence            3457899999988788999999999999999887654                           7899999         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                         ..|+.+.+  +++...+++++.|..|++|.........  ....|.           ++|+.+..+|.+.|+...+.
T Consensus       262 ---kki~~v~~--~~~~~~v~~aSad~~i~vws~~~~s~~~--~~~~h~-----------~~V~~ls~h~tgeYllsAs~  323 (506)
T KOG0289|consen  262 ---KKITSVKF--HKDLDTVITASADEIIRVWSVPLSSEPT--SSRPHE-----------EPVTGLSLHPTGEYLLSASN  323 (506)
T ss_pred             ---eEEEEEEe--ccchhheeecCCcceEEeeccccccCcc--cccccc-----------ccceeeeeccCCcEEEEecC
Confidence               99999999  8899999999999999999986554222  122233           78999999999999999998


Q ss_pred             eccceEEEEeecccccceeeEEeec-CCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          191 TENMATKIANVGNSVHARCQKVYPH-AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                        ++...+.|++   ++.++..... ...-.+++.+|+|||.+|.+| .|+.+++||+. ......       .+.+|.+
T Consensus       324 --d~~w~Fsd~~---~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk-s~~~~a-------~Fpght~  390 (506)
T KOG0289|consen  324 --DGTWAFSDIS---SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK-SQTNVA-------KFPGHTG  390 (506)
T ss_pred             --CceEEEEEcc---CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC-Cccccc-------cCCCCCC
Confidence              9999999998   6666655422 233468999999999999999 99999999999 444444       3489999


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-C
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~  347 (432)
                      +|..++|+.+| .+||++..|+.|++||+|.-+.    .+++..- +           ...+.++.|.+.|.||+.++ +
T Consensus       391 ~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n----~kt~~l~-~-----------~~~v~s~~fD~SGt~L~~~g~~  453 (506)
T KOG0289|consen  391 PVKAISFSENG-YWLATAADDGSVKLWDLRKLKN----FKTIQLD-E-----------KKEVNSLSFDQSGTYLGIAGSD  453 (506)
T ss_pred             ceeEEEeccCc-eEEEEEecCCeEEEEEehhhcc----cceeecc-c-----------cccceeEEEcCCCCeEEeecce
Confidence            99999999999 9999999999999999997554    3555441 1           24699999999999999874 3


Q ss_pred             CeEEEEec-----CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          348 MNLKVFRY-----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       348 ~~i~iwd~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      =.|++++-     ..+..+..|..           ......++....++++|+.|..+++|.
T Consensus       454 l~Vy~~~k~~k~W~~~~~~~~~sg-----------~st~v~Fg~~aq~l~s~smd~~l~~~a  504 (506)
T KOG0289|consen  454 LQVYICKKKTKSWTEIKELADHSG-----------LSTGVRFGEHAQYLASTSMDAILRLYA  504 (506)
T ss_pred             eEEEEEecccccceeeehhhhccc-----------ccceeeecccceEEeeccchhheEEee
Confidence            44444442     23333333321           222233444556789999999888874

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=2e-26  Score=210.16  Aligned_cols=244  Identities=17%  Similarity=0.284  Sum_probs=208.2

Q ss_pred             CcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  112 (432)
                      +.+.|..|-|.++++++|...|.+.+||+....+.                           .++++|+           
T Consensus       413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~---------------------------Eti~AHd-----------  454 (888)
T KOG0306|consen  413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLV---------------------------ETIRAHD-----------  454 (888)
T ss_pred             ccEEEEEecCCCceEEEeccCCceEEEEeehhhhh---------------------------hhhhccc-----------
Confidence            37899999999999999999999999999887644                           5677899           


Q ss_pred             hcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccC-----cceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-----QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                       +.|++++.  +||+..+++|+.|.+|++||..-     +..+++..+...      ....-...|.++.++|++++++.
T Consensus       455 -gaIWsi~~--~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~------rtLel~ddvL~v~~Spdgk~LaV  525 (888)
T KOG0306|consen  455 -GAIWSISL--SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT------RTLELEDDVLCVSVSPDGKLLAV  525 (888)
T ss_pred             -cceeeeee--cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc------eEEeccccEEEEEEcCCCcEEEE
Confidence             99999999  89999999999999999999742     111111111100      01112478999999999999999


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      +-.  |+++++|-++   +.+..-.+ -+|.-+|.|+..+||+..+++| .|.+|++|-++ -+.|-+.+       -+|
T Consensus       526 sLL--dnTVkVyflD---tlKFflsL-YGHkLPV~smDIS~DSklivTgSADKnVKiWGLd-FGDCHKS~-------fAH  591 (888)
T KOG0306|consen  526 SLL--DNTVKVYFLD---TLKFFLSL-YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD-FGDCHKSF-------FAH  591 (888)
T ss_pred             Eec--cCeEEEEEec---ceeeeeee-cccccceeEEeccCCcCeEEeccCCCceEEeccc-cchhhhhh-------hcc
Confidence            999  9999999998   66666666 7999999999999999999999 99999999999 56777755       899


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~  346 (432)
                      ...|+++.|-|.. .++.+++.|+.|+-||-.+-+.    ++.+.+|             ...|++++.+|+|.++++++
T Consensus       592 dDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe~----iq~L~~H-------------~~ev~cLav~~~G~~vvs~s  653 (888)
T KOG0306|consen  592 DDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFEE----IQKLDGH-------------HSEVWCLAVSPNGSFVVSSS  653 (888)
T ss_pred             cCceeEEEEcccc-eeEEEecCcceEEeechhhhhh----heeeccc-------------hheeeeeEEcCCCCeEEecc
Confidence            9999999999988 9999999999999999887665    6889997             78999999999999999975


Q ss_pred             C-CeEEEEec
Q 014005          347 Y-MNLKVFRY  355 (432)
Q Consensus       347 ~-~~i~iwd~  355 (432)
                      . ..|++|.-
T Consensus       654 hD~sIRlwE~  663 (888)
T KOG0306|consen  654 HDKSIRLWER  663 (888)
T ss_pred             CCceeEeeec
Confidence            4 99999988

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.8e-26  Score=190.46  Aligned_cols=294  Identities=12%  Similarity=0.128  Sum_probs=226.0

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ..+|.+.|+.++-......+.+++.|.+-+||.+++++                           |+.++.||.      
T Consensus       144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~---------------------------CL~~Y~GH~------  190 (481)
T KOG0300|consen  144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA---------------------------CLATYTGHT------  190 (481)
T ss_pred             hcccccceeeehhhcCCcceeecccccceeEEeecccc---------------------------ceeeecccc------
Confidence            34799999999998888899999999999999999986                           558999999      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccC----cceeeeeecCC------C----Cc-------------
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD----QKVKKIKEMDH------F----PF-------------  160 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~------~----~~-------------  160 (432)
                            +.|++|.|  ++.+.++++++.|++..||...-    .+......+..      +    ++             
T Consensus       191 ------GSVNsikf--h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR  262 (481)
T KOG0300|consen  191 ------GSVNSIKF--HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR  262 (481)
T ss_pred             ------cceeeEEe--ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence                  99999999  88999999999999999998321    00000000000      0    00             


Q ss_pred             --cccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c
Q 014005          161 --VSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D  237 (432)
Q Consensus       161 --~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~  237 (432)
                        ++++  .-..+.|.+..|-..+..+++++.  |.+..+||++   ++..+..+ .+|....+.++-+|..++++++ .
T Consensus       263 vPl~~l--tgH~~vV~a~dWL~gg~Q~vTaSW--DRTAnlwDVE---tge~v~~L-tGHd~ELtHcstHptQrLVvTsSr  334 (481)
T KOG0300|consen  263 VPLMRL--TGHRAVVSACDWLAGGQQMVTASW--DRTANLWDVE---TGEVVNIL-TGHDSELTHCSTHPTQRLVVTSSR  334 (481)
T ss_pred             eeeeee--eccccceEehhhhcCcceeeeeec--cccceeeeec---cCceeccc-cCcchhccccccCCcceEEEEecc
Confidence              0000  012356677778888899999999  9999999999   88899999 8999999999999999999999 9


Q ss_pred             CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccccc
Q 014005          238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH  317 (432)
Q Consensus       238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~  317 (432)
                      |.+.++||.+-.-..+..|       ++|...|+++.|.-+.  .+++|+.|.+|++||++..+-.   +.++..     
T Consensus       335 DtTFRLWDFReaI~sV~VF-------QGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRsp---lATIRt-----  397 (481)
T KOG0300|consen  335 DTTFRLWDFREAIQSVAVF-------QGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSP---LATIRT-----  397 (481)
T ss_pred             CceeEeccchhhcceeeee-------cccccceeEEEEecCC--ceeecCCCceEEEeeeccccCc---ceeeec-----
Confidence            9999999999444556665       9999999999999875  5889999999999999987654   566666     


Q ss_pred             CCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec--Cccee-----EeecceeeeehhhhhcccccccccceeeE
Q 014005          318 GSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY--EPVMT-----LSFCGIYVWILRQLQHSRFMSIYALSCVI  389 (432)
Q Consensus       318 ~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (432)
                               ..+++.++.+..+..||.--| ..|++||+  ..+..     -+.|..++-...++...+.|.        
T Consensus       398 ---------dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cn--------  460 (481)
T KOG0300|consen  398 ---------DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACN--------  460 (481)
T ss_pred             ---------CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccc--------
Confidence                     578999999998889998755 99999999  22222     234444333333333333443        


Q ss_pred             EEEeecccceeeeecc
Q 014005          390 YIITTLYLINLSALSA  405 (432)
Q Consensus       390 ~~~~g~~~~~i~~~~~  405 (432)
                       +.++.+|..+.-|..
T Consensus       461 -LftcGFDR~v~gW~i  475 (481)
T KOG0300|consen  461 -LFTCGFDRMVAGWKI  475 (481)
T ss_pred             -cccccccceeeeeEe
Confidence             566778888887774

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=2e-25  Score=208.80  Aligned_cols=236  Identities=14%  Similarity=0.134  Sum_probs=178.3

Q ss_pred             ccccCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           27 EELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        27 ~~~~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ....|.+.|++++|+| ++++|++|+.|++|+|||+.++.....                    ....+..+.+|.    
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~--------------------~~~~l~~L~gH~----  125 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN--------------------ISDPIVHLQGHT----  125 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc--------------------cCcceEEecCCC----
Confidence            3457999999999999 889999999999999999976532100                    112446788999    


Q ss_pred             ccchhhhhcceeEEEEEEcCCC-CEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          106 YLKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                              ..|.+++|  +|++ .+|++++.|++|++||+.+++..  ..+..|.           ..|.+++|++++..
T Consensus       126 --------~~V~~l~f--~P~~~~iLaSgs~DgtVrIWDl~tg~~~--~~l~~h~-----------~~V~sla~spdG~l  182 (493)
T PTZ00421        126 --------KKVGIVSF--HPSAMNVLASAGADMVVNVWDVERGKAV--EVIKCHS-----------DQITSLEWNLDGSL  182 (493)
T ss_pred             --------CcEEEEEe--CcCCCCEEEEEeCCCEEEEEECCCCeEE--EEEcCCC-----------CceEEEEEECCCCE
Confidence                    99999999  7764 68999999999999999987633  3334444           67999999999999


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCC-eeEEEeCCCCCEEEEE-----cCCeEEEEeCCCCCceeeEeec
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFN-INSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDM  258 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~-----~d~~i~lwd~~~~~~~~~~~~~  258 (432)
                      +++++.  |+.|++||++   +++.+..+ .+|.+. ...+.|.+++..++++     .|+.|++||++.....+.... 
T Consensus       183 Latgs~--Dg~IrIwD~r---sg~~v~tl-~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~-  255 (493)
T PTZ00421        183 LCTTSK--DKKLNIIDPR---DGTIVSSV-EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD-  255 (493)
T ss_pred             EEEecC--CCEEEEEECC---CCcEEEEE-ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec-
Confidence            999998  9999999998   66677777 677654 4467788887777653     278999999985444444331 


Q ss_pred             CCCCcCCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC
Q 014005          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (432)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~  337 (432)
                           ......+....|++++ ++|++++ .|+.|++||+++++.    .......            ...++..++|.|
T Consensus       256 -----~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~~~----~~~~~~~------------s~~~~~g~~~~p  313 (493)
T PTZ00421        256 -----LDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNERL----TFCSSYS------------SVEPHKGLCMMP  313 (493)
T ss_pred             -----cCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCCce----EEEeecc------------CCCCCcceEecc
Confidence                 1233456677899998 8888877 599999999998775    2333221            134677888888


Q ss_pred             C
Q 014005          338 D  338 (432)
Q Consensus       338 d  338 (432)
                      .
T Consensus       314 k  314 (493)
T PTZ00421        314 K  314 (493)
T ss_pred             c
Confidence            5

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.3e-26  Score=198.47  Aligned_cols=239  Identities=15%  Similarity=0.233  Sum_probs=199.4

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      .+.|+++.|-.||++||+|+..|.|+|||..+...                           +..+.+|+          
T Consensus        68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i---------------------------LR~~~ah~----------  110 (487)
T KOG0310|consen   68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI---------------------------LRQLYAHQ----------  110 (487)
T ss_pred             ccceeEEEeecCCeEEEccCCcCcEEEeccccHHH---------------------------HHHHhhcc----------
Confidence            56799999999999999999999999999655332                           26788999          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-ceeccee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLEW  190 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~  190 (432)
                        .+|..+.|+| .++..|++|+.|+.+++||+.+...  ...+..|.           ..|++.+++|... .+++|+.
T Consensus       111 --apv~~~~f~~-~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~ht-----------DYVR~g~~~~~~~hivvtGsY  174 (487)
T KOG0310|consen  111 --APVHVTKFSP-QDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHT-----------DYVRCGDISPANDHIVVTGSY  174 (487)
T ss_pred             --CceeEEEecc-cCCeEEEecCCCceEEEEEcCCcEE--EEEecCCc-----------ceeEeeccccCCCeEEEecCC
Confidence              9999999953 4566788889999999999998773  55666777           8999999999865 7788999


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                        ||.|++||.+...  ..+..+  .|..+|..+.+-|.|..++++....+++||+-..++.+..       +..|...|
T Consensus       175 --Dg~vrl~DtR~~~--~~v~el--nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~-------~~~H~KtV  241 (487)
T KOG0310|consen  175 --DGKVRLWDTRSLT--SRVVEL--NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS-------MFNHNKTV  241 (487)
T ss_pred             --CceEEEEEeccCC--ceeEEe--cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh-------hhcccceE
Confidence              9999999998431  444444  7889999999999999999999999999999955554432       25599999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCe
Q 014005          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN  349 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~  349 (432)
                      +|+++..++ ..|++|+-|+.|++||+.+.+.    +..+.-              .++|.+++.+||++.++.| ++|.
T Consensus       242 TcL~l~s~~-~rLlS~sLD~~VKVfd~t~~Kv----v~s~~~--------------~~pvLsiavs~dd~t~viGmsnGl  302 (487)
T KOG0310|consen  242 TCLRLASDS-TRLLSGSLDRHVKVFDTTNYKV----VHSWKY--------------PGPVLSIAVSPDDQTVVIGMSNGL  302 (487)
T ss_pred             EEEEeecCC-ceEeecccccceEEEEccceEE----EEeeec--------------ccceeeEEecCCCceEEEecccce
Confidence            999999998 9999999999999999887765    566665              5899999999999999998 6677


Q ss_pred             EEEEec
Q 014005          350 LKVFRY  355 (432)
Q Consensus       350 i~iwd~  355 (432)
                      +.+=+.
T Consensus       303 v~~rr~  308 (487)
T KOG0310|consen  303 VSIRRR  308 (487)
T ss_pred             eeeehh
Confidence            766654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=8.2e-26  Score=186.66  Aligned_cols=287  Identities=15%  Similarity=0.145  Sum_probs=188.5

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc-ccccCCccee-------------
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT-STSHPEYRYK-------------   94 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~-------------   94 (432)
                      -.|.+.|++++|+.||++|||++.|++|+||+++.-...  .+.+++.--..+... +.|.|..+.+             
T Consensus        83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~--eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK--EHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY  160 (420)
T ss_pred             hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh--hhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence            468999999999999999999999999999998764321  122222211222222 4555521111             


Q ss_pred             ---eeeec----CCccccccchh-hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccc
Q 014005           95 ---TEFQS----HEPEFDYLKSL-EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT  166 (432)
Q Consensus        95 ---~~~~~----h~~~~~~~~~~-~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  166 (432)
                         ..-.|    |....|.+.-- .+.-.|..+-.  ..++.++++++.|..|.+|++++..+..+-..+          
T Consensus       161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lkGq~L~~idtnq----------  228 (420)
T KOG2096|consen  161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQ----------  228 (420)
T ss_pred             EeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecCCceeeeecccc----------
Confidence               10000    00000100000 01123445555  667889999999999999999944333332222          


Q ss_pred             cccccccccccCCCCCcceecceeeccceEEEEeecccccc-----eeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe
Q 014005          167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA-----RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR  240 (432)
Q Consensus       167 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~  240 (432)
                          ..-...+.+|+|++++.+++  --.|++|.+--...+     .....+ .+|...|..++|+++.+.+++. .||+
T Consensus       229 ----~~n~~aavSP~GRFia~~gF--TpDVkVwE~~f~kdG~fqev~rvf~L-kGH~saV~~~aFsn~S~r~vtvSkDG~  301 (420)
T KOG2096|consen  229 ----SSNYDAAVSPDGRFIAVSGF--TPDVKVWEPIFTKDGTFQEVKRVFSL-KGHQSAVLAAAFSNSSTRAVTVSKDGK  301 (420)
T ss_pred             ----ccccceeeCCCCcEEEEecC--CCCceEEEEEeccCcchhhhhhhhee-ccchhheeeeeeCCCcceeEEEecCCc
Confidence                44567889999999999999  557889986432222     223345 7999999999999999999999 9999


Q ss_pred             EEEEeCCCCC---ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccccc
Q 014005          241 INLWNLEISD---QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH  317 (432)
Q Consensus       241 i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~  317 (432)
                      +++||.+..-   +--+++..-+..+..-.+....++++|.+ +.||.+. ...++++..++|+.    ...++.-    
T Consensus       302 wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~s~-gs~l~~~~se~g~~----~~~~e~~----  371 (420)
T KOG2096|consen  302 WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-DSLAVSF-GSDLKVFASEDGKD----YPELEDI----  371 (420)
T ss_pred             EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-cEEEeec-CCceEEEEcccCcc----chhHHHh----
Confidence            9999986211   11111111111122333445589999999 8887554 55799999998875    3444431    


Q ss_pred             CCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEe
Q 014005          318 GSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFR  354 (432)
Q Consensus       318 ~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd  354 (432)
                              |...|.+++|+++|+++++++|..+++..
T Consensus       372 --------h~~~Is~is~~~~g~~~atcGdr~vrv~~  400 (420)
T KOG2096|consen  372 --------HSTTISSISYSSDGKYIATCGDRYVRVIR  400 (420)
T ss_pred             --------hcCceeeEEecCCCcEEeeecceeeeeec
Confidence                    26899999999999999999988888775

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=5e-25  Score=207.06  Aligned_cols=227  Identities=17%  Similarity=0.207  Sum_probs=165.4

Q ss_pred             ecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCC-CC
Q 014005           50 GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GS  128 (432)
Q Consensus        50 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~-~~  128 (432)
                      |+.++.|++|+.....                           .+..+.+|.            +.|.+++|  +|+ +.
T Consensus        50 GG~~gvI~L~~~~r~~---------------------------~v~~L~gH~------------~~V~~laf--sP~~~~   88 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP---------------------------PVIKLKGHT------------SSILDLQF--NPCFSE   88 (568)
T ss_pred             CCceeEEEeeecCCCc---------------------------eEEEEcCCC------------CCEEEEEE--cCCCCC
Confidence            5567788888875532                           346788999            99999999  775 78


Q ss_pred             EEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccce
Q 014005          129 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR  208 (432)
Q Consensus       129 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~  208 (432)
                      +|++|+.|++|++||+.++.... ..                                                   ...
T Consensus        89 lLASgS~DgtIrIWDi~t~~~~~-~~---------------------------------------------------i~~  116 (568)
T PTZ00420         89 ILASGSEDLTIRVWEIPHNDESV-KE---------------------------------------------------IKD  116 (568)
T ss_pred             EEEEEeCCCeEEEEECCCCCccc-cc---------------------------------------------------ccc
Confidence            99999999999999997543100 00                                                   011


Q ss_pred             eeEEeecCCCCCeeEEEeCCCCCEE-EEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEE
Q 014005          209 CQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  286 (432)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~~~~~~~l-~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  286 (432)
                      ++..+ .+|...|.+++|+|++..+ +++ .|++|++||++ .++....+       . |...|.+++|+|+| .+|+++
T Consensus       117 p~~~L-~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~-tg~~~~~i-------~-~~~~V~SlswspdG-~lLat~  185 (568)
T PTZ00420        117 PQCIL-KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE-NEKRAFQI-------N-MPKKLSSLKWNIKG-NLLSGT  185 (568)
T ss_pred             ceEEe-ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC-CCcEEEEE-------e-cCCcEEEEEECCCC-CEEEEE
Confidence            22233 6788999999999998765 577 89999999999 45444433       2 45679999999999 999999


Q ss_pred             eCCCeEEEEEccccccccccceeecccccccCCccceeeeecc-----eeEEEEcCCCCEEEE-eeC----CeEEEEec-
Q 014005          287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS-----ISDIKFANDGQHLLS-RDY----MNLKVFRY-  355 (432)
Q Consensus       287 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~-----v~~~~~s~dg~~l~s-~~~----~~i~iwd~-  355 (432)
                      +.|+.|+|||+++++.    +..+.+|             .+.     +....|++++.+|++ |.+    +.|+|||+ 
T Consensus       186 s~D~~IrIwD~Rsg~~----i~tl~gH-------------~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr  248 (568)
T PTZ00420        186 CVGKHMHIIDPRKQEI----ASSFHIH-------------DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK  248 (568)
T ss_pred             ecCCEEEEEECCCCcE----EEEEecc-------------cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence            9999999999999876    5778887             333     233456789888887 433    37999999 


Q ss_pred             ---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005          356 ---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       356 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                         +++..+..+..         ...+...+..+...++++|+.|++|++|+..
T Consensus       249 ~~~~pl~~~~ld~~---------~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~  293 (568)
T PTZ00420        249 NTTSALVTMSIDNA---------SAPLIPHYDESTGLIYLIGKGDGNCRYYQHS  293 (568)
T ss_pred             CCCCceEEEEecCC---------ccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence               45555544331         2233333334445567899999999999943

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.3e-25  Score=213.31  Aligned_cols=263  Identities=14%  Similarity=0.145  Sum_probs=199.6

Q ss_pred             ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      ....|.+.|+|+.|+|||++||+|+.|+.|.||...........+.     .+.    ..-...++++..+.+|.     
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs-----~g~----~~~vE~wk~~~~l~~H~-----  129 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGS-----TGG----AKNVESWKVVSILRGHD-----  129 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccc-----ccc----ccccceeeEEEEEecCC-----
Confidence            3457899999999999999999999999999999874100000000     000    00112578888999999     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                             ..|.+++|  +|++.+|++++.|++|.+|+..+.+  .+..+..|.           +.|..+.|+|-|+|++
T Consensus       130 -------~DV~Dv~W--sp~~~~lvS~s~DnsViiwn~~tF~--~~~vl~~H~-----------s~VKGvs~DP~Gky~A  187 (942)
T KOG0973|consen  130 -------SDVLDVNW--SPDDSLLVSVSLDNSVIIWNAKTFE--LLKVLRGHQ-----------SLVKGVSWDPIGKYFA  187 (942)
T ss_pred             -------Cccceecc--CCCccEEEEecccceEEEEccccce--eeeeeeccc-----------ccccceEECCccCeee
Confidence                   99999999  8999999999999999999998874  555666666           8999999999999999


Q ss_pred             cceeeccceEEEEeecccccceeeEEeecC------CCCCeeEEEeCCCCCEEEEE-c----CCeEEEEeCCCCCceeeE
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYPHA------HDFNINSISNNSDCETFVSA-D----DLRINLWNLEISDQCFNI  255 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~-~----d~~i~lwd~~~~~~~~~~  255 (432)
                      +.+.  |+++++|+..   +..+.+.+ .+      ......-+.|+|||++|++. .    -..+.|.+.+ +-..-. 
T Consensus       188 Sqsd--Drtikvwrt~---dw~i~k~I-t~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~-tWk~~~-  259 (942)
T KOG0973|consen  188 SQSD--DRTLKVWRTS---DWGIEKSI-TKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG-TWKVDK-  259 (942)
T ss_pred             eecC--CceEEEEEcc---cceeeEee-ccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC-Cceeee-
Confidence            9999  9999999977   45555554 22      23467789999999999987 2    2356666665 222222 


Q ss_pred             eecCCCCcCCCCcceEEEEEcCC--------C----Cc----EEEEEeCCCeEEEEEccccccccccceeecccccccCC
Q 014005          256 VDMKPSNMDDLTEVITSAEFHPI--------Y----CN----LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS  319 (432)
Q Consensus       256 ~~~~~~~~~~~~~~v~~~~~~p~--------~----~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~  319 (432)
                            .+-+|.+++.+++|+|.        |    +.    .+|+|+.|++|.||.....++.. .+..+.        
T Consensus       260 ------~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~-vi~~lf--------  324 (942)
T KOG0973|consen  260 ------DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF-VIHNLF--------  324 (942)
T ss_pred             ------eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh-hhhhhh--------
Confidence                  24799999999999982        1    11    78999999999999986555421 122222        


Q ss_pred             ccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005          320 KSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       320 ~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~  355 (432)
                             ..+|.+++|+|||..|..++ ||+|.+..+
T Consensus       325 -------~~SI~DmsWspdG~~LfacS~DGtV~~i~F  354 (942)
T KOG0973|consen  325 -------NKSIVDMSWSPDGFSLFACSLDGTVALIHF  354 (942)
T ss_pred             -------cCceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence                   35899999999999887765 499999998

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=7.5e-27  Score=198.99  Aligned_cols=286  Identities=15%  Similarity=0.184  Sum_probs=217.1

Q ss_pred             CCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (432)
Q Consensus        25 ~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~  104 (432)
                      ....-.|.+.|..+.|-++...|++|+.|..|++|+....+                         +..+.++.|..   
T Consensus       168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-------------------------~~~~~tLaGs~---  219 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-------------------------SELISTLAGSL---  219 (459)
T ss_pred             hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-------------------------hhhhhhhhccC---
Confidence            33445678899999999998999999999999999988765                         22445677776   


Q ss_pred             cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                               +.|+++.|  .+++..++.++.|+.+++|++...+..  ..+.+|.           +.|.++.|......
T Consensus       220 ---------g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~--~TLsGHt-----------dkVt~ak~~~~~~~  275 (459)
T KOG0288|consen  220 ---------GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLR--HTLSGHT-----------DKVTAAKFKLSHSR  275 (459)
T ss_pred             ---------CCcceeee--cCCCceEEeecCCCceeeeeccchhhh--hhhcccc-----------cceeeehhhccccc
Confidence                     88999999  899999999999999999999887733  3344455           78889988887777


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (432)
                      +++|+.  |.++++||+.   ...|.+++  -..+.++.|+.+  ...+++| .|++|++||.+ ...+...+       
T Consensus       276 vVsgs~--DRtiK~WDl~---k~~C~kt~--l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~R-s~~~~~sv-------  338 (459)
T KOG0288|consen  276 VVSGSA--DRTIKLWDLQ---KAYCSKTV--LPGSQCNDIVCS--ISDVISGHFDKKVRFWDIR-SADKTRSV-------  338 (459)
T ss_pred             eeeccc--cchhhhhhhh---hhheeccc--cccccccceEec--ceeeeecccccceEEEecc-CCceeeEe-------
Confidence            888888  9999999999   67787775  234556666665  5568889 99999999999 55555544       


Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  343 (432)
                      +.+ +.|+++..++++ ..|.+++.|.++.+.|+++.+.    ...+..-       .++.  ....+.+.|||++.|+|
T Consensus       339 ~~g-g~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI----~~~~sA~-------g~k~--asDwtrvvfSpd~~Yva  403 (459)
T KOG0288|consen  339 PLG-GRVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEI----RQTFSAE-------GFKC--ASDWTRVVFSPDGSYVA  403 (459)
T ss_pred             ecC-cceeeEeeccCC-eEEeeecCCCceeeeecccccE----EEEeecc-------cccc--ccccceeEECCCCceee
Confidence            344 489999999999 8888889999999999998765    3444431       1111  23488999999999999


Q ss_pred             EeeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeee
Q 014005          344 SRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSAL  403 (432)
Q Consensus       344 s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~  403 (432)
                      +|+. |.|+||++   ++.+.+.....         ...+..+..+....++++.+.++.+.+|
T Consensus       404 AGS~dgsv~iW~v~tgKlE~~l~~s~s---------~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  404 AGSADGSVYIWSVFTGKLEKVLSLSTS---------NAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             eccCCCcEEEEEccCceEEEEeccCCC---------CcceEEEEEcCCCchhhcccCCcceEec
Confidence            9854 99999999   55555554432         1123333333344467777777777777

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=1e-25  Score=194.59  Aligned_cols=271  Identities=14%  Similarity=0.211  Sum_probs=199.6

Q ss_pred             ccCCCcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           29 LQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      +.|.+.|+.+.+-|... ++|+++..+.+.|||.........                 ...+.++-..+.||+      
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~-----------------~~~~~~Pdl~L~gH~------  177 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK-----------------ASGECRPDLRLKGHE------  177 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc-----------------ccccCCCceEEEeec------
Confidence            67899999999999765 567788889999999876432100                 000233445788998      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-----eeeeeecCCCCccccccccccccccccccCCCCC
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-----VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  182 (432)
                            +.=++++|.+. ..-.+++++.|++|.+||+....     ......+..|.           ..|.+++|++..
T Consensus       178 ------~eg~glsWn~~-~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~-----------~~VeDV~~h~~h  239 (422)
T KOG0264|consen  178 ------KEGYGLSWNRQ-QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE-----------DVVEDVAWHPLH  239 (422)
T ss_pred             ------ccccccccccc-cceeEeeccCCCcEEEEeccccccCCccccceEEeecCC-----------cceehhhccccc
Confidence                  65678999532 23378999999999999997543     22333445555           889999999876


Q ss_pred             ccee-cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecC
Q 014005          183 AHGY-HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMK  259 (432)
Q Consensus       183 ~~~~-~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~  259 (432)
                      ..+. +.+.  |+.+.|||.+.. +.++.+.. .+|.+.++|++|+|- +..||+| .|++|.+||+|....++..+   
T Consensus       240 ~~lF~sv~d--d~~L~iwD~R~~-~~~~~~~~-~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~---  312 (422)
T KOG0264|consen  240 EDLFGSVGD--DGKLMIWDTRSN-TSKPSHSV-KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF---  312 (422)
T ss_pred             hhhheeecC--CCeEEEEEcCCC-CCCCcccc-cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec---
Confidence            6554 3444  899999999974 55666666 899999999999995 5566788 89999999999777766655   


Q ss_pred             CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccc-cCCccceeeeecceeEEEEcCC
Q 014005          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-HGSKSFFTEIIASISDIKFAND  338 (432)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~-~~~~~~~~~~~~~v~~~~~s~d  338 (432)
                          .+|...|.++.|+|....+||+++.|+++.+||+..-..    .+.-+.-... |...-.-.+|...|.++.|+|+
T Consensus       313 ----e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~----eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~  384 (422)
T KOG0264|consen  313 ----EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE----EQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPN  384 (422)
T ss_pred             ----cCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccc----ccChhhhccCCcceeEEecCcccccccccCCCC
Confidence                999999999999999889999999999999999975322    1110110000 1111122456899999999999


Q ss_pred             CCEEEE-e-eCCeEEEEec
Q 014005          339 GQHLLS-R-DYMNLKVFRY  355 (432)
Q Consensus       339 g~~l~s-~-~~~~i~iwd~  355 (432)
                      ..++++ . .|+.+.||++
T Consensus       385 ePW~I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  385 EPWTIASVAEDNILQIWQM  403 (422)
T ss_pred             CCeEEEEecCCceEEEeec
Confidence            887765 3 5599999998

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=6.9e-27  Score=203.08  Aligned_cols=267  Identities=15%  Similarity=0.172  Sum_probs=203.9

Q ss_pred             cchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccc
Q 014005            3 LNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMD   82 (432)
Q Consensus         3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   82 (432)
                      |+++-+-....|.+-.  ..+..-.-..|..+|..++|+++|..+++++.|+.|++||.++++..               
T Consensus       231 LS~gmD~~vklW~vy~--~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~---------------  293 (503)
T KOG0282|consen  231 LSGGMDGLVKLWNVYD--DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL---------------  293 (503)
T ss_pred             EecCCCceEEEEEEec--CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE---------------
Confidence            3444444555665442  11122233478999999999999999999999999999999998743               


Q ss_pred             ccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCC-CEEEEEeCCCeEEEEEccCcceeeeeecCCCCcc
Q 014005           83 FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFV  161 (432)
Q Consensus        83 ~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  161 (432)
                                  ..+...             ..++++.|  +|++ +.|++|+.|+.|+.||++++++  +.++..|-  
T Consensus       294 ------------~~f~~~-------------~~~~cvkf--~pd~~n~fl~G~sd~ki~~wDiRs~kv--vqeYd~hL--  342 (503)
T KOG0282|consen  294 ------------SRFHLD-------------KVPTCVKF--HPDNQNIFLVGGSDKKIRQWDIRSGKV--VQEYDRHL--  342 (503)
T ss_pred             ------------EEEecC-------------CCceeeec--CCCCCcEEEEecCCCcEEEEeccchHH--HHHHHhhh--
Confidence                        333221             57889999  7777 7899999999999999999983  33344444  


Q ss_pred             ccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe
Q 014005          162 SSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR  240 (432)
Q Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~  240 (432)
                               +.|..+.|-+.+...++.+.  ++.++||+.+.   ...++.....+...+.++..+|++.+++.- .|+.
T Consensus       343 ---------g~i~~i~F~~~g~rFissSD--dks~riWe~~~---~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~  408 (503)
T KOG0282|consen  343 ---------GAILDITFVDEGRRFISSSD--DKSVRIWENRI---PVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY  408 (503)
T ss_pred             ---------hheeeeEEccCCceEeeecc--CccEEEEEcCC---CccchhhcchhhccCcceecCCCCCeehhhccCce
Confidence                     78999999999999999988  99999999984   344333323344467789999999999987 8999


Q ss_pred             EEEEeCCCCCceeeEeecCCCCcCCCC--cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccC
Q 014005          241 INLWNLEISDQCFNIVDMKPSNMDDLT--EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG  318 (432)
Q Consensus       241 i~lwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~  318 (432)
                      |.++.+. ..-.+.    +...+.+|.  +.-..+.||||| .+|++|+.||.+.+||.++-++    +..++.|     
T Consensus       409 i~ifs~~-~~~r~n----kkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~kl----~~~lkah-----  473 (503)
T KOG0282|consen  409 IAIFSTV-PPFRLN----KKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTKL----VSKLKAH-----  473 (503)
T ss_pred             EEEEecc-cccccC----HhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhhh----hhccccC-----
Confidence            9999876 221111    112346774  456788999999 9999999999999999999887    6888887     


Q ss_pred             CccceeeeecceeEEEEcCCC-CEEEEee-CCeEEEEe
Q 014005          319 SKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKVFR  354 (432)
Q Consensus       319 ~~~~~~~~~~~v~~~~~s~dg-~~l~s~~-~~~i~iwd  354 (432)
                              ...+..+.|+|.. .-+|+|+ +|.|++||
T Consensus       474 --------~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  474 --------DQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             --------CcceEEEEecCCCcceeEecccCceeEecC
Confidence                    7899999999963 4566654 49999997

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=3.8e-25  Score=181.42  Aligned_cols=259  Identities=17%  Similarity=0.184  Sum_probs=193.1

Q ss_pred             CCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           32 VDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        32 ~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      .+.|.+|+||| ...++++||.|++||+|+++.....                        .. +....|+         
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~------------------------~~-ka~~~~~---------   72 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL------------------------VP-KAQQSHD---------   72 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcc------------------------cc-hhhhccC---------
Confidence            67899999999 4556678999999999999874211                        00 3345566         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc--ceecc
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA--HGYHL  188 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~  188 (432)
                         ++|.+++|  +.||..+++|+.|+.+++||+.+++...+..+.              ++|..+.|-+...  .+++|
T Consensus        73 ---~PvL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd--------------~pvkt~~wv~~~~~~cl~TG  133 (347)
T KOG0647|consen   73 ---GPVLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHD--------------APVKTCHWVPGMNYQCLVTG  133 (347)
T ss_pred             ---CCeEEEEE--ccCCceEEeeccCCceEEEEccCCCeeeeeecc--------------cceeEEEEecCCCcceeEec
Confidence               99999999  899999999999999999999999877665554              7889998876655  88999


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      +.  |.++++||.+   ...++.++  ...++++++..-  ...++++ .++.|.+|+++......+..      .....
T Consensus       134 SW--DKTlKfWD~R---~~~pv~t~--~LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~------~SpLk  198 (347)
T KOG0647|consen  134 SW--DKTLKFWDTR---SSNPVATL--QLPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRI------ESPLK  198 (347)
T ss_pred             cc--ccceeecccC---CCCeeeee--eccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhh------cCccc
Confidence            99  9999999999   66676665  456677777653  4577888 99999999998333222221      12234


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-ee
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD  346 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~  346 (432)
                      -.+++++..++. ...|.|+-.|++.|..+..+...  .-..|+.|.......    +..-.|++++|+|.-..|++ |+
T Consensus       199 ~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~--~nFtFkCHR~~~~~~----~~VYaVNsi~FhP~hgtlvTaGs  271 (347)
T KOG0647|consen  199 WQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPK--DNFTFKCHRSTNSVN----DDVYAVNSIAFHPVHGTLVTAGS  271 (347)
T ss_pred             ceeeEEEEEecC-CceEeeeecceEEEEecCCCCcc--CceeEEEeccCCCCC----CceEEecceEeecccceEEEecC
Confidence            468999999998 77799999999999999876331  146777773211110    01347899999998666766 78


Q ss_pred             CCeEEEEec---CcceeEeecc
Q 014005          347 YMNLKVFRY---EPVMTLSFCG  365 (432)
Q Consensus       347 ~~~i~iwd~---~~~~~~~~~~  365 (432)
                      ||+..+||-   ..+++.+.+.
T Consensus       272 DGtf~FWDkdar~kLk~s~~~~  293 (347)
T KOG0647|consen  272 DGTFSFWDKDARTKLKTSETHP  293 (347)
T ss_pred             CceEEEecchhhhhhhccCcCC
Confidence            899999999   4445544443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.3e-24  Score=169.89  Aligned_cols=250  Identities=10%  Similarity=0.155  Sum_probs=189.0

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .|.+.|+|.+|+|+|++||+|++|.+|++.-.+.....         +.+             .-.+|.-|.        
T Consensus        87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~---------~~g-------------~dle~nmhd--------  136 (350)
T KOG0641|consen   87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCN---------ATG-------------HDLEFNMHD--------  136 (350)
T ss_pred             ccCccEEEEEecCccCeEEecCCCceEEEEeccccccc---------ccC-------------cceeeeecC--------
Confidence            47889999999999999999999999999877654321         000             012344455        


Q ss_pred             hhhhcceeEEEEEEcC--CCCEEEEEe-CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          110 LEIEEKINRVRWCAAP--NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~--~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                          +.|..++|+..|  .+..|++++ .|-.|++=|...++  .+..+.+|.           +-|.. .++.++.+++
T Consensus       137 ----gtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~--~~~a~sght-----------ghila-lyswn~~m~~  198 (350)
T KOG0641|consen  137 ----GTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ--GFHALSGHT-----------GHILA-LYSWNGAMFA  198 (350)
T ss_pred             ----CceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC--cceeecCCc-----------ccEEE-EEEecCcEEE
Confidence                899999996433  355677764 46677777777766  444444444           44433 3567788899


Q ss_pred             cceeeccceEEEEeecccccceeeEEeec-CC-----CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecC
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYPH-AH-----DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK  259 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~-~~-----~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~  259 (432)
                      +|+.  |.+|++||++   ...|+.++.. -|     .+.|.++++.|.|+.|++| .|..+.+||++ .++.++.+   
T Consensus       199 sgsq--dktirfwdlr---v~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir-g~r~iq~f---  269 (350)
T KOG0641|consen  199 SGSQ--DKTIRFWDLR---VNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR-GGRMIQRF---  269 (350)
T ss_pred             ccCC--CceEEEEeee---ccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee-CCceeeee---
Confidence            9998  9999999999   6677776621 12     2578999999999999999 99999999999 78888866   


Q ss_pred             CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccc-cceeecccccccCCccceeeeecceeEEEEcCC
Q 014005          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-SARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (432)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d  338 (432)
                          ..|+..|+++.|+|.. .++++++.|..|++-|++. .+..+ .+.....|             ...+..+.|+|.
T Consensus       270 ----~phsadir~vrfsp~a-~yllt~syd~~ikltdlqg-dla~el~~~vv~eh-------------kdk~i~~rwh~~  330 (350)
T KOG0641|consen  270 ----HPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQG-DLAHELPIMVVAEH-------------KDKAIQCRWHPQ  330 (350)
T ss_pred             ----CCCccceeEEEeCCCc-eEEEEecccceEEEeeccc-chhhcCceEEEEec-------------cCceEEEEecCc
Confidence                8999999999999998 9999999999999999873 32111 13444454             788889999998


Q ss_pred             CCEEEE-eeCCeEEEEec
Q 014005          339 GQHLLS-RDYMNLKVFRY  355 (432)
Q Consensus       339 g~~l~s-~~~~~i~iwd~  355 (432)
                      .--+++ +.|.++.+|-+
T Consensus       331 d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  331 DFSFISSSADKTATLWAL  348 (350)
T ss_pred             cceeeeccCcceEEEecc
Confidence            765655 45699999965

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=3.9e-26  Score=194.66  Aligned_cols=261  Identities=15%  Similarity=0.206  Sum_probs=194.6

Q ss_pred             hccccchhhhhhhhcCC--CCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc
Q 014005            7 EASASLEWKCSQAFGER--NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT   84 (432)
Q Consensus         7 ~~~~~~~w~~~~~~~~~--~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   84 (432)
                      .+.....|+..   +++  .....-+..+.|++++|.++++++++++.|+.+++|+++..+..                 
T Consensus       195 ~Dr~Ik~W~v~---~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~-----------------  254 (459)
T KOG0288|consen  195 SDRIIKLWNVL---GEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR-----------------  254 (459)
T ss_pred             hhhhhhhhhcc---cchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhh-----------------
Confidence            33445556544   222  12233345678999999999999999999999999999887643                 


Q ss_pred             ccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccc
Q 014005           85 STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE  164 (432)
Q Consensus        85 ~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  164 (432)
                                .++.||+            +.|+++.|  ......+++|+.|.+|++||+....+.+..-.         
T Consensus       255 ----------~TLsGHt------------dkVt~ak~--~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~---------  301 (459)
T KOG0288|consen  255 ----------HTLSGHT------------DKVTAAKF--KLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP---------  301 (459)
T ss_pred             ----------hhhcccc------------cceeeehh--hccccceeeccccchhhhhhhhhhheeccccc---------
Confidence                      7899999            99999999  55555599999999999999987654332111         


Q ss_pred             cccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEE
Q 014005          165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL  243 (432)
Q Consensus       165 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~l  243 (432)
                           .+.+.++..+  ...+.+|.+  |+.|++||.+   ...+.... .. .+.|+++..++++..+++. .|.++.+
T Consensus       302 -----~S~cnDI~~~--~~~~~SgH~--DkkvRfwD~R---s~~~~~sv-~~-gg~vtSl~ls~~g~~lLsssRDdtl~v  367 (459)
T KOG0288|consen  302 -----GSQCNDIVCS--ISDVISGHF--DKKVRFWDIR---SADKTRSV-PL-GGRVTSLDLSMDGLELLSSSRDDTLKV  367 (459)
T ss_pred             -----cccccceEec--ceeeeeccc--ccceEEEecc---CCceeeEe-ec-CcceeeEeeccCCeEEeeecCCCceee
Confidence                 1233333333  445566666  9999999998   67777776 33 4499999999999999988 9999999


Q ss_pred             EeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005          244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (432)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~  323 (432)
                      .|++ +......+.  ...+. -....+.+.|||++ .++|+|+.||.|+||++.+++.    .+.+... .        
T Consensus       368 iDlR-t~eI~~~~s--A~g~k-~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKl----E~~l~~s-~--------  429 (459)
T KOG0288|consen  368 IDLR-TKEIRQTFS--AEGFK-CASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKL----EKVLSLS-T--------  429 (459)
T ss_pred             eecc-cccEEEEee--ccccc-cccccceeEECCCC-ceeeeccCCCcEEEEEccCceE----EEEeccC-C--------
Confidence            9999 555555441  11111 12348899999999 9999999999999999999886    4555441 0        


Q ss_pred             eeeecceeEEEEcCCCCEEEEeeC-CeEEEEe
Q 014005          324 TEIIASISDIKFANDGQHLLSRDY-MNLKVFR  354 (432)
Q Consensus       324 ~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd  354 (432)
                        -...|+++.|+|.|.+|++++. +.+.+|.
T Consensus       430 --s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  430 --SNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             --CCcceEEEEEcCCCchhhcccCCcceEecC
Confidence              0237999999999999999866 8899883

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.1e-24  Score=179.27  Aligned_cols=281  Identities=14%  Similarity=0.211  Sum_probs=198.1

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      -.|.+-|+|+.|++-|+.+|+|+.|++++|||.+....                       ++.+....+.|.       
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-----------------------~W~~Ts~Wrah~-------   59 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-----------------------TWSCTSSWRAHD-------   59 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-----------------------ceEEeeeEEecC-------
Confidence            36789999999999999999999999999999755432                       466777889999       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccC-------cceeeeeecCCCCccccccccccccccccccCCCC
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-------QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  181 (432)
                           +.|..+.|.+..-|+.+|+++.|+++.||.=..       .+..+...+....           +.|.++.|.|.
T Consensus        60 -----~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsr-----------ssV~DV~FaP~  123 (361)
T KOG2445|consen   60 -----GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSR-----------SSVTDVKFAPK  123 (361)
T ss_pred             -----CcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCC-----------cceeEEEecch
Confidence                 999999998655699999999999999997521       1233444444444           78999999987


Q ss_pred             Cc--ceecceeeccceEEEEeeccccc---ceeeEEe------ecCCCCCeeEEEeCCC---CCEEEEEcCC------eE
Q 014005          182 FA--HGYHLEWTENMATKIANVGNSVH---ARCQKVY------PHAHDFNINSISNNSD---CETFVSADDL------RI  241 (432)
Q Consensus       182 ~~--~~~~~~~~~~~~v~i~d~~~~~~---~~~~~~~------~~~~~~~i~~~~~~~~---~~~l~~~~d~------~i  241 (432)
                      ..  .+++.+.  ||.++||+.-....   ......+      +..+.....|+.|+|.   .+++|+|.|.      .+
T Consensus       124 hlGLklA~~~a--DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~  201 (361)
T KOG2445|consen  124 HLGLKLAAASA--DGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKV  201 (361)
T ss_pred             hcceEEEEecc--CcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccce
Confidence            54  4455554  99999998653211   1111111      1235667889999974   5678888443      88


Q ss_pred             EEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCC---cEEEEEeCCCeEEEEEccccccccccceeeccccc---
Q 014005          242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC---NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE---  315 (432)
Q Consensus       242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~---  315 (432)
                      .||.....+.....    ..++.+|..+|+.++|.|+-.   .+||+++.|| |+||.++....... ...... +.   
T Consensus       202 ~Iye~~e~~rKw~k----va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~-~ee~~~-~~~~~  274 (361)
T KOG2445|consen  202 KIYEYNENGRKWLK----VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIE-EEEVLA-PDLMT  274 (361)
T ss_pred             EEEEecCCcceeee----ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhh-hhcccC-CCCcc
Confidence            89988744433322    135579999999999999642   6899999999 99999984221000 000000 00   


Q ss_pred             --ccCCccceeeeecceeEEEEcCCCCEEEE-eeCCeEEEEec------CcceeEeec
Q 014005          316 --SHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKVFRY------EPVMTLSFC  364 (432)
Q Consensus       316 --~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~~~i~iwd~------~~~~~~~~~  364 (432)
                        .....+.+.+|.+.|+.+.|+-.|..|++ |+||+||+|..      ++...++..
T Consensus       275 ~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e  332 (361)
T KOG2445|consen  275 DLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAE  332 (361)
T ss_pred             ccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEecc
Confidence              00011334556899999999999999998 56699999988      455555443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.3e-26  Score=204.85  Aligned_cols=328  Identities=14%  Similarity=0.162  Sum_probs=242.0

Q ss_pred             chhhccccchhhhhhhhc---CCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcc
Q 014005            4 NREEASASLEWKCSQAFG---ERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQ   80 (432)
Q Consensus         4 ~~~~~~~~~~w~~~~~~~---~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   80 (432)
                      .++-+..-..|++.|..+   +........|++.|+.+....+|+.|+++|.|-+|++|+...+..              
T Consensus        42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~--------------  107 (735)
T KOG0308|consen   42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT--------------  107 (735)
T ss_pred             ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc--------------
Confidence            445556678899998766   344667788999999999999999999999999999999877531              


Q ss_pred             ccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCc
Q 014005           81 MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF  160 (432)
Q Consensus        81 ~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  160 (432)
                                 -+..++..|.            +.|.|+++. .++..++++|+.|+.|.+||++++....+..++.-+ 
T Consensus       108 -----------~c~stir~H~------------DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t-  162 (735)
T KOG0308|consen  108 -----------FCMSTIRTHK------------DYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT-  162 (735)
T ss_pred             -----------hhHhhhhccc------------chheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccc-
Confidence                       2556788898            889999984 467889999999999999999987432222221111 


Q ss_pred             cccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC
Q 014005          161 VSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL  239 (432)
Q Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~  239 (432)
                      ++++. .-...++++++.++.+..++.|+.  .+.+++||.+   +.+.+..+ .+|+..|.++..++||..++++ .||
T Consensus       163 ~~sl~-sG~k~siYSLA~N~t~t~ivsGgt--ek~lr~wDpr---t~~kimkL-rGHTdNVr~ll~~dDGt~~ls~sSDg  235 (735)
T KOG0308|consen  163 VNSLG-SGPKDSIYSLAMNQTGTIIVSGGT--EKDLRLWDPR---TCKKIMKL-RGHTDNVRVLLVNDDGTRLLSASSDG  235 (735)
T ss_pred             cccCC-CCCccceeeeecCCcceEEEecCc--ccceEEeccc---cccceeee-eccccceEEEEEcCCCCeEeecCCCc
Confidence            11110 023478899999999999999998  9999999999   66667777 7999999999999999999999 999


Q ss_pred             eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCC
Q 014005          240 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS  319 (432)
Q Consensus       240 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~  319 (432)
                      +|++||+. ..+|+.++       ..|...|+++..+|+- ..+.+|+.||.|..=|+++...+   ...++.       
T Consensus       236 tIrlWdLg-qQrCl~T~-------~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~---tlick~-------  296 (735)
T KOG0308|consen  236 TIRLWDLG-QQRCLATY-------IVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKS---TLICKE-------  296 (735)
T ss_pred             eEEeeecc-ccceeeeE-------EeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhh---eEeecC-------
Confidence            99999999 67788876       8899999999999998 99999999999999999985432   344444       


Q ss_pred             ccceeeeecceeEEEEcCCCCE-EEEeeCCeEEEEecCcceeEeecceeeeehhhhhcccccccccceeeE---------
Q 014005          320 KSFFTEIIASISDIKFANDGQH-LLSRDYMNLKVFRYEPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVI---------  389 (432)
Q Consensus       320 ~~~~~~~~~~v~~~~~s~dg~~-l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  389 (432)
                             ..+|..+..+.+..- -++..++.|+-|..++...+...+.+....... ....|.........         
T Consensus       297 -------daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~-~~~~~~~~~tp~~vi~Gg~ai~k  368 (735)
T KOG0308|consen  297 -------DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDS-NNHSCDLTNTPDSVIPGGAAIKK  368 (735)
T ss_pred             -------CCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccC-CCccccccCCCceeccCchhhhh
Confidence                   457777776643222 333455888889885554444443311111111 12222221111100         


Q ss_pred             --------EEEeecccceeeeec
Q 014005          390 --------YIITTLYLINLSALS  404 (432)
Q Consensus       390 --------~~~~g~~~~~i~~~~  404 (432)
                              .|+|-...|++.+||
T Consensus       369 ~~mL~dkRhVlTkDa~gnv~lwD  391 (735)
T KOG0308|consen  369 HAMLNDKRHVLTKDAKGNVALWD  391 (735)
T ss_pred             hhhhcCcceEeeecCCCCEEEEE
Confidence                    688888899999999

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.9e-25  Score=200.50  Aligned_cols=271  Identities=18%  Similarity=0.221  Sum_probs=210.0

Q ss_pred             EEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhc
Q 014005           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (432)
Q Consensus        35 V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  114 (432)
                      ..-++|+ ..+.||+|. ...|.+|+..++...                           .....+.            .
T Consensus       180 ~nlldWs-s~n~laVal-g~~vylW~~~s~~v~---------------------------~l~~~~~------------~  218 (484)
T KOG0305|consen  180 LNLLDWS-SANVLAVAL-GQSVYLWSASSGSVT---------------------------ELCSFGE------------E  218 (484)
T ss_pred             hhHhhcc-cCCeEEEEe-cceEEEEecCCCceE---------------------------EeEecCC------------C
Confidence            3445677 344677664 458999998887632                           1222224            8


Q ss_pred             ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCC-CCccccccccccccccccccCCCCCcceecceeecc
Q 014005          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH-FPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      .|+++.|  +++|.+|++|..+|.|.|||....+  .+..+.. |.           ..|-+++|.  ...+.+|+.  +
T Consensus       219 ~vtSv~w--s~~G~~LavG~~~g~v~iwD~~~~k--~~~~~~~~h~-----------~rvg~laW~--~~~lssGsr--~  279 (484)
T KOG0305|consen  219 LVTSVKW--SPDGSHLAVGTSDGTVQIWDVKEQK--KTRTLRGSHA-----------SRVGSLAWN--SSVLSSGSR--D  279 (484)
T ss_pred             ceEEEEE--CCCCCEEEEeecCCeEEEEehhhcc--ccccccCCcC-----------ceeEEEecc--CceEEEecC--C
Confidence            8999999  8999999999999999999998765  3333443 44           778888888  667777888  9


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (432)
                      +.+.++|++....  ....+ .+|...|..+.|++++.++|+| .|+.+.|||.. .......+       ..|.+.|..
T Consensus       280 ~~I~~~dvR~~~~--~~~~~-~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~-~~~p~~~~-------~~H~aAVKA  348 (484)
T KOG0305|consen  280 GKILNHDVRISQH--VVSTL-QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL-SPEPKFTF-------TEHTAAVKA  348 (484)
T ss_pred             CcEEEEEEecchh--hhhhh-hcccceeeeeEECCCCCeeccCCCccceEeccCC-CccccEEE-------eccceeeeE
Confidence            9999999984321  11225 7899999999999999999999 99999999996 44444444       899999999


Q ss_pred             EEEcCCCCcEEEEEe--CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE--e-eC
Q 014005          273 AEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS--R-DY  347 (432)
Q Consensus       273 ~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s--~-~~  347 (432)
                      ++|+|-...+||+|+  .|+.|++||..++..    +.....              ...|..+.|++..+-|++  | ++
T Consensus       349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~----i~~vdt--------------gsQVcsL~Wsk~~kEi~sthG~s~  410 (484)
T KOG0305|consen  349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGAR----IDSVDT--------------GSQVCSLIWSKKYKELLSTHGYSE  410 (484)
T ss_pred             eeeCCCccCceEEcCCCcccEEEEEEcCCCcE----eccccc--------------CCceeeEEEcCCCCEEEEecCCCC
Confidence            999998878999976  899999999999886    455555              489999999999876666  4 33


Q ss_pred             CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          348 MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       348 ~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      +.|.||+.   +++..+..|..           ++..+..+.....|++|+.|.++++|+-
T Consensus       411 n~i~lw~~ps~~~~~~l~gH~~-----------RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  411 NQITLWKYPSMKLVAELLGHTS-----------RVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             CcEEEEeccccceeeeecCCcc-----------eeEEEEECCCCCEEEEecccCcEEeccc
Confidence            99999999   67777777764           3333333444557999999999999993

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.6e-25  Score=207.44  Aligned_cols=254  Identities=15%  Similarity=0.210  Sum_probs=181.4

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeee------------------------------cCCCCcccc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKE------------------------------MDHFPFVSS  163 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------------------------~~~~~~~~~  163 (432)
                      +.|+++.|  ++||+|||+|+.|+.|+||.+...+......                              .......++
T Consensus       268 gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s  345 (712)
T KOG0283|consen  268 GAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS  345 (712)
T ss_pred             CcEEEEEe--CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence            99999999  9999999999999999999987611000000                              000000000


Q ss_pred             -----------c-----cc-cccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEe
Q 014005          164 -----------E-----NT-LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN  226 (432)
Q Consensus       164 -----------~-----~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~  226 (432)
                                 +     .. .-..+.|.++.|+.+ .+|++.+.  |.+|++|++.   ...|++.|  .|.+.|+|++|
T Consensus       346 ~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSM--DKTVRLWh~~---~~~CL~~F--~HndfVTcVaF  417 (712)
T KOG0283|consen  346 PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSM--DKTVRLWHPG---RKECLKVF--SHNDFVTCVAF  417 (712)
T ss_pred             ccccCCCccccccccchhhhhccchhheecccccC-CeeEeccc--cccEEeecCC---CcceeeEE--ecCCeeEEEEe
Confidence                       0     00 002466777777665 45666666  9999999999   88999998  79999999999


Q ss_pred             CC-CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccc
Q 014005          227 NS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD  304 (432)
Q Consensus       227 ~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~  304 (432)
                      +| |.+++++| -|+.|+||++. ..+... +       ..-..-|++++|.|+| +..+.|+.+|.+++|+++..+.  
T Consensus       418 nPvDDryFiSGSLD~KvRiWsI~-d~~Vv~-W-------~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~--  485 (712)
T KOG0283|consen  418 NPVDDRYFISGSLDGKVRLWSIS-DKKVVD-W-------NDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKL--  485 (712)
T ss_pred             cccCCCcEeecccccceEEeecC-cCeeEe-e-------hhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeE--
Confidence            99 78899999 99999999998 444333 2       3444779999999999 9999999999999999986554  


Q ss_pred             ccceeecccccccCCccceeeeecceeEEEEcCCC--CEEEEeeCCeEEEEec---CcceeEeecceeeeehhhhhcccc
Q 014005          305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRF  379 (432)
Q Consensus       305 ~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg--~~l~s~~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~  379 (432)
                        ...+.-+  ....+ . .. ...|+++.|.|..  +.|+|..|..|||+|.   .++..|+....        ..+..
T Consensus       486 --~~~~~I~--~~~~K-k-~~-~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n--------~~SQ~  550 (712)
T KOG0283|consen  486 --VSDFHIR--LHNKK-K-KQ-GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN--------TSSQI  550 (712)
T ss_pred             --EEeeeEe--eccCc-c-cc-CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc--------CCcce
Confidence              2222211  00000 0 00 1379999999853  4889998999999999   67777776543        22233


Q ss_pred             cccccceeeEEEEeecccceeeeecc
Q 014005          380 MSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       380 ~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      ...+ .....+||+|+.|..|++|+.
T Consensus       551 ~Asf-s~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  551 SASF-SSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             eeeE-ccCCCEEEEeecCceEEEEeC
Confidence            3222 225568999999999999994

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=1.6e-24  Score=203.61  Aligned_cols=238  Identities=13%  Similarity=0.170  Sum_probs=173.4

Q ss_pred             ccccCCCcEEEEEEcCC-CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           27 EELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        27 ~~~~h~~~V~~~~fsp~-g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ....|.+.|++++|+|+ +++||+|+.|++|+|||+.++....      .             ........+.+|.    
T Consensus        69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~------~-------------~i~~p~~~L~gH~----  125 (568)
T PTZ00420         69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV------K-------------EIKDPQCILKGHK----  125 (568)
T ss_pred             EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc------c-------------ccccceEEeecCC----
Confidence            34578999999999997 7899999999999999997642100      0             0012334678898    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCE-EEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                              ..|.+++|  +|++.. +++++.|++|++||+.+++......   +.           ..|.+++|++++..
T Consensus       126 --------~~V~sVaf--~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~---~~-----------~~V~SlswspdG~l  181 (568)
T PTZ00420        126 --------KKISIIDW--NPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN---MP-----------KKLSSLKWNIKGNL  181 (568)
T ss_pred             --------CcEEEEEE--CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe---cC-----------CcEEEEEECCCCCE
Confidence                    99999999  888875 5788999999999999876332221   12           56899999999999


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEE-----EeCCCCCEEEEE-cC----CeEEEEeCCCCCceee
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSI-----SNNSDCETFVSA-DD----LRINLWNLEISDQCFN  254 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~l~~~-~d----~~i~lwd~~~~~~~~~  254 (432)
                      +++++.  |+.+++||++   ++.++..+ .+|.+.+.+.     .|++++.+++++ .|    ++|++||++....++.
T Consensus       182 Lat~s~--D~~IrIwD~R---sg~~i~tl-~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~  255 (568)
T PTZ00420        182 LSGTCV--GKHMHIIDPR---KQEIASSF-HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALV  255 (568)
T ss_pred             EEEEec--CCEEEEEECC---CCcEEEEE-ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceE
Confidence            998887  9999999999   66777777 7887765433     345888888875 44    4799999995555555


Q ss_pred             EeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEE
Q 014005          255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  334 (432)
Q Consensus       255 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~  334 (432)
                      .+     .+..+.+.+......+++ .++++|+.|+.|++|++..+..     ..+....           +..++.+++
T Consensus       256 ~~-----~ld~~~~~L~p~~D~~tg-~l~lsGkGD~tIr~~e~~~~~~-----~~l~~~~-----------s~~p~~g~~  313 (568)
T PTZ00420        256 TM-----SIDNASAPLIPHYDESTG-LIYLIGKGDGNCRYYQHSLGSI-----RKVNEYK-----------SCSPFRSFG  313 (568)
T ss_pred             EE-----EecCCccceEEeeeCCCC-CEEEEEECCCeEEEEEccCCcE-----Eeecccc-----------cCCCccceE
Confidence            44     123344444444445556 8999999999999999987643     2232210           146788899


Q ss_pred             EcCCC
Q 014005          335 FANDG  339 (432)
Q Consensus       335 ~s~dg  339 (432)
                      |.|+.
T Consensus       314 f~Pkr  318 (568)
T PTZ00420        314 FLPKQ  318 (568)
T ss_pred             Ecccc
Confidence            99974

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=5.4e-25  Score=190.27  Aligned_cols=266  Identities=11%  Similarity=0.129  Sum_probs=206.0

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCC-ccccchhhhccccccccccCCcceeeee-ecCCccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPN-QHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDY  106 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~  106 (432)
                      ..|.-+|.|++++|++++.++++.+++|.=|++.+++.... .+.. ..+..+..          ....- ++|.     
T Consensus       139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev~k~~~~----------~~k~~r~~h~-----  202 (479)
T KOG0299|consen  139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-EVLKSHGN----------PLKESRKGHV-----  202 (479)
T ss_pred             ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-hhhhhccC----------CCCccccccc-----
Confidence            36788999999999999999999999999999998874311 0100 00111111          11111 3677     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                             +.+.+++.  ++||++|++|+.|..|.||+..+.+  .+..+..|.           +.|.+++|-.....++
T Consensus       203 -------keil~~av--S~Dgkylatgg~d~~v~Iw~~~t~e--hv~~~~ghr-----------~~V~~L~fr~gt~~ly  260 (479)
T KOG0299|consen  203 -------KEILTLAV--SSDGKYLATGGRDRHVQIWDCDTLE--HVKVFKGHR-----------GAVSSLAFRKGTSELY  260 (479)
T ss_pred             -------ceeEEEEE--cCCCcEEEecCCCceEEEecCcccc--hhhcccccc-----------cceeeeeeecCcccee
Confidence                   88999999  9999999999999999999999877  333455666           8899999999999999


Q ss_pred             cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      +++.  |..+++|+++   ....+.++ -+|.+.|.++....-++.+.+| .|+++++|++.  .....++       .+
T Consensus       261 s~s~--Drsvkvw~~~---~~s~vetl-yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~--eesqlif-------rg  325 (479)
T KOG0299|consen  261 SASA--DRSVKVWSID---QLSYVETL-YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP--EESQLIF-------RG  325 (479)
T ss_pred             eeec--CCceEEEehh---HhHHHHHH-hCCccceeeechhcccceEEeccccceeEEEecc--ccceeee-------eC
Confidence            9998  9999999998   55666666 7999999999999889888888 99999999997  3333444       78


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee-cccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      +.+.+-+++|=.+  ..|++|+.+|.|.+|++.+.++.    .+. ..|...+....  ..+..+|++++..|...++|+
T Consensus       326 ~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkpl----f~~~~AHgv~~~~~~--~~~~~Witsla~i~~sdL~as  397 (479)
T KOG0299|consen  326 GEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPL----FTSRLAHGVIPELDP--VNGNFWITSLAVIPGSDLLAS  397 (479)
T ss_pred             CCCCeeeEEEecc--cceeeccCCceEEEeeecccCce----eEeeccccccCCccc--cccccceeeeEecccCceEEe
Confidence            8889999999866  57999999999999999976652    322 23432222110  011259999999999999999


Q ss_pred             eeC-CeEEEEec
Q 014005          345 RDY-MNLKVFRY  355 (432)
Q Consensus       345 ~~~-~~i~iwd~  355 (432)
                      |+- |+|++|.+
T Consensus       398 GS~~G~vrLW~i  409 (479)
T KOG0299|consen  398 GSWSGCVRLWKI  409 (479)
T ss_pred             cCCCCceEEEEe
Confidence            865 99999999

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=3.5e-25  Score=207.44  Aligned_cols=248  Identities=17%  Similarity=0.288  Sum_probs=204.9

Q ss_pred             chhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCc
Q 014005           12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY   91 (432)
Q Consensus        12 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   91 (432)
                      ..|+..+.+.  -.....+|.+.|++++|..-+.+|++|+.|.++++||..+++                          
T Consensus       231 ~~~~~~~~~~--i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~--------------------------  282 (537)
T KOG0274|consen  231 HLWDLNNGYL--ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE--------------------------  282 (537)
T ss_pred             EEeecccceE--EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc--------------------------
Confidence            3555554322  122356899999999998878899999999999999988876                          


Q ss_pred             ceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccc
Q 014005           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  171 (432)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (432)
                       +...+.+|+            ..|.++..    ...++++|+.|.+|++|++.++....+..-  |.           +
T Consensus       283 -C~~~l~gh~------------stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~--h~-----------~  332 (537)
T KOG0274|consen  283 -CTHSLQGHT------------SSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRG--HT-----------G  332 (537)
T ss_pred             -EEEEecCCC------------ceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEecc--cc-----------c
Confidence             668999999            99999987    355788889999999999998885555442  44           7


Q ss_pred             ccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC
Q 014005          172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD  250 (432)
Q Consensus       172 ~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~  250 (432)
                      .|.++..+  +..+++|+.  |+.|++||+.   ..+|++.+ .+|...|.++.+.+. ..+++| .|++|++||++ ..
T Consensus       333 ~V~~v~~~--~~~lvsgs~--d~~v~VW~~~---~~~cl~sl-~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~-~~  402 (537)
T KOG0274|consen  333 PVNCVQLD--EPLLVSGSY--DGTVKVWDPR---TGKCLKSL-SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLR-TK  402 (537)
T ss_pred             cEEEEEec--CCEEEEEec--CceEEEEEhh---hceeeeee-cCCcceEEEEEecCc-ceEEeeeeccceEeecCC-ch
Confidence            89999888  889999999  9999999999   89999999 899999999988776 788888 89999999999 55


Q ss_pred             -ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc-cccccCCccceeeeec
Q 014005          251 -QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD-AAESHGSKSFFTEIIA  328 (432)
Q Consensus       251 -~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~  328 (432)
                       +++.++       .+|.+-+..+.+.  + ++|++++.|++|++||..+++.    ++.+++ |             ..
T Consensus       403 ~~c~~tl-------~~h~~~v~~l~~~--~-~~Lvs~~aD~~Ik~WD~~~~~~----~~~~~~~~-------------~~  455 (537)
T KOG0274|consen  403 RKCIHTL-------QGHTSLVSSLLLR--D-NFLVSSSADGTIKLWDAEEGEC----LRTLEGRH-------------VG  455 (537)
T ss_pred             hhhhhhh-------cCCcccccccccc--c-ceeEeccccccEEEeecccCce----eeeeccCC-------------cc
Confidence             777765       8898888766664  4 7899999999999999998886    677777 3             57


Q ss_pred             ceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          329 SISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       329 ~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                      .|..+++. +...|+++.++.+++||+
T Consensus       456 ~v~~l~~~-~~~il~s~~~~~~~l~dl  481 (537)
T KOG0274|consen  456 GVSALALG-KEEILCSSDDGSVKLWDL  481 (537)
T ss_pred             cEEEeecC-cceEEEEecCCeeEEEec
Confidence            88888877 444555567799999999

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=8e-25  Score=205.02  Aligned_cols=269  Identities=15%  Similarity=0.183  Sum_probs=212.8

Q ss_pred             CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      +...+.|..|.  ..++++++.|++|++|+..++...                          ...+.||.         
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i--------------------------~~~l~GH~---------  249 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLI--------------------------LTRLVGHF---------  249 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEE--------------------------EeeccCCC---------
Confidence            46688999998  567999999999999999887532                          24499999         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                         +.|.++++  ..-+.++++|+.|.++++||..++++.....  .|.           +.+.++...+  ..++.|+.
T Consensus       250 ---g~V~~l~~--~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~--gh~-----------stv~~~~~~~--~~~~sgs~  309 (537)
T KOG0274|consen  250 ---GGVWGLAF--PSGGDKLVSGSTDKTERVWDCSTGECTHSLQ--GHT-----------SSVRCLTIDP--FLLVSGSR  309 (537)
T ss_pred             ---CCceeEEE--ecCCCEEEEEecCCcEEeEecCCCcEEEEec--CCC-----------ceEEEEEccC--ceEeeccC
Confidence               99999999  3457899999999999999999999665533  444           4555554433  34444667


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                        |.+|++|++.   .+++++++ .+|.+.|+++..+  +.++++| .|++|++||+. +.++++.+       .+|..+
T Consensus       310 --D~tVkVW~v~---n~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~cl~sl-------~gH~~~  373 (537)
T KOG0274|consen  310 --DNTVKVWDVT---NGACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGKCLKSL-------SGHTGR  373 (537)
T ss_pred             --CceEEEEecc---CcceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhh-hceeeeee-------cCCcce
Confidence              9999999999   88999998 6799999999997  7789999 99999999999 88999877       899999


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCC
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYM  348 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~  348 (432)
                      |.++.+.+.  ..+++|+.|+.|++||+++...|   +..+.+|             ..-+..+.+  .+++|+++ .|+
T Consensus       374 V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c---~~tl~~h-------------~~~v~~l~~--~~~~Lvs~~aD~  433 (537)
T KOG0274|consen  374 VYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKC---IHTLQGH-------------TSLVSSLLL--RDNFLVSSSADG  433 (537)
T ss_pred             EEEEEecCc--ceEEeeeeccceEeecCCchhhh---hhhhcCC-------------ccccccccc--ccceeEeccccc
Confidence            999988875  67999999999999999987333   7888887             566655544  47789987 459


Q ss_pred             eEEEEec---CcceeEeec-ceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          349 NLKVFRY---EPVMTLSFC-GIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       349 ~i~iwd~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      +|++||.   ++++++..+ ..           .+..+...  ...+++++.++++.+|+.
T Consensus       434 ~Ik~WD~~~~~~~~~~~~~~~~-----------~v~~l~~~--~~~il~s~~~~~~~l~dl  481 (537)
T KOG0274|consen  434 TIKLWDAEEGECLRTLEGRHVG-----------GVSALALG--KEEILCSSDDGSVKLWDL  481 (537)
T ss_pred             cEEEeecccCceeeeeccCCcc-----------cEEEeecC--cceEEEEecCCeeEEEec
Confidence            9999999   777777763 11           11111111  124788889999999993

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=2.2e-24  Score=176.44  Aligned_cols=228  Identities=15%  Similarity=0.254  Sum_probs=176.0

Q ss_pred             ccCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        29 ~~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      -.|.+.|+++.+.+ .|+|+++|+.||.|.+||+++....     +...+-.....+       .-...-.+|.      
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~-----e~s~li~k~~c~-------v~~~h~~~Hk------  101 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY-----EASGLIAKHKCI-------VAKQHENGHK------  101 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccch-----hhccceeheeee-------ccccCCccce------
Confidence            35889999999988 6899999999999999999875411     000011100000       0011234566      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC---cc
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF---AH  184 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~  184 (432)
                            ..|.++.|.|. |.-+|.+++.|.++++||..+-+......+.              +.|++-+++|-.   .+
T Consensus       102 ------y~iss~~WyP~-DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me--------------~~VYshamSp~a~sHcL  160 (397)
T KOG4283|consen  102 ------YAISSAIWYPI-DTGMFTSSSFDHTLKVWDTNTLQEAVDFKME--------------GKVYSHAMSPMAMSHCL  160 (397)
T ss_pred             ------eeeeeeEEeee-cCceeecccccceEEEeecccceeeEEeecC--------------ceeehhhcChhhhcceE
Confidence                  88999999985 4448999999999999999887754444433              678888888753   46


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEE-EE-cCCeEEEEeCCCCCceeeEeecCC--
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKP--  260 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~-~d~~i~lwd~~~~~~~~~~~~~~~--  260 (432)
                      ++.|..  +-.|++.|+.   .+.+.+++ .+|.+.|.++.|+|...+++ +| .||.|++||++....++..++...  
T Consensus       161 iA~gtr--~~~VrLCDi~---SGs~sH~L-sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k  234 (397)
T KOG4283|consen  161 IAAGTR--DVQVRLCDIA---SGSFSHTL-SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK  234 (397)
T ss_pred             EEEecC--CCcEEEEecc---CCcceeee-ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCc
Confidence            666776  8899999999   88999999 99999999999999888755 67 899999999997667887775422  


Q ss_pred             --C---CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          261 --S---NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       261 --~---~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                        .   .-..|.+.|++++|..++ .++++++.|.++++|++.+|+.
T Consensus       235 ~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  235 RPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             cCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCcc
Confidence              1   235788999999999999 9999999999999999998874

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=4.5e-25  Score=192.65  Aligned_cols=287  Identities=14%  Similarity=0.166  Sum_probs=218.1

Q ss_pred             CccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        26 ~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ...+.|..-|.++.+|...+++.||+. |.|+|||+......                        ..+..+..-+    
T Consensus       413 ~~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k------------------------~PvsqLdcl~----  463 (705)
T KOG0639|consen  413 INTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK------------------------SPVSQLDCLN----  463 (705)
T ss_pred             hhhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC------------------------CccccccccC----
Confidence            445788999999999999999999987 68999999764311                        1112222111    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (432)
                            -+..|.++..  .|||+.|++|+.-.++.|||+.......-.++....           -....++.+|+.+..
T Consensus       464 ------rdnyiRSckL--~pdgrtLivGGeastlsiWDLAapTprikaeltssa-----------paCyALa~spDakvc  524 (705)
T KOG0639|consen  464 ------RDNYIRSCKL--LPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSA-----------PACYALAISPDAKVC  524 (705)
T ss_pred             ------cccceeeeEe--cCCCceEEeccccceeeeeeccCCCcchhhhcCCcc-----------hhhhhhhcCCcccee
Confidence                  1166788888  799999999999999999999876543333333222           456778899999999


Q ss_pred             ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (432)
                      ..+..  ||.|.|||+.   ....++.| .+|.+.+.||.++++|..|.+| -|++|+.||++ .+..+..        .
T Consensus       525 Fsccs--dGnI~vwDLh---nq~~Vrqf-qGhtDGascIdis~dGtklWTGGlDntvRcWDlr-egrqlqq--------h  589 (705)
T KOG0639|consen  525 FSCCS--DGNIAVWDLH---NQTLVRQF-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR-EGRQLQQ--------H  589 (705)
T ss_pred             eeecc--CCcEEEEEcc---cceeeecc-cCCCCCceeEEecCCCceeecCCCccceeehhhh-hhhhhhh--------h
Confidence            99888  9999999999   77888889 8999999999999999999999 99999999999 4443321        3


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      ...+.|.++.++|++ .+|+.|-.++.+.+......+     ...+..|             ..-|.++.|++.|+++++
T Consensus       590 dF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~-----kyqlhlh-------------eScVLSlKFa~cGkwfvS  650 (705)
T KOG0639|consen  590 DFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPE-----KYQLHLH-------------ESCVLSLKFAYCGKWFVS  650 (705)
T ss_pred             hhhhhheecccCCCc-cceeeecccCcEEEEecCCcc-----ceeeccc-------------ccEEEEEEecccCceeee
Confidence            456789999999999 999999999999988876533     2555555             789999999999999998


Q ss_pred             -eeCCeEEEEec-CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          345 -RDYMNLKVFRY-EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       345 -~~~~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                       |-|+.+..|.. ---..|+..+.        ...-.|+...++  .+||||+-|..-.||.
T Consensus       651 tGkDnlLnawrtPyGasiFqskE~--------SsVlsCDIS~dd--kyIVTGSGdkkATVYe  702 (705)
T KOG0639|consen  651 TGKDNLLNAWRTPYGASIFQSKES--------SSVLSCDISFDD--KYIVTGSGDKKATVYE  702 (705)
T ss_pred             cCchhhhhhccCccccceeecccc--------CcceeeeeccCc--eEEEecCCCcceEEEE
Confidence             67799999998 21222332221        122334433333  3799999998877775

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=3e-25  Score=194.37  Aligned_cols=288  Identities=15%  Similarity=0.111  Sum_probs=201.4

Q ss_pred             cchhhccccchhhhhhhhcCCCCCcccc--CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcc
Q 014005            3 LNREEASASLEWKCSQAFGERNPDEELQ--DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQ   80 (432)
Q Consensus         3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~--h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   80 (432)
                      +++..++...-|+|...=......+.++  ....|.+++|++.|..|++.+.....+|+|.+..+.....++       .
T Consensus       183 ~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KG-------D  255 (641)
T KOG0772|consen  183 VSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKG-------D  255 (641)
T ss_pred             eeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeecc-------c
Confidence            4455667777888874433222233332  356899999999999888888788999999877654311011       0


Q ss_pred             ccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcc-eeeeeecCCC
Q 014005           81 MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHF  158 (432)
Q Consensus        81 ~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~  158 (432)
                      .+        ..-...-+||.            ..+++.+|  +|+ .+.|++++.||++++||+...+ ...+......
T Consensus       256 QY--------I~Dm~nTKGHi------------a~lt~g~w--hP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~  313 (641)
T KOG0772|consen  256 QY--------IRDMYNTKGHI------------AELTCGCW--HPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA  313 (641)
T ss_pred             hh--------hhhhhccCCce------------eeeecccc--ccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence            00        11123456788            89999999  554 4579999999999999997553 1111111100


Q ss_pred             CccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCC--CeeEEEeCCCCCEEEEE
Q 014005          159 PFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF--NINSISNNSDCETFVSA  236 (432)
Q Consensus       159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~  236 (432)
                      .        ...-.+..++|++++++++.|..  ||.|.+|+.... ...+...+..+|..  .|+|+.|+++|++|++-
T Consensus       314 ~--------g~Rv~~tsC~~nrdg~~iAagc~--DGSIQ~W~~~~~-~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR  382 (641)
T KOG0772|consen  314 G--------GKRVPVTSCAWNRDGKLIAAGCL--DGSIQIWDKGSR-TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR  382 (641)
T ss_pred             C--------CcccCceeeecCCCcchhhhccc--CCceeeeecCCc-ccccceEeeeccCCCCceeEEEeccccchhhhc
Confidence            0        01145778999999999999999  999999998644 33444444478877  99999999999999997


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe------CCCeEEEEEcccccccccccee
Q 014005          237 -DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS------SRGFVRLVDMRQSALCDHSARI  309 (432)
Q Consensus       237 -~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~  309 (432)
                       .|+++++||+++.++++....-     ......-+.++|||+. +++++|.      ..|.+.+||..+-..    +..
T Consensus       383 g~D~tLKvWDLrq~kkpL~~~tg-----L~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d~----v~k  452 (641)
T KOG0772|consen  383 GFDDTLKVWDLRQFKKPLNVRTG-----LPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLDT----VYK  452 (641)
T ss_pred             cCCCceeeeeccccccchhhhcC-----CCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccceee----EEE
Confidence             9999999999988887765411     1122345778999998 9999986      346899999887554    333


Q ss_pred             ecccccccCCccceeeeecceeEEEEcCCC-CEEEEeeCCeEEEE
Q 014005          310 LRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDYMNLKVF  353 (432)
Q Consensus       310 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~s~~~~~i~iw  353 (432)
                      +.-.             ...|..+.|+|.= +.++.+++|++++|
T Consensus       453 i~i~-------------~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  453 IDIS-------------TASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             ecCC-------------CceEEEEeecchhhheeeecCCCceEEE
Confidence            3331             4689999999984 45555577888776

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=9.5e-25  Score=188.77  Aligned_cols=238  Identities=17%  Similarity=0.255  Sum_probs=188.9

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .|...|.+++.+|||+|||+|+.|..|.||+.++.+.+                           ..+.+|.        
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv---------------------------~~~~ghr--------  244 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHV---------------------------KVFKGHR--------  244 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchh---------------------------hcccccc--------
Confidence            68889999999999999999999999999999998744                           6789999        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                          +.|.+++|  -.....+++++.|+.|++|+++...  .+..+-.|+           +.|..+.-..-...+..|.
T Consensus       245 ----~~V~~L~f--r~gt~~lys~s~Drsvkvw~~~~~s--~vetlyGHq-----------d~v~~IdaL~reR~vtVGg  305 (479)
T KOG0299|consen  245 ----GAVSSLAF--RKGTSELYSASADRSVKVWSIDQLS--YVETLYGHQ-----------DGVLGIDALSRERCVTVGG  305 (479)
T ss_pred             ----cceeeeee--ecCccceeeeecCCceEEEehhHhH--HHHHHhCCc-----------cceeeechhcccceEEecc
Confidence                99999999  6667789999999999999998654  333444455           7788888878888888888


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc-----
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM-----  263 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~-----  263 (432)
                      .  |.++++|++..    ....+| .++.+.+-|++|-.+. .+++| +||.|.+|++. ..+++-+........     
T Consensus       306 r--DrT~rlwKi~e----esqlif-rg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~-KKkplf~~~~AHgv~~~~~~  376 (479)
T KOG0299|consen  306 R--DRTVRLWKIPE----ESQLIF-RGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLL-KKKPLFTSRLAHGVIPELDP  376 (479)
T ss_pred             c--cceeEEEeccc----cceeee-eCCCCCeeeEEEeccc-ceeeccCCceEEEeeec-ccCceeEeeccccccCCccc
Confidence            8  99999999952    223334 7889999999998665 67888 99999999998 455555442211111     


Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  343 (432)
                      ..+..+|++++..|.. .++|+|+.+|.|++|-+..+-...+++..+.-              .+.|++++|+++|+.|+
T Consensus       377 ~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~--------------~GfVNsl~f~~sgk~iv  441 (479)
T KOG0299|consen  377 VNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAINLLYSLSL--------------VGFVNSLAFSNSGKRIV  441 (479)
T ss_pred             cccccceeeeEecccC-ceEEecCCCCceEEEEecCCccccceeeeccc--------------ccEEEEEEEccCCCEEE
Confidence            1223599999999998 99999999999999999987443222344433              57899999999999877


Q ss_pred             Ee
Q 014005          344 SR  345 (432)
Q Consensus       344 s~  345 (432)
                      +|
T Consensus       442 ag  443 (479)
T KOG0299|consen  442 AG  443 (479)
T ss_pred             Ee
Confidence            75

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=1.1e-24  Score=197.28  Aligned_cols=274  Identities=14%  Similarity=0.195  Sum_probs=217.2

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ...|.+-|..+++.+.. .++++++||++++|+-..++..                         ....+++|.      
T Consensus        10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l-------------------------~~~~~~~~~------   57 (745)
T KOG0301|consen   10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYL-------------------------ETHAFEGPK------   57 (745)
T ss_pred             eccCccchheeEecCCe-EEeecCCCCceeeeeccCcccc-------------------------cceecccCc------
Confidence            34788888888876544 7899999999999998766532                         234567777      


Q ss_pred             chhhhhcceeE-EEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          108 KSLEIEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       108 ~~~~~~~~v~~-l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                            +-|.. ++|.+ .++-.+++|+.|..|.+|...+..  .+..+..|.           +.|.+++...++. ++
T Consensus        58 ------g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~--P~~~LkgH~-----------snVC~ls~~~~~~-~i  116 (745)
T KOG0301|consen   58 ------GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAE--PLYTLKGHK-----------SNVCSLSIGEDGT-LI  116 (745)
T ss_pred             ------ceeeccceecc-ccCcceEeecccceEEEEecCCCC--chhhhhccc-----------cceeeeecCCcCc-eE
Confidence                  66666 88854 455679999999999999988766  555566666           7788888777777 89


Q ss_pred             cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      +|+.  |.++++|...     ++...+ .+|...|.++..-|++ .+++| .|.+|++|.-.   ..++++       .+
T Consensus       117 SgSW--D~TakvW~~~-----~l~~~l-~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~l~tf-------~g  177 (745)
T KOG0301|consen  117 SGSW--DSTAKVWRIG-----ELVYSL-QGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TLLKTF-------SG  177 (745)
T ss_pred             eccc--ccceEEecch-----hhhccc-CCcchheeeeeecCCC-cEEeccCcceeeeccCC---chhhhh-------cc
Confidence            9999  9999999876     444556 8999999999999988 78888 99999999764   566655       89


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-  344 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-  344 (432)
                      |...|+.+++-+++  .|++++.||.|++|++. |+.    +..+.+|             .+-|.+++...++..+++ 
T Consensus       178 HtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~-ge~----l~~~~gh-------------tn~vYsis~~~~~~~Ivs~  237 (745)
T KOG0301|consen  178 HTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLD-GEV----LLEMHGH-------------TNFVYSISMALSDGLIVST  237 (745)
T ss_pred             chhheeeeEEecCC--CeEeecCCceEEEEecc-Cce----eeeeecc-------------ceEEEEEEecCCCCeEEEe
Confidence            99999999999984  58899999999999994 554    6888887             889999997777777777 


Q ss_pred             eeCCeEEEEec-CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          345 RDYMNLKVFRY-EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       345 ~~~~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      |.|++++||+. .+.+.+..+....|-...+         .+.   -|++|+.||.|+||..
T Consensus       238 gEDrtlriW~~~e~~q~I~lPttsiWsa~~L---------~Ng---DIvvg~SDG~VrVfT~  287 (745)
T KOG0301|consen  238 GEDRTLRIWKKDECVQVITLPTTSIWSAKVL---------LNG---DIVVGGSDGRVRVFTV  287 (745)
T ss_pred             cCCceEEEeecCceEEEEecCccceEEEEEe---------eCC---CEEEeccCceEEEEEe
Confidence            46699999999 8888888877544443333         111   2889999999999984

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=3.1e-24  Score=204.03  Aligned_cols=302  Identities=14%  Similarity=0.187  Sum_probs=221.2

Q ss_pred             ccC-CCcEEEEEEcCCCCEEEEec--ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           29 LQD-VDIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        29 ~~h-~~~V~~~~fsp~g~~l~t~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      +.| ...|.+++.+|+|..+|||+  .|+.++||+.+.--.-         ....+..      -.+.+.+...|.    
T Consensus         9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~---------~~~~~~~------l~k~l~~m~~h~----   69 (942)
T KOG0973|consen    9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE---------KEEKNEN------LPKHLCTMDDHD----   69 (942)
T ss_pred             cccCCeeEEEEEecCCceeEecCCccccccceeeccccccch---------hhhhhcc------cchhheeecccc----
Confidence            444 45799999999999999999  8999999997542100         0000000      012334667788    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc----------------ceeeeeecCCCCcccccccccc
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ----------------KVKKIKEMDHFPFVSSENTLLA  169 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~----------------~~~~~~~~~~~~~~~~~~~~~~  169 (432)
                              +.|+|+.|  ++||++||+|+.|+.|.+|+....                ..+....+..|.          
T Consensus        70 --------~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~----------  129 (942)
T KOG0973|consen   70 --------GSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD----------  129 (942)
T ss_pred             --------CceeEEEE--CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC----------
Confidence                    99999999  999999999999999999998730                122333444555          


Q ss_pred             ccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCC
Q 014005          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI  248 (432)
Q Consensus       170 ~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~  248 (432)
                       +.|.++.|+|++.++++++.  |+.|.+|+..   +..+++++ .+|.+.|..+.|.|-|++||+- +|++|++|++. 
T Consensus       130 -~DV~Dv~Wsp~~~~lvS~s~--DnsViiwn~~---tF~~~~vl-~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~-  201 (942)
T KOG0973|consen  130 -SDVLDVNWSPDDSLLVSVSL--DNSVIIWNAK---TFELLKVL-RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS-  201 (942)
T ss_pred             -CccceeccCCCccEEEEecc--cceEEEEccc---cceeeeee-ecccccccceEECCccCeeeeecCCceEEEEEcc-
Confidence             89999999999999999999  9999999999   77888888 8999999999999999999998 99999999977 


Q ss_pred             CCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe----CCCeEEEEEccccccccccceeecccccccCCcccee
Q 014005          249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (432)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~  324 (432)
                      .-...+.+. +|-.-..-...+..+.|+||| ++|++..    .-..+.|.+-.+.+.    -..|-+|           
T Consensus       202 dw~i~k~It-~pf~~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk~----~~~LvGH-----------  264 (942)
T KOG0973|consen  202 DWGIEKSIT-KPFEESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWKV----DKDLVGH-----------  264 (942)
T ss_pred             cceeeEeec-cchhhCCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCcee----eeeeecC-----------
Confidence            333444331 111112223468899999999 9999864    233688888665553    4677787           


Q ss_pred             eeecceeEEEEcCC-----CC------------EEEEe-eCCeEEEEec-CcceeEeecceeeeehhhhhcccccccccc
Q 014005          325 EIIASISDIKFAND-----GQ------------HLLSR-DYMNLKVFRY-EPVMTLSFCGIYVWILRQLQHSRFMSIYAL  385 (432)
Q Consensus       325 ~~~~~v~~~~~s~d-----g~------------~l~s~-~~~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (432)
                        .+++..++|+|.     ..            .+|+| .|++|-||.. .+...+-.|.        +....+.++..+
T Consensus       265 --~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~--------lf~~SI~DmsWs  334 (942)
T KOG0973|consen  265 --SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN--------LFNKSIVDMSWS  334 (942)
T ss_pred             --CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh--------hhcCceeeeeEc
Confidence              789999999982     11            34556 4599999999 2222223332        234455555555


Q ss_pred             eeeEEEEeecccceeeeec
Q 014005          386 SCVIYIITTLYLINLSALS  404 (432)
Q Consensus       386 ~~~~~~~~g~~~~~i~~~~  404 (432)
                      ...+.+...|+||+|.+..
T Consensus       335 pdG~~LfacS~DGtV~~i~  353 (942)
T KOG0973|consen  335 PDGFSLFACSLDGTVALIH  353 (942)
T ss_pred             CCCCeEEEEecCCeEEEEE
Confidence            5566788889999999887

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=3.8e-24  Score=183.68  Aligned_cols=244  Identities=16%  Similarity=0.196  Sum_probs=196.9

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      +|...|+.+.|+|+...+++++.|-.|+||........                           .....|+        
T Consensus       259 Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~---------------------------~~~~~h~--------  303 (506)
T KOG0289|consen  259 GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP---------------------------TSSRPHE--------  303 (506)
T ss_pred             CcceEEEEEEeccchhheeecCCcceEEeeccccccCc---------------------------ccccccc--------
Confidence            67889999999999999999999999999998765422                           4566788        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                          .+|+.+..  +|.|.||++++.|++..+.|++++............           -.+.+.+|+||+..+.+|.
T Consensus       304 ----~~V~~ls~--h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~-----------v~~ts~~fHpDgLifgtgt  366 (506)
T KOG0289|consen  304 ----EPVTGLSL--HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD-----------VEYTSAAFHPDGLIFGTGT  366 (506)
T ss_pred             ----ccceeeee--ccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc-----------ceeEEeeEcCCceEEeccC
Confidence                99999999  899999999999999999999998744433322111           4578999999999999999


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      .  |+.++|||+.   .......| .+|.+.|..++|+.+|-+|+++ +|+.|++||++ ..+.++++.+     .. ..
T Consensus       367 ~--d~~vkiwdlk---s~~~~a~F-pght~~vk~i~FsENGY~Lat~add~~V~lwDLR-Kl~n~kt~~l-----~~-~~  433 (506)
T KOG0289|consen  367 P--DGVVKIWDLK---SQTNVAKF-PGHTGPVKAISFSENGYWLATAADDGSVKLWDLR-KLKNFKTIQL-----DE-KK  433 (506)
T ss_pred             C--CceEEEEEcC---CccccccC-CCCCCceeEEEeccCceEEEEEecCCeEEEEEeh-hhcccceeec-----cc-cc
Confidence            8  9999999999   56677778 7899999999999999999999 99999999999 5556665521     22 23


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  347 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-  347 (432)
                      .+.++.|++.| .+|+.++.|=+|++++-.+..  .+.+..+..|             .+..+.+.|..+.+++++++. 
T Consensus       434 ~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~--W~~~~~~~~~-------------sg~st~v~Fg~~aq~l~s~smd  497 (506)
T KOG0289|consen  434 EVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKS--WTEIKELADH-------------SGLSTGVRFGEHAQYLASTSMD  497 (506)
T ss_pred             cceeEEEcCCC-CeEEeecceeEEEEEeccccc--ceeeehhhhc-------------ccccceeeecccceEEeeccch
Confidence            69999999999 999999888666666643322  2224556665             678899999999999999755 


Q ss_pred             CeEEEEe
Q 014005          348 MNLKVFR  354 (432)
Q Consensus       348 ~~i~iwd  354 (432)
                      ..++++.
T Consensus       498 ~~l~~~a  504 (506)
T KOG0289|consen  498 AILRLYA  504 (506)
T ss_pred             hheEEee
Confidence            6667664

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.1e-23  Score=173.57  Aligned_cols=247  Identities=14%  Similarity=0.144  Sum_probs=190.3

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      .+.|+.+.|+|.++.|++++.||++++||.......                            ..-.|.          
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~----------------------------~~~~~~----------   54 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK----------------------------LKFKHG----------   54 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh----------------------------hheecC----------
Confidence            468999999999999999999999999999875422                            122355          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                        .++.+.+|  . +...+++|+.||.|+.+|+.++....+..+.              ..+.++.+.+....+++|++ 
T Consensus        55 --~plL~c~F--~-d~~~~~~G~~dg~vr~~Dln~~~~~~igth~--------------~~i~ci~~~~~~~~vIsgsW-  114 (323)
T KOG1036|consen   55 --APLLDCAF--A-DESTIVTGGLDGQVRRYDLNTGNEDQIGTHD--------------EGIRCIEYSYEVGCVISGSW-  114 (323)
T ss_pred             --Cceeeeec--c-CCceEEEeccCceEEEEEecCCcceeeccCC--------------CceEEEEeeccCCeEEEccc-
Confidence              89999999  4 3568999999999999999998866655543              78999999999999999999 


Q ss_pred             ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                       |+.|++||.+   ...+...+  .....|.++..+  ++.|++| .|..+.+||+++.....+.-      -....-.+
T Consensus       115 -D~~ik~wD~R---~~~~~~~~--d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~r------eS~lkyqt  180 (323)
T KOG1036|consen  115 -DKTIKFWDPR---NKVVVGTF--DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRR------ESSLKYQT  180 (323)
T ss_pred             -CccEEEEecc---cccccccc--ccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhc------cccceeEE
Confidence             9999999998   33343333  334478887764  5678888 99999999999655544221      12334568


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCe
Q 014005          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN  349 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~  349 (432)
                      +++++-|++ .=+++++-||+|.+=.+...+......-.|+.|......    .+..-+|++++|+|--..|||| +||.
T Consensus       181 R~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~----~~~~yPVNai~Fhp~~~tfaTgGsDG~  255 (323)
T KOG1036|consen  181 RCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKD----TEIIYPVNAIAFHPIHGTFATGGSDGI  255 (323)
T ss_pred             EEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCC----ceEEEEeceeEeccccceEEecCCCce
Confidence            999999977 678889999999887776653322234677777433322    2234699999999998889996 6799


Q ss_pred             EEEEec
Q 014005          350 LKVFRY  355 (432)
Q Consensus       350 i~iwd~  355 (432)
                      |.+||+
T Consensus       256 V~~Wd~  261 (323)
T KOG1036|consen  256 VNIWDL  261 (323)
T ss_pred             EEEccC
Confidence            999999

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=2.4e-25  Score=184.39  Aligned_cols=242  Identities=15%  Similarity=0.210  Sum_probs=204.9

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee-cCCccccccc
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLK  108 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h~~~~~~~~  108 (432)
                      -+.++|.|+.||.|..+||+|+.||.|++|.+.++.                           |++.|. +|+       
T Consensus       261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~---------------------------ClRrFdrAHt-------  306 (508)
T KOG0275|consen  261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ---------------------------CLRRFDRAHT-------  306 (508)
T ss_pred             ecccceEEEeecccHHHhhccCcCCcEEEEEEecch---------------------------HHHHhhhhhc-------
Confidence            357899999999999999999999999999999986                           335565 788       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           ..|+++.|  +.|+..+++++.|.++++.-+++|+  .+.++.+|.           +.|....|.+++..++++
T Consensus       307 -----kGvt~l~F--SrD~SqiLS~sfD~tvRiHGlKSGK--~LKEfrGHs-----------Syvn~a~ft~dG~~iisa  366 (508)
T KOG0275|consen  307 -----KGVTCLSF--SRDNSQILSASFDQTVRIHGLKSGK--CLKEFRGHS-----------SYVNEATFTDDGHHIISA  366 (508)
T ss_pred             -----cCeeEEEE--ccCcchhhcccccceEEEeccccch--hHHHhcCcc-----------ccccceEEcCCCCeEEEe
Confidence                 99999999  8999999999999999999999998  455666666           889999999999999999


Q ss_pred             eeeccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      +.  ||+|++|+..   +..|+.+|+ .+.+..|+++-.-|. ...++++ ..+++++-++.  ++.++.+.-    -..
T Consensus       367 Ss--DgtvkvW~~K---tteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q--GQvVrsfsS----GkR  435 (508)
T KOG0275|consen  367 SS--DGTVKVWHGK---TTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ--GQVVRSFSS----GKR  435 (508)
T ss_pred             cC--CccEEEecCc---chhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc--ceEEeeecc----CCc
Confidence            99  9999999999   788888883 245567888877774 4567777 89999999998  788877611    122


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-  344 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-  344 (432)
                      ..+..-+.+.+|.| .++.+.+.|+.++.|...+|++    .+++.-|             ...+..++-+|...+||+ 
T Consensus       436 EgGdFi~~~lSpkG-ewiYcigED~vlYCF~~~sG~L----E~tl~Vh-------------EkdvIGl~HHPHqNllAsY  497 (508)
T KOG0275|consen  436 EGGDFINAILSPKG-EWIYCIGEDGVLYCFSVLSGKL----ERTLPVH-------------EKDVIGLTHHPHQNLLASY  497 (508)
T ss_pred             cCCceEEEEecCCC-cEEEEEccCcEEEEEEeecCce----eeeeecc-------------cccccccccCcccchhhhh
Confidence            23456778899999 9999999999999999999987    5778776             778889999999999999 


Q ss_pred             eeCCeEEEEe
Q 014005          345 RDYMNLKVFR  354 (432)
Q Consensus       345 ~~~~~i~iwd  354 (432)
                      +.||.+++|.
T Consensus       498 sEDgllKLWk  507 (508)
T KOG0275|consen  498 SEDGLLKLWK  507 (508)
T ss_pred             cccchhhhcC
Confidence            5669999995

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.9e-23  Score=171.11  Aligned_cols=241  Identities=16%  Similarity=0.189  Sum_probs=180.7

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      ..|+++.|  +++|.++++++.|..+++||...++..+....  +.           -.+..+.|......+..++...|
T Consensus        15 ~~i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~ti~s--kk-----------yG~~~~~Fth~~~~~i~sStk~d   79 (311)
T KOG1446|consen   15 GKINSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKTINS--KK-----------YGVDLACFTHHSNTVIHSSTKED   79 (311)
T ss_pred             CceeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeEeec--cc-----------ccccEEEEecCCceEEEccCCCC
Confidence            78999999  89999999999999999999998874443332  22           45666777666666666655558


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (432)
                      .+|+..++.   +.+.++.| .+|...|++++.+|-+..++++ .|++|++||++ ...+.-.+       ..  ..-..
T Consensus        80 ~tIryLsl~---dNkylRYF-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR-~~~cqg~l-------~~--~~~pi  145 (311)
T KOG1446|consen   80 DTIRYLSLH---DNKYLRYF-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR-VKKCQGLL-------NL--SGRPI  145 (311)
T ss_pred             CceEEEEee---cCceEEEc-CCCCceEEEEEecCCCCeEEecccCCeEEeeEec-CCCCceEE-------ec--CCCcc
Confidence            899999999   88999999 9999999999999999999999 99999999999 55555443       11  12235


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEE
Q 014005          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK  351 (432)
Q Consensus       273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~  351 (432)
                      ++|+|.| -++|++...+.|++||+|+-..-.  ..+|.- ..         +.....+.+.|||||++|+.++. +.++
T Consensus       146 ~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgP--F~tf~i-~~---------~~~~ew~~l~FS~dGK~iLlsT~~s~~~  212 (311)
T KOG1446|consen  146 AAFDPEG-LIFALANGSELIKLYDLRSFDKGP--FTTFSI-TD---------NDEAEWTDLEFSPDGKSILLSTNASFIY  212 (311)
T ss_pred             eeECCCC-cEEEEecCCCeEEEEEecccCCCC--ceeEcc-CC---------CCccceeeeEEcCCCCEEEEEeCCCcEE
Confidence            7999999 999999888899999999753211  233322 00         11467899999999999998866 9999


Q ss_pred             EEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          352 VFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       352 iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      +.|-   ..+.++..+...       ...++. ..+.....++++|+.||+|++|+
T Consensus       213 ~lDAf~G~~~~tfs~~~~~-------~~~~~~-a~ftPds~Fvl~gs~dg~i~vw~  260 (311)
T KOG1446|consen  213 LLDAFDGTVKSTFSGYPNA-------GNLPLS-ATFTPDSKFVLSGSDDGTIHVWN  260 (311)
T ss_pred             EEEccCCcEeeeEeeccCC-------CCccee-EEECCCCcEEEEecCCCcEEEEE
Confidence            9999   566666665430       011111 12222334699999999999999

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.1e-24  Score=176.41  Aligned_cols=239  Identities=15%  Similarity=0.204  Sum_probs=186.2

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ...|.++|++++.+  |.++|+|+.|-+|+|||+...+.+                           ..+..|.      
T Consensus        39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql---------------------------g~ll~Ha------   83 (362)
T KOG0294|consen   39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL---------------------------GILLSHA------   83 (362)
T ss_pred             ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh---------------------------cceeccc------
Confidence            34688899999976  999999999999999999887654                           6778888      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                            +.|+++.|.+......|++|+.||.|.+|+...-.  .+..+..|.           +.|+.++.+|.++...+
T Consensus        84 ------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~--~~~slK~H~-----------~~Vt~lsiHPS~KLALs  144 (362)
T KOG0294|consen   84 ------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE--LLKSLKAHK-----------GQVTDLSIHPSGKLALS  144 (362)
T ss_pred             ------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeE--Eeeeecccc-----------cccceeEecCCCceEEE
Confidence                  99999999532223489999999999999987654  555566666           78999999999999999


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      .+.  |+.+++||+-.+....+..   ..+  ....+.|+|.|.+++.+.-..|-+|.++ ....+..+        ...
T Consensus       145 Vg~--D~~lr~WNLV~Gr~a~v~~---L~~--~at~v~w~~~Gd~F~v~~~~~i~i~q~d-~A~v~~~i--------~~~  208 (362)
T KOG0294|consen  145 VGG--DQVLRTWNLVRGRVAFVLN---LKN--KATLVSWSPQGDHFVVSGRNKIDIYQLD-NASVFREI--------ENP  208 (362)
T ss_pred             EcC--CceeeeehhhcCccceeec---cCC--cceeeEEcCCCCEEEEEeccEEEEEecc-cHhHhhhh--------hcc
Confidence            888  9999999987443333322   222  3344999999999998866788999998 33333322        122


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEE--cCCCCEEEEe
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF--ANDGQHLLSR  345 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~--s~dg~~l~s~  345 (432)
                      ..+.++.|...  ..|++|+.|+.|.+||..+...    ...+.+|             .+.|.++.+  .|++.||+++
T Consensus       209 ~r~l~~~~l~~--~~L~vG~d~~~i~~~D~ds~~~----~~~~~AH-------------~~RVK~i~~~~~~~~~~lvTa  269 (362)
T KOG0294|consen  209 KRILCATFLDG--SELLVGGDNEWISLKDTDSDTP----LTEFLAH-------------ENRVKDIASYTNPEHEYLVTA  269 (362)
T ss_pred             ccceeeeecCC--ceEEEecCCceEEEeccCCCcc----ceeeecc-------------hhheeeeEEEecCCceEEEEe
Confidence            44666666543  6889999999999999987554    6888887             789999884  4568899995


Q ss_pred             -eCCeEEEEec
Q 014005          346 -DYMNLKVFRY  355 (432)
Q Consensus       346 -~~~~i~iwd~  355 (432)
                       +||.|++||+
T Consensus       270 SSDG~I~vWd~  280 (362)
T KOG0294|consen  270 SSDGFIKVWDI  280 (362)
T ss_pred             ccCceEEEEEc
Confidence             6799999999

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.1e-24  Score=195.89  Aligned_cols=252  Identities=17%  Similarity=0.217  Sum_probs=201.1

Q ss_pred             cCCCcEE---EEEEc-CCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           30 QDVDIVS---AIEFD-KTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        30 ~h~~~V~---~~~fs-p~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      +|...|.   .+..+ |.++||.||+.||.|++|+.......                     |+..+...++.|.    
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~---------------------~s~~~~asme~Hs----   73 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE---------------------PSTPYIASMEHHS----   73 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCC---------------------cccchhhhhhhhH----
Confidence            5666666   55555 46778999999999999998764321                     2233567888899    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccC-CCCCcc
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN-PPSFAH  184 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~  184 (432)
                              +.|+++..  -.+++.|++++.|-+|++|+...+..-....+..|.           ..|.++++ .++...
T Consensus        74 --------DWVNDiiL--~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~-----------DYVkcla~~ak~~~l  132 (735)
T KOG0308|consen   74 --------DWVNDIIL--CGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK-----------DYVKCLAYIAKNNEL  132 (735)
T ss_pred             --------hHHhhHHh--hcCCCceEEecCCceEEEeecccCcchhHhhhhccc-----------chheeeeecccCcee
Confidence                    88888888  568889999999999999999876422333444455           78999999 888889


Q ss_pred             eecceeeccceEEEEeeccccc-------ceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEe
Q 014005          185 GYHLEWTENMATKIANVGNSVH-------ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV  256 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~  256 (432)
                      +++|+.  |+.|.+||++....       ......+..++...|++++.++.|..+++| -.+.+++||.++..+.++  
T Consensus       133 vaSgGL--D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk--  208 (735)
T KOG0308|consen  133 VASGGL--DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK--  208 (735)
T ss_pred             EEecCC--CccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee--
Confidence            999999  99999999984411       112222323788899999999999889999 899999999994333333  


Q ss_pred             ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc
Q 014005          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (432)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s  336 (432)
                            +.+|+..|+.+..++|| ..+++++.||+|++||+...+ |   +.++..|             ...|+++..+
T Consensus       209 ------LrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQr-C---l~T~~vH-------------~e~VWaL~~~  264 (735)
T KOG0308|consen  209 ------LRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQR-C---LATYIVH-------------KEGVWALQSS  264 (735)
T ss_pred             ------eeccccceEEEEEcCCC-CeEeecCCCceEEeeeccccc-e---eeeEEec-------------cCceEEEeeC
Confidence                  37999999999999999 999999999999999999655 4   6778887             7789999999


Q ss_pred             CCCCEEEEee-CCeEEEEec
Q 014005          337 NDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       337 ~dg~~l~s~~-~~~i~iwd~  355 (432)
                      |+=.++.+|+ ++.|..=|+
T Consensus       265 ~sf~~vYsG~rd~~i~~Tdl  284 (735)
T KOG0308|consen  265 PSFTHVYSGGRDGNIYRTDL  284 (735)
T ss_pred             CCcceEEecCCCCcEEeccc
Confidence            9999999985 499999888

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=1.8e-24  Score=186.98  Aligned_cols=251  Identities=13%  Similarity=0.121  Sum_probs=184.1

Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeee--------eecCCCCccccccccccccccccccCCC
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI--------KEMDHFPFVSSENTLLAEKNFMNEHNPP  180 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~  180 (432)
                      .+.+++.|+.+.+.| .+...+++.+..+.|.|||.....-...        ..+.+|.           ..-++++|++
T Consensus       120 ~i~h~gEVnRaRymP-Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~-----------~eg~glsWn~  187 (422)
T KOG0264|consen  120 KINHDGEVNRARYMP-QNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE-----------KEGYGLSWNR  187 (422)
T ss_pred             eccCCccchhhhhCC-CCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec-----------cccccccccc
Confidence            344459999999954 3445667778889999999864321111        1222232           2345688887


Q ss_pred             CC-cceecceeeccceEEEEeeccccc----ceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCC-CCce
Q 014005          181 SF-AHGYHLEWTENMATKIANVGNSVH----ARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEI-SDQC  252 (432)
Q Consensus       181 ~~-~~~~~~~~~~~~~v~i~d~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~-~~~~  252 (432)
                      .. ..+++++.  ++.+.+||+.....    ..+...+ .+|...|..++|++... .|++. +|+.+.|||+|. +.++
T Consensus       188 ~~~g~Lls~~~--d~~i~lwdi~~~~~~~~~~~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~  264 (422)
T KOG0264|consen  188 QQEGTLLSGSD--DHTICLWDINAESKEDKVVDPKTIF-SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP  264 (422)
T ss_pred             ccceeEeeccC--CCcEEEEeccccccCCccccceEEe-ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC
Confidence            64 45666666  99999999986533    3344556 89999999999999654 45555 999999999994 2222


Q ss_pred             eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeE
Q 014005          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (432)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  332 (432)
                      ..       ...+|.+.|++++|+|-+..+||+|+.|++|++||+|+-..+   +..+.+|             ...|..
T Consensus       265 ~~-------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~---lh~~e~H-------------~dev~~  321 (422)
T KOG0264|consen  265 SH-------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP---LHTFEGH-------------EDEVFQ  321 (422)
T ss_pred             cc-------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC---ceeccCC-------------CcceEE
Confidence            22       348999999999999988799999999999999999976654   6888887             899999


Q ss_pred             EEEcCCC-CEEEE-eeCCeEEEEec--------------CcceeEeecceeeeehhhhhcccccccccce-eeEEEEeec
Q 014005          333 IKFANDG-QHLLS-RDYMNLKVFRY--------------EPVMTLSFCGIYVWILRQLQHSRFMSIYALS-CVIYIITTL  395 (432)
Q Consensus       333 ~~~s~dg-~~l~s-~~~~~i~iwd~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~  395 (432)
                      +.|||+. ..||+ |.|+++.+||+              .+...+-.|+.        ++.++++...+. ..+.|++.+
T Consensus       322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG--------H~~kV~DfsWnp~ePW~I~Sva  393 (422)
T KOG0264|consen  322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG--------HTAKVSDFSWNPNEPWTIASVA  393 (422)
T ss_pred             EEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecC--------cccccccccCCCCCCeEEEEec
Confidence            9999985 46666 46799999999              12223344554        455666655554 456799999


Q ss_pred             ccceeeeecc
Q 014005          396 YLINLSALSA  405 (432)
Q Consensus       396 ~~~~i~~~~~  405 (432)
                      .|+.+.||.-
T Consensus       394 eDN~LqIW~~  403 (422)
T KOG0264|consen  394 EDNILQIWQM  403 (422)
T ss_pred             CCceEEEeec
Confidence            9999999994

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6e-24  Score=185.19  Aligned_cols=278  Identities=15%  Similarity=0.158  Sum_probs=203.3

Q ss_pred             cccCCCcEEEEEEcCCCCE-EEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      .....+.|++++|+|...+ +|+.+. -.+.||+..+....                           .++...+     
T Consensus        22 ~~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~---------------------------k~~srFk-----   68 (487)
T KOG0310|consen   22 VHKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR---------------------------KTFSRFK-----   68 (487)
T ss_pred             cccccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhh---------------------------hhHHhhc-----
Confidence            3455678999999997654 444333 47999998775432                           2333333     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-ce
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HG  185 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~  185 (432)
                             +.|.++.|  -.||++++.|...|.|+++|+.+..  .+..+..|.           .++..+.|+|... .+
T Consensus        69 -------~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~--iLR~~~ah~-----------apv~~~~f~~~d~t~l  126 (487)
T KOG0310|consen   69 -------DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRV--ILRQLYAHQ-----------APVHVTKFSPQDNTML  126 (487)
T ss_pred             -------cceeEEEe--ecCCeEEEccCCcCcEEEeccccHH--HHHHHhhcc-----------CceeEEEecccCCeEE
Confidence                   88999999  7899999999999999999976643  222334444           7788899988754 55


Q ss_pred             ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (432)
                      +.|+.  |+.+++||+.   +......+ .+|++.|.|.+++|... .+++| .||.|++||++.....+..        
T Consensus       127 ~s~sD--d~v~k~~d~s---~a~v~~~l-~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e--------  192 (487)
T KOG0310|consen  127 VSGSD--DKVVKYWDLS---TAYVQAEL-SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE--------  192 (487)
T ss_pred             EecCC--CceEEEEEcC---CcEEEEEe-cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE--------
Confidence            66666  8899999998   44443345 89999999999999755 67788 9999999999955444443        


Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  343 (432)
                      -.|..+|..+.+-|.| .++|+++. +.|++||+.+|...   +..+..|             ...|+++.+..++..|+
T Consensus       193 lnhg~pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~G~ql---l~~~~~H-------------~KtVTcL~l~s~~~rLl  254 (487)
T KOG0310|consen  193 LNHGCPVESVLALPSG-SLIASAGG-NSVKVWDLTTGGQL---LTSMFNH-------------NKTVTCLRLASDSTRLL  254 (487)
T ss_pred             ecCCCceeeEEEcCCC-CEEEEcCC-CeEEEEEecCCcee---hhhhhcc-------------cceEEEEEeecCCceEe
Confidence            4788999999999998 89998874 48999999966542   4555556             68999999999999999


Q ss_pred             Eee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          344 SRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       344 s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      +|+ |+.+++||+   +.+..+..+.+            +.++.....-..++.|-.+|-+.+-.
T Consensus       255 S~sLD~~VKVfd~t~~Kvv~s~~~~~p------------vLsiavs~dd~t~viGmsnGlv~~rr  307 (487)
T KOG0310|consen  255 SGSLDRHVKVFDTTNYKVVHSWKYPGP------------VLSIAVSPDDQTVVIGMSNGLVSIRR  307 (487)
T ss_pred             ecccccceEEEEccceEEEEeeecccc------------eeeEEecCCCceEEEecccceeeeeh
Confidence            874 599999998   44555554442            22222222222466777777777664

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=1.3e-24  Score=173.71  Aligned_cols=209  Identities=20%  Similarity=0.267  Sum_probs=176.1

Q ss_pred             CCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005           24 NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (432)
Q Consensus        24 ~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~  103 (432)
                      .+...++|...|.+++|+.|.++|++|+.+..+||||++..+.                          +...+.+|.  
T Consensus        92 delhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A--------------------------pp~E~~ght--  143 (334)
T KOG0278|consen   92 DELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA--------------------------PPKEISGHT--  143 (334)
T ss_pred             hhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC--------------------------CchhhcCCC--
Confidence            5667789999999999999999999999999999999988653                          235788999  


Q ss_pred             ccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (432)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  183 (432)
                                +.|..+-|| + ..+.+++++.|++|++||.+++.......++              ..+.++..++++.
T Consensus       144 ----------g~Ir~v~wc-~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~--------------s~VtSlEvs~dG~  197 (334)
T KOG0278|consen  144 ----------GGIRTVLWC-H-EDKCILSSADDKTVRLWDHRTGTEVQSLEFN--------------SPVTSLEVSQDGR  197 (334)
T ss_pred             ----------CcceeEEEe-c-cCceEEeeccCCceEEEEeccCcEEEEEecC--------------CCCcceeeccCCC
Confidence                      999999997 3 4457888899999999999999855544443              5788899999998


Q ss_pred             ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (432)
                      ++.+..   .+.|++||..   ....++.+  .....|.+...+|+...+++| .|..++-||.. ++..+..+      
T Consensus       198 ilTia~---gssV~Fwdak---sf~~lKs~--k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~-TgeEi~~~------  262 (334)
T KOG0278|consen  198 ILTIAY---GSSVKFWDAK---SFGLLKSY--KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYN-TGEEIGSY------  262 (334)
T ss_pred             EEEEec---CceeEEeccc---cccceeec--cCccccccccccCCCceEEecCcceEEEEEecc-CCceeeec------
Confidence            887765   6789999998   56666665  456789999999999999999 99999999999 55544432      


Q ss_pred             cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      ..+|.++|.++.|+|+| ...|+|+.||+|+||.+..++.
T Consensus       263 nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  263 NKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecCCCc
Confidence            27999999999999999 9999999999999999887654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=2.5e-23  Score=167.47  Aligned_cols=230  Identities=15%  Similarity=0.188  Sum_probs=183.5

Q ss_pred             CccccCCCcEEEEEEcCC-CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005           26 DEELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (432)
Q Consensus        26 ~~~~~h~~~V~~~~fsp~-g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~  104 (432)
                      ...-.|.+.|-.+.|+|. ...+++++.|.+|++||+..++..                           ......    
T Consensus        58 ~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~---------------------------~~i~~~----  106 (313)
T KOG1407|consen   58 LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT---------------------------ARIETK----  106 (313)
T ss_pred             hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE---------------------------EEeecc----
Confidence            334578889999999885 468999999999999999987632                           333222    


Q ss_pred             cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                               ..-.-+.|  +|+|.+++.++.|..|.+.|.++.+......+.              -.+..+.|+.++.+
T Consensus       107 ---------~eni~i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--------------~e~ne~~w~~~nd~  161 (313)
T KOG1407|consen  107 ---------GENINITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK--------------FEVNEISWNNSNDL  161 (313)
T ss_pred             ---------CcceEEEE--cCCCCEEEEecCcccEEEEEecccceeehhccc--------------ceeeeeeecCCCCE
Confidence                     22345788  899999999999999999999877644333322              34455677655554


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (432)
                      +.....  .|.|.|....   .-++++.+ ++|.....|+.|+|+|++||+| .|..+.+||++ .--|.+.+       
T Consensus       162 Fflt~G--lG~v~ILsyp---sLkpv~si-~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~-ELiC~R~i-------  227 (313)
T KOG1407|consen  162 FFLTNG--LGCVEILSYP---SLKPVQSI-KAHPSNCICIEFDPDGRYFATGSADALVSLWDVD-ELICERCI-------  227 (313)
T ss_pred             EEEecC--CceEEEEecc---cccccccc-ccCCcceEEEEECCCCceEeeccccceeeccChh-Hhhhheee-------
Confidence            443333  5788888877   67888888 8999999999999999999999 99999999999 66787776       


Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  343 (432)
                      ..+.-+|+.+.|+.+| ++||+|++|-.|-|=+..+|..    +..++.              .++...++|+|...+||
T Consensus       228 sRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd~----~~eI~~--------------~~~t~tVAWHPk~~LLA  288 (313)
T KOG1407|consen  228 SRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGDR----VWEIPC--------------EGPTFTVAWHPKRPLLA  288 (313)
T ss_pred             ccccCceEEEEeccCc-ceeeccCccceEEeEecccCCe----EEEeec--------------cCCceeEEecCCCceee
Confidence            7888899999999999 9999999999999999999986    344544              67889999999998888


Q ss_pred             E
Q 014005          344 S  344 (432)
Q Consensus       344 s  344 (432)
                      -
T Consensus       289 y  289 (313)
T KOG1407|consen  289 Y  289 (313)
T ss_pred             E
Confidence            5

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=1.5e-23  Score=172.68  Aligned_cols=229  Identities=20%  Similarity=0.255  Sum_probs=177.3

Q ss_pred             eeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCccee-eeeec------CCCCcccccccc
Q 014005           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEM------DHFPFVSSENTL  167 (432)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~------~~~~~~~~~~~~  167 (432)
                      ..+..|+            ..+.+.+|  ++||.++++|+.|-.|+|.|++.-..+ ....+      ..|+. . -.-.
T Consensus       106 ~ylt~HK------------~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPv-I-RTlY  169 (430)
T KOG0640|consen  106 KYLTSHK------------SPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPV-I-RTLY  169 (430)
T ss_pred             EEEeecc------------cceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCce-E-eehh
Confidence            4566787            99999999  999999999999999999998731100 00000      00110 0 0001


Q ss_pred             ccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 014005          168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  246 (432)
Q Consensus       168 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~  246 (432)
                      .....|.++.|+|....+++++.  |+.|+++|+......+..+.+  .....+.++.|+|.|.++++| +-.++++||+
T Consensus       170 DH~devn~l~FHPre~ILiS~sr--D~tvKlFDfsK~saKrA~K~~--qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv  245 (430)
T KOG0640|consen  170 DHVDEVNDLDFHPRETILISGSR--DNTVKLFDFSKTSAKRAFKVF--QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDV  245 (430)
T ss_pred             hccCcccceeecchhheEEeccC--CCeEEEEecccHHHHHHHHHh--hccceeeeEeecCCCceEEEecCCCceeEEec
Confidence            12378999999999999999999  999999999865444445554  345689999999999999999 8899999999


Q ss_pred             CCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc-cccccCCccceee
Q 014005          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD-AAESHGSKSFFTE  325 (432)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~  325 (432)
                      + +-+++..-    ..-..|.+.|+++.+++.+ ++.++|+.||.|+|||--+++-    +.++.. |            
T Consensus       246 ~-T~Qcfvsa----nPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rC----v~t~~~AH------------  303 (430)
T KOG0640|consen  246 N-TYQCFVSA----NPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRC----VRTIGNAH------------  303 (430)
T ss_pred             c-ceeEeeec----CcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHH----HHHHHhhc------------
Confidence            9 67776543    1236899999999999999 9999999999999999877663    455543 3            


Q ss_pred             eecceeEEEEcCCCCEEEEe-eCCeEEEEec---CcceeEeecc
Q 014005          326 IIASISDIKFANDGQHLLSR-DYMNLKVFRY---EPVMTLSFCG  365 (432)
Q Consensus       326 ~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~~  365 (432)
                      ....|.+..|..+|+||+++ -|..+++|.+   ++++++...+
T Consensus       304 ~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg  347 (430)
T KOG0640|consen  304 GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG  347 (430)
T ss_pred             CCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCC
Confidence            14689999999999999985 5699999999   7888887653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4.7e-23  Score=192.46  Aligned_cols=248  Identities=14%  Similarity=0.205  Sum_probs=194.8

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCc-CCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK-NTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ..|+..-+.|+|.|+|++|.+++.||.|++|+..... ..                           .++.-+.      
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P---------------------------~ti~~~g------   56 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP---------------------------ETIDISG------   56 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC---------------------------chhhccC------
Confidence            4688899999999999999999999999999976652 11                           1222244      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCccee-eeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                            ..|.+++-    ++.+|++|+.+++|.+|.+..++.. .+..+.              -++++++++-++.+++
T Consensus        57 ------~~v~~ia~----~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft--------------lp~r~~~v~g~g~~ia  112 (933)
T KOG1274|consen   57 ------ELVSSIAC----YSNHFLTGSEQNTVLRYKFPSGEEDTILARFT--------------LPIRDLAVSGSGKMIA  112 (933)
T ss_pred             ------ceeEEEee----cccceEEeeccceEEEeeCCCCCccceeeeee--------------ccceEEEEecCCcEEE
Confidence                  67777776    4569999999999999999877643 222222              5688999999999999


Q ss_pred             cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      .|+.  |-.|++.++.   +....+.+ .+|+++|.++.++|++++||+. -||+|++||++ .+.+...+..-......
T Consensus       113 agsd--D~~vK~~~~~---D~s~~~~l-rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~-~~~~~~tl~~v~k~n~~  185 (933)
T KOG1274|consen  113 AGSD--DTAVKLLNLD---DSSQEKVL-RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ-DGILSKTLTGVDKDNEF  185 (933)
T ss_pred             eecC--ceeEEEEecc---ccchheee-cccCCceeeeeEcCCCCEEEEEecCceEEEEEcc-cchhhhhcccCCccccc
Confidence            9999  9999999998   66677777 8999999999999999999999 99999999999 56555544221111122


Q ss_pred             C-CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          266 L-TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       266 ~-~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      - ...+..++|+|++ ..|+....|+.|++|+..++..    ...+...           .+...+..++|+|+|+|||+
T Consensus       186 ~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~----~f~Lr~~-----------~~ss~~~~~~wsPnG~YiAA  249 (933)
T KOG1274|consen  186 ILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWEL----QFKLRDK-----------LSSSKFSDLQWSPNGKYIAA  249 (933)
T ss_pred             cccceeeeeeecCCC-CeEEeeccCCeEEEEccCCcee----heeeccc-----------ccccceEEEEEcCCCcEEee
Confidence            2 4567889999998 6777888899999999988776    3444431           01344899999999999999


Q ss_pred             eeC-CeEEEEecC
Q 014005          345 RDY-MNLKVFRYE  356 (432)
Q Consensus       345 ~~~-~~i~iwd~~  356 (432)
                      ++- |.|.|||++
T Consensus       250 s~~~g~I~vWnv~  262 (933)
T KOG1274|consen  250 STLDGQILVWNVD  262 (933)
T ss_pred             eccCCcEEEEecc
Confidence            855 999999993

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4.3e-23  Score=178.61  Aligned_cols=291  Identities=16%  Similarity=0.167  Sum_probs=211.8

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      .+.|+++.|+|....|++|+.||+++||.++.+...                         .++.+.-..          
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-------------------------~lqS~~l~~----------  257 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-------------------------KLQSIHLEK----------  257 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-------------------------hheeeeecc----------
Confidence            568999999999999999999999999999887532                         234443334          


Q ss_pred             hhcceeEEEEEEcCCCC-EEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          112 IEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                        .+|.+..|  .|+|+ .+++++....++.||+.+.+..++.......          +..+.....++++.+++..+.
T Consensus       258 --fPi~~a~f--~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e----------~~~~e~FeVShd~~fia~~G~  323 (514)
T KOG2055|consen  258 --FPIQKAEF--APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE----------EKSMERFEVSHDSNFIAIAGN  323 (514)
T ss_pred             --Cccceeee--cCCCceEEEecccceEEEEeeccccccccccCCCCcc----------cchhheeEecCCCCeEEEccc
Confidence              78999999  78998 8999999999999999998877766555443          256777888999999999888


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                        .|.|.+....   +...+..+  ...+.+..++|+.+++.|++. .+|.|.+||++ ...+++.+.      ..-.-.
T Consensus       324 --~G~I~lLhak---T~eli~s~--KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~-~~~~~~rf~------D~G~v~  389 (514)
T KOG2055|consen  324 --NGHIHLLHAK---TKELITSF--KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLR-QNSCLHRFV------DDGSVH  389 (514)
T ss_pred             --CceEEeehhh---hhhhhhee--eeccEEeeEEEecCCcEEEEEcCCceEEEEecC-CcceEEEEe------ecCccc
Confidence              8899888877   55555555  456789999999999988877 99999999999 567777761      111113


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc--ccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~  347 (432)
                      =++++.++++ .+||+|+..|.|.|||..+...  ..++++.+..             ....|++++|++|++.||.++.
T Consensus       390 gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN-------------Ltt~Itsl~Fn~d~qiLAiaS~  455 (514)
T KOG2055|consen  390 GTSLCISLNG-SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN-------------LTTAITSLQFNHDAQILAIASR  455 (514)
T ss_pred             eeeeeecCCC-ceEEeccCcceEEEeccchhhccCCCCchhhhhh-------------hheeeeeeeeCcchhhhhhhhh
Confidence            4678889999 9999999999999999764221  0111222222             2568999999999999987533


Q ss_pred             ---CeEEEEecCcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          348 ---MNLKVFRYEPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       348 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                         +.+|+-.+.....|.--..   ...-+ . ....+.++....+++.|...|.+.+|.
T Consensus       456 ~~knalrLVHvPS~TVFsNfP~---~n~~v-g-~vtc~aFSP~sG~lAvGNe~grv~l~k  510 (514)
T KOG2055|consen  456 VKKNALRLVHVPSCTVFSNFPT---SNTKV-G-HVTCMAFSPNSGYLAVGNEAGRVHLFK  510 (514)
T ss_pred             ccccceEEEeccceeeeccCCC---CCCcc-c-ceEEEEecCCCceEEeecCCCceeeEe
Confidence               7888877722222222111   00001 1 111222333344788999999999996

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.1e-22  Score=166.40  Aligned_cols=275  Identities=15%  Similarity=0.176  Sum_probs=202.0

Q ss_pred             EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcC
Q 014005           46 YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP  125 (432)
Q Consensus        46 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~  125 (432)
                      .|++|++...|.=+++.-....     +.          -...|.......+++|.            ..|++++.    
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~-----~~----------~s~~~~l~~lF~~~aH~------------~sitavAV----   51 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKG-----CT----------DSVKPTLKPLFAFSAHA------------GSITALAV----   51 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccc-----cc----------cccceeeeccccccccc------------cceeEEEe----
Confidence            3677888877766666432200     00          02233445566788898            99999999    


Q ss_pred             CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc--ceecceeeccceEEEEeecc
Q 014005          126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA--HGYHLEWTENMATKIANVGN  203 (432)
Q Consensus       126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~v~i~d~~~  203 (432)
                      ++.++++|+.|.+|+|||+....  .+..+-.|.           +.|+++.|.+...  ++.++..  ||.+.+|+.. 
T Consensus        52 s~~~~aSGssDetI~IYDm~k~~--qlg~ll~Ha-----------gsitaL~F~~~~S~shLlS~sd--DG~i~iw~~~-  115 (362)
T KOG0294|consen   52 SGPYVASGSSDETIHIYDMRKRK--QLGILLSHA-----------GSITALKFYPPLSKSHLLSGSD--DGHIIIWRVG-  115 (362)
T ss_pred             cceeEeccCCCCcEEEEeccchh--hhcceeccc-----------cceEEEEecCCcchhheeeecC--CCcEEEEEcC-
Confidence            68999999999999999998765  333344444           8999999988875  8888888  9999999999 


Q ss_pred             cccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcE
Q 014005          204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  282 (432)
Q Consensus       204 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  282 (432)
                        ...++..+ ++|.+.|+.++.+|.+++.++. .|+.+++||+- .++.-...++      .  ..-+.+.|+|.| .+
T Consensus       116 --~W~~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV-~Gr~a~v~~L------~--~~at~v~w~~~G-d~  182 (362)
T KOG0294|consen  116 --SWELLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV-RGRVAFVLNL------K--NKATLVSWSPQG-DH  182 (362)
T ss_pred             --CeEEeeee-cccccccceeEecCCCceEEEEcCCceeeeehhh-cCccceeecc------C--CcceeeEEcCCC-CE
Confidence              88999999 8999999999999999987776 99999999997 4544433311      1  223449999999 88


Q ss_pred             EEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec---Ccc
Q 014005          283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY---EPV  358 (432)
Q Consensus       283 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~  358 (432)
                      |+.++.+ .|-+|.+.+.++    ...+..              ...+.++.|-..+ +|++| +++.|.+||.   .++
T Consensus       183 F~v~~~~-~i~i~q~d~A~v----~~~i~~--------------~~r~l~~~~l~~~-~L~vG~d~~~i~~~D~ds~~~~  242 (362)
T KOG0294|consen  183 FVVSGRN-KIDIYQLDNASV----FREIEN--------------PKRILCATFLDGS-ELLVGGDNEWISLKDTDSDTPL  242 (362)
T ss_pred             EEEEecc-EEEEEecccHhH----hhhhhc--------------cccceeeeecCCc-eEEEecCCceEEEeccCCCccc
Confidence            8877766 689999987664    233333              2456777777554 55555 6699999999   677


Q ss_pred             eeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccCCee
Q 014005          359 MTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAGMDS  409 (432)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~  409 (432)
                      ..+..|+.         +.+-...+.+....+++|.+.||.|+||+..++.
T Consensus       243 ~~~~AH~~---------RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  243 TEFLAHEN---------RVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             eeeecchh---------heeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence            88888874         3232223334445689999999999999966553

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=2.6e-24  Score=180.71  Aligned_cols=259  Identities=13%  Similarity=0.134  Sum_probs=198.0

Q ss_pred             cchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccc
Q 014005            3 LNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMD   82 (432)
Q Consensus         3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   82 (432)
                      .++..+.....|.++|.-.   ......|.+.|..|.++.  ..+++++.|.+|+.|.++..-                 
T Consensus        83 aSGs~DG~VkiWnlsqR~~---~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p-----------------  140 (433)
T KOG0268|consen   83 ASGSCDGEVKIWNLSQREC---IRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPP-----------------  140 (433)
T ss_pred             hccccCceEEEEehhhhhh---hheeecccCceeeEEecc--cceEEecCCcceeeeeccCCc-----------------
Confidence            3456678889999997322   123346888999999987  568899999999999987731                 


Q ss_pred             ccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccc
Q 014005           83 FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS  162 (432)
Q Consensus        83 ~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  162 (432)
                                 ..++.+.             ..+..|.-  +..+..++|++.  .|.|||.......  ..+....   
T Consensus       141 -----------~~tilg~-------------s~~~gIdh--~~~~~~FaTcGe--~i~IWD~~R~~Pv--~smswG~---  187 (433)
T KOG0268|consen  141 -----------LHTILGK-------------SVYLGIDH--HRKNSVFATCGE--QIDIWDEQRDNPV--SSMSWGA---  187 (433)
T ss_pred             -----------ceeeecc-------------cccccccc--ccccccccccCc--eeeecccccCCcc--ceeecCC---
Confidence                       2344443             34556665  455678888875  5999999766533  3333333   


Q ss_pred             cccccccccccccccCCCCCcceecce-eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe
Q 014005          163 SENTLLAEKNFMNEHNPPSFAHGYHLE-WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR  240 (432)
Q Consensus       163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~  240 (432)
                              ..|.++.|+|....++.++ .  |+.+.+||++   ...+++.+  -.+..-+.|+|+|++-.+++| .|..
T Consensus       188 --------Dti~svkfNpvETsILas~~s--DrsIvLyD~R---~~~Pl~KV--i~~mRTN~IswnPeafnF~~a~ED~n  252 (433)
T KOG0268|consen  188 --------DSISSVKFNPVETSILASCAS--DRSIVLYDLR---QASPLKKV--ILTMRTNTICWNPEAFNFVAANEDHN  252 (433)
T ss_pred             --------CceeEEecCCCcchheeeecc--CCceEEEecc---cCCcccee--eeeccccceecCccccceeecccccc
Confidence                    6788999999987766554 5  9999999999   66666654  234467889999988888899 9999


Q ss_pred             EEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc
Q 014005          241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK  320 (432)
Q Consensus       241 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~  320 (432)
                      ++.+|++.-..++...       .+|.+.|.+++|+|.| +-|++|+.|.+|+||..+.+.-    ...+..        
T Consensus       253 lY~~DmR~l~~p~~v~-------~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~S----RdiYht--------  312 (433)
T KOG0268|consen  253 LYTYDMRNLSRPLNVH-------KDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHS----RDIYHT--------  312 (433)
T ss_pred             ceehhhhhhcccchhh-------cccceeEEEeccCCCc-chhccccccceEEEeecCCCcc----hhhhhH--------
Confidence            9999999666676665       8999999999999999 9999999999999999987653    111111        


Q ss_pred             cceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          321 SFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       321 ~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                          .....|.++.||.|.+|+++|+| +.|++|.-
T Consensus       313 ----kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  313 ----KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             ----hhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence                01357999999999999999977 99999988

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=7.4e-25  Score=199.22  Aligned_cols=237  Identities=19%  Similarity=0.301  Sum_probs=202.1

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|...|.|+..-..++.+++|+.|..+-+|.+....                           .+..+.+|+       
T Consensus        25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~---------------------------~i~S~~~he-------   70 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN---------------------------AITSLTGHE-------   70 (825)
T ss_pred             hhhhhhhceeeeeccceeeccCCCceeeccccccCCc---------------------------hhheeeccC-------
Confidence            3678899999988888999999999999999987644                           235688999       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           ..|.++.|  +++..+++.|+.+|+|++||++..+  .+..+.+|.           ..+..+.|+|-+.|.+.|
T Consensus        71 -----spIeSl~f--~~~E~LlaagsasgtiK~wDleeAk--~vrtLtgh~-----------~~~~sv~f~P~~~~~a~g  130 (825)
T KOG0267|consen   71 -----SPIESLTF--DTSERLLAAGSASGTIKVWDLEEAK--IVRTLTGHL-----------LNITSVDFHPYGEFFASG  130 (825)
T ss_pred             -----Ccceeeec--CcchhhhcccccCCceeeeehhhhh--hhhhhhccc-----------cCcceeeeccceEEeccc
Confidence                 99999999  8888999999999999999999776  333455555           678889999999999888


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      +.  |+.+++||.+   ...|...+ .+|...+.+++|+|+|++++.| +|.++++||.. .++.+..|       ..|.
T Consensus       131 St--dtd~~iwD~R---k~Gc~~~~-~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~-agk~~~ef-------~~~e  196 (825)
T KOG0267|consen  131 ST--DTDLKIWDIR---KKGCSHTY-KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT-AGKLSKEF-------KSHE  196 (825)
T ss_pred             cc--cccceehhhh---ccCceeee-cCCcceeEEEeecCCCceeeccCCcceeeeeccc-cccccccc-------cccc
Confidence            88  9999999999   77899999 7899999999999999999999 99999999998 67777765       8899


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~  347 (432)
                      ..+..+.|+|.. -++++|+.|+++++||+++-++    +.....-             ...|.+.+|+|+|+.+++|..
T Consensus       197 ~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~----I~s~~~~-------------~~~v~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  197 GKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEV----ISSGKPE-------------TDGVRSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             ccccccccCchh-hhhccCCCCceeeeeccceeEE----eeccCCc-------------cCCceeeeecCCceeeecCch
Confidence            999999999998 9999999999999999997654    2222221             468999999999999999865


Q ss_pred             CeEE
Q 014005          348 MNLK  351 (432)
Q Consensus       348 ~~i~  351 (432)
                      -.+.
T Consensus       259 ~sl~  262 (825)
T KOG0267|consen  259 ISLS  262 (825)
T ss_pred             hhhh
Confidence            3333

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.5e-22  Score=165.92  Aligned_cols=252  Identities=15%  Similarity=0.207  Sum_probs=180.3

Q ss_pred             EEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhc
Q 014005           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (432)
Q Consensus        35 V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  114 (432)
                      ..|+.|++.|.+||+|+.||.|.|||+.+....                           ..+.+|.            .
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia---------------------------r~lsaH~------------~   66 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA---------------------------RMLSAHV------------R   66 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchh---------------------------hhhhccc------------c
Confidence            789999999999999999999999999886533                           6788999            9


Q ss_pred             ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  194 (432)
                      +|.+++|  +++|++|+|++.|..|++||+..|.+.....+.              ++|..+.|+|........... +.
T Consensus        67 pi~sl~W--S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~--------------spv~~~q~hp~k~n~~va~~~-~~  129 (405)
T KOG1273|consen   67 PITSLCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD--------------SPVWGAQWHPRKRNKCVATIM-EE  129 (405)
T ss_pred             ceeEEEe--cCCCCEeeeecCCceeEEEeccCCCceeEEEcc--------------CccceeeeccccCCeEEEEEe-cC
Confidence            9999999  999999999999999999999988855554443              678888888875544443332 22


Q ss_pred             eEEEEeecccccceeeEEeecCCCC----CeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          195 ATKIANVGNSVHARCQKVYPHAHDF----NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       195 ~v~i~d~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                      ...+-++... ...++.   ....+    ...+..|.+.|+++++| ..|.+.++|.+ +.+++..+.+.      ....
T Consensus       130 sp~vi~~s~~-~h~~Lp---~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~-t~e~vas~rit------s~~~  198 (405)
T KOG1273|consen  130 SPVVIDFSDP-KHSVLP---KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE-TLECVASFRIT------SVQA  198 (405)
T ss_pred             CcEEEEecCC-ceeecc---CCCccccccccccccccCCCCEEEEecCcceEEEEecc-hheeeeeeeec------hhee
Confidence            2333333310 111211   11111    12233588999999999 99999999999 56676655221      1356


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccc-----cccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC-----DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      |.++.++..| ..|+.-+.|..||.|+++.--.+     ....+.++.-    .       ....-.+++||.||.|++.
T Consensus       199 IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv----V-------Nk~~Wk~ccfs~dgeYv~a  266 (405)
T KOG1273|consen  199 IKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV----V-------NKLQWKKCCFSGDGEYVCA  266 (405)
T ss_pred             eeEEEEeccC-cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH----H-------hhhhhhheeecCCccEEEe
Confidence            8999999999 99999999999999998731100     0001111110    0       0234567899999999998


Q ss_pred             eeC--CeEEEEec---CcceeEeecc
Q 014005          345 RDY--MNLKVFRY---EPVMTLSFCG  365 (432)
Q Consensus       345 ~~~--~~i~iwd~---~~~~~~~~~~  365 (432)
                      |+.  ..++||.-   ..++.+.+..
T Consensus       267 ~s~~aHaLYIWE~~~GsLVKILhG~k  292 (405)
T KOG1273|consen  267 GSARAHALYIWEKSIGSLVKILHGTK  292 (405)
T ss_pred             ccccceeEEEEecCCcceeeeecCCc
Confidence            754  89999998   6667666654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=7.5e-23  Score=169.21  Aligned_cols=276  Identities=13%  Similarity=0.184  Sum_probs=206.7

Q ss_pred             CCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCC-----Cccccchhhhcccccc------c-cccC-Cc
Q 014005           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTP-----NQHISRSELEKQMDFT------S-TSHP-EY   91 (432)
Q Consensus        25 ~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~------~-~~~p-~~   91 (432)
                      ..+-.+|.+.|+|++|++.+.++++++.|++-.||...-.-..+     ..+....+.+..+.-.      . +-.| -.
T Consensus       183 L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR  262 (481)
T KOG0300|consen  183 LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR  262 (481)
T ss_pred             eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence            34445799999999999999999999999999999843221111     1111222222222111      0 1111 23


Q ss_pred             ceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccc
Q 014005           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  171 (432)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (432)
                      .++..+.+|.            ..|.+..|  -..|+.+++++.|++..+||++++.+.  ..+.+|.           .
T Consensus       263 vPl~~ltgH~------------~vV~a~dW--L~gg~Q~vTaSWDRTAnlwDVEtge~v--~~LtGHd-----------~  315 (481)
T KOG0300|consen  263 VPLMRLTGHR------------AVVSACDW--LAGGQQMVTASWDRTANLWDVETGEVV--NILTGHD-----------S  315 (481)
T ss_pred             eeeeeeeccc------------cceEehhh--hcCcceeeeeeccccceeeeeccCcee--ccccCcc-----------h
Confidence            4557788998            99999999  568999999999999999999999843  3445555           6


Q ss_pred             ccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC
Q 014005          172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD  250 (432)
Q Consensus       172 ~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~  250 (432)
                      ....+.-+|...++++.+.  |.+.++||++.  ....+..| .+|...|++..|+.+. .+++| +|.+|++||++++.
T Consensus       316 ELtHcstHptQrLVvTsSr--DtTFRLWDFRe--aI~sV~VF-QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMR  389 (481)
T KOG0300|consen  316 ELTHCSTHPTQRLVVTSSR--DTTFRLWDFRE--AIQSVAVF-QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMR  389 (481)
T ss_pred             hccccccCCcceEEEEecc--CceeEeccchh--hcceeeee-cccccceeEEEEecCC-ceeecCCCceEEEeeecccc
Confidence            7788888999999999998  99999999983  55667777 8999999999999776 57777 99999999999877


Q ss_pred             ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecce
Q 014005          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (432)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v  330 (432)
                      ..+.++        ...++++.++.+..+ .++|.--.+..|++||+...++..-+...-++|             ...|
T Consensus       390 splATI--------RtdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH-------------rRMV  447 (481)
T KOG0300|consen  390 SPLATI--------RTDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH-------------RRMV  447 (481)
T ss_pred             Ccceee--------ecCCccceeEeecCC-ceEEeccCCceEEEEecCCCccccCCccccccc-------------ceee
Confidence            777765        345678999999887 899998889999999998655421112233454             7899


Q ss_pred             eEEEEcCCC---CEEEEeeCCeEEEEec
Q 014005          331 SDIKFANDG---QHLLSRDYMNLKVFRY  355 (432)
Q Consensus       331 ~~~~~s~dg---~~l~s~~~~~i~iwd~  355 (432)
                      .+++|..+.   .++.+|-|..+.=|++
T Consensus       448 ~c~AW~eehp~cnLftcGFDR~v~gW~i  475 (481)
T KOG0300|consen  448 TCCAWLEEHPACNLFTCGFDRMVAGWKI  475 (481)
T ss_pred             eeeeccccCcccccccccccceeeeeEe
Confidence            999998763   4455567789999987

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3.4e-23  Score=189.86  Aligned_cols=259  Identities=14%  Similarity=0.227  Sum_probs=193.6

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      .....+|+.+++-..++.++.. .++|+.++.....                       ..+...+.+.+..+       
T Consensus        39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~-----------------------~~~~~~~k~kqn~~-------   87 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFS-----------------------EKCNHRFKTKQNKF-------   87 (839)
T ss_pred             ccccceEeecCCcceeEEeccc-ceeeEeeCcccCC-----------------------cceeeeccccccee-------
Confidence            4456778888888888888775 7888887654321                       11111122221000       


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc-ceeeeeecCCCCccccccccccccccccccCCCCC-cceecce
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYHLE  189 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~  189 (432)
                        ..+..+.|. .-+.++||+++..|.|.+||+... ..+.+..+..|.           -.+..+.|++.. ..+++|+
T Consensus        88 --~S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~-----------Rs~~~ldfh~tep~iliSGS  153 (839)
T KOG0269|consen   88 --YSAADVKWG-QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHE-----------RSANKLDFHSTEPNILISGS  153 (839)
T ss_pred             --eehhhcccc-cchhhhheeecCCCcEEEEecCccccchhhhHhhhhc-----------cceeeeeeccCCccEEEecC
Confidence              456678885 456789999999999999999762 222333444455           778899998875 5667788


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      .  ||.|++||++   ..+...++ .+....|..+.|+|. +..|+++ +.|.+.+||++...++...+       ..|.
T Consensus       154 Q--Dg~vK~~DlR---~~~S~~t~-~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~-------~AH~  220 (839)
T KOG0269|consen  154 Q--DGTVKCWDLR---SKKSKSTF-RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKL-------TAHN  220 (839)
T ss_pred             C--CceEEEEeee---cccccccc-cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHh-------hccc
Confidence            8  9999999999   56666666 677889999999995 6778888 99999999999888877755       8999


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE-EEEe-
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSR-  345 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~-l~s~-  345 (432)
                      ++|.++.|+|++ .+||+||.|+.|+|||+.+++...  +.++..              ..+|..++|-|+.++ ||++ 
T Consensus       221 GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~--~~tInT--------------iapv~rVkWRP~~~~hLAtcs  283 (839)
T KOG0269|consen  221 GPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKP--KHTINT--------------IAPVGRVKWRPARSYHLATCS  283 (839)
T ss_pred             CceEEEeecCCC-ceeeecCCCccEEEEeccCCCccc--eeEEee--------------cceeeeeeeccCccchhhhhh
Confidence            999999999988 999999999999999999765421  344444              579999999998765 5553 


Q ss_pred             --eCCeEEEEec----CcceeEeecc
Q 014005          346 --DYMNLKVFRY----EPVMTLSFCG  365 (432)
Q Consensus       346 --~~~~i~iwd~----~~~~~~~~~~  365 (432)
                        .|-.|+|||+    -|..++.-|.
T Consensus       284 mv~dtsV~VWDvrRPYIP~~t~~eH~  309 (839)
T KOG0269|consen  284 MVVDTSVHVWDVRRPYIPYATFLEHT  309 (839)
T ss_pred             ccccceEEEEeeccccccceeeeccC
Confidence              4589999999    4555665554

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.91  E-value=1.7e-22  Score=183.14  Aligned_cols=315  Identities=16%  Similarity=0.197  Sum_probs=219.7

Q ss_pred             ccccCCCcEEEEEEcCCCC---EEEEecccceEEEEEecCCcCCCCccccchhhhcccc-ccccccCCccee--------
Q 014005           27 EELQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMD-FTSTSHPEYRYK--------   94 (432)
Q Consensus        27 ~~~~h~~~V~~~~fsp~g~---~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~--------   94 (432)
                      +.-+|++.|.+++|...+.   +||++|.|..||||.+.-.....       ..++.+. .+..-.|.....        
T Consensus       186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~-------~~~~e~~~t~~~~~~~f~~l~~i~~~is  258 (764)
T KOG1063|consen  186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDED-------SNEREDSLTTLSNLPVFMILEEIQYRIS  258 (764)
T ss_pred             EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcc-------ccccccccccccCCceeeeeeeEEEEEe
Confidence            3558999999999987654   78999999999999986543211       1111110 000111111111        


Q ss_pred             --eeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc--ce---eeeeecCCCCcccccccc
Q 014005           95 --TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ--KV---KKIKEMDHFPFVSSENTL  167 (432)
Q Consensus        95 --~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~---~~~~~~~~~~~~~~~~~~  167 (432)
                        ..+.||+            +.|+++.|  +|.+..|++++.|+++.+|.....  -.   .++..+.+..        
T Consensus       259 ~eall~GHe------------DWV~sv~W--~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a--------  316 (764)
T KOG1063|consen  259 FEALLMGHE------------DWVYSVWW--HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSA--------  316 (764)
T ss_pred             hhhhhcCcc------------cceEEEEE--ccchhhheecccCcceEEEecCCccceEEEEEEeecccccc--------
Confidence              2345888            99999999  889999999999999999998654  22   2333443333        


Q ss_pred             ccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 014005          168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  246 (432)
Q Consensus       168 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~  246 (432)
                         +......|++++..++.-+.  .|..++|.............. .+|.+.|..++|+|.|.++++. .|.+-|+|-.
T Consensus       317 ---~GF~g~lw~~n~~~ii~~g~--~Gg~hlWkt~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~  390 (764)
T KOG1063|consen  317 ---GGFWGGLWSPNSNVIIAHGR--TGGFHLWKTKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFAR  390 (764)
T ss_pred             ---cceeeEEEcCCCCEEEEecc--cCcEEEEeccCccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeecc
Confidence               67888999999998888888  889999984432233333344 8999999999999999999988 8888877533


Q ss_pred             C-------------------------------------------------------------------------------
Q 014005          247 E-------------------------------------------------------------------------------  247 (432)
Q Consensus       247 ~-------------------------------------------------------------------------------  247 (432)
                      -                                                                               
T Consensus       391 wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLS  470 (764)
T KOG1063|consen  391 WGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLS  470 (764)
T ss_pred             cccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccccc
Confidence            0                                                                               


Q ss_pred             ---------CCC-c---eeeEe--------ecCC--------------CCcCCCCcceEEEEEcCCCCcEEEEEeCCC--
Q 014005          248 ---------ISD-Q---CFNIV--------DMKP--------------SNMDDLTEVITSAEFHPIYCNLLAYSSSRG--  290 (432)
Q Consensus       248 ---------~~~-~---~~~~~--------~~~~--------------~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--  290 (432)
                               .++ .   +.++.        ..+|              ..+-+|...|.+++.+|++ +++|+++...  
T Consensus       471 nKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~  549 (764)
T KOG1063|consen  471 NKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLK  549 (764)
T ss_pred             CCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCc
Confidence                     000 0   00000        0000              1234788899999999999 9999988543  


Q ss_pred             ---eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec----C---cce
Q 014005          291 ---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY----E---PVM  359 (432)
Q Consensus       291 ---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~----~---~~~  359 (432)
                         .|++|+..+...    .+.+.+|             .-.|+.++|||||+||++. -|.++.+|..    .   ...
T Consensus       550 ehAvI~lw~t~~W~~----~~~L~~H-------------sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa  612 (764)
T KOG1063|consen  550 EHAVIRLWNTANWLQ----VQELEGH-------------SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFA  612 (764)
T ss_pred             cceEEEEEeccchhh----hheeccc-------------ceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhc
Confidence               699999988765    5778887             7899999999999999985 6699999998    1   122


Q ss_pred             eEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          360 TLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      ..+.|....|-.++.           ....+.+|+|.|..+.+|..
T Consensus       613 ~~k~HtRIIWdcsW~-----------pde~~FaTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  613 CLKAHTRIIWDCSWS-----------PDEKYFATASRDKKVKVWEE  647 (764)
T ss_pred             cccccceEEEEcccC-----------cccceeEEecCCceEEEEec
Confidence            244555443333332           12235899999999999994

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1e-22  Score=167.27  Aligned_cols=260  Identities=14%  Similarity=0.216  Sum_probs=186.0

Q ss_pred             hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005            6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS   85 (432)
Q Consensus         6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (432)
                      .=+...+.|.+... |.-.......|.++|.+++|+-+|..+++|+.|+.+++||+.+++.                   
T Consensus        47 SWD~tVR~wevq~~-g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-------------------  106 (347)
T KOG0647|consen   47 SWDGTVRIWEVQNS-GQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-------------------  106 (347)
T ss_pred             ccCCceEEEEEecC-CcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-------------------
Confidence            33455666777653 3333444567899999999999999999999999999999999864                   


Q ss_pred             cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005           86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN  165 (432)
Q Consensus        86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  165 (432)
                               .++..|.            ++|.++.|.+....+.|+||+.|++|+.||.+.........+.         
T Consensus       107 ---------~~v~~Hd------------~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP---------  156 (347)
T KOG0647|consen  107 ---------SQVAAHD------------APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP---------  156 (347)
T ss_pred             ---------eeeeecc------------cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc---------
Confidence                     4788898            9999999976555568999999999999999876633332222         


Q ss_pred             ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEE
Q 014005          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW  244 (432)
Q Consensus       166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lw  244 (432)
                           +.++++..-  ..+++.+..  +..|.+|++++..+..  +.......-.++|++..++....+.| -+|.+.+.
T Consensus       157 -----eRvYa~Dv~--~pm~vVata--~r~i~vynL~n~~te~--k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq  225 (347)
T KOG0647|consen  157 -----ERVYAADVL--YPMAVVATA--ERHIAVYNLENPPTEF--KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQ  225 (347)
T ss_pred             -----ceeeehhcc--CceeEEEec--CCcEEEEEcCCCcchh--hhhcCcccceeeEEEEEecCCceEeeeecceEEEE
Confidence                 334433332  233444444  8899999997542211  11113345578899998888888988 89999999


Q ss_pred             eCCCCCceeeEeecCCCC----cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc
Q 014005          245 NLEISDQCFNIVDMKPSN----MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK  320 (432)
Q Consensus       245 d~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~  320 (432)
                      .++.... ..-+..+...    ..+.--.|++++|+|.. ..|++++.||++.+||-.....    ++..+.|       
T Consensus       226 ~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~k----Lk~s~~~-------  292 (347)
T KOG0647|consen  226 YIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDARTK----LKTSETH-------  292 (347)
T ss_pred             ecCCCCc-cCceeEEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhhh----hhccCcC-------
Confidence            8883222 2222111111    01112368999999998 8999999999999999776554    5666665       


Q ss_pred             cceeeeecceeEEEEcCCCCEEEEe
Q 014005          321 SFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       321 ~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                            ..+|++.+|+.+|.++|-+
T Consensus       293 ------~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  293 ------PQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             ------CCccceeEecCCCCEEEEE
Confidence                  7899999999999998764

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.4e-23  Score=192.48  Aligned_cols=240  Identities=15%  Similarity=0.245  Sum_probs=178.5

Q ss_pred             EEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           35 VSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        35 V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      +..|.|+. ..++|||++..|.|.+||+....                        ..+.+..|..|+            
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~------------------------rnk~l~~f~EH~------------  133 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI------------------------RNKLLTVFNEHE------------  133 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccc------------------------cchhhhHhhhhc------------
Confidence            34456654 35789999999999999998721                        112335788898            


Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-ceecceeec
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~  192 (432)
                      ..++++.|+ +....+|++|+.||.|++||++..+......  ..           ...|+++.|+|... .++++..  
T Consensus       134 Rs~~~ldfh-~tep~iliSGSQDg~vK~~DlR~~~S~~t~~--~n-----------SESiRDV~fsp~~~~~F~s~~d--  197 (839)
T KOG0269|consen  134 RSANKLDFH-STEPNILISGSQDGTVKCWDLRSKKSKSTFR--SN-----------SESIRDVKFSPGYGNKFASIHD--  197 (839)
T ss_pred             cceeeeeec-cCCccEEEecCCCceEEEEeeeccccccccc--cc-----------chhhhceeeccCCCceEEEecC--
Confidence            999999996 3556789999999999999998776333222  22           27899999999854 4444555  


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (432)
                      +|.+++||++.  ..+|...+ .+|.+.+.|+.|+|++.+||+| .|+.|+|||+. ..+.....      .-....++.
T Consensus       198 sG~lqlWDlRq--p~r~~~k~-~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t-~~~~~~~~------tInTiapv~  267 (839)
T KOG0269|consen  198 SGYLQLWDLRQ--PDRCEKKL-TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT-DSRAKPKH------TINTIAPVG  267 (839)
T ss_pred             CceEEEeeccC--chhHHHHh-hcccCceEEEeecCCCceeeecCCCccEEEEecc-CCCcccee------EEeecceee
Confidence            88999999985  45666777 8999999999999999999999 99999999998 33221111      023346799


Q ss_pred             EEEEcCCCCcEEEEEe--CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC-CCCEEEEee-C
Q 014005          272 SAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-Y  347 (432)
Q Consensus       272 ~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~s~~-~  347 (432)
                      +++|-|....+||+++  .|-.|+|||++..-++   ..++..|             ...++.++|.. |...|.+++ |
T Consensus       268 rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP---~~t~~eH-------------~~~vt~i~W~~~d~~~l~s~sKD  331 (839)
T KOG0269|consen  268 RVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP---YATFLEH-------------TDSVTGIAWDSGDRINLWSCSKD  331 (839)
T ss_pred             eeeeccCccchhhhhhccccceEEEEeecccccc---ceeeecc-------------CccccceeccCCCceeeEeecCc
Confidence            9999999877888887  6779999999954443   5677776             88999999976 333444543 3


Q ss_pred             CeEEE
Q 014005          348 MNLKV  352 (432)
Q Consensus       348 ~~i~i  352 (432)
                      +++..
T Consensus       332 ~tv~q  336 (839)
T KOG0269|consen  332 GTVLQ  336 (839)
T ss_pred             cHHHH
Confidence            55443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=1.2e-22  Score=184.83  Aligned_cols=258  Identities=16%  Similarity=0.185  Sum_probs=198.2

Q ss_pred             cCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecC
Q 014005           21 GERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH  100 (432)
Q Consensus        21 ~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h  100 (432)
                      .+++......-.-.+.|++.+|+|++||+|..-|+++||++...+..                           ..+.+|
T Consensus       448 fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~---------------------------~~~eAH  500 (1080)
T KOG1408|consen  448 FDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT---------------------------CFMEAH  500 (1080)
T ss_pred             ccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhh---------------------------hheecc
Confidence            35666666667778999999999999999999999999999876533                           567889


Q ss_pred             CccccccchhhhhcceeEEEEEEcCC--CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccC
Q 014005          101 EPEFDYLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN  178 (432)
Q Consensus       101 ~~~~~~~~~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  178 (432)
                      +            ..|.|+.|+ .|+  .++|++++.|+.|.++|+...- ..+..+..|.           ..|+++.|
T Consensus       501 e------------sEilcLeyS-~p~~~~kLLASasrdRlIHV~Dv~rny-~l~qtld~HS-----------ssITsvKF  555 (1080)
T KOG1408|consen  501 E------------SEILCLEYS-FPVLTNKLLASASRDRLIHVYDVKRNY-DLVQTLDGHS-----------SSITSVKF  555 (1080)
T ss_pred             c------------ceeEEEeec-CchhhhHhhhhccCCceEEEEeccccc-chhhhhcccc-----------cceeEEEE
Confidence            8            999999995 232  4689999999999999997542 2334445555           78888888


Q ss_pred             CCCC--cceecceeeccceEEEEeecccccceeeEEe-ecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceee
Q 014005          179 PPSF--AHGYHLEWTENMATKIANVGNSVHARCQKVY-PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN  254 (432)
Q Consensus       179 ~~~~--~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~  254 (432)
                      ...+  ..+++++.  |..+.+-..+....+.....- ..-....++.+++.|+.++++++ .|..|+|||++ .++..+
T Consensus       556 a~~gln~~MiscGA--DksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~-sgKq~k  632 (1080)
T KOG1408|consen  556 ACNGLNRKMISCGA--DKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIE-SGKQVK  632 (1080)
T ss_pred             eecCCceEEEeccC--chhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecc-ccceee
Confidence            7766  34444443  555544333211111111100 01123568999999999999999 99999999999 677777


Q ss_pred             EeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEE
Q 014005          255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  334 (432)
Q Consensus       255 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~  334 (432)
                      .|    ..-.+|.+..-.+..+|.| .++|+...|+++.++|.-+|+.    +..+.+|             ...|+.+.
T Consensus       633 ~F----Kgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgEc----vA~m~GH-------------sE~VTG~k  690 (1080)
T KOG1408|consen  633 SF----KGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGEC----VAQMTGH-------------SEAVTGVK  690 (1080)
T ss_pred             ee----cccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccchh----hhhhcCc-------------chheeeee
Confidence            66    1225677788899999999 9999999999999999999986    6888897             88999999


Q ss_pred             EcCCCCEEEEe-eCCeEEEEec
Q 014005          335 FANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       335 ~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                      |.+|-+.|++. +||+|.+|.+
T Consensus       691 F~nDCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  691 FLNDCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             ecccchhheeecCCceEEEEEC
Confidence            99999999984 7799999999

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.90  E-value=1.3e-21  Score=158.18  Aligned_cols=212  Identities=13%  Similarity=0.186  Sum_probs=179.7

Q ss_pred             eeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccccc
Q 014005           96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (432)
Q Consensus        96 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  175 (432)
                      .++||+            .+++.+.|  +.+|.+|++++.|.++.+|-...|+  ++..+.+|.           +.|.+
T Consensus         5 ~l~GHE------------RplTqiKy--N~eGDLlFscaKD~~~~vw~s~nGe--rlGty~GHt-----------GavW~   57 (327)
T KOG0643|consen    5 LLQGHE------------RPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNGE--RLGTYDGHT-----------GAVWC   57 (327)
T ss_pred             ccccCc------------cccceEEe--cCCCcEEEEecCCCCceEEEecCCc--eeeeecCCC-----------ceEEE
Confidence            578898            99999999  8999999999999999999987777  777788888           99999


Q ss_pred             ccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-----CCeEEEEeCCCC
Q 014005          176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-----DLRINLWNLEIS  249 (432)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-----d~~i~lwd~~~~  249 (432)
                      +..+.+...+++|+.  |.++++||++   +++++..+  .-...|..+.|+++|++++.. +     .+.|.++|++..
T Consensus        58 ~Did~~s~~liTGSA--D~t~kLWDv~---tGk~la~~--k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~  130 (327)
T KOG0643|consen   58 CDIDWDSKHLITGSA--DQTAKLWDVE---TGKQLATW--KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDD  130 (327)
T ss_pred             EEecCCcceeeeccc--cceeEEEEcC---CCcEEEEe--ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCC
Confidence            999999999999998  9999999999   88888887  456789999999999988865 3     467899999832


Q ss_pred             C------ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005          250 D------QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (432)
Q Consensus       250 ~------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~  323 (432)
                      .      .++..+       ..+.+.++.+-|.|-+ ..|++|..||.|.+||+++|+..   +..-+.|          
T Consensus       131 ~~~~~s~ep~~kI-------~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~---v~s~~~h----------  189 (327)
T KOG0643|consen  131 SSDIDSEEPYLKI-------PTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKEL---VDSDEEH----------  189 (327)
T ss_pred             hhhhcccCceEEe-------cCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCcee---eechhhh----------
Confidence            2      223322       5667889999999999 99999999999999999998753   4555666          


Q ss_pred             eeeecceeEEEEcCCCCEEEEee-CCeEEEEec---CcceeEeecc
Q 014005          324 TEIIASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMTLSFCG  365 (432)
Q Consensus       324 ~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~  365 (432)
                         ...|+++++++|..++++++ |.+-++||+   ..++++....
T Consensus       190 ---~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~  232 (327)
T KOG0643|consen  190 ---SSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER  232 (327)
T ss_pred             ---ccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc
Confidence               78999999999999999985 499999999   5666665544

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.3e-21  Score=161.36  Aligned_cols=240  Identities=18%  Similarity=0.209  Sum_probs=173.7

Q ss_pred             CccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        26 ~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ...+.|..++.+++|.++ ..+++|+.||.|+.+|++++...                            .+..|.    
T Consensus        48 ~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~----------------------------~igth~----   94 (323)
T KOG1036|consen   48 KLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED----------------------------QIGTHD----   94 (323)
T ss_pred             hhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce----------------------------eeccCC----
Confidence            345789999999999874 46899999999999999998643                            677788    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (432)
                              ..|.+|.+  .+....+++|+.|++|++||.+.......  ..            ....|.++  +-.+..+
T Consensus        95 --------~~i~ci~~--~~~~~~vIsgsWD~~ik~wD~R~~~~~~~--~d------------~~kkVy~~--~v~g~~L  148 (323)
T KOG1036|consen   95 --------EGIRCIEY--SYEVGCVISGSWDKTIKFWDPRNKVVVGT--FD------------QGKKVYCM--DVSGNRL  148 (323)
T ss_pred             --------CceEEEEe--eccCCeEEEcccCccEEEEeccccccccc--cc------------cCceEEEE--eccCCEE
Confidence                    99999999  56677899999999999999986331111  10            11334433  3345667


Q ss_pred             ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC---ceeeEeecCCC
Q 014005          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD---QCFNIVDMKPS  261 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~---~~~~~~~~~~~  261 (432)
                      +.|+.  +..+.+||++......  +.....-...+.|++..|++.-++++ -||.|.+=.++...   .....|...+.
T Consensus       149 vVg~~--~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~  224 (323)
T KOG1036|consen  149 VVGTS--DRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRL  224 (323)
T ss_pred             EEeec--CceEEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeec
Confidence            77776  8899999998642222  22124556789999999988778877 89999886666221   11112211111


Q ss_pred             CcCC--CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC
Q 014005          262 NMDD--LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (432)
Q Consensus       262 ~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg  339 (432)
                      ...+  .--+|++++|||-. ..||||+.||.|.+||+...+.    ++.+..-             ...|.+++|+.||
T Consensus       225 ~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rKr----l~q~~~~-------------~~SI~slsfs~dG  286 (323)
T KOG1036|consen  225 SEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRKR----LKQLAKY-------------ETSISSLSFSMDG  286 (323)
T ss_pred             ccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchhh----hhhccCC-------------CCceEEEEeccCC
Confidence            1111  12379999999998 9999999999999999998765    4555552             4679999999999


Q ss_pred             CEEEEee
Q 014005          340 QHLLSRD  346 (432)
Q Consensus       340 ~~l~s~~  346 (432)
                      ..||.++
T Consensus       287 ~~LAia~  293 (323)
T KOG1036|consen  287 SLLAIAS  293 (323)
T ss_pred             CeEEEEe
Confidence            9999875

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=5.1e-22  Score=172.35  Aligned_cols=247  Identities=15%  Similarity=0.150  Sum_probs=190.1

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      .+.|.|++-+|+|.+|+.|+..|.|.+|.+.++.++                           ..+.+|-          
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL---------------------------~v~~aHY----------  123 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL---------------------------NVLSAHY----------  123 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHH---------------------------HHHHhhc----------
Confidence            678999999999999999989999999999999865                           5677888          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccC-------cceeeeeecCCCCccccccccccccccccccCCCC--C
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-------QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS--F  182 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~  182 (432)
                        ..|+++.|  +.||.+|+||+.||.|.+|++..       ...+.+..++.|.           -+|.++...+.  .
T Consensus       124 --Q~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht-----------lsITDl~ig~Gg~~  188 (476)
T KOG0646|consen  124 --QSITCLKF--SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT-----------LSITDLQIGSGGTN  188 (476)
T ss_pred             --cceeEEEE--eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc-----------ceeEEEEecCCCcc
Confidence              89999999  89999999999999999998742       2344555666666           67777766554  4


Q ss_pred             cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC-cee----eEe
Q 014005          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCF----NIV  256 (432)
Q Consensus       183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~-~~~----~~~  256 (432)
                      ..+++.+.  |.++++||+.   .+..+.++  .-+..+.+++.+|.++.+..| .+|.|.+.++.... +..    +..
T Consensus       189 ~rl~TaS~--D~t~k~wdlS---~g~LLlti--~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~  261 (476)
T KOG0646|consen  189 ARLYTASE--DRTIKLWDLS---LGVLLLTI--TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGR  261 (476)
T ss_pred             ceEEEecC--CceEEEEEec---cceeeEEE--ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccc
Confidence            56666666  9999999998   55666655  456789999999999999999 99999998876222 010    000


Q ss_pred             ---ecCCCCcCCCCc--ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeeccee
Q 014005          257 ---DMKPSNMDDLTE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (432)
Q Consensus       257 ---~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~  331 (432)
                         ..+...+.+|.+  .|+|++++-|| .+|++|+.||.|.|||+.+.+.    ++++..-             .++|+
T Consensus       262 ~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q~----iRtl~~~-------------kgpVt  323 (476)
T KOG0646|consen  262 HEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQC----IRTLQTS-------------KGPVT  323 (476)
T ss_pred             ccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHHH----HHHHhhh-------------ccccc
Confidence               001123467877  99999999999 9999999999999999998765    5666621             57899


Q ss_pred             EEEEcCCCCEEEEeeC--CeEEEEec
Q 014005          332 DIKFANDGQHLLSRDY--MNLKVFRY  355 (432)
Q Consensus       332 ~~~~s~dg~~l~s~~~--~~i~iwd~  355 (432)
                      .+.+.|--+-...+.+  ..+-.|++
T Consensus       324 nL~i~~~~~~~~l~~~~~ps~~~~~l  349 (476)
T KOG0646|consen  324 NLQINPLERGIILFEHKQPSLPNPHL  349 (476)
T ss_pred             eeEeeccccceecccccCccCCchHh
Confidence            9999775444433322  55566666

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.89  E-value=1.7e-22  Score=176.64  Aligned_cols=257  Identities=12%  Similarity=0.188  Sum_probs=203.5

Q ss_pred             cchhhhhhhhcCCCCCccc---cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccc
Q 014005           11 SLEWKCSQAFGERNPDEEL---QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTS   87 (432)
Q Consensus        11 ~~~w~~~~~~~~~~~~~~~---~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (432)
                      ...|.++|. +.+.....+   ...+.|.++...|||+-|++|+.-.++.|||+......                    
T Consensus       442 VKVWdis~p-g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr--------------------  500 (705)
T KOG0639|consen  442 VKVWDISQP-GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR--------------------  500 (705)
T ss_pred             EEEeeccCC-CCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc--------------------
Confidence            457888876 555544443   34678999999999999999999999999999775421                    


Q ss_pred             cCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccc
Q 014005           88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL  167 (432)
Q Consensus        88 ~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  167 (432)
                           ...++..-.            -..+.++.  +||.+..++++.||.|.|||+....  .+..+++|+        
T Consensus       501 -----ikaeltssa------------paCyALa~--spDakvcFsccsdGnI~vwDLhnq~--~VrqfqGht--------  551 (705)
T KOG0639|consen  501 -----IKAELTSSA------------PACYALAI--SPDAKVCFSCCSDGNIAVWDLHNQT--LVRQFQGHT--------  551 (705)
T ss_pred             -----hhhhcCCcc------------hhhhhhhc--CCccceeeeeccCCcEEEEEcccce--eeecccCCC--------
Confidence                 111222222            34667888  8999999999999999999998766  556677777        


Q ss_pred             ccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 014005          168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  246 (432)
Q Consensus       168 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~  246 (432)
                         ....++..++++..+.+|+.  |+.|+.||++   .++.+..  ..-.+.|.++..+|++.++++| .++.+.+...
T Consensus       552 ---DGascIdis~dGtklWTGGl--DntvRcWDlr---egrqlqq--hdF~SQIfSLg~cP~~dWlavGMens~vevlh~  621 (705)
T KOG0639|consen  552 ---DGASCIDISKDGTKLWTGGL--DNTVRCWDLR---EGRQLQQ--HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT  621 (705)
T ss_pred             ---CCceeEEecCCCceeecCCC--ccceeehhhh---hhhhhhh--hhhhhhheecccCCCccceeeecccCcEEEEec
Confidence               89999999999999999999  9999999998   4433332  2446789999999999999999 9999998888


Q ss_pred             CCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeee
Q 014005          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (432)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  326 (432)
                      .. .+...        +.-|.+.|.++.|.+.| +++++.+.|+-+..|.+.-|.      ..|+. ++           
T Consensus       622 sk-p~kyq--------lhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGa------siFqs-kE-----------  673 (705)
T KOG0639|consen  622 SK-PEKYQ--------LHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGA------SIFQS-KE-----------  673 (705)
T ss_pred             CC-cccee--------ecccccEEEEEEecccC-ceeeecCchhhhhhccCcccc------ceeec-cc-----------
Confidence            72 22222        26789999999999999 999999999999999988775      33433 11           


Q ss_pred             ecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005          327 IASISDIKFANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       327 ~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~  355 (432)
                      ..+|.++..|.|.+||++|+ +....+|.+
T Consensus       674 ~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  674 SSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            57899999999999999984 467777654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.6e-20  Score=170.14  Aligned_cols=247  Identities=15%  Similarity=0.183  Sum_probs=195.1

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ..+|.|++|+.+.+.||.+-.||.|.||++..+                          +-+...+.+++          
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~--------------------------w~~~~vi~g~~----------   68 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN--------------------------WFLEPVIHGPE----------   68 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCC--------------------------ceeeEEEecCC----------
Confidence            568999999999999999999999999999874                          34456777776          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                       +..|.+++|  . ++..|++.+.+|.|.-||+.+.+.+.  .+....           +.|-+++.+|.+..+..|+. 
T Consensus        69 -drsIE~L~W--~-e~~RLFS~g~sg~i~EwDl~~lk~~~--~~d~~g-----------g~IWsiai~p~~~~l~Igcd-  130 (691)
T KOG2048|consen   69 -DRSIESLAW--A-EGGRLFSSGLSGSITEWDLHTLKQKY--NIDSNG-----------GAIWSIAINPENTILAIGCD-  130 (691)
T ss_pred             -CCceeeEEE--c-cCCeEEeecCCceEEEEecccCceeE--EecCCC-----------cceeEEEeCCccceEEeecC-
Confidence             278999999  4 46688899999999999999887443  343333           78999999999999999988 


Q ss_pred             ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC-CCcc
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEV  269 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~-~~~~  269 (432)
                       ||.+...+...+ .-.-.+.+ ...++++.+++|+|++..+++| .||.|++||.. .+..+.+...+...+.. ..--
T Consensus       131 -dGvl~~~s~~p~-~I~~~r~l-~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~-~~~t~~~~~~~~d~l~k~~~~i  206 (691)
T KOG2048|consen  131 -DGVLYDFSIGPD-KITYKRSL-MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK-SGQTLHIITMQLDRLSKREPTI  206 (691)
T ss_pred             -CceEEEEecCCc-eEEEEeec-ccccceEEEEEecCCccEEEecccCceEEEEEcC-CCceEEEeeecccccccCCceE
Confidence             886666665522 22223344 4567899999999999999999 99999999999 55555554333333333 3446


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCC
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYM  348 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~  348 (432)
                      |+++.|-.++  .|++|...|.|.+||...+.+    ++.+..|             .+.|.+++.++++.++.++ -|+
T Consensus       207 VWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTL----iqS~~~h-------------~adVl~Lav~~~~d~vfsaGvd~  267 (691)
T KOG2048|consen  207 VWSVLFLRDS--TIASGDSAGTVTFWDSIFGTL----IQSHSCH-------------DADVLALAVADNEDRVFSAGVDP  267 (691)
T ss_pred             EEEEEEeecC--cEEEecCCceEEEEcccCcch----hhhhhhh-------------hcceeEEEEcCCCCeEEEccCCC
Confidence            8899998764  799999999999999999887    6888886             8899999999998888775 568


Q ss_pred             eEEEEec
Q 014005          349 NLKVFRY  355 (432)
Q Consensus       349 ~i~iwd~  355 (432)
                      .|..+..
T Consensus       268 ~ii~~~~  274 (691)
T KOG2048|consen  268 KIIQYSL  274 (691)
T ss_pred             ceEEEEe
Confidence            8777777

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=2.2e-21  Score=164.01  Aligned_cols=228  Identities=18%  Similarity=0.219  Sum_probs=171.4

Q ss_pred             CccccCCCcEEEEEEcCCC--CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005           26 DEELQDVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (432)
Q Consensus        26 ~~~~~h~~~V~~~~fsp~g--~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~  103 (432)
                      .+.+.|.+.++.+.-++-|  .+.|+=+..|.|.||++.....         .+......+  ..-..+++.++.+|.  
T Consensus       145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~---------~l~~~~~~~--~~s~~~Pl~t~~ghk--  211 (440)
T KOG0302|consen  145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN---------ALSEPGLEV--KDSEFRPLFTFNGHK--  211 (440)
T ss_pred             ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhh---------hhcCccccc--cccccCceEEecccC--
Confidence            4456778888888887765  4566777889999999865321         111111000  001456778889998  


Q ss_pred             ccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeee-eecCCCCccccccccccccccccccCCCCC
Q 014005          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (432)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  182 (432)
                                ..=+.|.|+|...| .|++|..-+.|++|...++..+.- ..+..|.           ..|.+++|+|..
T Consensus       212 ----------~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~-----------~SVEDLqWSptE  269 (440)
T KOG0302|consen  212 ----------GEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHT-----------KSVEDLQWSPTE  269 (440)
T ss_pred             ----------ccceeeeccccccc-ccccCccccceEeeeeccCceeecCccccccc-----------cchhhhccCCcc
Confidence                      77889999553344 588998889999999988764321 1122244           789999999985


Q ss_pred             c-ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCC--CceeeEeec
Q 014005          183 A-HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--DQCFNIVDM  258 (432)
Q Consensus       183 ~-~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~--~~~~~~~~~  258 (432)
                      . .+++++.  |+.|+|||++......++.+  +.|.+.|+.|.|+..-.+||+| +||+++|||++.-  ++++..+  
T Consensus       270 ~~vfaScS~--DgsIrIWDiRs~~~~~~~~~--kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f--  343 (440)
T KOG0302|consen  270 DGVFASCSC--DGSIRIWDIRSGPKKAAVST--KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF--  343 (440)
T ss_pred             CceEEeeec--CceEEEEEecCCCccceeEe--eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE--
Confidence            5 5566666  99999999997655566655  7899999999999998899999 9999999999832  2344444  


Q ss_pred             CCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (432)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~  299 (432)
                           .-|..+|+++.|+|.....|++++.|.+|.|||+.-
T Consensus       344 -----k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  344 -----KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             -----EeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence                 889999999999998778999999999999999874

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=3.4e-22  Score=178.39  Aligned_cols=285  Identities=16%  Similarity=0.237  Sum_probs=201.5

Q ss_pred             hcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc-ccccC---------
Q 014005           20 FGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT-STSHP---------   89 (432)
Q Consensus        20 ~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p---------   89 (432)
                      |-......-..|++.|.||+.+|.|.+||+|+.||++|||.+.++..+.       ......... ++|.|         
T Consensus       388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr-------~~~~d~~I~~vaw~P~~~~~vLAv  460 (733)
T KOG0650|consen  388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVR-------TVQFDSEIRSVAWNPLSDLCVLAV  460 (733)
T ss_pred             CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEE-------EEeecceeEEEEecCCCCceeEEE
Confidence            3334444455899999999999999999999999999999999987542       111111000 22222         


Q ss_pred             ---------------------CcceeeeeecCCccc------ccc------------chhhhhcceeEEEEEEcCCCCEE
Q 014005           90 ---------------------EYRYKTEFQSHEPEF------DYL------------KSLEIEEKINRVRWCAAPNGSMF  130 (432)
Q Consensus        90 ---------------------~~~~~~~~~~h~~~~------~~~------------~~~~~~~~v~~l~~~~s~~~~~l  130 (432)
                                           ....+....  +..+      .|.            -.+.+...|..+.|  +..|.||
T Consensus       461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~--~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW--HrkGDYl  536 (733)
T KOG0650|consen  461 AVGECVLIVNPIFGDRLEVGPTKELLASAP--NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTW--HRKGDYL  536 (733)
T ss_pred             EecCceEEeCccccchhhhcchhhhhhcCC--CccCCcccceeechhhhhhhccceEEEEecCCccceeee--ecCCceE
Confidence                                 000000000  0000      011            11234578999999  8999999


Q ss_pred             EEEeC---CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccc
Q 014005          131 ILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA  207 (432)
Q Consensus       131 ~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~  207 (432)
                      ++...   ...|.|.++.....+.  .+...           .+.+.++.|+|...++..++   ...|++||+.   ..
T Consensus       537 atV~~~~~~~~VliHQLSK~~sQ~--PF~ks-----------kG~vq~v~FHPs~p~lfVaT---q~~vRiYdL~---kq  597 (733)
T KOG0650|consen  537 ATVMPDSGNKSVLIHQLSKRKSQS--PFRKS-----------KGLVQRVKFHPSKPYLFVAT---QRSVRIYDLS---KQ  597 (733)
T ss_pred             EEeccCCCcceEEEEecccccccC--chhhc-----------CCceeEEEecCCCceEEEEe---ccceEEEehh---HH
Confidence            99754   4678999987665332  12112           27789999999999988877   4789999997   44


Q ss_pred             eeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEE
Q 014005          208 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS  286 (432)
Q Consensus       208 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  286 (432)
                      ..++.+ ......|..++++|.|..|+.| .|+.+..+|++...+..+.+       .-|...+++++||+.- .+|++|
T Consensus       598 elvKkL-~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~l-------r~H~~avr~Va~H~ry-PLfas~  668 (733)
T KOG0650|consen  598 ELVKKL-LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTL-------RLHEKAVRSVAFHKRY-PLFASG  668 (733)
T ss_pred             HHHHHH-hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHh-------hhhhhhhhhhhhcccc-ceeeee
Confidence            444444 3455689999999999999999 99999999999776777654       7899999999999998 999999


Q ss_pred             eCCCeEEEEE------ccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEE
Q 014005          287 SSRGFVRLVD------MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVF  353 (432)
Q Consensus       287 ~~dg~i~iwd------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iw  353 (432)
                      +.||++.|+-      +....+ ...++.+.+|.-.         ....|.+..|+|.-.+|.++ .+|+|++|
T Consensus       669 sdDgtv~Vfhg~VY~Dl~qnpl-iVPlK~L~gH~~~---------~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  669 SDDGTVIVFHGMVYNDLLQNPL-IVPLKRLRGHEKT---------NDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cCCCcEEEEeeeeehhhhcCCc-eEeeeeccCceee---------cccceEeecccCCCceEEecCCCceEEee
Confidence            9999999884      322221 2236778887110         12358899999999999985 56999998

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=3.1e-21  Score=167.07  Aligned_cols=300  Identities=15%  Similarity=0.125  Sum_probs=203.7

Q ss_pred             cCCCcEEEEEEcCCCC--EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           30 QDVDIVSAIEFDKTGD--YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~--~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      -+...|++++|+|...  ++|+|+..|+|-+||+.+.+..                       +.-+..+..|.      
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d-----------------------~d~v~~f~~hs------  234 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD-----------------------KDGVYLFTPHS------  234 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc-----------------------cCceEEeccCC------
Confidence            3577899999999764  7899999999999999643321                       22334567788      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                            .+|.+|.|.| .+...+++.+.||+|++-|+++.....+.......           ..+..+.|+.....++.
T Consensus       235 ------~~Vs~l~F~P-~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~-----------~~fs~~d~~~e~~~vl~  296 (498)
T KOG4328|consen  235 ------GPVSGLKFSP-ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDN-----------IWFSSLDFSAESRSVLF  296 (498)
T ss_pred             ------ccccceEecC-CChhheeeeccCceeeeeeecchhhHHHhhcCccc-----------eeeeeccccCCCccEEE
Confidence                  9999999955 24457899999999999999988755554443222           56777888888887777


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceee-EeecCCCCcC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFN-IVDMKPSNMD  264 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~-~~~~~~~~~~  264 (432)
                      +..  -|...+||++...+  ....+ .-|...|.+++++|-.. +++++ -|++.+|||++.-...-. .+     ...
T Consensus       297 ~~~--~G~f~~iD~R~~~s--~~~~~-~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~l-----st~  366 (498)
T KOG4328|consen  297 GDN--VGNFNVIDLRTDGS--EYENL-RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFL-----STL  366 (498)
T ss_pred             eec--ccceEEEEeecCCc--cchhh-hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcce-----ecc
Confidence            776  56889999985422  12222 45777999999999755 46677 899999999984322111 11     336


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc--ccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  342 (432)
                      .|...|.++.|||++ -.|++.+.|+.|+|||..  +...+  ....+. |.....       .=-......|.||-.++
T Consensus       367 ~HrrsV~sAyFSPs~-gtl~TT~~D~~IRv~dss~~sa~~~--p~~~I~-Hn~~t~-------RwlT~fKA~W~P~~~li  435 (498)
T KOG4328|consen  367 PHRRSVNSAYFSPSG-GTLLTTCQDNEIRVFDSSCISAKDE--PLGTIP-HNNRTG-------RWLTPFKAAWDPDYNLI  435 (498)
T ss_pred             cccceeeeeEEcCCC-CceEeeccCCceEEeecccccccCC--ccceee-ccCccc-------ccccchhheeCCCccEE
Confidence            899999999999999 459999999999999974  11111  012222 211000       00123467899999999


Q ss_pred             EEeeC-CeEEEEecCcce-eEeecceeeeehhhhhcccccccccce--eeEEEEeecccceeeeecc
Q 014005          343 LSRDY-MNLKVFRYEPVM-TLSFCGIYVWILRQLQHSRFMSIYALS--CVIYIITTLYLINLSALSA  405 (432)
Q Consensus       343 ~s~~~-~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~i~~~~~  405 (432)
                      +.|.. ..|-|+|-+.-+ ....|.+        ....++......  ....++.|++.|.|+||-.
T Consensus       436 ~vg~~~r~IDv~~~~~~q~v~el~~P--------~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  436 VVGRYPRPIDVFDGNGGQMVCELHDP--------ESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             EEeccCcceeEEcCCCCEEeeeccCc--------cccccccceeecccccceeccCCccceEEEEec
Confidence            99988 899999982222 3344443        122222221111  1224677778899998874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=4.1e-20  Score=166.38  Aligned_cols=253  Identities=9%  Similarity=0.063  Sum_probs=171.7

Q ss_pred             ccCCCcEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      +.+...+.+++|+|+|+.+ ++++.++.|++||..+++..                           ..+..+.      
T Consensus        27 ~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~~------   73 (300)
T TIGR03866        27 FPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI---------------------------GTLPSGP------   73 (300)
T ss_pred             EECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE---------------------------EeccCCC------
Confidence            3334457789999999976 56778899999999876532                           2333332      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                             .+..+.|  +|+++.++++ +.++.+++||+.+++.......  .            ..+..++++|++.+++
T Consensus        74 -------~~~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--~------------~~~~~~~~~~dg~~l~  130 (300)
T TIGR03866        74 -------DPELFAL--HPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--G------------VEPEGMAVSPDGKIVV  130 (300)
T ss_pred             -------CccEEEE--CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--C------------CCcceEEECCCCCEEE
Confidence                   3456788  8899877655 5689999999987653222111  1            2356789999999988


Q ss_pred             cceeeccc-eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005          187 HLEWTENM-ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNM  263 (432)
Q Consensus       187 ~~~~~~~~-~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (432)
                      .+..  ++ .+.+||..   ........  .....+.+++|+|+++.++++  .++.+++||++ +++....+.......
T Consensus       131 ~~~~--~~~~~~~~d~~---~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~-~~~~~~~~~~~~~~~  202 (300)
T TIGR03866       131 NTSE--TTNMAHFIDTK---TYEIVDNV--LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVA-TRKVIKKITFEIPGV  202 (300)
T ss_pred             EEec--CCCeEEEEeCC---CCeEEEEE--EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcC-cceeeeeeeeccccc
Confidence            7765  43 56677876   44444433  123356789999999988644  69999999999 555555442211110


Q ss_pred             CCCCcceEEEEEcCCCCcEE-EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005          264 DDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  342 (432)
                      .........++|+|++ +.+ ++.+.++.+.+||+++++.    ...+..              ...+.+++|+|+|++|
T Consensus       203 ~~~~~~~~~i~~s~dg-~~~~~~~~~~~~i~v~d~~~~~~----~~~~~~--------------~~~~~~~~~~~~g~~l  263 (300)
T TIGR03866       203 HPEAVQPVGIKLTKDG-KTAFVALGPANRVAVVDAKTYEV----LDYLLV--------------GQRVWQLAFTPDEKYL  263 (300)
T ss_pred             ccccCCccceEECCCC-CEEEEEcCCCCeEEEEECCCCcE----EEEEEe--------------CCCcceEEECCCCCEE
Confidence            1111224568899999 654 4445677899999988765    333322              3568899999999999


Q ss_pred             EEe-e-CCeEEEEec---CcceeEeec
Q 014005          343 LSR-D-YMNLKVFRY---EPVMTLSFC  364 (432)
Q Consensus       343 ~s~-~-~~~i~iwd~---~~~~~~~~~  364 (432)
                      +++ . ++.|++||+   +++..++..
T Consensus       264 ~~~~~~~~~i~v~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       264 LTTNGVSNDVSVIDVAALKVIKSIKVG  290 (300)
T ss_pred             EEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence            875 3 499999999   566666654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.88  E-value=3.8e-21  Score=174.56  Aligned_cols=231  Identities=15%  Similarity=0.230  Sum_probs=188.9

Q ss_pred             cCCCcEEE-EEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           30 QDVDIVSA-IEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        30 ~h~~~V~~-~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      +|.+-|.+ ++|.+ ++-.|++|+.|.+|.+|...+...                           ..++.+|+      
T Consensus        55 ~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P---------------------------~~~LkgH~------  101 (745)
T KOG0301|consen   55 GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEP---------------------------LYTLKGHK------  101 (745)
T ss_pred             cCcceeeccceeccccCcceEeecccceEEEEecCCCCc---------------------------hhhhhccc------
Confidence            36677777 88875 444699999999999999988763                           47899999      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                            ..|.+++.  ..++. +++||.|.++++|....-.    .....|+           ..|-.++.-|.. .+++
T Consensus       102 ------snVC~ls~--~~~~~-~iSgSWD~TakvW~~~~l~----~~l~gH~-----------asVWAv~~l~e~-~~vT  156 (745)
T KOG0301|consen  102 ------SNVCSLSI--GEDGT-LISGSWDSTAKVWRIGELV----YSLQGHT-----------ASVWAVASLPEN-TYVT  156 (745)
T ss_pred             ------cceeeeec--CCcCc-eEecccccceEEecchhhh----cccCCcc-----------hheeeeeecCCC-cEEe
Confidence                  99999997  56665 9999999999999875432    1255555           778888888887 6677


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      |+.  |.+|++|.-     ++++++| .+|.+.|+.+++-+++.++-++.||.|++|++.  +.++...       .+|+
T Consensus       157 gsa--DKtIklWk~-----~~~l~tf-~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~--ge~l~~~-------~ght  219 (745)
T KOG0301|consen  157 GSA--DKTIKLWKG-----GTLLKTF-SGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD--GEVLLEM-------HGHT  219 (745)
T ss_pred             ccC--cceeeeccC-----Cchhhhh-ccchhheeeeEEecCCCeEeecCCceEEEEecc--Cceeeee-------eccc
Confidence            777  999999985     4788888 899999999999998766555599999999997  6677655       8999


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~  347 (432)
                      +.|.++...+++ ..++++++|++++||+..   .|   .+.+.- |            .-.|+++++-++|..++.|+|
T Consensus       220 n~vYsis~~~~~-~~Ivs~gEDrtlriW~~~---e~---~q~I~l-P------------ttsiWsa~~L~NgDIvvg~SD  279 (745)
T KOG0301|consen  220 NFVYSISMALSD-GLIVSTGEDRTLRIWKKD---EC---VQVITL-P------------TTSIWSAKVLLNGDIVVGGSD  279 (745)
T ss_pred             eEEEEEEecCCC-CeEEEecCCceEEEeecC---ce---EEEEec-C------------ccceEEEEEeeCCCEEEeccC
Confidence            999999977776 899999999999999976   23   344443 1            358999999999999988999


Q ss_pred             CeEEEEec
Q 014005          348 MNLKVFRY  355 (432)
Q Consensus       348 ~~i~iwd~  355 (432)
                      |.||||..
T Consensus       280 G~VrVfT~  287 (745)
T KOG0301|consen  280 GRVRVFTV  287 (745)
T ss_pred             ceEEEEEe
Confidence            99999988

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.1e-21  Score=156.53  Aligned_cols=217  Identities=15%  Similarity=0.180  Sum_probs=168.8

Q ss_pred             CCCccccCCCcEEEEEEcC--CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCC
Q 014005           24 NPDEELQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE  101 (432)
Q Consensus        24 ~~~~~~~h~~~V~~~~fsp--~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~  101 (432)
                      ...++..|+++|+.++|..  .|.+||+++.||.|.||.-+++.                         +.....+..|+
T Consensus        48 ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~-------------------------w~k~~e~~~h~  102 (299)
T KOG1332|consen   48 LLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR-------------------------WTKAYEHAAHS  102 (299)
T ss_pred             eeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc-------------------------hhhhhhhhhhc
Confidence            3455678999999999976  79999999999999999988874                         22335667788


Q ss_pred             ccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc-ceeeeeecCCCCccccccccccccccccccCCC
Q 014005          102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  180 (432)
Q Consensus       102 ~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  180 (432)
                                  ..|++++|.|+.-|-.|++++.||.|.+.+.... ........+.|+           -.+.++.|.|
T Consensus       103 ------------~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~-----------~GvnsVswap  159 (299)
T KOG1332|consen  103 ------------ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE-----------IGVNSVSWAP  159 (299)
T ss_pred             ------------ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc-----------cccceeeecC
Confidence                        9999999988878889999999999999998755 333333334444           5677778877


Q ss_pred             C---C-----------cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC----CEEEEE-cCCeE
Q 014005          181 S---F-----------AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC----ETFVSA-DDLRI  241 (432)
Q Consensus       181 ~---~-----------~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~-~d~~i  241 (432)
                      .   +           +.+++|+.  |+.|+||+.... .....+++ .+|.+.++.++|.|.-    .+++++ .||++
T Consensus       160 a~~~g~~~~~~~~~~~krlvSgGc--Dn~VkiW~~~~~-~w~~e~~l-~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v  235 (299)
T KOG1332|consen  160 ASAPGSLVDQGPAAKVKRLVSGGC--DNLVKIWKFDSD-SWKLERTL-EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV  235 (299)
T ss_pred             cCCCccccccCcccccceeeccCC--ccceeeeecCCc-chhhhhhh-hhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence            6   2           34777777  999999999864 44445556 8999999999999964    468888 99999


Q ss_pred             EEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005          242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  298 (432)
Q Consensus       242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~  298 (432)
                      .||..+......+.     .-+......+..+.|++.| ++|+.++.|+.|.+|.-.
T Consensus       236 iIwt~~~e~e~wk~-----tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  236 IIWTKDEEYEPWKK-----TLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             EEEEecCccCcccc-----cccccCCcceEEEEEeccc-cEEEEecCCcEEEEEEeC
Confidence            99988732222211     1124456779999999999 999999999999999754

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=1.2e-22  Score=185.00  Aligned_cols=201  Identities=13%  Similarity=0.217  Sum_probs=174.8

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      ..|.++..  -..++.+++|+.|..+-+|.+....  .+..+..|.           ++|.++.|+.....++.|..  +
T Consensus        29 aav~~lk~--~~s~r~~~~Gg~~~k~~L~~i~kp~--~i~S~~~he-----------spIeSl~f~~~E~Llaagsa--s   91 (825)
T KOG0267|consen   29 AAVGCLKI--RKSSRSLVTGGEDEKVNLWAIGKPN--AITSLTGHE-----------SPIESLTFDTSERLLAAGSA--S   91 (825)
T ss_pred             hhhceeee--eccceeeccCCCceeeccccccCCc--hhheeeccC-----------CcceeeecCcchhhhccccc--C
Confidence            77777777  5678899999999999999886544  222355555           89999999999999999998  9


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (432)
                      |.|++||++   .++.++++ .+|...+.++.|+|-+.+++.| .|+.+++||++ ...|..++       .+|...+..
T Consensus        92 gtiK~wDle---eAk~vrtL-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R-k~Gc~~~~-------~s~~~vv~~  159 (825)
T KOG0267|consen   92 GTIKVWDLE---EAKIVRTL-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR-KKGCSHTY-------KSHTRVVDV  159 (825)
T ss_pred             Cceeeeehh---hhhhhhhh-hccccCcceeeeccceEEeccccccccceehhhh-ccCceeee-------cCCcceeEE
Confidence            999999999   88888888 8999999999999999999999 99999999999 45577766       789999999


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEE
Q 014005          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLK  351 (432)
Q Consensus       273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~  351 (432)
                      ++|+|+| ++++.|+.|..++|||++.|++    ...|..|             .+.+..+.|+|..-++++| .|++++
T Consensus       160 l~lsP~G-r~v~~g~ed~tvki~d~~agk~----~~ef~~~-------------e~~v~sle~hp~e~Lla~Gs~d~tv~  221 (825)
T KOG0267|consen  160 LRLSPDG-RWVASGGEDNTVKIWDLTAGKL----SKEFKSH-------------EGKVQSLEFHPLEVLLAPGSSDRTVR  221 (825)
T ss_pred             EeecCCC-ceeeccCCcceeeeeccccccc----ccccccc-------------cccccccccCchhhhhccCCCCceee
Confidence            9999999 9999999999999999999987    6889987             8899999999998888887 559999


Q ss_pred             EEecCcceeE
Q 014005          352 VFRYEPVMTL  361 (432)
Q Consensus       352 iwd~~~~~~~  361 (432)
                      +||++....+
T Consensus       222 f~dletfe~I  231 (825)
T KOG0267|consen  222 FWDLETFEVI  231 (825)
T ss_pred             eeccceeEEe
Confidence            9999433333

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=1.1e-20  Score=169.94  Aligned_cols=315  Identities=18%  Similarity=0.139  Sum_probs=204.8

Q ss_pred             EEEEcCC---CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           37 AIEFDKT---GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        37 ~~~fsp~---g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      +..|++.   ...||.+..||.|.++|......                     .++...+..+..|.            
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f---------------------r~ee~~lk~~~aH~------------  100 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVF---------------------RLEERQLKKPLAHK------------  100 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhc---------------------chhhhhhccccccc------------
Confidence            3677653   35789999999999999876431                     11222335567788            


Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-ceecceeec
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~  192 (432)
                      ..|.++.|  .|....|++++.|.++++||+++..+.......+|.           +.+.+++|.+... .+.+|+.  
T Consensus       101 nAifDl~w--apge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~-----------~SvkS~cf~~~n~~vF~tGgR--  165 (720)
T KOG0321|consen  101 NAIFDLKW--APGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT-----------GSVKSECFMPTNPAVFCTGGR--  165 (720)
T ss_pred             ceeEeecc--CCCceeEEEccCCceeeeeeeccceeecceeecccc-----------cccchhhhccCCCcceeeccC--
Confidence            89999999  676678999999999999999988865554455566           8999999998754 5677888  


Q ss_pred             cceEEEEeeccccc---------------c--eeeEEe------ecCCCCCeeE---EEeCCCCCEEEEE--cCCeEEEE
Q 014005          193 NMATKIANVGNSVH---------------A--RCQKVY------PHAHDFNINS---ISNNSDCETFVSA--DDLRINLW  244 (432)
Q Consensus       193 ~~~v~i~d~~~~~~---------------~--~~~~~~------~~~~~~~i~~---~~~~~~~~~l~~~--~d~~i~lw  244 (432)
                      ||.+.|||++....               .  ++.+..      ...+...|.+   +.+..|...||++  .|+.|++|
T Consensus       166 Dg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVW  245 (720)
T KOG0321|consen  166 DGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVW  245 (720)
T ss_pred             CCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEE
Confidence            99999999874320               0  000000      0223344554   5555677888877  59999999


Q ss_pred             eCCCCCceeeEeecCCCCcCCC---CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcc
Q 014005          245 NLEISDQCFNIVDMKPSNMDDL---TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS  321 (432)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~  321 (432)
                      |++......+.-......+..|   .-.+.++..+..| .+|.+.+.|+.|++||+++-..-  .+..+.+|..+     
T Consensus       246 DLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~s--P~~~~sg~~~~-----  317 (720)
T KOG0321|consen  246 DLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSIS--PVAEFSGKLNS-----  317 (720)
T ss_pred             eecccccccccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcC--chhhccCcccc-----
Confidence            9994333222211111122333   3467888888888 55555556999999999964431  13444443110     


Q ss_pred             ceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec----CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecc
Q 014005          322 FFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLY  396 (432)
Q Consensus       322 ~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  396 (432)
                           ...+ .-..+||+.+|++| .+...++|.+    .+...+..|..          ...+..+..+....++|.+.
T Consensus       318 -----sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~----------eVt~V~w~pS~~t~v~TcSd  381 (720)
T KOG0321|consen  318 -----SFYV-KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTR----------EVTTVRWLPSATTPVATCSD  381 (720)
T ss_pred             -----eeee-eeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcce----------EEEEEeeccccCCCceeecc
Confidence                 1122 23468999999998 5599999999    34444555542          12222222223335888899


Q ss_pred             cceeeeeccC--CeeeecCCCceEEecCC
Q 014005          397 LINLSALSAG--MDSILQPDPIAIFYVSS  423 (432)
Q Consensus       397 ~~~i~~~~~~--~~~~~~~~~~~~~~~~~  423 (432)
                      |..+.+|+..  +.-..-+|+..+.+..+
T Consensus       382 D~~~kiW~l~~~l~e~~~adk~s~v~~~~  410 (720)
T KOG0321|consen  382 DFRVKIWRLSNGLEEIYAADKDSIVYEYS  410 (720)
T ss_pred             CcceEEEeccCchhhccccccchhhhhhh
Confidence            9999999944  44444566666665443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=6.5e-21  Score=164.53  Aligned_cols=258  Identities=14%  Similarity=0.171  Sum_probs=181.5

Q ss_pred             EEEEEEcC-------CCCEEEEecccceEEEEEecCCcCCCC---ccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005           35 VSAIEFDK-------TGDYLAVGDRGGRVILFETVGGKNTPN---QHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (432)
Q Consensus        35 V~~~~fsp-------~g~~l~t~~~dg~i~iw~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~  104 (432)
                      -.|++|..       .|+|+|.|..|..|.|||++-...+.+   .+.-.......         ..+.-..-++|+   
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k---------~~k~~~~~~gHT---  243 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKK---------KGKRSNSASGHT---  243 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhh---------hcccccccccch---
Confidence            35666543       367999999999999999875432210   00000000000         000011245677   


Q ss_pred             cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC-Cc
Q 014005          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS-FA  183 (432)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~  183 (432)
                               ..|..++|+- ...+.||+|+.|.+|++||+.++++.....+.  .           +.|.++.|+|. ..
T Consensus       244 ---------davl~Ls~n~-~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~--~-----------k~Vq~l~wh~~~p~  300 (463)
T KOG0270|consen  244 ---------DAVLALSWNR-NFRNVLASGSADKTVKLWDVDTGKPKSSITHH--G-----------KKVQTLEWHPYEPS  300 (463)
T ss_pred             ---------HHHHHHHhcc-ccceeEEecCCCceEEEEEcCCCCcceehhhc--C-----------CceeEEEecCCCce
Confidence                     8889999942 33568999999999999999999977665533  2           77999999887 56


Q ss_pred             ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCE-EEEE-cCCeEEEEeCCCCCceeeEeecCCC
Q 014005          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~  261 (432)
                      ++++|+.  |++|.+.|.+.........    .-.+.|-.++|+|.... ++++ +||+++-+|+|..++++.++     
T Consensus       301 ~LLsGs~--D~~V~l~D~R~~~~s~~~w----k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~-----  369 (463)
T KOG0270|consen  301 VLLSGSY--DGTVALKDCRDPSNSGKEW----KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL-----  369 (463)
T ss_pred             EEEeccc--cceEEeeeccCccccCceE----EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE-----
Confidence            8888999  9999999998421211112    23568899999997554 5566 99999999999888888876     


Q ss_pred             CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (432)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~  341 (432)
                        ..|.+.|.++++++.-+.++++++.|+.|++|++.....     +....|..          .-+...+.++.|+-.+
T Consensus       370 --~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-----~~v~~~~~----------~~~rl~c~~~~~~~a~  432 (463)
T KOG0270|consen  370 --KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-----KSVKEHSF----------KLGRLHCFALDPDVAF  432 (463)
T ss_pred             --EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-----cccccccc----------cccceeecccCCCcce
Confidence              899999999999998889999999999999999875442     22222210          0234667777787544


Q ss_pred             -EEEeeC-CeEEEEec
Q 014005          342 -LLSRDY-MNLKVFRY  355 (432)
Q Consensus       342 -l~s~~~-~~i~iwd~  355 (432)
                       +|.|+. +.+++||+
T Consensus       433 ~la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  433 TLAFGGEKAVLRVWDI  448 (463)
T ss_pred             EEEecCccceEEEeec
Confidence             445655 88999999

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.87  E-value=2.9e-20  Score=172.19  Aligned_cols=295  Identities=16%  Similarity=0.194  Sum_probs=210.5

Q ss_pred             CccccCC-CcEEEEEEcCCCCE-EEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005           26 DEELQDV-DIVSAIEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (432)
Q Consensus        26 ~~~~~h~-~~V~~~~fsp~g~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~  103 (432)
                      ...++|. +.|++++|..||.. ||+|+..|.+.+||++..+.+                          ......|.  
T Consensus       237 l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~--------------------------~v~~nah~--  288 (910)
T KOG1539|consen  237 LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI--------------------------NVTRNAHY--  288 (910)
T ss_pred             EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee--------------------------eeeecccc--
Confidence            3456664 79999999999975 677888899999999998754                          12334676  


Q ss_pred             ccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCC--Cccc-----------------
Q 014005          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHF--PFVS-----------------  162 (432)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~--~~~~-----------------  162 (432)
                                +.|..+.|+  +....+++++.|+.+++|=..++.  ...+..-.+|  ++.|                 
T Consensus       289 ----------~sv~~~~fl--~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~D  356 (910)
T KOG1539|consen  289 ----------GSVTGATFL--PGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQD  356 (910)
T ss_pred             ----------CCcccceec--CCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccC
Confidence                      788888884  566788888888888877443211  0000000000  0000                 


Q ss_pred             -----------------------------------------------------------------------c-----ccc
Q 014005          163 -----------------------------------------------------------------------S-----ENT  166 (432)
Q Consensus       163 -----------------------------------------------------------------------~-----~~~  166 (432)
                                                                                             .     ...
T Consensus       357 rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~  436 (910)
T KOG1539|consen  357 RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGR  436 (910)
T ss_pred             cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccccc
Confidence                                                                                   0     000


Q ss_pred             --cc------cccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEe--ecCCCCCeeEEEeCCCCCEEEEE
Q 014005          167 --LL------AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVY--PHAHDFNINSISNNSDCETFVSA  236 (432)
Q Consensus       167 --~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~  236 (432)
                        ..      -...+.+++.++.|++...|..  .|.|.+|+++   .+-....|  ...|.+.|+.++...-++.++++
T Consensus       437 ~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S--~G~Id~fNmQ---SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa  511 (910)
T KOG1539|consen  437 HVLDPKRFKKDDINATAVCVSFCGNFVFIGYS--KGTIDRFNMQ---SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSA  511 (910)
T ss_pred             EEecCccccccCcceEEEEEeccCceEEEecc--CCeEEEEEcc---cCeeecccccCccccCceeEEEecCCCceEEEc
Confidence              00      0244556677777888888887  8999999998   55555555  25799999999999999999998


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccc
Q 014005          237 -DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE  315 (432)
Q Consensus       237 -~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~  315 (432)
                       .+|.+..||.. .+..+..+        .....+..+..+... .++|.+..|=.|+++|..+.+.    .+.|.+|  
T Consensus       512 ~~~Gilkfw~f~-~k~l~~~l--------~l~~~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t~kv----vR~f~gh--  575 (910)
T KOG1539|consen  512 GADGILKFWDFK-KKVLKKSL--------RLGSSITGIVYHRVS-DLLAIALDDFSIRVVDVVTRKV----VREFWGH--  575 (910)
T ss_pred             cCcceEEEEecC-Ccceeeee--------ccCCCcceeeeeehh-hhhhhhcCceeEEEEEchhhhh----hHHhhcc--
Confidence             99999999999 44444433        334568888898887 8999999999999999998887    7999998  


Q ss_pred             ccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEE
Q 014005          316 SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYI  391 (432)
Q Consensus       316 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (432)
                                 .+.|++++|||||++|++++ |++|++||+   .++..+.....            ...+..+...-++
T Consensus       576 -----------~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~------------~~sls~SPngD~L  632 (910)
T KOG1539|consen  576 -----------GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSP------------CTSLSFSPNGDFL  632 (910)
T ss_pred             -----------ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCc------------ceeeEECCCCCEE
Confidence                       89999999999999999975 499999999   55555554432            2222223333356


Q ss_pred             Eeeccc-ceeeeec
Q 014005          392 ITTLYL-INLSALS  404 (432)
Q Consensus       392 ~~g~~~-~~i~~~~  404 (432)
                      +|...| +-|++|.
T Consensus       633 AT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  633 ATVHVDQNGIYLWS  646 (910)
T ss_pred             EEEEecCceEEEEE
Confidence            666555 6788888

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.87  E-value=1.1e-20  Score=172.17  Aligned_cols=340  Identities=9%  Similarity=0.082  Sum_probs=224.5

Q ss_pred             chhhhhhhhcCCCCCccccCCCcEEEEEEcCC-----------CCEEEEecccceEEEEEecCCcCCCCccccchhhhcc
Q 014005           12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKT-----------GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQ   80 (432)
Q Consensus        12 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~-----------g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   80 (432)
                      ..|++...-........+.|+..|+.+.--|.           ...+.|++.|++||+|+++.......  -.+..++..
T Consensus       349 YvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~v--yrRNils~~  426 (1080)
T KOG1408|consen  349 YVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQV--YRRNILSAN  426 (1080)
T ss_pred             EEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccce--eecccchhh
Confidence            46766654444445667889999999876662           12488999999999999987432210  001111110


Q ss_pred             ccccccccCCcceeeeeecCCccc--cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCC
Q 014005           81 MDFTSTSHPEYRYKTEFQSHEPEF--DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHF  158 (432)
Q Consensus        81 ~~~~~~~~p~~~~~~~~~~h~~~~--~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  158 (432)
                      -..++....+...+..  ...+.|  +-...++-.-.+.+++.  +|+|++|++|..-|.+++|++..-..  ...+..|
T Consensus       427 l~ki~y~d~~~q~~~d--~~~~~fdka~~s~~d~r~G~R~~~v--Sp~gqhLAsGDr~GnlrVy~Lq~l~~--~~~~eAH  500 (1080)
T KOG1408|consen  427 LSKIPYEDSTQQIMHD--ASAGIFDKALVSTCDSRFGFRALAV--SPDGQHLASGDRGGNLRVYDLQELEY--TCFMEAH  500 (1080)
T ss_pred             hhcCccccCchhhhhh--ccCCcccccchhhcCcccceEEEEE--CCCcceecccCccCceEEEEehhhhh--hhheecc
Confidence            0000000000000000  000001  11112222257899999  99999999999999999999986552  2233344


Q ss_pred             CccccccccccccccccccCCCC---CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC--CEE
Q 014005          159 PFVSSENTLLAEKNFMNEHNPPS---FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETF  233 (432)
Q Consensus       159 ~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l  233 (432)
                      .           ..|.++.|+..   .+++++++.  |..|.++|...  .-..++++ .+|...|+++.|--+|  ..+
T Consensus       501 e-----------sEilcLeyS~p~~~~kLLASasr--dRlIHV~Dv~r--ny~l~qtl-d~HSssITsvKFa~~gln~~M  564 (1080)
T KOG1408|consen  501 E-----------SEILCLEYSFPVLTNKLLASASR--DRLIHVYDVKR--NYDLVQTL-DGHSSSITSVKFACNGLNRKM  564 (1080)
T ss_pred             c-----------ceeEEEeecCchhhhHhhhhccC--CceEEEEeccc--ccchhhhh-cccccceeEEEEeecCCceEE
Confidence            4           77888888754   467788888  99999999874  33456667 8999999999998876  556


Q ss_pred             EEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc
Q 014005          234 VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  312 (432)
Q Consensus       234 ~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (432)
                      +++ .|..|. |+.........++..  .+..-....+..++..|.. +++++++.|..|+|||+.+|+.    .+.|++
T Consensus       565 iscGADksim-Fr~~qk~~~g~~f~r--~t~t~~ktTlYDm~Vdp~~-k~v~t~cQDrnirif~i~sgKq----~k~FKg  636 (1080)
T KOG1408|consen  565 ISCGADKSIM-FRVNQKASSGRLFPR--HTQTLSKTTLYDMAVDPTS-KLVVTVCQDRNIRIFDIESGKQ----VKSFKG  636 (1080)
T ss_pred             EeccCchhhh-eehhccccCceeccc--cccccccceEEEeeeCCCc-ceEEEEecccceEEEeccccce----eeeecc
Confidence            665 787775 444322222333310  0001112357889999998 9999999999999999999998    688887


Q ss_pred             cccccCCccceeeeecceeEEEEcCCCCEEEE-eeCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceee
Q 014005          313 AAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCV  388 (432)
Q Consensus       313 h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (432)
                      .          .++.+....+...|.|-|||+ ++|.++.++|.   +++..+..|...+.-.          .|.++|.
T Consensus       637 s----------~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~----------kF~nDCk  696 (1080)
T KOG1408|consen  637 S----------RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGV----------KFLNDCK  696 (1080)
T ss_pred             c----------ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeee----------eecccch
Confidence            2          223577889999999999998 58899999999   8898888887521111          1234443


Q ss_pred             EEEEeecccceeeeec
Q 014005          389 IYIITTLYLINLSALS  404 (432)
Q Consensus       389 ~~~~~g~~~~~i~~~~  404 (432)
                       .+++.+-||-|.||.
T Consensus       697 -HlISvsgDgCIFvW~  711 (1080)
T KOG1408|consen  697 -HLISVSGDGCIFVWK  711 (1080)
T ss_pred             -hheeecCCceEEEEE
Confidence             477888999999998

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.87  E-value=1.8e-20  Score=153.64  Aligned_cols=222  Identities=13%  Similarity=0.132  Sum_probs=162.7

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccc---ccccccccccCCCC-Ccceecce
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL---LAEKNFMNEHNPPS-FAHGYHLE  189 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~-~~~~~~~~  189 (432)
                      +.|+++..-+ ..|+++++|+.||.|.+||++...-..-..+-.. .+|.+.+.   -..-.|..+.|-|- ...+.+++
T Consensus        44 GsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k-~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS  121 (397)
T KOG4283|consen   44 GSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAK-HKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS  121 (397)
T ss_pred             Cccceeeecc-ccceEEeecCCCccEEEEEeccccchhhccceeh-eeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence            8899999953 5689999999999999999975431110000000 01111111   12256777777664 44556667


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC---CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      +  |.++++||.+   +.+..-.|  .-++.|.+-+++|-   .-++|+| .|-+|++-|+. .+.+..++       .+
T Consensus       122 F--DhtlKVWDtn---TlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~L-------sG  186 (397)
T KOG4283|consen  122 F--DHTLKVWDTN---TLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHTL-------SG  186 (397)
T ss_pred             c--cceEEEeecc---cceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceeee-------cc
Confidence            7  9999999998   55555555  45667888888884   3467788 99999999999 78888776       99


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccc-cCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-HGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      |...|.++.|+|...-+|++|+.||.|++||+|...-|   ...+..|... +.....-+.|.+.+.+++|+.||+++++
T Consensus       187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~  263 (397)
T KOG4283|consen  187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS  263 (397)
T ss_pred             ccCceEEEEeccCceeEEEecCCCceEEEEEeecccce---eEEeecccCccCccccccccccceeeeeeecccchhhhh
Confidence            99999999999998788999999999999999975444   4666665321 2222234567889999999999999998


Q ss_pred             e-eCCeEEEEec
Q 014005          345 R-DYMNLKVFRY  355 (432)
Q Consensus       345 ~-~~~~i~iwd~  355 (432)
                      + .|.++++|+.
T Consensus       264 ~gtd~r~r~wn~  275 (397)
T KOG4283|consen  264 CGTDDRIRVWNM  275 (397)
T ss_pred             ccCccceEEeec
Confidence            5 6699999999

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.6e-20  Score=162.90  Aligned_cols=249  Identities=16%  Similarity=0.202  Sum_probs=187.8

Q ss_pred             CCcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        32 ~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      .-+|.+..|.|+|+ .+++++....+..||+.+.+..                         .+....++.         
T Consensus       257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~-------------------------k~~~~~g~e---------  302 (514)
T KOG2055|consen  257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT-------------------------KLKPPYGVE---------  302 (514)
T ss_pred             cCccceeeecCCCceEEEecccceEEEEeeccccccc-------------------------cccCCCCcc---------
Confidence            45899999999999 8999999999999999988754                         112333443         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                        +..+.....  ++++++++..+..|.|.+.-..++++......              ++.+..+.|+.+++.++..+.
T Consensus       303 --~~~~e~FeV--Shd~~fia~~G~~G~I~lLhakT~eli~s~Ki--------------eG~v~~~~fsSdsk~l~~~~~  364 (514)
T KOG2055|consen  303 --EKSMERFEV--SHDSNFIAIAGNNGHIHLLHAKTKELITSFKI--------------EGVVSDFTFSSDSKELLASGG  364 (514)
T ss_pred             --cchhheeEe--cCCCCeEEEcccCceEEeehhhhhhhhheeee--------------ccEEeeEEEecCCcEEEEEcC
Confidence              145666777  89999999999999999999888875443333              378899999999998888877


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC-CcCCCCc
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-NMDDLTE  268 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~  268 (432)
                        +|.|.+||++   ...|++.+.....-.=++++.++++.+||+| +.|.|.|||.+.   +...-..+|. ++.....
T Consensus       365 --~GeV~v~nl~---~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s---~~~s~~PkPik~~dNLtt  436 (514)
T KOG2055|consen  365 --TGEVYVWNLR---QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS---CFASTNPKPIKTVDNLTT  436 (514)
T ss_pred             --CceEEEEecC---CcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch---hhccCCCCchhhhhhhhe
Confidence              8999999999   6688888843333345578888999999999 999999999762   1111111111 2245566


Q ss_pred             ceEEEEEcCCCCcEEEEEe--CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005          269 VITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~  346 (432)
                      .|++++|+|+. ++||.++  .+..+++-.+.+...    ...|..   .-.       .-+.|++++|||.|-|||.|.
T Consensus       437 ~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TV----FsNfP~---~n~-------~vg~vtc~aFSP~sG~lAvGN  501 (514)
T KOG2055|consen  437 AITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTV----FSNFPT---SNT-------KVGHVTCMAFSPNSGYLAVGN  501 (514)
T ss_pred             eeeeeeeCcch-hhhhhhhhccccceEEEeccceee----eccCCC---CCC-------cccceEEEEecCCCceEEeec
Confidence            79999999999 9999887  556788888876433    122221   111       146799999999999999997


Q ss_pred             C-CeEEEEec
Q 014005          347 Y-MNLKVFRY  355 (432)
Q Consensus       347 ~-~~i~iwd~  355 (432)
                      + |++.+|.+
T Consensus       502 e~grv~l~kL  511 (514)
T KOG2055|consen  502 EAGRVHLFKL  511 (514)
T ss_pred             CCCceeeEee
Confidence            7 99999987

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=5.7e-20  Score=156.50  Aligned_cols=287  Identities=16%  Similarity=0.266  Sum_probs=195.5

Q ss_pred             hhhhhhhcCCCCCccccCCCcEEEEEEcC-----CCCEEEE---ecccceEEEEEec-CCcCCCCccccchhhhcccccc
Q 014005           14 WKCSQAFGERNPDEELQDVDIVSAIEFDK-----TGDYLAV---GDRGGRVILFETV-GGKNTPNQHISRSELEKQMDFT   84 (432)
Q Consensus        14 w~~~~~~~~~~~~~~~~h~~~V~~~~fsp-----~g~~l~t---~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~   84 (432)
                      =||.++||+....+.--..=.|+.+.|+.     +.++||.   ++..|...+.-+. .++..                 
T Consensus         9 SKfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d-----------------   71 (472)
T KOG0303|consen    9 SKFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMD-----------------   71 (472)
T ss_pred             hhhHHHhccccchhhhhcceeeeeeeccccccccCCceEEEEEecCCCcceeecccccccccC-----------------
Confidence            37888898665555544555677777764     3445443   1222222222221 11110                 


Q ss_pred             ccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccc
Q 014005           85 STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE  164 (432)
Q Consensus        85 ~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  164 (432)
                             ...-.+.||+            ++|..++|+| .+.+.+|+|+.|.+|.||++-.+.+..-            
T Consensus        72 -------~~~P~v~GHt------------~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~------------  119 (472)
T KOG0303|consen   72 -------ASYPLVCGHT------------APVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRD------------  119 (472)
T ss_pred             -------CCCCCccCcc------------ccccccccCc-cCCceeecCCCCceEEEEECCCcccccC------------
Confidence                   1112467898            9999999987 3556899999999999999965542211            


Q ss_pred             cccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEE
Q 014005          165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRIN  242 (432)
Q Consensus       165 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~  242 (432)
                                                               ...++..+ .+|...|--++|+|... .|+++ .|.+|.
T Consensus       120 -----------------------------------------ltepvv~L-~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~  157 (472)
T KOG0303|consen  120 -----------------------------------------LTEPVVEL-YGHQRRVGLVQWHPTAPNVLLSAGSDNTVS  157 (472)
T ss_pred             -----------------------------------------cccceEEE-eecceeEEEEeecccchhhHhhccCCceEE
Confidence                                                     11334444 78999999999999755 45566 999999


Q ss_pred             EEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccc
Q 014005          243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF  322 (432)
Q Consensus       243 lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~  322 (432)
                      +||+. ++..+-.+        .|...|.++.|+.+| .+|++.+.|..|+|||.++++.    +..-.+|.        
T Consensus       158 iWnv~-tgeali~l--------~hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~----v~e~~~he--------  215 (472)
T KOG0303|consen  158 IWNVG-TGEALITL--------DHPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTV----VSEGVAHE--------  215 (472)
T ss_pred             EEecc-CCceeeec--------CCCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcE----eeeccccc--------
Confidence            99999 55554443        399999999999999 9999999999999999999886    34445551        


Q ss_pred             eeeeecceeEEEEcCCCCEEEEe----eCCeEEEEec----CcceeEeecceeeeehhhhhcccccccccceeeEEEEee
Q 014005          323 FTEIIASISDIKFANDGQHLLSR----DYMNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITT  394 (432)
Q Consensus       323 ~~~~~~~v~~~~~s~dg~~l~s~----~~~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  394 (432)
                          ...-..+.|-.+|..+.+|    ++..+-+||.    +++........         ...+..+|..+....-++|
T Consensus       216 ----G~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS---------nGvl~PFyD~dt~ivYl~G  282 (472)
T KOG0303|consen  216 ----GAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS---------NGVLLPFYDPDTSIVYLCG  282 (472)
T ss_pred             ----CCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccC---------CceEEeeecCCCCEEEEEe
Confidence                2345567888899966665    3489999999    55544444432         2234444555554556788


Q ss_pred             cccceeeeeccCCeeeecCCCceEEecCCceeeeeccC
Q 014005          395 LYLINLSALSAGMDSILQPDPIAIFYVSSPMVLEVQEG  432 (432)
Q Consensus       395 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (432)
                      .-|++|+.|.-      +.|+-.++|.+.-.-.|-|+|
T Consensus       283 KGD~~IRYyEi------t~d~P~~hyln~f~S~epQRG  314 (472)
T KOG0303|consen  283 KGDSSIRYFEI------TNEPPFVHYLNTFSSKEPQRG  314 (472)
T ss_pred             cCCcceEEEEe------cCCCceeEEecccccCCcccc
Confidence            99999999984      566767777776666666665

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.86  E-value=2.2e-19  Score=157.47  Aligned_cols=314  Identities=14%  Similarity=0.085  Sum_probs=206.7

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCC----ccccchh-hhcccccccccc--------CCcceee
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPN----QHISRSE-LEKQMDFTSTSH--------PEYRYKT   95 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~--------p~~~~~~   95 (432)
                      ..|.+.|.++..-.+|.+| +|+.|+.|..||-+-.+....    +.+..+. +++....++--.        -+..+..
T Consensus       284 ~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~  362 (626)
T KOG2106|consen  284 HAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL  362 (626)
T ss_pred             eecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence            3799999999999999855 599999999999433222100    1111111 111111111000        1233334


Q ss_pred             eeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccccc
Q 014005           96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (432)
Q Consensus        96 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  175 (432)
                      ..++|.            +....++-  +|+..++++++.|+++++|+  ..++.-....              ..+..+
T Consensus       363 ~v~gh~------------delwgla~--hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~--------------~d~~~~  412 (626)
T KOG2106|consen  363 TVQGHG------------DELWGLAT--HPSKNQLLTCGQDKHVRLWN--DHKLEWTKII--------------EDPAEC  412 (626)
T ss_pred             EEEecc------------cceeeEEc--CCChhheeeccCcceEEEcc--CCceeEEEEe--------------cCceeE
Confidence            556777            78888998  88999999999999999999  3332222222              157889


Q ss_pred             ccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceee
Q 014005          176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN  254 (432)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~  254 (432)
                      +.|+|.+ .++.|..  .|.-.+.|.+   +...+..- .. ..++++++|+|+|.+||.| .|+.|++|.+...+..+.
T Consensus       413 ~~fhpsg-~va~Gt~--~G~w~V~d~e---~~~lv~~~-~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~  484 (626)
T KOG2106|consen  413 ADFHPSG-VVAVGTA--TGRWFVLDTE---TQDLVTIH-TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS  484 (626)
T ss_pred             eeccCcc-eEEEeec--cceEEEEecc---cceeEEEE-ec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE
Confidence            9999999 8888887  8888888887   44444443 33 8899999999999999999 999999999986676665


Q ss_pred             EeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc-----c-ceeeeec
Q 014005          255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-----S-FFTEIIA  328 (432)
Q Consensus       255 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~-----~-~~~~~~~  328 (432)
                      .+.      ..+.++|+.+.|++|+ ++|.+-+.|-.|-.|.....+.    ....+. -......     . +...+..
T Consensus       485 r~~------k~~gs~ithLDwS~Ds-~~~~~~S~d~eiLyW~~~~~~~----~ts~kD-vkW~t~~c~lGF~v~g~s~~t  552 (626)
T KOG2106|consen  485 RVG------KCSGSPITHLDWSSDS-QFLVSNSGDYEILYWKPSECKQ----ITSVKD-VKWATYTCTLGFEVFGGSDGT  552 (626)
T ss_pred             Eee------eecCceeEEeeecCCC-ceEEeccCceEEEEEccccCcc----cceecc-eeeeeeEEEEEEEEecccCCc
Confidence            541      2334889999999999 9999999999999994332221    111111 0000000     0 0011234


Q ss_pred             ceeEEEEcCCCCEEEEeeC-CeEEEEec------CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceee
Q 014005          329 SISDIKFANDGQHLLSRDY-MNLKVFRY------EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLS  401 (432)
Q Consensus       329 ~v~~~~~s~dg~~l~s~~~-~~i~iwd~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~  401 (432)
                      .|..++-+.+.+++|+|++ |.|++|..      .+...+..|...          --+..+......++.+| .|.+|+
T Consensus       553 ~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~----------vt~V~Fl~~d~~li~tg-~D~Si~  621 (626)
T KOG2106|consen  553 DINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSH----------VTNVAFLCKDSHLISTG-KDTSIM  621 (626)
T ss_pred             hHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccce----------eEEEEEeeCCceEEecC-CCceEE
Confidence            5667777888899999988 99999998      233334444431          11122222333456666 999999


Q ss_pred             eec
Q 014005          402 ALS  404 (432)
Q Consensus       402 ~~~  404 (432)
                      .|+
T Consensus       622 qW~  624 (626)
T KOG2106|consen  622 QWR  624 (626)
T ss_pred             EEE
Confidence            996

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=2.9e-20  Score=162.66  Aligned_cols=273  Identities=11%  Similarity=0.063  Sum_probs=195.7

Q ss_pred             cchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCE-EEEecccceEEEEEecCCcCCCCccccchhhhccccccccccC
Q 014005           11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP   89 (432)
Q Consensus        11 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   89 (432)
                      ...|+++..-++ .......-.-.+.++.|+....+ .|+.+.|..+++|.-.... .                      
T Consensus        14 ~kl~D~s~~~~~-~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~-~----------------------   69 (673)
T KOG4378|consen   14 TKLSDFSDLETK-SEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT-P----------------------   69 (673)
T ss_pred             eEEeecccccCc-cccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCC-C----------------------
Confidence            456777754331 11111122335899999877642 2344567789999765541 1                      


Q ss_pred             CcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccc
Q 014005           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (432)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (432)
                      +...+....+..           ...|.++.+     ..++++|+..+.|+|||++...+.+  .+..|.          
T Consensus        70 ~Vp~~~k~~gd~-----------~~Cv~~~s~-----S~y~~sgG~~~~Vkiwdl~~kl~hr--~lkdh~----------  121 (673)
T KOG4378|consen   70 EVPRVRKLTGDN-----------AFCVACASQ-----SLYEISGGQSGCVKIWDLRAKLIHR--FLKDHQ----------  121 (673)
T ss_pred             ccceeeccccch-----------HHHHhhhhc-----ceeeeccCcCceeeehhhHHHHHhh--hccCCc----------
Confidence            111122222222           033444444     4799999999999999998655322  233444          


Q ss_pred             ccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCC
Q 014005          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLE  247 (432)
Q Consensus       170 ~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~-~d~~i~lwd~~  247 (432)
                       +.|.++.++....+++.++.  .|.|.|..+.   +......|..+....+.-+.++|..+.+++ + ++|.|.+||+.
T Consensus       122 -stvt~v~YN~~DeyiAsvs~--gGdiiih~~~---t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~  195 (673)
T KOG4378|consen  122 -STVTYVDYNNTDEYIASVSD--GGDIIIHGTK---TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ  195 (673)
T ss_pred             -ceeEEEEecCCcceeEEecc--CCcEEEEecc---cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence             78999999999999999998  8999999887   444444442344556778999999888775 4 89999999999


Q ss_pred             CCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005          248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (432)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  327 (432)
                       ...++..+      ...|..+...|+|+|.++.+|++.+.|+.|.+||+++.+.    ...+..              .
T Consensus       196 -g~sp~~~~------~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s----~~~l~y--------------~  250 (673)
T KOG4378|consen  196 -GMSPIFHA------SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS----TDRLTY--------------S  250 (673)
T ss_pred             -CCCcccch------hhhccCCcCcceecCCccceEEEecccceEEEeecccccc----cceeee--------------c
Confidence             33333322      3789999999999999988999999999999999997665    455554              4


Q ss_pred             cceeEEEEcCCCCEEEEeeC-CeEEEEec----CcceeEeecce
Q 014005          328 ASISDIKFANDGQHLLSRDY-MNLKVFRY----EPVMTLSFCGI  366 (432)
Q Consensus       328 ~~v~~~~~s~dg~~l~s~~~-~~i~iwd~----~~~~~~~~~~~  366 (432)
                      .+.+.++|+++|.+|+.|+. |.|..||+    .|+..+..|..
T Consensus       251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~  294 (673)
T KOG4378|consen  251 HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA  294 (673)
T ss_pred             CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc
Confidence            68999999999999999966 99999999    78888888875

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.86  E-value=5.4e-20  Score=167.12  Aligned_cols=330  Identities=12%  Similarity=0.100  Sum_probs=197.1

Q ss_pred             CccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccc--cccccccC--------------
Q 014005           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQM--DFTSTSHP--------------   89 (432)
Q Consensus        26 ~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p--------------   89 (432)
                      ....+|.+.|+++.|+|.+..|++++.|.++.+|..+...-+-......-++.+..  ..-..+.|              
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~  340 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF  340 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence            33458999999999999999999999999999999876532211111111111100  11111222              


Q ss_pred             ---------CcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCC
Q 014005           90 ---------EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHF  158 (432)
Q Consensus        90 ---------~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~  158 (432)
                               .+.....+.||.            +.|.++.|  +|.|++|++.+.|.+-+++-.-..+  ...+...+.|
T Consensus       341 hlWkt~d~~~w~~~~~iSGH~------------~~V~dv~W--~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH  406 (764)
T KOG1063|consen  341 HLWKTKDKTFWTQEPVISGHV------------DGVKDVDW--DPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH  406 (764)
T ss_pred             EEEeccCccceeecccccccc------------ccceeeee--cCCCCEEEEeccccceeeecccccccceeeecccccc
Confidence                     122333456777            89999999  8999999999999999998665222  2222222222


Q ss_pred             CccccccccccccccccccCCC------------------------------------------CCcceecceee-----
Q 014005          159 PFVSSENTLLAEKNFMNEHNPP------------------------------------------SFAHGYHLEWT-----  191 (432)
Q Consensus       159 ~~~~~~~~~~~~~~i~~~~~~~------------------------------------------~~~~~~~~~~~-----  191 (432)
                      .           ..+.++++-+                                          ++..++.-+.+     
T Consensus       407 G-----------yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~  475 (764)
T KOG1063|consen  407 G-----------YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFF  475 (764)
T ss_pred             c-----------ccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCc
Confidence            2           2222333222                                          11111111100     


Q ss_pred             ----ccceE-EEE--ee-c-------ccc---------cceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-----CCeE
Q 014005          192 ----ENMAT-KIA--NV-G-------NSV---------HARCQKVYPHAHDFNINSISNNSDCETFVSA-D-----DLRI  241 (432)
Q Consensus       192 ----~~~~v-~i~--d~-~-------~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-----d~~i  241 (432)
                          .+|.. ..|  .. .       ..+         ....++.+ -+|...|.+++.+|+++++|++ .     ...|
T Consensus       476 ~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL-YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI  554 (764)
T KOG1063|consen  476 PGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL-YGHGYEVYALAISPTGNLIASACKSSLKEHAVI  554 (764)
T ss_pred             ccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh-ccCceeEEEEEecCCCCEEeehhhhCCccceEE
Confidence                00000 000  00 0       000         00011222 4899999999999999999987 4     3468


Q ss_pred             EEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcc
Q 014005          242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS  321 (432)
Q Consensus       242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~  321 (432)
                      ++|+.. .-.....       +.+|+-.|+.++||||+ ++|++.+.|.++.+|...............+.|        
T Consensus       555 ~lw~t~-~W~~~~~-------L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H--------  617 (764)
T KOG1063|consen  555 RLWNTA-NWLQVQE-------LEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH--------  617 (764)
T ss_pred             EEEecc-chhhhhe-------ecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhcccccc--------
Confidence            999998 3333333       38999999999999999 999999999999999976433211112234454        


Q ss_pred             ceeeeecceeEEEEcCCCCEEEEee-CCeEEEEecCcc--eeEeecceeeeehhhhhcccccccccceeeEEEEeecccc
Q 014005          322 FFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRYEPV--MTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLI  398 (432)
Q Consensus       322 ~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  398 (432)
                           ..-|++..|+|++.+++|++ |.+|++|.....  +.+.-... .-+........++....+.....++.|-..|
T Consensus       618 -----tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~-~~~~~aVTAv~~~~~~~~e~~~~vavGle~G  691 (764)
T KOG1063|consen  618 -----TRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC-LKFSLAVTAVAYLPVDHNEKGDVVAVGLEKG  691 (764)
T ss_pred             -----ceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch-hccCCceeeEEeeccccccccceEEEEeccc
Confidence                 78899999999999999985 599999999111  21111000 0000000011122222233334688999999


Q ss_pred             eeeeec
Q 014005          399 NLSALS  404 (432)
Q Consensus       399 ~i~~~~  404 (432)
                      .|.+|.
T Consensus       692 eI~l~~  697 (764)
T KOG1063|consen  692 EIVLWR  697 (764)
T ss_pred             EEEEEe
Confidence            999999

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.86  E-value=1.8e-18  Score=155.65  Aligned_cols=269  Identities=11%  Similarity=0.071  Sum_probs=172.8

Q ss_pred             CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEE
Q 014005           44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA  123 (432)
Q Consensus        44 g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~  123 (432)
                      ++.+++++.|+.+++||+.+++.                           ...+..+.             .+.+++|  
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~---------------------------~~~~~~~~-------------~~~~l~~--   38 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEV---------------------------TRTFPVGQ-------------RPRGITL--   38 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCce---------------------------EEEEECCC-------------CCCceEE--
Confidence            35788999999999999987653                           24555543             3667999  


Q ss_pred             cCCCCEE-EEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc-eeeccceEEEEee
Q 014005          124 APNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL-EWTENMATKIANV  201 (432)
Q Consensus       124 s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~v~i~d~  201 (432)
                      +|+++.+ ++++.++.|++||..+++....  +..+            ..+..+++++++..++.. ..  ++.+++||+
T Consensus        39 ~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--~~~~------------~~~~~~~~~~~g~~l~~~~~~--~~~l~~~d~  102 (300)
T TIGR03866        39 SKDGKLLYVCASDSDTIQVIDLATGEVIGT--LPSG------------PDPELFALHPNGKILYIANED--DNLVTVIDI  102 (300)
T ss_pred             CCCCCEEEEEECCCCeEEEEECCCCcEEEe--ccCC------------CCccEEEECCCCCEEEEEcCC--CCeEEEEEC
Confidence            8899876 5667889999999988764332  2111            234567889998876543 33  789999999


Q ss_pred             cccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC-CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCC
Q 014005          202 GNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  279 (432)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  279 (432)
                      .   ..+.+..+ . +...+.+++|+|+++.++++ .+ ..+.+||.+ +.......        .....+..++|+|++
T Consensus       103 ~---~~~~~~~~-~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~-~~~~~~~~--------~~~~~~~~~~~s~dg  168 (300)
T TIGR03866       103 E---TRKVLAEI-P-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK-TYEIVDNV--------LVDQRPRFAEFTADG  168 (300)
T ss_pred             C---CCeEEeEe-e-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCC-CCeEEEEE--------EcCCCccEEEECCCC
Confidence            8   55566655 2 23457889999999999988 55 457778988 44443322        112345779999999


Q ss_pred             CcEEE-EEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE--eeCCeEEEEec-
Q 014005          280 CNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS--RDYMNLKVFRY-  355 (432)
Q Consensus       280 ~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s--~~~~~i~iwd~-  355 (432)
                       +.|+ ++..++.|++||+++++.    ...+..+......      .......++|+|+|++++.  ++++.+.+||+ 
T Consensus       169 -~~l~~~~~~~~~v~i~d~~~~~~----~~~~~~~~~~~~~------~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~  237 (300)
T TIGR03866       169 -KELWVSSEIGGTVSVIDVATRKV----IKKITFEIPGVHP------EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK  237 (300)
T ss_pred             -CEEEEEcCCCCEEEEEEcCccee----eeeeeeccccccc------ccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence             7664 445699999999998764    3433321000000      0113456889999998654  34488999999 


Q ss_pred             --CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005          356 --EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       356 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                        +.+..+....           ...+..+..+-...+++...+|.|.+|+..
T Consensus       238 ~~~~~~~~~~~~-----------~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       238 TYEVLDYLLVGQ-----------RVWQLAFTPDEKYLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             CCcEEEEEEeCC-----------CcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence              2222222111           011111111222223344678999999954

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.85  E-value=5.7e-20  Score=155.59  Aligned_cols=207  Identities=13%  Similarity=0.162  Sum_probs=146.7

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--------------eeeeeecCCCCccccccccccccccccccCC
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--------------VKKIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  179 (432)
                      +.++.+.-.+-++..+.++-+..|.|+||++....              .+.+..++.|.           +.=+.+.|+
T Consensus       152 g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk-----------~EGy~LdWS  220 (440)
T KOG0302|consen  152 GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK-----------GEGYGLDWS  220 (440)
T ss_pred             cccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC-----------ccceeeecc
Confidence            56666666322345566666889999999986321              12223333333           455678888


Q ss_pred             CCCcc-eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEe
Q 014005          180 PSFAH-GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIV  256 (432)
Q Consensus       180 ~~~~~-~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~  256 (432)
                      |...- +.+|.-  .+.|++|....+.-..-.+.| .+|+..|-.++|+|..+ .|+++ -||+|+|||++...+.-.. 
T Consensus       221 p~~~g~LlsGDc--~~~I~lw~~~~g~W~vd~~Pf-~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-  296 (440)
T KOG0302|consen  221 PIKTGRLLSGDC--VKGIHLWEPSTGSWKVDQRPF-TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-  296 (440)
T ss_pred             cccccccccCcc--ccceEeeeeccCceeecCccc-cccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee-
Confidence            84332 444444  568999988753222223344 67999999999999754 56677 8999999999943222111 


Q ss_pred             ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc
Q 014005          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (432)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s  336 (432)
                           ....|.+.|+-|.|+.+. .+||+|+.||+++|||+|+-+. .+++..|+.|             ..+|+++.|+
T Consensus       297 -----~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~-~~pVA~fk~H-------------k~pItsieW~  356 (440)
T KOG0302|consen  297 -----STKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKS-GQPVATFKYH-------------KAPITSIEWH  356 (440)
T ss_pred             -----EeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccC-CCcceeEEec-------------cCCeeEEEec
Confidence                 127899999999999998 6999999999999999997542 2346788887             8999999999


Q ss_pred             CC--CCEEEEeeCCeEEEEec
Q 014005          337 ND--GQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       337 ~d--g~~l~s~~~~~i~iwd~  355 (432)
                      |.  +.+.++|.|..|.+||+
T Consensus       357 p~e~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  357 PHEDSVIAASGEDNQITIWDL  377 (440)
T ss_pred             cccCceEEeccCCCcEEEEEe
Confidence            95  44555678899999999

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.85  E-value=9.5e-20  Score=157.95  Aligned_cols=257  Identities=13%  Similarity=0.191  Sum_probs=181.7

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCCCccccccccccccccccccCCCCC-cceeccee
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYHLEW  190 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~  190 (432)
                      ++|++++|+|..+-+++++|...|.|-+||+.+.+  ...+.-+..|.           .+|.++.|+|.. ..++..+.
T Consensus       187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs-----------~~Vs~l~F~P~n~s~i~ssSy  255 (498)
T KOG4328|consen  187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS-----------GPVSGLKFSPANTSQIYSSSY  255 (498)
T ss_pred             cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC-----------ccccceEecCCChhheeeecc
Confidence            89999999776566789999999999999996322  23333344444           789999999874 46677777


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                        ||++++-|++..... .+... ......+.++.|+.+.+.++.+ .=|...+||++..+.....+       .-|...
T Consensus       256 --DGtiR~~D~~~~i~e-~v~s~-~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~-------~lh~kK  324 (498)
T KOG4328|consen  256 --DGTIRLQDFEGNISE-EVLSL-DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL-------RLHKKK  324 (498)
T ss_pred             --CceeeeeeecchhhH-HHhhc-CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh-------hhhhcc
Confidence              999999999844221 11211 2344567788899988888888 66799999999666655544       667779


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-eeCC
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYM  348 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~~  348 (432)
                      |++++++|-.+.+||+|+.|++.+|||+|.-.......-..-.             |...|.+..|||+|--|++ +-|+
T Consensus       325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~-------------HrrsV~sAyFSPs~gtl~TT~~D~  391 (498)
T KOG4328|consen  325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLP-------------HRRSVNSAYFSPSGGTLLTTCQDN  391 (498)
T ss_pred             cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccc-------------ccceeeeeEEcCCCCceEeeccCC
Confidence            9999999999899999999999999999964321100111122             3789999999998544555 7779


Q ss_pred             eEEEEec-------CcceeEeecce-eeeehhhhhcccccccccceeeEEEEeecccceeeeeccC-Ceeeec
Q 014005          349 NLKVFRY-------EPVMTLSFCGI-YVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG-MDSILQ  412 (432)
Q Consensus       349 ~i~iwd~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~-~~~~~~  412 (432)
                      .|+|||.       .++.++..... ..|+      +++-..|..+ ..+++.|.+...|.|++.. .+.+++
T Consensus       392 ~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl------T~fKA~W~P~-~~li~vg~~~r~IDv~~~~~~q~v~e  457 (498)
T KOG4328|consen  392 EIRVFDSSCISAKDEPLGTIPHNNRTGRWL------TPFKAAWDPD-YNLIVVGRYPRPIDVFDGNGGQMVCE  457 (498)
T ss_pred             ceEEeecccccccCCccceeeccCcccccc------cchhheeCCC-ccEEEEeccCcceeEEcCCCCEEeee
Confidence            9999999       34444433221 1121      2333333333 3468899999999999955 665666

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=2.2e-19  Score=146.91  Aligned_cols=273  Identities=14%  Similarity=0.173  Sum_probs=183.0

Q ss_pred             cCCCcEEEEEEcCCCC-EEEEeccc-------ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee-cC
Q 014005           30 QDVDIVSAIEFDKTGD-YLAVGDRG-------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SH  100 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~-~l~t~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h  100 (432)
                      .|.+.|+.++-+|..+ .|+|+..+       ..+.||.+.......+    .              -..+++..+. .+
T Consensus        61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~----~--------------~tlE~v~~Ldtea  122 (370)
T KOG1007|consen   61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN----S--------------STLECVASLDTEA  122 (370)
T ss_pred             cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc----c--------------chhhHhhcCCHHH
Confidence            4567899999999655 55655432       2478998866432100    0              0111222222 12


Q ss_pred             CccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC
Q 014005          101 EPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  180 (432)
Q Consensus       101 ~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  180 (432)
                      -            +.|.|+.|  .|++..+++-. |+.|.+|++..+... ...+....      .........+-+|+|
T Consensus       123 v------------g~i~cvew--~Pns~klasm~-dn~i~l~~l~ess~~-vaev~ss~------s~e~~~~ftsg~Wsp  180 (370)
T KOG1007|consen  123 V------------GKINCVEW--EPNSDKLASMD-DNNIVLWSLDESSKI-VAEVLSSE------SAEMRHSFTSGAWSP  180 (370)
T ss_pred             h------------CceeeEEE--cCCCCeeEEec-cCceEEEEcccCcch-heeecccc------cccccceecccccCC
Confidence            2            68999999  67888888776 889999999866521 11111000      000224566777877


Q ss_pred             --CCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCE-EEEE-cCCeEEEEeCCCCCceeeEe
Q 014005          181 --SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIV  256 (432)
Q Consensus       181 --~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~  256 (432)
                        ++..+.+.+   ++++..||++   +..+...+..+|...+..+.|+|+.+. |+++ +||.|++||.+.+..++..+
T Consensus       181 HHdgnqv~tt~---d~tl~~~D~R---T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el  254 (370)
T KOG1007|consen  181 HHDGNQVATTS---DSTLQFWDLR---TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL  254 (370)
T ss_pred             CCccceEEEeC---CCcEEEEEcc---chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc
Confidence              455555544   7899999999   555555555789999999999998775 5566 99999999999777777654


Q ss_pred             ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccc-----ceeecccc--c--cc---CCcccee
Q 014005          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS-----ARILRDAA--E--SH---GSKSFFT  324 (432)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~h~--~--~~---~~~~~~~  324 (432)
                             .+|..+|+++.|+|...+++++|+.|..|.+|...+-.--.+.     ....++|.  +  .|   +....+.
T Consensus       255 -------~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd  327 (370)
T KOG1007|consen  255 -------PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD  327 (370)
T ss_pred             -------CCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc
Confidence                   9999999999999988799999999999999987642210000     00111100  0  01   1125678


Q ss_pred             eeecceeEEEEcCCCCEEEEe-eC-CeEEEEec
Q 014005          325 EIIASISDIKFANDGQHLLSR-DY-MNLKVFRY  355 (432)
Q Consensus       325 ~~~~~v~~~~~s~dg~~l~s~-~~-~~i~iwd~  355 (432)
                      +|...|.+++||.-..+++++ ++ |++.|=++
T Consensus       328 ehEDSVY~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  328 EHEDSVYALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             ccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence            889999999999988887764 55 99988877

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2e-19  Score=156.43  Aligned_cols=222  Identities=13%  Similarity=0.155  Sum_probs=167.7

Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                      .++.|.+++-  +|+|.+++.|+-.|.+++|.+.+|.+..+.  ..|-           ..|+++.|+.++.++++++. 
T Consensus        80 ~Pg~v~al~s--~n~G~~l~ag~i~g~lYlWelssG~LL~v~--~aHY-----------Q~ITcL~fs~dgs~iiTgsk-  143 (476)
T KOG0646|consen   80 LPGPVHALAS--SNLGYFLLAGTISGNLYLWELSSGILLNVL--SAHY-----------QSITCLKFSDDGSHIITGSK-  143 (476)
T ss_pred             cccceeeeec--CCCceEEEeecccCcEEEEEeccccHHHHH--Hhhc-----------cceeEEEEeCCCcEEEecCC-
Confidence            3478999998  899988888889999999999999854443  3333           57999999999999999999 


Q ss_pred             ccceEEEEeecc------cccceeeEEeecCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005          192 ENMATKIANVGN------SVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (432)
Q Consensus       192 ~~~~v~i~d~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (432)
                       ||.|.+|.+-.      ....++++.+ ..|+-.|+++...+.  ...++++ .|.++++||+. .+..+..+      
T Consensus       144 -Dg~V~vW~l~~lv~a~~~~~~~p~~~f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS-~g~LLlti------  214 (476)
T KOG0646|consen  144 -DGAVLVWLLTDLVSADNDHSVKPLHIF-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS-LGVLLLTI------  214 (476)
T ss_pred             -CccEEEEEEEeecccccCCCccceeee-ccCcceeEEEEecCCCccceEEEecCCceEEEEEec-cceeeEEE------
Confidence             99999998642      1245677888 899999999998765  3467777 99999999999 66665544      


Q ss_pred             cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeec--ceeEEEEcCCCC
Q 014005          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQ  340 (432)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~--~v~~~~~s~dg~  340 (432)
                        .....+.+++.+|-+ ..+..|+.+|.|.+.++..-.....-+..-..| ..-.....+.+|.+  .|++++.+-||.
T Consensus       215 --~fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~-~~~t~~~~~~Gh~~~~~ITcLais~Dgt  290 (476)
T KOG0646|consen  215 --TFPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRH-EENTQINVLVGHENESAITCLAISTDGT  290 (476)
T ss_pred             --ecCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccc-cccceeeeeccccCCcceeEEEEecCcc
Confidence              344679999999998 999999999999999887533100000000111 11111233444466  999999999999


Q ss_pred             EEEEeeC-CeEEEEec---CcceeEe
Q 014005          341 HLLSRDY-MNLKVFRY---EPVMTLS  362 (432)
Q Consensus       341 ~l~s~~~-~~i~iwd~---~~~~~~~  362 (432)
                      +|++|+. |.+.|||+   .+++++.
T Consensus       291 lLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  291 LLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             EEEeeCCCCCEEEEecchHHHHHHHh
Confidence            9999966 99999999   4454443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.85  E-value=1.7e-18  Score=151.91  Aligned_cols=271  Identities=15%  Similarity=0.229  Sum_probs=185.6

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .....|.|+.|.++|+ ++||+.+|.|.||+..+.+.                           .++...|.        
T Consensus       244 ~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~---------------------------~k~~~aH~--------  287 (626)
T KOG2106|consen  244 REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRI---------------------------SKQVHAHD--------  287 (626)
T ss_pred             ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceE---------------------------EeEeeecC--------
Confidence            3447899999999998 67999999999999876542                           24445888        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                          +.|.++..  ..+| .|++|+.|+.|..||-.-.+   +.....+.         .-+.++.++-....  ++.|+
T Consensus       288 ----ggv~~L~~--lr~G-tllSGgKDRki~~Wd~~y~k---~r~~elPe---------~~G~iRtv~e~~~d--i~vGT  346 (626)
T KOG2106|consen  288 ----GGVFSLCM--LRDG-TLLSGGKDRKIILWDDNYRK---LRETELPE---------QFGPIRTVAEGKGD--ILVGT  346 (626)
T ss_pred             ----CceEEEEE--ecCc-cEeecCccceEEeccccccc---cccccCch---------hcCCeeEEecCCCc--EEEee
Confidence                99999999  5788 45669999999999932222   22211111         11556666554444  55555


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      .  .+.|-.-.++   .+..+..  .+|......++.+|+.+.++++ .|+.+++|+ +  .+....        ..-..
T Consensus       347 t--rN~iL~Gt~~---~~f~~~v--~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt--------~~~~d  408 (626)
T KOG2106|consen  347 T--RNFILQGTLE---NGFTLTV--QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWT--------KIIED  408 (626)
T ss_pred             c--cceEEEeeec---CCceEEE--EecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEE--------EEecC
Confidence            4  4444444444   2222222  5888999999999999999988 999999999 3  222221        12235


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  347 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-  347 (432)
                      ++.++.|+|.|  .+|.|...|...+.|.++..+    +..-..              ..+++.++|+|+|.+||.|+. 
T Consensus       409 ~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~l----v~~~~d--------------~~~ls~v~ysp~G~~lAvgs~d  468 (626)
T KOG2106|consen  409 PAECADFHPSG--VVAVGTATGRWFVLDTETQDL----VTIHTD--------------NEQLSVVRYSPDGAFLAVGSHD  468 (626)
T ss_pred             ceeEeeccCcc--eEEEeeccceEEEEeccccee----EEEEec--------------CCceEEEEEcCCCCEEEEecCC
Confidence            68899999997  899999999999999998543    222222              478999999999999999965 


Q ss_pred             CeEEEEec----CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          348 MNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       348 ~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      +.|+||.+    ..+..+..+..          +++..+-.+....++++-+-|-.|-.|..
T Consensus       469 ~~iyiy~Vs~~g~~y~r~~k~~g----------s~ithLDwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  469 NHIYIYRVSANGRKYSRVGKCSG----------SPITHLDWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             CeEEEEEECCCCcEEEEeeeecC----------ceeEEeeecCCCceEEeccCceEEEEEcc
Confidence            99999999    33333333321          23333333333345666666667777753

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.6e-20  Score=179.94  Aligned_cols=254  Identities=13%  Similarity=0.149  Sum_probs=190.6

Q ss_pred             CccccCCCcEEEEEEcCCCCE----EEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCC
Q 014005           26 DEELQDVDIVSAIEFDKTGDY----LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE  101 (432)
Q Consensus        26 ~~~~~h~~~V~~~~fsp~g~~----l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~  101 (432)
                      ...++-...-+.++|.+.|..    ||.|..||.|.+||...-..                     ..+...+.++..|+
T Consensus        58 ~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~---------------------~~~~~~la~~~~h~  116 (1049)
T KOG0307|consen   58 VGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA---------------------NASEEVLATKSKHT  116 (1049)
T ss_pred             cccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc---------------------CcchHHHhhhcccC
Confidence            334555667889999998876    88899999999999866210                     00234556778888


Q ss_pred             ccccccchhhhhcceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC
Q 014005          102 PEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  180 (432)
Q Consensus       102 ~~~~~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  180 (432)
                                  +.|..+.|  ++. +++||+|+.||.|.|||+...+......-..           ..+.|.+++|+.
T Consensus       117 ------------G~V~gLDf--N~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~-----------~~~eI~~lsWNr  171 (1049)
T KOG0307|consen  117 ------------GPVLGLDF--NPFQGNLLASGADDGEILIWDLNKPETPFTPGSQA-----------PPSEIKCLSWNR  171 (1049)
T ss_pred             ------------Cceeeeec--cccCCceeeccCCCCcEEEeccCCcCCCCCCCCCC-----------CcccceEeccch
Confidence                        99999999  555 4599999999999999998644221111111           237899999998


Q ss_pred             CCccee-cceeeccceEEEEeecccccceeeEEeecCCC--CCeeEEEeCCCCC-EEEEE--cC--CeEEEEeCCCCCce
Q 014005          181 SFAHGY-HLEWTENMATKIANVGNSVHARCQKVYPHAHD--FNINSISNNSDCE-TFVSA--DD--LRINLWNLEISDQC  252 (432)
Q Consensus       181 ~~~~~~-~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~-~l~~~--~d--~~i~lwd~~~~~~~  252 (432)
                      ....+. +++.  +|.+.|||++   ..+++-.+ ..+.  ..+..++|+|++. .++++  +|  -.|.+||+|.....
T Consensus       172 kvqhILAS~s~--sg~~~iWDlr---~~~pii~l-s~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP  245 (1049)
T KOG0307|consen  172 KVSHILASGSP--SGRAVIWDLR---KKKPIIKL-SDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP  245 (1049)
T ss_pred             hhhHHhhccCC--CCCceecccc---CCCccccc-ccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc
Confidence            866554 4454  7899999999   44444444 2232  3578899999854 34444  33  36999999988888


Q ss_pred             eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeE
Q 014005          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (432)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  332 (432)
                      ++++       ++|...|.++.|++.++.+|++++.|++|.+|+..+++.    +..+...             .+++..
T Consensus       246 ~k~~-------~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv----l~~~p~~-------------~nW~fd  301 (1049)
T KOG0307|consen  246 LKIL-------EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV----LGELPAQ-------------GNWCFD  301 (1049)
T ss_pred             hhhh-------cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE----eeecCCC-------------Ccceee
Confidence            8876       899999999999998879999999999999999999886    4555442             589999


Q ss_pred             EEEcCCCC-EEEEe-eCCeEEEEec
Q 014005          333 IKFANDGQ-HLLSR-DYMNLKVFRY  355 (432)
Q Consensus       333 ~~~s~dg~-~l~s~-~~~~i~iwd~  355 (432)
                      +.|.|... .++++ -+|.|.|+.+
T Consensus       302 v~w~pr~P~~~A~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  302 VQWCPRNPSVMAAASFDGKISIYSL  326 (1049)
T ss_pred             eeecCCCcchhhhheeccceeeeee
Confidence            99999876 44444 4499999999

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=5.7e-19  Score=154.65  Aligned_cols=258  Identities=15%  Similarity=0.150  Sum_probs=182.8

Q ss_pred             cceeEEEEEEcCCCC-EEEEEeCCCeEEEEEccCc--ceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                      ..+.++.|  +.... ..++.+.|..|++|.-...  ++..+.....             ..-.|++......+++.|+.
T Consensus        35 pg~~s~~w--~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g-------------d~~~Cv~~~s~S~y~~sgG~   99 (673)
T KOG4378|consen   35 PGDFSFNW--QRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG-------------DNAFCVACASQSLYEISGGQ   99 (673)
T ss_pred             Ccceeeec--cccceEEEeecCCceeEEEecccCCCCccceeecccc-------------chHHHHhhhhcceeeeccCc
Confidence            45889999  44442 2333467889999975433  1222222221             23445555566688888888


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                        .+.|+|||++   ...+.+.+ ++|.+.|+++.++-...++|++ ..|.|.+..+. ++.....+      -.+....
T Consensus       100 --~~~Vkiwdl~---~kl~hr~l-kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~-t~~~tt~f------~~~sgqs  166 (673)
T KOG4378|consen  100 --SGCVKIWDLR---AKLIHRFL-KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK-TKQKTTTF------TIDSGQS  166 (673)
T ss_pred             --CceeeehhhH---HHHHhhhc-cCCcceeEEEEecCCcceeEEeccCCcEEEEecc-cCccccce------ecCCCCe
Confidence              9999999998   66677777 8999999999999999999999 88999999998 55544443      0233456


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE-EE-eeC
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL-LS-RDY  347 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l-~s-~~~  347 (432)
                      |+-+.|+|....+|.+++.+|.|.+||.......   ....+.|             ..+..+++|+|....| ++ |-|
T Consensus       167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---~~~~~~H-------------sAP~~gicfspsne~l~vsVG~D  230 (673)
T KOG4378|consen  167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---FHASEAH-------------SAPCRGICFSPSNEALLVSVGYD  230 (673)
T ss_pred             EEEeecccccceeeEeeccCCeEEEEeccCCCcc---cchhhhc-------------cCCcCcceecCCccceEEEeccc
Confidence            7899999988667888999999999999865542   2333445             7899999999987655 44 566


Q ss_pred             CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC-------CeeeecCCCce
Q 014005          348 MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG-------MDSILQPDPIA  417 (432)
Q Consensus       348 ~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~-------~~~~~~~~~~~  417 (432)
                      ..|.+||+   +...++..            ..++..+.+..|..+++.|+..|.|..||-.       .-....+.=+.
T Consensus       231 kki~~yD~~s~~s~~~l~y------------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~  298 (673)
T KOG4378|consen  231 KKINIYDIRSQASTDRLTY------------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTR  298 (673)
T ss_pred             ceEEEeecccccccceeee------------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeE
Confidence            99999999   33333332            3367777788899999999999999999932       11222223345


Q ss_pred             EEecCCceee
Q 014005          418 IFYVSSPMVL  427 (432)
Q Consensus       418 ~~~~~~~~~~  427 (432)
                      +.+.++|.|+
T Consensus       299 vafq~s~tvl  308 (673)
T KOG4378|consen  299 VAFQPSPTVL  308 (673)
T ss_pred             EEeeecceee
Confidence            5566666444

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.83  E-value=1.6e-19  Score=162.60  Aligned_cols=105  Identities=30%  Similarity=0.389  Sum_probs=85.8

Q ss_pred             EEEEE-cCCeEEEEeCCCCCceeeEeecCC-CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccccee
Q 014005          232 TFVSA-DDLRINLWNLEISDQCFNIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  309 (432)
Q Consensus       232 ~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  309 (432)
                      .|+++ +||.|++|.+...+-.-. . ..| ..+..|...|+++.|||-...+|++++.|-+|++||+++++.    ...
T Consensus       642 rLAVa~ddg~i~lWr~~a~gl~e~-~-~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~----~~~  715 (1012)
T KOG1445|consen  642 RLAVATDDGQINLWRLTANGLPEN-E-MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL----YSR  715 (1012)
T ss_pred             HeeecccCceEEEEEeccCCCCcc-c-CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh----hhe
Confidence            57777 888888888873332111 1 111 134789999999999998778999999999999999999887    578


Q ss_pred             ecccccccCCccceeeeecceeEEEEcCCCCEEEE-eeCCeEEEEec
Q 014005          310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKVFRY  355 (432)
Q Consensus       310 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~~~i~iwd~  355 (432)
                      +.+|             .+.|.+++|||||+.+|+ |-||+|++|+.
T Consensus       716 l~gH-------------tdqIf~~AWSpdGr~~AtVcKDg~~rVy~P  749 (1012)
T KOG1445|consen  716 LVGH-------------TDQIFGIAWSPDGRRIATVCKDGTLRVYEP  749 (1012)
T ss_pred             eccC-------------cCceeEEEECCCCcceeeeecCceEEEeCC
Confidence            8887             899999999999999999 67899999999

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.83  E-value=9.7e-19  Score=145.40  Aligned_cols=264  Identities=12%  Similarity=0.149  Sum_probs=181.3

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      -...+.|+|||..|++-+.|..+++|++......+..          +...     ......+++-..           .
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~----------~~~~-----~~~~~~~~r~~e-----------g  104 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA----------DGPL-----NFSKHLSYRYQE-----------G  104 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCC----------CCcc-----ccccceeEEecc-----------C
Confidence            4567899999999999999999999998543211000          0000     000000111111           1


Q ss_pred             cceeEEEEEE-----cCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          114 EKINRVRWCA-----APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       114 ~~v~~l~~~~-----s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                      ..|..-+|.+     .|+..++++.+.+.-|++||.-+|+++....                                  
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~----------------------------------  150 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYR----------------------------------  150 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchh----------------------------------
Confidence            5688888865     3678899999999999999999988543211                                  


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                               .||-.             ..-....+++|+|||..|.+|....|++||+..++.....+........+..+
T Consensus       151 ---------~ydh~-------------de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g  208 (406)
T KOG2919|consen  151 ---------AYDHQ-------------DEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG  208 (406)
T ss_pred             ---------hhhhH-------------HhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence                     11111             01113458999999999999999999999995466544333222222245567


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee--
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--  346 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~--  346 (432)
                      .|.+++|+|-.+..+|.|+....+-||.-..+.+    +..+.+|             .+.|+.+.|.+||..|.+|.  
T Consensus       209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p----l~llggh-------------~gGvThL~~~edGn~lfsGaRk  271 (406)
T KOG2919|consen  209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP----LQLLGGH-------------GGGVTHLQWCEDGNKLFSGARK  271 (406)
T ss_pred             eeeeeeccCCCCcceeeecccceeeeEecCCCCc----eeeeccc-------------CCCeeeEEeccCcCeecccccC
Confidence            8999999998867999999999999998777666    5778787             89999999999999999974  


Q ss_pred             CCeEEEEec----CcceeEeecceeeeehhhhhcccccccccc-eeeEEEEeecccceeeeecc
Q 014005          347 YMNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYAL-SCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       347 ~~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~i~~~~~  405 (432)
                      +..|..||+    .++..+..|..         ......++.. .+.-.+++|+.+|.|++|+.
T Consensus       272 ~dkIl~WDiR~~~~pv~~L~rhv~---------~TNQRI~FDld~~~~~LasG~tdG~V~vwdl  326 (406)
T KOG2919|consen  272 DDKILCWDIRYSRDPVYALERHVG---------DTNQRILFDLDPKGEILASGDTDGSVRVWDL  326 (406)
T ss_pred             CCeEEEEeehhccchhhhhhhhcc---------CccceEEEecCCCCceeeccCCCccEEEEec
Confidence            389999999    45555544432         0111111111 13346999999999999994

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1.7e-18  Score=164.38  Aligned_cols=301  Identities=10%  Similarity=0.122  Sum_probs=200.3

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      .-..+.|+|-...+++++..-.|++||.+.++..                           ..|..+.+.         .
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l---------------------------~~F~n~~~~---------~ 1109 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL---------------------------NGFDNGAFP---------D 1109 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCcee---------------------------ccccCCCCC---------C
Confidence            3566889999999999886679999999987643                           233333211         1


Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc---ceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                      ..|+.+.+....|..++++|+.||.|+||+-...   +.+.+.....-.   .......+.. .-+.|.....++++++.
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls---~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd 1185 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLS---DQLPGARGTG-LVVDWQQQSGHLLVTGD 1185 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecccc---ccCccCCCCC-eeeehhhhCCeEEecCC
Confidence            6789999865556678999999999999986432   223332222111   0111111122 44566666566666554


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCc--eeeEeecCCCCcCCC
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDL  266 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~--~~~~~~~~~~~~~~~  266 (432)
                        -..|+|||..   ...+...++.+....++++.-+. .|+.+++| .||.+++||.+....  .+..+       ..|
T Consensus      1186 --~r~IRIWDa~---~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~-------R~h 1253 (1387)
T KOG1517|consen 1186 --VRSIRIWDAH---KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY-------REH 1253 (1387)
T ss_pred             --eeEEEEEecc---cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee-------ccc
Confidence              5799999998   55666655456666777776553 47899999 999999999995443  33333       677


Q ss_pred             Ccc--eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          267 TEV--ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       267 ~~~--v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      +..  |..+.+.+.|-..|++|+.||.|++||+|.... ..... ...|.          +..+..+++..+++...+|+
T Consensus      1254 ~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~-iv~~~----------~yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1254 NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLT-IVAHW----------EYGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred             CCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccce-eeecc----------ccCccceeeeeccCCCeeee
Confidence            776  999999998745699999999999999997421 11111 11110          00235899999999999999


Q ss_pred             eeCCeEEEEec--CcceeEeecceeeeehhhhhcccc--cccccceeeEEEEeecccceeeeec
Q 014005          345 RDYMNLKVFRY--EPVMTLSFCGIYVWILRQLQHSRF--MSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       345 ~~~~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      |+.+.|+||++  +.+..++.++.      ++.....  ..+.+..--..++.|+.|..|.||.
T Consensus      1322 Gs~q~ikIy~~~G~~l~~~k~n~~------F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1322 GSAQLIKIYSLSGEQLNIIKYNPG------FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             cCcceEEEEecChhhhcccccCcc------cccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence            98799999999  66666664432      2211111  1122222222588999999999998

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=6e-18  Score=146.41  Aligned_cols=255  Identities=11%  Similarity=0.051  Sum_probs=172.1

Q ss_pred             cceeEEEEEEc-----CCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCC--cc-----ccccccccccccccccCCC
Q 014005          114 EKINRVRWCAA-----PNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFP--FV-----SSENTLLAEKNFMNEHNPP  180 (432)
Q Consensus       114 ~~v~~l~~~~s-----~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~--~~-----~~~~~~~~~~~i~~~~~~~  180 (432)
                      ..-.|++|+-.     ..|+++|.|+.|..|.|||+.-.. ......+....  ..     -+....-....+..++|+.
T Consensus       174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~  253 (463)
T KOG0270|consen  174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR  253 (463)
T ss_pred             CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc
Confidence            44467777532     136799999999999999985221 11111100000  00     0000001125667788877


Q ss_pred             CC-cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEee
Q 014005          181 SF-AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVD  257 (432)
Q Consensus       181 ~~-~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~  257 (432)
                      .. ..+++|+.  |.+|++||+.   +++|.+++ ..|.+.|.++.|+|. ..+|++| .|+++.+.|.+.....-..+ 
T Consensus       254 ~~~nVLaSgsa--D~TV~lWD~~---~g~p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-  326 (463)
T KOG0270|consen  254 NFRNVLASGSA--DKTVKLWDVD---TGKPKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-  326 (463)
T ss_pred             ccceeEEecCC--CceEEEEEcC---CCCcceeh-hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-
Confidence            64 45566666  9999999999   89999999 789999999999996 5567788 99999999999433222222 


Q ss_pred             cCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC
Q 014005          258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (432)
Q Consensus       258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~  337 (432)
                             ...+.|-.++|+|..+..++++..||+++-+|+|....+   +.+++.|             .++|+++++++
T Consensus       327 -------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~---vwt~~AH-------------d~~ISgl~~n~  383 (463)
T KOG0270|consen  327 -------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP---VWTLKAH-------------DDEISGLSVNI  383 (463)
T ss_pred             -------EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc---eeEEEec-------------cCCcceEEecC
Confidence                   234679999999998888999999999999999986433   6888887             89999999998


Q ss_pred             CCC-EEEEe-eCCeEEEEec--CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          338 DGQ-HLLSR-DYMNLKVFRY--EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       338 dg~-~l~s~-~~~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      .-. +|+++ .++.+++|++  ..-+....|..       -...-.|.....+..+.++.|...+.++||+.
T Consensus       384 ~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~-------~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  384 QTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF-------KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI  448 (463)
T ss_pred             CCCcceeeccccceEEEEeecCCCCcccccccc-------cccceeecccCCCcceEEEecCccceEEEeec
Confidence            755 45555 5599999999  22222222221       00112222223344556777777789999994

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.5e-18  Score=160.27  Aligned_cols=244  Identities=14%  Similarity=0.156  Sum_probs=179.5

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      ...+.|+|  .++|+.+++++.||.|++|+.....- .......+.           ..+.+++  ....++++++.  +
T Consensus        14 ~G~t~i~~--d~~gefi~tcgsdg~ir~~~~~sd~e-~P~ti~~~g-----------~~v~~ia--~~s~~f~~~s~--~   75 (933)
T KOG1274|consen   14 GGLTLICY--DPDGEFICTCGSDGDIRKWKTNSDEE-EPETIDISG-----------ELVSSIA--CYSNHFLTGSE--Q   75 (933)
T ss_pred             CceEEEEE--cCCCCEEEEecCCCceEEeecCCccc-CCchhhccC-----------ceeEEEe--ecccceEEeec--c
Confidence            77889999  89999999999999999999765420 100010011           2333333  34447888888  9


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (432)
                      +.|.+|.+........+..|    +-++++++++-+|.++|.| +|-.|++-++. .......+       .+|.++|.+
T Consensus        76 ~tv~~y~fps~~~~~iL~Rf----tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~-D~s~~~~l-------rgh~apVl~  143 (933)
T KOG1274|consen   76 NTVLRYKFPSGEEDTILARF----TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD-DSSQEKVL-------RGHDAPVLQ  143 (933)
T ss_pred             ceEEEeeCCCCCccceeeee----eccceEEEEecCCcEEEeecCceeEEEEecc-ccchheee-------cccCCceee
Confidence            99999998855444444444    4589999999999999999 99999999998 34444443       899999999


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC-CCEEEEeeCCeEE
Q 014005          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDYMNLK  351 (432)
Q Consensus       273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~s~~~~~i~  351 (432)
                      +.|+|.+ ++||+.+.||.|++||+.++..    ...+.+ .. +....   +....+..++|+|+ |.+++.+.+++|+
T Consensus       144 l~~~p~~-~fLAvss~dG~v~iw~~~~~~~----~~tl~~-v~-k~n~~---~~s~i~~~~aW~Pk~g~la~~~~d~~Vk  213 (933)
T KOG1274|consen  144 LSYDPKG-NFLAVSSCDGKVQIWDLQDGIL----SKTLTG-VD-KDNEF---ILSRICTRLAWHPKGGTLAVPPVDNTVK  213 (933)
T ss_pred             eeEcCCC-CEEEEEecCceEEEEEcccchh----hhhccc-CC-ccccc---cccceeeeeeecCCCCeEEeeccCCeEE
Confidence            9999999 9999999999999999998875    344443 10 00000   01356788999999 5566668889999


Q ss_pred             EEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005          352 VFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       352 iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                      +|+.   .+...++...         ..+.++.+....|..|++++..+|.|.||+..
T Consensus       214 vy~r~~we~~f~Lr~~~---------~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  214 VYSRKGWELQFKLRDKL---------SSSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             EEccCCceeheeecccc---------cccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence            9999   4545554433         24457777777788899999999999999943

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.82  E-value=9.6e-19  Score=157.68  Aligned_cols=271  Identities=11%  Similarity=0.093  Sum_probs=181.1

Q ss_pred             CCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCC
Q 014005           22 ERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE  101 (432)
Q Consensus        22 ~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~  101 (432)
                      ++.....+.|...|..+.|-|....|++++.|.++++||+++.+..                         -...+.||+
T Consensus        90 e~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~-------------------------G~~~~~GH~  144 (720)
T KOG0321|consen   90 ERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV-------------------------GGRLNLGHT  144 (720)
T ss_pred             hhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee-------------------------cceeecccc
Confidence            3445667889999999999996668999999999999999987644                         112478999


Q ss_pred             ccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeee--------ecCCC-Ccccccccc-----
Q 014005          102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK--------EMDHF-PFVSSENTL-----  167 (432)
Q Consensus       102 ~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~~~~-~~~~~~~~~-----  167 (432)
                                  ..|-+++|.| .|...|++|+.||.|.|||+.-.....+.        .++.. .+.....+-     
T Consensus       145 ------------~SvkS~cf~~-~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k  211 (720)
T KOG0321|consen  145 ------------GSVKSECFMP-TNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK  211 (720)
T ss_pred             ------------cccchhhhcc-CCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence                        9999999953 34567999999999999999643311111        11110 000000000     


Q ss_pred             cccccccc---ccCCCCCcceecceeeccceEEEEeecccccc---eeeEEee-cCC---CCCeeEEEeCCCCCEEEEE-
Q 014005          168 LAEKNFMN---EHNPPSFAHGYHLEWTENMATKIANVGNSVHA---RCQKVYP-HAH---DFNINSISNNSDCETFVSA-  236 (432)
Q Consensus       168 ~~~~~i~~---~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~---~~~~~~~-~~~---~~~i~~~~~~~~~~~l~~~-  236 (432)
                      ..+..|..   +.+..|...+++++. +|+.+++||++.....   .+..... ..|   ...+.++.....|.+|.+. 
T Consensus       212 A~s~ti~ssvTvv~fkDe~tlaSaga-~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC  290 (720)
T KOG0321|consen  212 AASNTIFSSVTVVLFKDESTLASAGA-ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC  290 (720)
T ss_pred             cccCceeeeeEEEEEeccceeeeccC-CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence            11223333   334455556665554 5999999999854221   1111110 122   3357788888888888877 


Q ss_pred             cCCeEEEEeCCCCCce-eeEeecCCCCcCCCCc--ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccc
Q 014005          237 DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA  313 (432)
Q Consensus       237 ~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h  313 (432)
                      .|+.|++|++..-+.. ...+       .++..  .-..-..+|++ .++++|+.|....+|.+.+-+..   ...+.+|
T Consensus       291 tD~sIy~ynm~s~s~sP~~~~-------sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~~---~~~l~Gh  359 (720)
T KOG0321|consen  291 TDNSIYFYNMRSLSISPVAEF-------SGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEAP---PALLLGH  359 (720)
T ss_pred             cCCcEEEEeccccCcCchhhc-------cCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCccCC---hhhhhCc
Confidence            9999999999833221 1111       22211  12234578999 99999999999999999876543   4667776


Q ss_pred             ccccCCccceeeeecceeEEEEcCC--CCEEEEeeCCeEEEEec
Q 014005          314 AESHGSKSFFTEIIASISDIKFAND--GQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       314 ~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l~s~~~~~i~iwd~  355 (432)
                                   .-.|+.++|.|.  +..+++.+|.++++|++
T Consensus       360 -------------t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  360 -------------TREVTTVRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             -------------ceEEEEEeeccccCCCceeeccCcceEEEec
Confidence                         788999999884  55555556699999999

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.82  E-value=2.3e-17  Score=153.26  Aligned_cols=304  Identities=13%  Similarity=0.126  Sum_probs=210.6

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .+.+.|+++.=+|-=+.+|.|..+|+|.|+++..++.+                           .+|+...        
T Consensus       200 ~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil---------------------------~sFk~d~--------  244 (910)
T KOG1539|consen  200 EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL---------------------------MSFKQDW--------  244 (910)
T ss_pred             ccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE---------------------------EEEEccc--------
Confidence            45679999999999999999999999999999998754                           6666555        


Q ss_pred             hhhhcceeEEEEEEcCCCCE-EEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          110 LEIEEKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                          +.|++++|  ..||+. +++|+..|.+.+||++..++..... +.|.           +.+....|-+....+++.
T Consensus       245 ----g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~-nah~-----------~sv~~~~fl~~epVl~ta  306 (910)
T KOG1539|consen  245 ----GRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTR-NAHY-----------GSVTGATFLPGEPVLVTA  306 (910)
T ss_pred             ----cceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeee-cccc-----------CCcccceecCCCceEeec
Confidence                89999999  888875 5666777999999999877443322 2223           678888888888888888


Q ss_pred             eeeccceEEEEeecccc-cceeeEEeecCCCCCeeEEEeC-CCCCEEEEE-cCCeEEEEeCCC-----------------
Q 014005          189 EWTENMATKIANVGNSV-HARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEI-----------------  248 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~-~d~~i~lwd~~~-----------------  248 (432)
                      +.  |+.+++|-.+.+. ..+.++.- .+|..+..+++|. .+|..+.++ .|++.+.+++..                 
T Consensus       307 ~~--DnSlk~~vfD~~dg~pR~LR~R-~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k  383 (910)
T KOG1539|consen  307 GA--DNSLKVWVFDSGDGVPRLLRSR-GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK  383 (910)
T ss_pred             cC--CCceeEEEeeCCCCcchheeec-cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence            87  8888888665321 22333433 7888888888887 567666666 777766665510                 


Q ss_pred             ------------------------------------CCceeeEee----------cCCCCcCCCCcceEEEEEcCCCCcE
Q 014005          249 ------------------------------------SDQCFNIVD----------MKPSNMDDLTEVITSAEFHPIYCNL  282 (432)
Q Consensus       249 ------------------------------------~~~~~~~~~----------~~~~~~~~~~~~v~~~~~~p~~~~~  282 (432)
                                                          ......+++          +++..+......+++++.++.| ++
T Consensus       384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF  462 (910)
T KOG1539|consen  384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NF  462 (910)
T ss_pred             cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ce
Confidence                                                000001111          1111222234678999999999 99


Q ss_pred             EEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec---Ccc
Q 014005          283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY---EPV  358 (432)
Q Consensus       283 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~  358 (432)
                      .+.|...|.|-+|++++|-.    ...|...          ..|..+|++++...-++.++++ .+|.+++||.   .++
T Consensus       463 ~~IG~S~G~Id~fNmQSGi~----r~sf~~~----------~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  463 VFIGYSKGTIDRFNMQSGIH----RKSFGDS----------PAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             EEEeccCCeEEEEEcccCee----ecccccC----------ccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            99999999999999999865    4555310          1138899999999999999986 4599999999   222


Q ss_pred             eeEeecceee--------------------ee---------hhhh-hcccccccccceeeEEEEeecccceeeeec
Q 014005          359 MTLSFCGIYV--------------------WI---------LRQL-QHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       359 ~~~~~~~~~~--------------------~~---------~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      ..++...+..                    .+         +.+. +..++.++.++...-.+++.+.|++|++||
T Consensus       529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD  604 (910)
T KOG1539|consen  529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD  604 (910)
T ss_pred             eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence            3332211100                    00         0111 223444444444444799999999999999

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.81  E-value=1.9e-18  Score=141.58  Aligned_cols=212  Identities=14%  Similarity=0.169  Sum_probs=148.9

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCC-------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          114 EKINRVRWCAAPNGSMFILSTND-------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                      +.|..|+-+| .+.+.|+++-.+       -.+.||.+......  .....-..++.+.+ ..-+.+.++.|.|++..++
T Consensus        64 gEvw~las~P-~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~--S~~~tlE~v~~Ldt-eavg~i~cvew~Pns~kla  139 (370)
T KOG1007|consen   64 GEVWDLASSP-FDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ--SNSSTLECVASLDT-EAVGKINCVEWEPNSDKLA  139 (370)
T ss_pred             cceehhhcCC-CCCceEEEEEeccCCCcceeeEEEEecccccCc--cccchhhHhhcCCH-HHhCceeeEEEcCCCCeeE
Confidence            8899998843 344455555331       35789998643211  00000000111111 1225889999999988887


Q ss_pred             cceeeccceEEEEeecccccc-eeeE-EeecCCCCCeeEEEeCC--CCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCC
Q 014005          187 HLEWTENMATKIANVGNSVHA-RCQK-VYPHAHDFNINSISNNS--DCETFVSADDLRINLWNLEISDQCFNIVDMKPSN  262 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~-~~~~-~~~~~~~~~i~~~~~~~--~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (432)
                      ...   +..|.+|++....+. ..+. ....++....++-+|+|  +++.+++..|+++..||+++..+...+-      
T Consensus       140 sm~---dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~------  210 (370)
T KOG1007|consen  140 SMD---DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIE------  210 (370)
T ss_pred             Eec---cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchh------
Confidence            765   789999999864331 1111 11134566788889998  6888888899999999999555444332      


Q ss_pred             cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC-CCE
Q 014005          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQH  341 (432)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d-g~~  341 (432)
                       ..|...|+.+.|+|+...+|++|+.||.|+|||.|.-+.+   ++.+.+|             ..+|+++.|+|. .++
T Consensus       211 -dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p---v~el~~H-------------sHWvW~VRfn~~hdqL  273 (370)
T KOG1007|consen  211 -DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP---VQELPGH-------------SHWVWAVRFNPEHDQL  273 (370)
T ss_pred             -hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc---ccccCCC-------------ceEEEEEEecCccceE
Confidence             7888899999999998678999999999999999976654   6788887             889999999996 456


Q ss_pred             EEEe-eCCeEEEEec
Q 014005          342 LLSR-DYMNLKVFRY  355 (432)
Q Consensus       342 l~s~-~~~~i~iwd~  355 (432)
                      |++| +|..|.+|-.
T Consensus       274 iLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  274 ILSGGSDSAVNLSCA  288 (370)
T ss_pred             EEecCCCceeEEEec
Confidence            6675 6799999977

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.8e-18  Score=142.44  Aligned_cols=212  Identities=15%  Similarity=0.195  Sum_probs=154.9

Q ss_pred             eeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCccee--eeeecCCCCccccccccccccc
Q 014005           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK--KIKEMDHFPFVSSENTLLAEKN  172 (432)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  172 (432)
                      ..+++|.            +.|++++|  +.||++|++++.|+.|++|+++.-..+  +....+...           +-
T Consensus        80 ~~LKgH~------------~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~-----------dh  134 (420)
T KOG2096|consen   80 SVLKGHK------------KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY-----------DH  134 (420)
T ss_pred             hhhhccC------------CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC-----------CC
Confidence            4678888            99999999  899999999999999999999764321  111111111           34


Q ss_pred             cccccCCCCCcceecceeeccceEEEEeecccccceeeE--------EeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEE
Q 014005          173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQK--------VYPHAHDFNINSISNNSDCETFVSA-DDLRINL  243 (432)
Q Consensus       173 i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~l  243 (432)
                      .+.+.|.|+..-++.... ....+++|.+.....+....        .+...|.-.+..+-...++.+++++ .|..|.+
T Consensus       135 pT~V~FapDc~s~vv~~~-~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~l  213 (420)
T KOG2096|consen  135 PTRVVFAPDCKSVVVSVK-RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICL  213 (420)
T ss_pred             ceEEEECCCcceEEEEEc-cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEE
Confidence            567889999776555443 26688888765432222111        1224456667777777888999999 9999999


Q ss_pred             EeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccc---cc-cccceeecccccccCC
Q 014005          244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA---LC-DHSARILRDAAESHGS  319 (432)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~---~~-~~~~~~~~~h~~~~~~  319 (432)
                      |+++  ++.+..+       ......-...+.||+| +++|+++..-.|++|.+--++   .. ......+.+|      
T Consensus       214 w~lk--Gq~L~~i-------dtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH------  277 (420)
T KOG2096|consen  214 WDLK--GQLLQSI-------DTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH------  277 (420)
T ss_pred             EecC--Cceeeee-------ccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc------
Confidence            9999  7777766       4444455678999999 999999999999999865322   10 0113456666      


Q ss_pred             ccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          320 KSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       320 ~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                             ...|..++||++.+.+++. -||++++||+
T Consensus       278 -------~saV~~~aFsn~S~r~vtvSkDG~wriwdt  307 (420)
T KOG2096|consen  278 -------QSAVLAAAFSNSSTRAVTVSKDGKWRIWDT  307 (420)
T ss_pred             -------hhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence                   8999999999999999996 5599999999

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.81  E-value=4.2e-18  Score=154.38  Aligned_cols=248  Identities=13%  Similarity=0.160  Sum_probs=184.4

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      .|..++|.|||..|+.+..+ .+.+||.+.+...                           +++++|+            
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~ll---------------------------qtLKgHK------------   53 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLL---------------------------QPLKGHK------------   53 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCcccc---------------------------ccccccc------------
Confidence            78999999999988776544 7999999988755                           7899999            


Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceee--------eeecCC---C-------------Ccccccccccc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK--------IKEMDH---F-------------PFVSSENTLLA  169 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~--------~~~~~~---~-------------~~~~~~~~~~~  169 (432)
                      +.|++++|  +.||+.|++|+.|+.|.+|.-+-....+        ...++.   +             +...++.+...
T Consensus        54 DtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~ks  131 (1081)
T KOG1538|consen   54 DTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKS  131 (1081)
T ss_pred             ceEEEEEE--ccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhh
Confidence            99999999  8999999999999999999865321111        001110   0             00114555566


Q ss_pred             ccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC-----CEEEEE-cCCeEEE
Q 014005          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-----ETFVSA-DDLRINL  243 (432)
Q Consensus       170 ~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~~~-~d~~i~l  243 (432)
                      ...+.+++|..+|.+++.|..  +|+|.+-+-.........+  +.+..++|.+++|+|..     ..+++. ...++..
T Consensus       132 s~R~~~CsWtnDGqylalG~~--nGTIsiRNk~gEek~~I~R--pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSF  207 (1081)
T KOG1538|consen  132 SSRIICCSWTNDGQYLALGMF--NGTISIRNKNGEEKVKIER--PGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSF  207 (1081)
T ss_pred             heeEEEeeecCCCcEEEEecc--CceEEeecCCCCcceEEeC--CCCCCCCceEEEecCCCCCCccceEEEEeccceeEE
Confidence            778889999999999999998  9999998765432222222  24677899999999963     356666 6778888


Q ss_pred             EeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005          244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (432)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~  323 (432)
                      +.+.  ++.+..       -....-...++.+.|+| .+++.|+.|+.+++|--. |-.    +.++...          
T Consensus       208 y~Ls--G~~Igk-------~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~-Gvr----LGTvg~~----------  262 (1081)
T KOG1538|consen  208 YQLS--GKQIGK-------DRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRD-GVR----LGTVGEQ----------  262 (1081)
T ss_pred             EEec--ceeecc-------cccCCCCchhheeccCC-cEEEEccCCCceEEEeec-CeE----Eeecccc----------
Confidence            8777  433321       02233346789999999 999999999999999844 433    3444432          


Q ss_pred             eeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          324 TEIIASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       324 ~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                         ..+|+.++..|++++.+.| .||+|..|++
T Consensus       263 ---D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  263 ---DSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             ---ceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence               6799999999999999987 6699999999

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.6e-17  Score=150.89  Aligned_cols=243  Identities=11%  Similarity=0.074  Sum_probs=172.2

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      ..|.+++|  +.+.+.||.+-.||.|.+|++..+=.... .+.++.          +..|..++|.+.++++..+.   +
T Consensus        26 s~I~slA~--s~kS~~lAvsRt~g~IEiwN~~~~w~~~~-vi~g~~----------drsIE~L~W~e~~RLFS~g~---s   89 (691)
T KOG2048|consen   26 SEIVSLAY--SHKSNQLAVSRTDGNIEIWNLSNNWFLEP-VIHGPE----------DRSIESLAWAEGGRLFSSGL---S   89 (691)
T ss_pred             cceEEEEE--eccCCceeeeccCCcEEEEccCCCceeeE-EEecCC----------CCceeeEEEccCCeEEeecC---C
Confidence            78999999  77888899999999999999987532222 122222          47899999996666555544   8


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (432)
                      |.|.-||+.   +.+.+..+ ....+.|++++.+|.+..++.| +||.+..++.. .+......     .+....+.|.+
T Consensus        90 g~i~EwDl~---~lk~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~-p~~I~~~r-----~l~rq~sRvLs  159 (691)
T KOG2048|consen   90 GSITEWDLH---TLKQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG-PDKITYKR-----SLMRQKSRVLS  159 (691)
T ss_pred             ceEEEEecc---cCceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEEecC-CceEEEEe-----ecccccceEEE
Confidence            999999999   77777777 7788899999999999999999 99988888877 44332211     23445688999


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEE
Q 014005          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK  351 (432)
Q Consensus       273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~  351 (432)
                      +.|+|++ ..++.|+.||.|++||..++...    .............     -..-|+++.|-.++ .|++|+. |+|.
T Consensus       160 lsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~----~~~~~~~d~l~k~-----~~~iVWSv~~Lrd~-tI~sgDS~G~V~  228 (691)
T KOG2048|consen  160 LSWNPTG-TKIAGGSIDGVIRIWDVKSGQTL----HIITMQLDRLSKR-----EPTIVWSVLFLRDS-TIASGDSAGTVT  228 (691)
T ss_pred             EEecCCc-cEEEecccCceEEEEEcCCCceE----EEeeecccccccC-----CceEEEEEEEeecC-cEEEecCCceEE
Confidence            9999999 88999999999999999987752    2111100000000     02357888888666 6788866 9999


Q ss_pred             EEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          352 VFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       352 iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      +||-   ..++.+..|..           .+..+...+..-.++++..|+.+.-|.
T Consensus       229 FWd~~~gTLiqS~~~h~a-----------dVl~Lav~~~~d~vfsaGvd~~ii~~~  273 (691)
T KOG2048|consen  229 FWDSIFGTLIQSHSCHDA-----------DVLALAVADNEDRVFSAGVDPKIIQYS  273 (691)
T ss_pred             EEcccCcchhhhhhhhhc-----------ceeEEEEcCCCCeEEEccCCCceEEEE
Confidence            9999   66666666653           222222222223456666677666665

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.80  E-value=5.1e-18  Score=141.15  Aligned_cols=240  Identities=13%  Similarity=0.181  Sum_probs=172.6

Q ss_pred             CCcEEEEEEc-------CCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeec--CCc
Q 014005           32 VDIVSAIEFD-------KTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS--HEP  102 (432)
Q Consensus        32 ~~~V~~~~fs-------p~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--h~~  102 (432)
                      .+.|....|-       |+-.++|+.+.+.-|++||.-++++-                           ..+.+  |..
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lr---------------------------aSy~~ydh~d  156 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLR---------------------------ASYRAYDHQD  156 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccc---------------------------cchhhhhhHH
Confidence            4567776664       66778999999999999999888743                           22222  221


Q ss_pred             cccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEc-cCcceeeeeecCCCCccccccccccccccccccCCCC
Q 014005          103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (432)
Q Consensus       103 ~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  181 (432)
                      ++         ..-.+++|  +|||.+|+.|- .+.|+++|+ +.|.-........+      .+.-..+.+.+++|+|.
T Consensus       157 e~---------taAhsL~F--s~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~------~k~gq~giisc~a~sP~  218 (406)
T KOG2919|consen  157 EY---------TAAHSLQF--SPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTK------GKFGQKGIISCFAFSPM  218 (406)
T ss_pred             hh---------hhheeEEe--cCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhc------ccccccceeeeeeccCC
Confidence            11         34568999  99999988774 588999999 44431111100000      01112367888999997


Q ss_pred             Cc-ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeec
Q 014005          182 FA-HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDM  258 (432)
Q Consensus       182 ~~-~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~  258 (432)
                      .. .++.++.  ...+-||.-.   ...++..+ .+|.+.|+.++|.++|+.|.+|  .|..|..||++.....+..+  
T Consensus       219 ~~~~~a~gsY--~q~~giy~~~---~~~pl~ll-ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L--  290 (406)
T KOG2919|consen  219 DSKTLAVGSY--GQRVGIYNDD---GRRPLQLL-GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL--  290 (406)
T ss_pred             CCcceeeecc--cceeeeEecC---CCCceeee-cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh--
Confidence            65 7788887  6777777766   66788888 7999999999999999999998  69999999999666655543  


Q ss_pred             CCCCcCCCCc-ceEEE--EEcCCCCcEEEEEeCCCeEEEEEccc-cccccccceeecccccccCCccceeeeecceeEEE
Q 014005          259 KPSNMDDLTE-VITSA--EFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIK  334 (432)
Q Consensus       259 ~~~~~~~~~~-~v~~~--~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~  334 (432)
                           ..|.. .-..|  ...|++ ++|++|+.||.|++||+.+ +..    ...+..|             ...++.++
T Consensus       291 -----~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~gn~----~sv~~~~-------------sd~vNgvs  347 (406)
T KOG2919|consen  291 -----ERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLGNE----VSVTGNY-------------SDTVNGVS  347 (406)
T ss_pred             -----hhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCCCc----ccccccc-------------ccccccee
Confidence                 44433 22233  456888 9999999999999999987 443    3555554             78899999


Q ss_pred             EcCCCCEEEEeeC
Q 014005          335 FANDGQHLLSRDY  347 (432)
Q Consensus       335 ~s~dg~~l~s~~~  347 (432)
                      ++|--.++|+++-
T Consensus       348 lnP~mpilatssG  360 (406)
T KOG2919|consen  348 LNPIMPILATSSG  360 (406)
T ss_pred             cCcccceeeeccC
Confidence            9999888888763

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.80  E-value=1.2e-17  Score=139.28  Aligned_cols=317  Identities=14%  Similarity=0.149  Sum_probs=200.6

Q ss_pred             cchhhhhhhhcCCCCCccccCCCcEEEEEEcC-----CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005           11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDK-----TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS   85 (432)
Q Consensus        11 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp-----~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (432)
                      ...+|+.....       ..|+.+|..++|++     .-+.+|+++.+ .+.||........                  
T Consensus        24 k~~yk~t~~l~-------ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i------------------   77 (385)
T KOG1034|consen   24 KRSYKYTNHLK-------EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI------------------   77 (385)
T ss_pred             ccceEeeeehh-------ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce------------------
Confidence            45555554433       45778999999985     23467777664 7899987664311                  


Q ss_pred             cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCC--CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccc
Q 014005           86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS  163 (432)
Q Consensus        86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  163 (432)
                            +.++.+...          ++++....++|+-..+  ..+++.|+.-|.|++.|+.++++..  .+..|.    
T Consensus        78 ------r~lq~y~D~----------d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~--~~~ghG----  135 (385)
T KOG1034|consen   78 ------RLLQSYADE----------DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK--NYRGHG----  135 (385)
T ss_pred             ------eeeeeccCC----------CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc--ceeccC----
Confidence                  122222221          1126777888843222  4578888999999999999887433  333444    


Q ss_pred             ccccccccccccccCCCCC-cceecceeeccceEEEEeecccccceeeEEe--ecCCCCCeeEEEeCCCCCEEEEE-cCC
Q 014005          164 ENTLLAEKNFMNEHNPPSF-AHGYHLEWTENMATKIANVGNSVHARCQKVY--PHAHDFNINSISNNSDCETFVSA-DDL  239 (432)
Q Consensus       164 ~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~-~d~  239 (432)
                             +.|..+.+.|+. +++++++.  |..|++|+++   +..|+..+  -.+|.+.|.++.|+++|.+++++ .|.
T Consensus       136 -------~sINeik~~p~~~qlvls~Sk--D~svRlwnI~---~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh  203 (385)
T KOG1034|consen  136 -------GSINEIKFHPDRPQLVLSASK--DHSVRLWNIQ---TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH  203 (385)
T ss_pred             -------ccchhhhcCCCCCcEEEEecC--CceEEEEecc---CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcc
Confidence                   789999999986 56667777  9999999999   88898887  25799999999999999999998 999


Q ss_pred             eEEEEeCCCCCceeeEeec------C-------------CC--CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005          240 RINLWNLEISDQCFNIVDM------K-------------PS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  298 (432)
Q Consensus       240 ~i~lwd~~~~~~~~~~~~~------~-------------~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~  298 (432)
                      ++++|++.. .+....++.      +             |.  +..-|...|-|+.|-  | .++++-+-++.|..|..-
T Consensus       204 slk~W~l~~-~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pg  279 (385)
T KOG1034|consen  204 SLKLWRLNV-KEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPG  279 (385)
T ss_pred             eEEEEecCh-hHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h-hheeecccCceEEEEecc
Confidence            999999972 111110000      0             00  224466777777775  4 678888889999999873


Q ss_pred             ccccccccceeecccccccCC-ccceeeeecceeEEE--EcCCCCEEEEeeC-CeEEEEec---Ccc--eeEeecceeee
Q 014005          299 QSALCDHSARILRDAAESHGS-KSFFTEIIASISDIK--FANDGQHLLSRDY-MNLKVFRY---EPV--MTLSFCGIYVW  369 (432)
Q Consensus       299 ~~~~~~~~~~~~~~h~~~~~~-~~~~~~~~~~v~~~~--~s~dg~~l~s~~~-~~i~iwd~---~~~--~~~~~~~~~~~  369 (432)
                      .-+..   +..... +++... ...+.-....|+-+.  |.|-+++||.|.. |.+.+||+   ++.  .++.-+..   
T Consensus       280 kl~e~---~~~vkp-~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~---  352 (385)
T KOG1034|consen  280 KLEES---IHNVKP-PESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKS---  352 (385)
T ss_pred             hhhhh---hhccCC-CccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccc---
Confidence            21110   010000 000000 000111134455554  4566899999977 99999999   221  12221111   


Q ss_pred             ehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          370 ILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                            ...+....+..+...++..+.|+.|.-|+
T Consensus       353 ------~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  353 ------GSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             ------cceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence                  12233333444555677778899999887

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=7.1e-18  Score=139.38  Aligned_cols=236  Identities=12%  Similarity=0.100  Sum_probs=158.7

Q ss_pred             ccCCCcEEEEEEcC--CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           29 LQDVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        29 ~~h~~~V~~~~fsp--~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      -.|.+.|..+.|.+  -|+.+|+++.|++++||.-......           .++.       .+....++....     
T Consensus        56 rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~-----------~~~~-------~Wv~~ttl~Dsr-----  112 (361)
T KOG2445|consen   56 RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEE-----------AHGR-------RWVRRTTLVDSR-----  112 (361)
T ss_pred             EecCCcEEEEEecCccccceEEEEecCCceeeeeecccccc-----------cccc-------eeEEEEEeecCC-----
Confidence            37889999999975  5899999999999999986422210           1110       234445666555     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccc--ccccccccccCCCC---
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL--LAEKNFMNEHNPPS---  181 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~---  181 (432)
                             ..|+++.|+|..-|-+|++++.||.++||+.-...  .+...+...++..+.-.  .......++.|++.   
T Consensus       113 -------ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~--nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~  183 (361)
T KOG2445|consen  113 -------SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM--NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMH  183 (361)
T ss_pred             -------cceeEEEecchhcceEEEEeccCcEEEEEecCCcc--ccccchhhhhhhhccCCcccccCcceEEeecccccc
Confidence                   89999999887789899999999999999875432  11111100000000000  11245567778765   


Q ss_pred             Ccceecceeec---cceEEEEeecccc-cceeeEEeecCCCCCeeEEEeCCC----CCEEEEE-cCCeEEEEeCCCCCc-
Q 014005          182 FAHGYHLEWTE---NMATKIANVGNSV-HARCQKVYPHAHDFNINSISNNSD----CETFVSA-DDLRINLWNLEISDQ-  251 (432)
Q Consensus       182 ~~~~~~~~~~~---~~~v~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~-~d~~i~lwd~~~~~~-  251 (432)
                      ..+++.|+...   -+.++||...... ....+..+ .+|+..|++++|.|+    -..+|++ .|| |+||.+..... 
T Consensus       184 ~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L-~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~  261 (361)
T KOG2445|consen  184 EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL-PDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSA  261 (361)
T ss_pred             CceEEEEcccCCccccceEEEEecCCcceeeeehhc-CCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccch
Confidence            34666666421   3488899876542 33344456 689999999999996    2367888 899 99999872110 


Q ss_pred             ----------eeeEeec-CCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005          252 ----------CFNIVDM-KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (432)
Q Consensus       252 ----------~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~  299 (432)
                                ....+++ +...+.+|.+.|+.+.|+-.| .+|++.+.||.||+|...-
T Consensus       262 i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  262 IEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             hhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehhhhh
Confidence                      0111111 112457899999999999999 9999999999999998664

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=8.4e-17  Score=128.83  Aligned_cols=230  Identities=14%  Similarity=0.119  Sum_probs=159.6

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      .|.+-+++|.+++|++|..+|+|-+..++.....     +            +..|....+..+++|+            
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-----s------------a~~~gk~~iv~eqahd------------   62 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-----S------------AEPPGKLKIVPEQAHD------------   62 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-----c------------cCCCCCcceeeccccC------------
Confidence            4566789999999999999999999998753211     0            0112233445668998            


Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      ++|+.++|  .  ..+|++|+ ||.|+-|..+.....                                          .
T Consensus        63 gpiy~~~f--~--d~~Lls~g-dG~V~gw~W~E~~es------------------------------------------~   95 (325)
T KOG0649|consen   63 GPIYYLAF--H--DDFLLSGG-DGLVYGWEWNEEEES------------------------------------------L   95 (325)
T ss_pred             CCeeeeee--e--hhheeecc-CceEEEeeehhhhhh------------------------------------------c
Confidence            99999999  3  34566665 699999987643210                                          1


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (432)
                      +.-++|.+..     +.++- .-.-..|+++...|..+.++.+ .|+.++.||++ +++..+.+       .+|+..|.+
T Consensus        96 ~~K~lwe~~~-----P~~~~-~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE-~G~i~r~~-------rGHtDYvH~  161 (325)
T KOG0649|consen   96 ATKRLWEVKI-----PMQVD-AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE-DGRIQREY-------RGHTDYVHS  161 (325)
T ss_pred             cchhhhhhcC-----ccccC-cccCCccceeEeccCCCcEEEecCCeEEEEEEec-CCEEEEEE-------cCCcceeee
Confidence            1112333321     11110 1123479999999987777766 99999999999 78877776       999999999


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc--cccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeE
Q 014005          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD--AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL  350 (432)
Q Consensus       273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i  350 (432)
                      +.--..+ ..+++|++||++|+||.++++.    ++.++.  |++...     +....+|.+++-+  ..+|++|....+
T Consensus       162 vv~R~~~-~qilsG~EDGtvRvWd~kt~k~----v~~ie~yk~~~~lR-----p~~g~wigala~~--edWlvCGgGp~l  229 (325)
T KOG0649|consen  162 VVGRNAN-GQILSGAEDGTVRVWDTKTQKH----VSMIEPYKNPNLLR-----PDWGKWIGALAVN--EDWLVCGGGPKL  229 (325)
T ss_pred             eeecccC-cceeecCCCccEEEEeccccce----eEEeccccChhhcC-----cccCceeEEEecc--CceEEecCCCce
Confidence            9985555 5788999999999999999875    344432  111100     0114567777665  459999887899


Q ss_pred             EEEec---CcceeEeecc
Q 014005          351 KVFRY---EPVMTLSFCG  365 (432)
Q Consensus       351 ~iwd~---~~~~~~~~~~  365 (432)
                      .+|.+   ++...+.++.
T Consensus       230 slwhLrsse~t~vfpipa  247 (325)
T KOG0649|consen  230 SLWHLRSSESTCVFPIPA  247 (325)
T ss_pred             eEEeccCCCceEEEeccc
Confidence            99999   6777777665

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=4.1e-19  Score=164.61  Aligned_cols=244  Identities=17%  Similarity=0.261  Sum_probs=180.3

Q ss_pred             ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      ..+.|.++|+|+.|+..|.++++|+.|..++||..++..                           +.....||.     
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~---------------------------~lAs~rGhs-----  232 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR---------------------------CLASCRGHS-----  232 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchh---------------------------hhccCCCCc-----
Confidence            456789999999999999999999999999999988876                           447899999     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                             +.|+.++.  +.+..++++++.|..|++|.+..+.  .+..+.+|.           +.|++++|+|-.    
T Consensus       233 -------~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~~~--pvsvLrght-----------gavtaiafsP~~----  286 (1113)
T KOG0644|consen  233 -------GDITDLAV--SSNNTMIAAASNDKVIRVWRLPDGA--PVSVLRGHT-----------GAVTAIAFSPRA----  286 (1113)
T ss_pred             -------cccchhcc--chhhhhhhhcccCceEEEEecCCCc--hHHHHhccc-----------cceeeeccCccc----
Confidence                   99999999  7788889999999999999999887  344455666           899999999976    


Q ss_pred             cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-----------------------------------
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-----------------------------------  231 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------------------------------  231 (432)
                        +..+||++++||.+-......-+.........+.++.|..++.                                   
T Consensus       287 --sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~  364 (1113)
T KOG0644|consen  287 --SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDL  364 (1113)
T ss_pred             --cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccc
Confidence              2233999999998721110000000000111122222222222                                   


Q ss_pred             --EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccce
Q 014005          232 --TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  308 (432)
Q Consensus       232 --~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  308 (432)
                        +.+++ .+-.+++|++. .++..+..       .+|...+..+.+||-++.+..+++.||...|||+-.|...   ..
T Consensus       365 ~~~~~~ar~~~~~~vwnl~-~g~l~H~l-------~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi---k~  433 (1113)
T KOG0644|consen  365 SSIVVTARNDHRLCVWNLY-TGQLLHNL-------MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI---KH  433 (1113)
T ss_pred             cccceeeeeeeEeeeeecc-cchhhhhh-------cccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc---ee
Confidence              23333 45556667776 55544443       7889999999999998778889999999999999988763   23


Q ss_pred             eecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       309 ~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      -+.+|              ..+.+.+||+||..++..++ |.++|...
T Consensus       434 y~~gh--------------~kl~d~kFSqdgts~~lsd~hgql~i~g~  467 (1113)
T KOG0644|consen  434 YFIGH--------------GKLVDGKFSQDGTSIALSDDHGQLYILGT  467 (1113)
T ss_pred             eeccc--------------ceeeccccCCCCceEecCCCCCceEEecc
Confidence            33454              67888999999999999877 99999988

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=7.5e-18  Score=141.18  Aligned_cols=193  Identities=20%  Similarity=0.319  Sum_probs=145.0

Q ss_pred             CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEc
Q 014005           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  124 (432)
Q Consensus        45 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s  124 (432)
                      ..+|++-..|.|+|||..+++.+                           ..|+++.            ..++.+.|.-.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l---------------------------~~fk~~~------------~~~N~vrf~~~   81 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLL---------------------------EEFKGPP------------ATTNGVRFISC   81 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhh---------------------------heecCCC------------CcccceEEecC
Confidence            45888889999999999997644                           6888998            88899999532


Q ss_pred             CCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeeccc
Q 014005          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  204 (432)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~  204 (432)
                      .....+.+|+.||+|++||++..........                                                 
T Consensus        82 ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~-------------------------------------------------  112 (376)
T KOG1188|consen   82 DSPHGVISCSSDGTVRLWDIRSQAESARISW-------------------------------------------------  112 (376)
T ss_pred             CCCCeeEEeccCCeEEEEEeecchhhhheec-------------------------------------------------
Confidence            2466799999999999999987542111110                                                 


Q ss_pred             ccceeeEEeecCC-CCCeeEEEeCCCCCEEEEE-----cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCC
Q 014005          205 VHARCQKVYPHAH-DFNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  278 (432)
Q Consensus       205 ~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~-----~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  278 (432)
                                ..+ .....+++.+-.++.+++|     .+..+.+||++...+.+..+      ...|...|++++|+|.
T Consensus       113 ----------~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~------~eSH~DDVT~lrFHP~  176 (376)
T KOG1188|consen  113 ----------TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL------NESHNDDVTQLRFHPS  176 (376)
T ss_pred             ----------cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh------hhhccCcceeEEecCC
Confidence                      122 2355667777677788876     37789999999555545544      3789999999999999


Q ss_pred             CCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC-CEEEE-eeCCeEEEEec
Q 014005          279 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLS-RDYMNLKVFRY  355 (432)
Q Consensus       279 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~s-~~~~~i~iwd~  355 (432)
                      .+++|++|+.||.|.+||+..-..-+....++..              ...|..+.|..++ +.|.+ ....+..+|++
T Consensus       177 ~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~--------------~sSI~~igw~~~~ykrI~clTH~Etf~~~el  241 (376)
T KOG1188|consen  177 DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINH--------------GSSIHLIGWLSKKYKRIMCLTHMETFAIYEL  241 (376)
T ss_pred             CCCeEEeecccceEEeeecCCCcchhhHHHhhcc--------------cceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence            9999999999999999999865433333344443              5789999999988 23444 44499999999

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=1.2e-17  Score=149.73  Aligned_cols=246  Identities=13%  Similarity=0.181  Sum_probs=177.7

Q ss_pred             cceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccc
Q 014005           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (432)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (432)
                      ..+...+.||+            +.|.+|+.  .|.|.+|++|+.||+|++|.+.++.+.....+.              
T Consensus       390 t~~~lvyrGHt------------g~Vr~iSv--dp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d--------------  441 (733)
T KOG0650|consen  390 TRCALVYRGHT------------GLVRSISV--DPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD--------------  441 (733)
T ss_pred             ceeeeeEeccC------------CeEEEEEe--cCCcceeeecCCCCcEEEEEeecceEEEEEeec--------------
Confidence            35556789999            99999999  889999999999999999999999876655553              


Q ss_pred             cccccccCCCCCcceeccee--------------------------------eccceEEEEeecc---cccceeeEEeec
Q 014005          171 KNFMNEHNPPSFAHGYHLEW--------------------------------TENMATKIANVGN---SVHARCQKVYPH  215 (432)
Q Consensus       171 ~~i~~~~~~~~~~~~~~~~~--------------------------------~~~~~v~i~d~~~---~~~~~~~~~~~~  215 (432)
                      +.|.+++|+|.+..-+.+..                                ..+..+..|.-..   ...+  ++.. -
T Consensus       442 ~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~--v~~~-I  518 (733)
T KOG0650|consen  442 SEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKG--VCIV-I  518 (733)
T ss_pred             ceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccc--eEEE-E
Confidence            67888888887543222111                                0133455665431   1112  2222 4


Q ss_pred             CCCCCeeEEEeCCCCCEEEEE-c---CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCe
Q 014005          216 AHDFNINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF  291 (432)
Q Consensus       216 ~~~~~i~~~~~~~~~~~l~~~-~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~  291 (432)
                      .|...|+.+.|+..|.+|++. .   ...|.|.++. .......       +....+.|.++.|+|.. .+|++++. ..
T Consensus       519 ~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS-K~~sQ~P-------F~kskG~vq~v~FHPs~-p~lfVaTq-~~  588 (733)
T KOG0650|consen  519 KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS-KRKSQSP-------FRKSKGLVQRVKFHPSK-PYLFVATQ-RS  588 (733)
T ss_pred             ecCCccceeeeecCCceEEEeccCCCcceEEEEecc-cccccCc-------hhhcCCceeEEEecCCC-ceEEEEec-cc
Confidence            688899999999999999986 3   4578888887 2332222       24455679999999998 77777764 47


Q ss_pred             EEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec----CcceeEeecce
Q 014005          292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY----EPVMTLSFCGI  366 (432)
Q Consensus       292 i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~----~~~~~~~~~~~  366 (432)
                      |+|||+..+.+.   .+.+.+              ..+|..++.+|.|.-|+.|+. +.+..+|+    ++.++++.|..
T Consensus       589 vRiYdL~kqelv---KkL~tg--------------~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~  651 (733)
T KOG0650|consen  589 VRIYDLSKQELV---KKLLTG--------------SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK  651 (733)
T ss_pred             eEEEehhHHHHH---HHHhcC--------------CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhh
Confidence            999999987653   233444              579999999999998888865 99999999    68888888864


Q ss_pred             eeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          367 YVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                                 .+....+....-+.++|+.||.+.||-.
T Consensus       652 -----------avr~Va~H~ryPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  652 -----------AVRSVAFHKRYPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             -----------hhhhhhhccccceeeeecCCCcEEEEee
Confidence                       2233333334445788889999888873

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=2.5e-18  Score=153.05  Aligned_cols=260  Identities=12%  Similarity=0.095  Sum_probs=186.3

Q ss_pred             ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      ....|.+.|+.++|.|....|++++.||+|++|+++.....                   .....+.+.+|.+|.     
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s-------------------~~~~~epi~tfraH~-----  344 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS-------------------AEKDVEPILTFRAHE-----  344 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc-------------------cccceeeeEEEeccc-----
Confidence            34578899999999999999999999999999999442210                   111456778999999     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--------eeeeeecCCCCccccccccccccccccccC
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--------VKKIKEMDHFPFVSSENTLLAEKNFMNEHN  178 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  178 (432)
                             ++|.|+++  .++++.+++|+-||+|+.|++-...        ......+.+|.           +.+..+++
T Consensus       345 -------gPVl~v~v--~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ght-----------davw~l~~  404 (577)
T KOG0642|consen  345 -------GPVLCVVV--PSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHT-----------DAVWLLAL  404 (577)
T ss_pred             -------CceEEEEe--cCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccc-----------cceeeeee
Confidence                   99999999  8999999999999999999764211        11112233444           77888999


Q ss_pred             CCCCcceecceeeccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCCCCCceeeE
Q 014005          179 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNI  255 (432)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~  255 (432)
                      +.....+..++.  ||++++|+....   .+ .+|. ....+...++.+-... ...++. .-+.--+.+++ ..+.+.+
T Consensus       405 s~~~~~Llscs~--DgTvr~w~~~~~---~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e-v~s~~~~  477 (577)
T KOG0642|consen  405 SSTKDRLLSCSS--DGTVRLWEPTEE---SP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDME-VVSDLLI  477 (577)
T ss_pred             cccccceeeecC--CceEEeeccCCc---Cc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhh-hhhheee
Confidence            999999999988  999999998743   22 2221 1122334455554332 122222 44444455555 3444444


Q ss_pred             eecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEE
Q 014005          256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (432)
Q Consensus       256 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~  335 (432)
                      +.-...........++.+.++|.+ .+.+++..|+.|+++|..++++    +.....|             ...++++++
T Consensus       478 ~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~----l~s~~a~-------------~~svtslai  539 (577)
T KOG0642|consen  478 FESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKI----LHSMVAH-------------KDSVTSLAI  539 (577)
T ss_pred             ccccCCCcccccCccceEEecCCC-CeeEecccCCceeccccccccc----chheeec-------------cceecceee
Confidence            421111112223568889999998 8999999999999999999887    5677776             789999999


Q ss_pred             cCCCCEEEEeeC-CeEEEEec
Q 014005          336 ANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       336 s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      .|+|-+|++++. +.+++|.+
T Consensus       540 ~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  540 DPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             cCCCceEEeecCCceeehhhc
Confidence            999999999855 99999999

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.78  E-value=7.6e-18  Score=136.31  Aligned_cols=258  Identities=13%  Similarity=0.125  Sum_probs=172.8

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee-cCCccccccc
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLK  108 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h~~~~~~~~  108 (432)
                      .|.+.|+|+.|..+++ |.+|..-|.+++|++.+....                           ..+. .|.       
T Consensus        12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~---------------------------~~~r~~g~-------   56 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL---------------------------PLIRLFGR-------   56 (323)
T ss_pred             cccchheehhhccchh-hhcccccceEEEEEeecCccc---------------------------hhhhhhcc-------
Confidence            5778999999988776 889999999999999987533                           3344 233       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCC-CCccccccccc-------------------
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH-FPFVSSENTLL-------------------  168 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~-------------------  168 (432)
                           ..|+.+.-  -|+ ..+.+-++|..+.+|++..+....+...-. +-.+|..+-..                   
T Consensus        57 -----~~it~lq~--~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~  128 (323)
T KOG0322|consen   57 -----LFITNLQS--IPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDET  128 (323)
T ss_pred             -----ceeeceee--cCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchh
Confidence                 67777777  455 578888999999999997643222111100 00111111100                   


Q ss_pred             --------------------cccccccccCCC--CCc-ceecceeeccceEEEEeecccc-------cceeeEEeecCCC
Q 014005          169 --------------------AEKNFMNEHNPP--SFA-HGYHLEWTENMATKIANVGNSV-------HARCQKVYPHAHD  218 (432)
Q Consensus       169 --------------------~~~~i~~~~~~~--~~~-~~~~~~~~~~~~v~i~d~~~~~-------~~~~~~~~~~~~~  218 (432)
                                          ..+.+.+..+..  ... +++.|..  +|.+.+||+....       ..+..... ..|.
T Consensus       129 h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyE--sghvv~wd~S~~~~~~~~~~~~kv~~~~-ash~  205 (323)
T KOG0322|consen  129 HKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYE--SGHVVIWDLSTGDKIIQLPQSSKVESPN-ASHK  205 (323)
T ss_pred             hhhccCccceeEccCchhccccCceeeeeccccccceEEEEEecc--CCeEEEEEccCCceeeccccccccccch-hhcc
Confidence                                112222222211  111 3334444  8899999998420       00111222 5688


Q ss_pred             CCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005          219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (432)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~  297 (432)
                      .++.++.+.+....=++| .+..+..|.++.....+.+-   . ...-..-.|..+..-||+ +++|+++.|++||+|..
T Consensus       206 qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~---~-e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVysw  280 (323)
T KOG0322|consen  206 QPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR---K-EITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSW  280 (323)
T ss_pred             CcceeeeechhhcCCcCCCccccceeeeeccccCccccc---c-eEEecCCCccceEEccCC-cEEeecccCCcEEEEEe
Confidence            999999998765544556 67788899988432222210   0 112223458889999999 99999999999999999


Q ss_pred             cccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~  355 (432)
                      ++...    +..++.|             .+.|++++|+|+...+|+++ |++|.+|++
T Consensus       281 rtl~p----LAVLkyH-------------sagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  281 RTLNP----LAVLKYH-------------SAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ccCCc----hhhhhhh-------------hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99886    7888887             89999999999988999875 499999986

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.78  E-value=5.9e-17  Score=151.17  Aligned_cols=283  Identities=14%  Similarity=0.171  Sum_probs=185.1

Q ss_pred             cchhhhhhhhcCCCCCccccCCCcEEEEEEcCC-CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccC
Q 014005           11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHP   89 (432)
Q Consensus        11 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~-g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   89 (432)
                      .+.|.+....   ..-..+.-...|+|+.|+|. ..++|.|..+|.|.+||+..+....                     
T Consensus       224 ~~vW~~~~p~---~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---------------------  279 (555)
T KOG1587|consen  224 LLVWSLKNPN---TPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---------------------  279 (555)
T ss_pred             EEEEecCCCC---CceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---------------------
Confidence            4556655431   22233445778999999995 4577888999999999998865320                     


Q ss_pred             CcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccc
Q 014005           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (432)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (432)
                      ..........|.            .+++.+.|..++.+.-|++++.||.|..|+++.-.... .........-...+.-.
T Consensus       280 ~s~ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~-e~~~~~~~~~~~~~~~~  346 (555)
T KOG1587|consen  280 PSGLSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPV-EGLLLESKKHKGQQSSK  346 (555)
T ss_pred             CcccccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccch-hhccccccccccccccc
Confidence            000111233466            89999999765555669999999999999876432100 00000000000001112


Q ss_pred             ccccccccCCCCC-cceecceeeccceEEEEeeccc-ccc----eeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEE
Q 014005          170 EKNFMNEHNPPSF-AHGYHLEWTENMATKIANVGNS-VHA----RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRIN  242 (432)
Q Consensus       170 ~~~i~~~~~~~~~-~~~~~~~~~~~~~v~i~d~~~~-~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~  242 (432)
                      ...+..+.|.+.. ..++.|+.  .|.|.--+.... ...    +....+ ..|.+.|+++.++|=+..+... .|.+++
T Consensus       347 ~~~~t~~~F~~~~p~~FiVGTe--~G~v~~~~r~g~~~~~~~~~~~~~~~-~~h~g~v~~v~~nPF~~k~fls~gDW~vr  423 (555)
T KOG1587|consen  347 AVGATSLKFEPTDPNHFIVGTE--EGKVYKGCRKGYTPAPEVSYKGHSTF-ITHIGPVYAVSRNPFYPKNFLSVGDWTVR  423 (555)
T ss_pred             ccceeeEeeccCCCceEEEEcC--CcEEEEEeccCCcccccccccccccc-cccCcceEeeecCCCccceeeeeccceeE
Confidence            3566777787654 34555665  676655333221 111    223334 5788999999999976655544 899999


Q ss_pred             EEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccc
Q 014005          243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF  322 (432)
Q Consensus       243 lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~  322 (432)
                      ||.......++..+       ..+...+++++|||..+.+|+++..||.+.+||+.......  .....-+         
T Consensus       424 iWs~~~~~~Pl~~~-------~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P--v~s~~~~---------  485 (555)
T KOG1587|consen  424 IWSEDVIASPLLSL-------DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP--VLSQKVC---------  485 (555)
T ss_pred             eccccCCCCcchhh-------hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC--ccccccc---------
Confidence            99987333344333       66677799999999998999999999999999998654311  2222221         


Q ss_pred             eeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          323 FTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       323 ~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                          ......+.|+++|+.|+.|++ |++.+|++
T Consensus       486 ----~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  486 ----SPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             ----ccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence                356678889999999999988 99999999

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.78  E-value=1.3e-16  Score=136.78  Aligned_cols=166  Identities=13%  Similarity=0.200  Sum_probs=131.5

Q ss_pred             CCcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        32 ~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      ..+|..+.|.++.. .||||+.|..|+||.++......                  ..+..++...+..|+         
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~------------------~~~~V~y~s~Ls~H~---------   65 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG------------------GDMKVEYLSSLSRHT---------   65 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCC------------------CceeEEEeecccCCc---------
Confidence            45899999999877 99999999999999998765320                  001345667788898         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEcc--------C------cceeeeeecCCCCccccccccccccccccc
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR--------D------QKVKKIKEMDHFPFVSSENTLLAEKNFMNE  176 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~--------~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  176 (432)
                         ..|+++.|  +|+|+.+++|+.+|.|.+|...        +      ...........|.           ..+..+
T Consensus        66 ---~aVN~vRf--~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~-----------~diydL  129 (434)
T KOG1009|consen   66 ---RAVNVVRF--SPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHR-----------DDIYDL  129 (434)
T ss_pred             ---ceeEEEEE--cCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccc-----------cchhhh
Confidence               99999999  8999999999999999999876        2      1122233333444           789999


Q ss_pred             cCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 014005          177 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  246 (432)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~  246 (432)
                      +|++++.++.+++.  |+.+++||+.   .+.....+ .+|...+..++|.|-++++++- .|...+.+.+
T Consensus       130 ~Ws~d~~~l~s~s~--dns~~l~Dv~---~G~l~~~~-~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~  194 (434)
T KOG1009|consen  130 AWSPDSNFLVSGSV--DNSVRLWDVH---AGQLLAIL-DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSA  194 (434)
T ss_pred             hccCCCceeeeeec--cceEEEEEec---cceeEeec-cccccccceeecchhhhhhhhhccCcccceeee
Confidence            99999999999999  9999999999   77888877 8898899999999888877765 5554444443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=2.6e-17  Score=140.41  Aligned_cols=239  Identities=11%  Similarity=0.147  Sum_probs=178.7

Q ss_pred             CccccCCCcEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005           26 DEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (432)
Q Consensus        26 ~~~~~h~~~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~  104 (432)
                      +.--+|+++|..++|+|-. ..||+||.|.+|.||++-.+.+.                    .+-.+++..+.||+   
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~--------------------~~ltepvv~L~gH~---  131 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT--------------------RDLTEPVVELYGHQ---  131 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccc--------------------cCcccceEEEeecc---
Confidence            3445799999999999954 57899999999999998765432                    12345678899999   


Q ss_pred             cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                               ..|.-++|+|. -.+.|++++.|++|.+|++.+++....  +. |+           .-|.++.|+.++..
T Consensus       132 ---------rrVg~V~wHPt-A~NVLlsag~Dn~v~iWnv~tgeali~--l~-hp-----------d~i~S~sfn~dGs~  187 (472)
T KOG0303|consen  132 ---------RRVGLVQWHPT-APNVLLSAGSDNTVSIWNVGTGEALIT--LD-HP-----------DMVYSMSFNRDGSL  187 (472)
T ss_pred             ---------eeEEEEeeccc-chhhHhhccCCceEEEEeccCCceeee--cC-CC-----------CeEEEEEeccCCce
Confidence                     99999999653 345789999999999999999983332  33 55           78999999999999


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCC-CeeEEEeCCCCCEEEEE----cCCeEEEEeCCCCCceeeEeecC
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF-NINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMK  259 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~----~d~~i~lwd~~~~~~~~~~~~~~  259 (432)
                      +.+...  |..|+|||.+   +++.+..- .+|.+ .-.-+.|-.++..+.+|    ++.++-+||...-...+...   
T Consensus       188 l~Ttck--DKkvRv~dpr---~~~~v~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~---  258 (472)
T KOG0303|consen  188 LCTTCK--DKKVRVIDPR---RGTVVSEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ---  258 (472)
T ss_pred             eeeecc--cceeEEEcCC---CCcEeeec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeE---
Confidence            999999  9999999999   66666665 45654 34456677888877777    38899999987444433221   


Q ss_pred             CCCcCCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005          260 PSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (432)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d  338 (432)
                        . ...++.|.---|+|+. .++..++ .|+.|+-|.+.......+.+..|+.              ..+-..+.|-|.
T Consensus       259 --e-lDtSnGvl~PFyD~dt-~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S--------------~epQRG~g~mPK  320 (472)
T KOG0303|consen  259 --E-LDTSNGVLLPFYDPDT-SIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS--------------KEPQRGMGFMPK  320 (472)
T ss_pred             --E-eccCCceEEeeecCCC-CEEEEEecCCcceEEEEecCCCceeEEeccccc--------------CCcccccccccc
Confidence              1 2334557777788988 6665554 8999999999876654445566665              356667777775

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=8e-17  Score=137.43  Aligned_cols=266  Identities=8%  Similarity=0.060  Sum_probs=181.7

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      .+.|.+.|.++.|+.++++||+|+.|..+++|+++..-.-+                     ..+++ .+.+|.      
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k---------------------~~KPI-~~~~~~------  103 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK---------------------TPKPI-GVMEHP------  103 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc---------------------CCCCc-eeccCc------
Confidence            46789999999999999999999999999999987532110                     01122 233332      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                          +...|.+++|  ...+.++++|..+++|.+.|+++.+...+...+...           +.|+.+..+|....++.
T Consensus       104 ----H~SNIF~L~F--~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~-----------~~VY~m~~~P~DN~~~~  166 (609)
T KOG4227|consen  104 ----HRSNIFSLEF--DLENRFLYSGERWGTVIKHDIETKQSIYVANENNNR-----------GDVYHMDQHPTDNTLIV  166 (609)
T ss_pred             ----cccceEEEEE--ccCCeeEecCCCcceeEeeecccceeeeeecccCcc-----------cceeecccCCCCceEEE
Confidence                1178999999  778889999999999999999998866666665555           78999999999888888


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      .+.  ++.|.+||.+.....-..-.. .........+.|+|... ++++. ..+.+.+||++.....+.....- ..++.
T Consensus       167 ~t~--~~~V~~~D~Rd~~~~~~~~~~-AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~-~~L~~  242 (609)
T KOG4227|consen  167 VTR--AKLVSFIDNRDRQNPISLVLP-ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMF-KGLPQ  242 (609)
T ss_pred             Eec--CceEEEEeccCCCCCCceeee-cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhcc-ccCcc
Confidence            888  999999999854211111111 34456778899999755 45566 88899999999544433221000 01111


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc-cccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      ....-.++.|+|.| +.|++--....-.+||+-+.+.     -.|+. |  .+.  ..+  ....+.+++|..|-. +++
T Consensus       243 ~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R~-----~V~k~D~--N~~--GY~--N~~T~KS~~F~~D~~-v~t  309 (609)
T KOG4227|consen  243 ENTEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQRC-----FVLKSDH--NPN--GYC--NIKTIKSMTFIDDYT-VAT  309 (609)
T ss_pred             cchhhhheeeCCCC-CeehhhhccCCCEEeeeecccc-----eeEeccC--CCC--cce--eeeeeeeeeeeccee-eec
Confidence            11223678999999 6666655555556788876543     23322 2  000  000  134677888887654 888


Q ss_pred             eeC-CeEEEEec
Q 014005          345 RDY-MNLKVFRY  355 (432)
Q Consensus       345 ~~~-~~i~iwd~  355 (432)
                      |+| -.|++|.+
T Consensus       310 GSD~~~i~~Wkl  321 (609)
T KOG4227|consen  310 GSDHWGIHIWKL  321 (609)
T ss_pred             cCcccceEEEec
Confidence            877 89999999

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.76  E-value=1.5e-17  Score=150.03  Aligned_cols=203  Identities=16%  Similarity=0.224  Sum_probs=151.5

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      ..|+++.|.| -|.+.|++++.||.|++|.+..+.+...                                         
T Consensus       628 t~vtDl~WdP-FD~~rLAVa~ddg~i~lWr~~a~gl~e~-----------------------------------------  665 (1012)
T KOG1445|consen  628 TLVTDLHWDP-FDDERLAVATDDGQINLWRLTANGLPEN-----------------------------------------  665 (1012)
T ss_pred             ceeeecccCC-CChHHeeecccCceEEEEEeccCCCCcc-----------------------------------------
Confidence            5799999954 4678899999999999999976552221                                         


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (432)
                                  ...+...+ ..|...|+++.|+|- ...|+++ .|-+|++||++.... ...       +.+|.+.|.
T Consensus       666 ------------~~tPe~~l-t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-~~~-------l~gHtdqIf  724 (1012)
T KOG1445|consen  666 ------------EMTPEKIL-TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-YSR-------LVGHTDQIF  724 (1012)
T ss_pred             ------------cCCcceee-ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-hhe-------eccCcCcee
Confidence                        22334444 789999999999994 5567788 999999999994333 322       389999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-ee----
Q 014005          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD----  346 (432)
Q Consensus       272 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~----  346 (432)
                      +++|+|+| +.+|+.+.||+|++|+.++++.     ...++.  .+.        ...-..+.|.-||+++++ |-    
T Consensus       725 ~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~-----pv~Eg~--gpv--------gtRgARi~wacdgr~viv~Gfdk~S  788 (1012)
T KOG1445|consen  725 GIAWSPDG-RRIATVCKDGTLRVYEPRSREQ-----PVYEGK--GPV--------GTRGARILWACDGRIVIVVGFDKSS  788 (1012)
T ss_pred             EEEECCCC-cceeeeecCceEEEeCCCCCCC-----ccccCC--CCc--------cCcceeEEEEecCcEEEEecccccc
Confidence            99999999 9999999999999999998774     333331  000        123346788999999876 42    


Q ss_pred             CCeEEEEec-----CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          347 YMNLKVFRY-----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       347 ~~~i~iwd~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      ...|.+||.     .++.+....-         ..+.+...|..+....++||.-|..|..|.
T Consensus       789 eRQv~~Y~Aq~l~~~pl~t~~lDv---------aps~LvP~YD~Ds~~lfltGKGD~~v~~yE  842 (1012)
T KOG1445|consen  789 ERQVQMYDAQTLDLRPLYTQVLDV---------APSPLVPHYDYDSNVLFLTGKGDRFVNMYE  842 (1012)
T ss_pred             hhhhhhhhhhhccCCcceeeeecc---------cCccccccccCCCceEEEecCCCceEEEEE
Confidence            278899988     4555544433         244555566667777899999999999998

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=9.1e-16  Score=130.19  Aligned_cols=234  Identities=14%  Similarity=0.170  Sum_probs=165.1

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ...+..+.|+.+...|..|+.|| -++|+.+.....                           .......          
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~---------------------------~~~~~~~----------   46 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC---------------------------FSKDTEG----------   46 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh---------------------------hcccCCC----------
Confidence            44678888999999999999997 578887653210                           0000011          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCC--CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                        ..|.-+-|  +  ..+++..+.+  +.+++.+.+.+....-..+.              ..|.++.++.+.-.+..  
T Consensus        47 --~~IvEmLF--S--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp--------------t~IL~VrmNr~RLvV~L--  104 (391)
T KOG2110|consen   47 --VSIVEMLF--S--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFP--------------TSILAVRMNRKRLVVCL--  104 (391)
T ss_pred             --eEEEEeec--c--cceeEEEecCCCceEEEEEcccCceEEEEecC--------------CceEEEEEccceEEEEE--
Confidence              23444445  3  4466555443  45888888766532222221              45666666655433322  


Q ss_pred             eeccceEEEEeecccccceeeEEeec--CCCCCeeEEEeCCCCCEEEEE---cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPH--AHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~---~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (432)
                         ...+.|||++   ..+.+.++..  .+...+.++++++.+.+++.-   ..|.|.+||.. +-+....+       .
T Consensus       105 ---ee~IyIydI~---~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~-nl~~v~~I-------~  170 (391)
T KOG2110|consen  105 ---EESIYIYDIK---DMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI-NLQPVNTI-------N  170 (391)
T ss_pred             ---cccEEEEecc---cceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc-cceeeeEE-------E
Confidence               4569999999   6677766632  355567777777778888853   68999999999 66677666       8


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEeCCCe-EEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  343 (432)
                      .|.+.+-+++|+++| .+||+++..|+ ||++.+.+|+.    +..|+--.           ....|.+++|+||+++|+
T Consensus       171 aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~k----l~eFRRG~-----------~~~~IySL~Fs~ds~~L~  234 (391)
T KOG2110|consen  171 AHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQK----LYEFRRGT-----------YPVSIYSLSFSPDSQFLA  234 (391)
T ss_pred             ecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccE----eeeeeCCc-----------eeeEEEEEEECCCCCeEE
Confidence            999999999999999 99999999996 69999999886    45554310           135789999999999999


Q ss_pred             EeeC-CeEEEEec
Q 014005          344 SRDY-MNLKVFRY  355 (432)
Q Consensus       344 s~~~-~~i~iwd~  355 (432)
                      +.++ ++|.+|.+
T Consensus       235 ~sS~TeTVHiFKL  247 (391)
T KOG2110|consen  235 ASSNTETVHIFKL  247 (391)
T ss_pred             EecCCCeEEEEEe
Confidence            8766 99999999

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.76  E-value=2e-17  Score=137.95  Aligned_cols=255  Identities=13%  Similarity=0.206  Sum_probs=179.9

Q ss_pred             cCCCcEEEEEEcCC----CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        30 ~h~~~V~~~~fsp~----g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      .|...-..++|+-+    ..+||.|+.-|.|+|.|+.+++..                           ..+.+|.    
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~---------------------------~~~~ghG----  135 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS---------------------------KNYRGHG----  135 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc---------------------------cceeccC----
Confidence            45566777777653    358999999999999999887643                           6788998    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCccee-eeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                              ..|+.|.++| .+.+++++++.|..|++|++++..+. .+....+|.           +.|.++.|+.++.+
T Consensus       136 --------~sINeik~~p-~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr-----------deVLSvD~~~~gd~  195 (385)
T KOG1034|consen  136 --------GSINEIKFHP-DRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR-----------DEVLSVDFSLDGDR  195 (385)
T ss_pred             --------ccchhhhcCC-CCCcEEEEecCCceEEEEeccCCeEEEEeccccccc-----------CcEEEEEEcCCCCe
Confidence                    9999999954 34578999999999999999998854 455667777           89999999999999


Q ss_pred             eecceeeccceEEEEeecccc---cceee-------------------EEe--ecCCCCCeeEEEeCCCCCEEEEE-cCC
Q 014005          185 GYHLEWTENMATKIANVGNSV---HARCQ-------------------KVY--PHAHDFNINSISNNSDCETFVSA-DDL  239 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~---~~~~~-------------------~~~--~~~~~~~i~~~~~~~~~~~l~~~-~d~  239 (432)
                      +++++.  |.++++|++....   .-++.                   ..|  ..-|...|-|+.|-  |+++++- -++
T Consensus       196 i~ScGm--Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscen  271 (385)
T KOG1034|consen  196 IASCGM--DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCEN  271 (385)
T ss_pred             eeccCC--cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCc
Confidence            999999  9999999987210   00000                   000  12355555566654  4567765 688


Q ss_pred             eEEEEeCCCCCceeeEeecCCC--------CcCCCCcceEE--EEEcCCCCcEEEEEeCCCeEEEEEcccccccccccee
Q 014005          240 RINLWNLEISDQCFNIVDMKPS--------NMDDLTEVITS--AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  309 (432)
Q Consensus       240 ~i~lwd~~~~~~~~~~~~~~~~--------~~~~~~~~v~~--~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  309 (432)
                      .|..|....-++.+..  ++|.        .+.-....|+-  .+|+|-+ ++||.|...|.|.+||++......  ..+
T Consensus       272 aI~~w~pgkl~e~~~~--vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~~--~tt  346 (385)
T KOG1034|consen  272 AIVCWKPGKLEESIHN--VKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPPK--CTT  346 (385)
T ss_pred             eEEEEecchhhhhhhc--cCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCcc--Cce
Confidence            9999988322333221  1111        11222334444  4567777 899999999999999999765421  122


Q ss_pred             ecccccccCCccceeeeecceeEEEEcCCCCEEEE-eeCCeEEEEec
Q 014005          310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKVFRY  355 (432)
Q Consensus       310 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~~~i~iwd~  355 (432)
                      +..+           .....|...+||.||..|+. +++++|.-||.
T Consensus       347 l~~s-----------~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  347 LTHS-----------KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             EEec-----------cccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            2221           01467899999999998887 56699998885

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=3.1e-18  Score=164.43  Aligned_cols=213  Identities=15%  Similarity=0.228  Sum_probs=162.5

Q ss_pred             ccCCCcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           29 LQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      -.|++.|..+.|++.+. .||+|+.||.|.|||+++-+..                   ++|.      -+.-.      
T Consensus       113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP-------------------~~~~------~~~~~------  161 (1049)
T KOG0307|consen  113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP-------------------FTPG------SQAPP------  161 (1049)
T ss_pred             cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC-------------------CCCC------CCCCc------
Confidence            36899999999999765 9999999999999999885432                   0000      01122      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce-e
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG-Y  186 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~  186 (432)
                            +.|.+++|. ....+.|++++.+|.+.|||++..+  .+..+..+.         ....+..++|+|+...- +
T Consensus       162 ------~eI~~lsWN-rkvqhILAS~s~sg~~~iWDlr~~~--pii~ls~~~---------~~~~~S~l~WhP~~aTql~  223 (1049)
T KOG0307|consen  162 ------SEIKCLSWN-RKVSHILASGSPSGRAVIWDLRKKK--PIIKLSDTP---------GRMHCSVLAWHPDHATQLL  223 (1049)
T ss_pred             ------ccceEeccc-hhhhHHhhccCCCCCceeccccCCC--cccccccCC---------CccceeeeeeCCCCceeee
Confidence                  789999994 2345678899999999999998775  333332222         11346689999986543 3


Q ss_pred             cceeec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005          187 HLEWTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (432)
Q Consensus       187 ~~~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (432)
                      .++... .-.|.+||++.  ...+++++ .+|...|.++.|++.+ ++++++ .|+.|.+|+.+ +++.+..+       
T Consensus       224 ~As~dd~~PviqlWDlR~--assP~k~~-~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~-tgEvl~~~-------  292 (1049)
T KOG0307|consen  224 VASGDDSAPVIQLWDLRF--ASSPLKIL-EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN-TGEVLGEL-------  292 (1049)
T ss_pred             eecCCCCCceeEeecccc--cCCchhhh-cccccceeeeccCCCCchhhhcccCCCCeeEecCC-CceEeeec-------
Confidence            333211 33899999986  55677888 8999999999999977 677777 99999999999 67777655       


Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccc
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA  301 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~  301 (432)
                      ....+++..+.|+|..+.+|++++.||.|.|+.+....
T Consensus       293 p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  293 PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            66778999999999997799999999999999998654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=7.6e-16  Score=127.92  Aligned_cols=272  Identities=10%  Similarity=0.071  Sum_probs=182.4

Q ss_pred             cccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccccc
Q 014005            9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH   88 (432)
Q Consensus         9 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (432)
                      .....|+|.. |+  .....-.|..+|+|++||++|+.|+|++.|..|.+||+..+..+                     
T Consensus        45 G~vvI~D~~T-~~--iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l---------------------  100 (405)
T KOG1273|consen   45 GRVVIYDFDT-FR--IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL---------------------  100 (405)
T ss_pred             CcEEEEEccc-cc--hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce---------------------
Confidence            3455566652 22  12222378899999999999999999999999999999887533                     


Q ss_pred             CCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccc
Q 014005           89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL  168 (432)
Q Consensus        89 p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  168 (432)
                            ..+.             .+.+|+...|+|...+. ++.+-.+..-.+-++..+....+..-....         
T Consensus       101 ------~rir-------------f~spv~~~q~hp~k~n~-~va~~~~~sp~vi~~s~~~h~~Lp~d~d~d---------  151 (405)
T KOG1273|consen  101 ------KRIR-------------FDSPVWGAQWHPRKRNK-CVATIMEESPVVIDFSDPKHSVLPKDDDGD---------  151 (405)
T ss_pred             ------eEEE-------------ccCccceeeeccccCCe-EEEEEecCCcEEEEecCCceeeccCCCccc---------
Confidence                  2221             12789999997644443 333333444555565544322222111111         


Q ss_pred             cccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCC
Q 014005          169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE  247 (432)
Q Consensus       169 ~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~  247 (432)
                      .+..-.+..|.+.++++++|..  .|.+.+++..   +.+|+..++......|..+.++..|+.|+.- .|..|+.|+++
T Consensus       152 ln~sas~~~fdr~g~yIitGts--KGkllv~~a~---t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  152 LNSSASHGVFDRRGKYIITGTS--KGKLLVYDAE---TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             cccccccccccCCCCEEEEecC--cceEEEEecc---hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            0122233468899999999998  9999999999   7788888733334789999999999999998 99999999987


Q ss_pred             CCCceeeEeecCCC-CcCC--CCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeecccccccCCccce
Q 014005          248 ISDQCFNIVDMKPS-NMDD--LTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (432)
Q Consensus       248 ~~~~~~~~~~~~~~-~~~~--~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~  323 (432)
                      .-...-+-..+.+. .++.  ..-.-.+++|+.+| .++..++ ....++||....|.+    ++.+.|. .        
T Consensus       227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~~~GsL----VKILhG~-k--------  292 (405)
T KOG1273|consen  227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEKSIGSL----VKILHGT-K--------  292 (405)
T ss_pred             hhcccCccCCcChhHHHHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEecCCcce----eeeecCC-c--------
Confidence            10000000000000 0000  11234578899999 6665554 556799999999988    7888883 1        


Q ss_pred             eeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          324 TEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       324 ~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                         .....++.|+|-...+++-..|.+++|..
T Consensus       293 ---gE~l~DV~whp~rp~i~si~sg~v~iw~~  321 (405)
T KOG1273|consen  293 ---GEELLDVNWHPVRPIIASIASGVVYIWAV  321 (405)
T ss_pred             ---hhheeecccccceeeeeeccCCceEEEEe
Confidence               25677899999998998876699999988

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.74  E-value=3.6e-16  Score=128.40  Aligned_cols=210  Identities=8%  Similarity=0.160  Sum_probs=154.6

Q ss_pred             ccccCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           27 EELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        27 ~~~~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      +.-++.+++++..|+. +-++|.+.+-|-+..|||++++..                        ....+++-+|.    
T Consensus       145 kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~------------------------~~vkTQLIAHD----  196 (364)
T KOG0290|consen  145 KNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS------------------------GTVKTQLIAHD----  196 (364)
T ss_pred             cccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc------------------------cceeeEEEecC----
Confidence            3445677899999986 557889999999999999998742                        23446788898    


Q ss_pred             ccchhhhhcceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          106 YLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                              +.|..++|  ... -+.|++.+.||.|++||++..+-..+                                
T Consensus       197 --------KEV~DIaf--~~~s~~~FASvgaDGSvRmFDLR~leHSTI--------------------------------  234 (364)
T KOG0290|consen  197 --------KEVYDIAF--LKGSRDVFASVGADGSVRMFDLRSLEHSTI--------------------------------  234 (364)
T ss_pred             --------cceeEEEe--ccCccceEEEecCCCcEEEEEecccccceE--------------------------------
Confidence                    99999999  443 45789999999999999986541111                                


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC-CEEEEE--cCCeEEEEeCCCCCceeeEeecCCC
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA--DDLRINLWNLEISDQCFNIVDMKPS  261 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~  261 (432)
                                   ||.-             .........++|+++. +++|+-  +...|.+.|++.....+..+     
T Consensus       235 -------------IYE~-------------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L-----  283 (364)
T KOG0290|consen  235 -------------IYED-------------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL-----  283 (364)
T ss_pred             -------------EecC-------------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh-----
Confidence                         2211             1113456678888754 456654  67789999999766666544     


Q ss_pred             CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc--ccccceeecccccccCCccceeeeecceeEEEEcC-C
Q 014005          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-D  338 (432)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-d  338 (432)
                        .+|.+.|+.++|.|..+..|++|+.|..+-+||+.+...  ....+..+..              .+.|+.+.|++ .
T Consensus       284 --~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a--------------~~EVNqi~Ws~~~  347 (364)
T KOG0290|consen  284 --RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA--------------GGEVNQIQWSSSQ  347 (364)
T ss_pred             --hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc--------------cceeeeeeecccC
Confidence              999999999999999889999999999999999986432  1111122222              57899999996 4


Q ss_pred             CCEEEEeeCCeEEEE
Q 014005          339 GQHLLSRDYMNLKVF  353 (432)
Q Consensus       339 g~~l~s~~~~~i~iw  353 (432)
                      +.+++.+..+++.+-
T Consensus       348 ~Dwiai~~~kkleiL  362 (364)
T KOG0290|consen  348 PDWIAICFGKKLEIL  362 (364)
T ss_pred             CCEEEEEecCeeeEE
Confidence            789998866666554

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=8.5e-16  Score=127.97  Aligned_cols=213  Identities=14%  Similarity=0.181  Sum_probs=169.2

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ..+|+|.+|++++..+|++.....|.||...+..                        -++...+++.|.          
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~------------------------~w~~~htls~Hd----------   55 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD------------------------LWEPAHTLSEHD----------   55 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCC------------------------CceeceehhhhC----------
Confidence            3589999999999999999999999999988765                        245667888898          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEc-cCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                        ..|+.+.|  +|..+.|++++.|+.-++|.. ..++.++...+....           ...+++.|+|....++.|+.
T Consensus        56 --~~vtgvdW--ap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiN-----------rAAt~V~WsP~enkFAVgSg  120 (361)
T KOG1523|consen   56 --KIVTGVDW--APKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRIN-----------RAATCVKWSPKENKFAVGSG  120 (361)
T ss_pred             --cceeEEee--cCCCCceeEccCCCCccccccCCCCeeccceeEEEec-----------cceeeEeecCcCceEEeccC
Confidence              99999999  889999999999999999999 666655544433333           78899999999999999988


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC--------
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS--------  261 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~--------  261 (432)
                        ...+.+|-++.....-.-+.++..+.+.|.+++|+|++-++++| .|+.++++..-.     +-++.+|.        
T Consensus       121 --ar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayI-----K~Vdekpap~pWgsk~  193 (361)
T KOG1523|consen  121 --ARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYI-----KGVDEKPAPTPWGSKM  193 (361)
T ss_pred             --ccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEee-----eccccCCCCCCCccCC
Confidence              78888988876544433333335677889999999999999999 899999986531     11111111        


Q ss_pred             -------CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccc
Q 014005          262 -------NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA  301 (432)
Q Consensus       262 -------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~  301 (432)
                             ......+++..+.|+|+| ..|+..+.|..+.+-|.....
T Consensus       194 PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  194 PFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             cHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCc
Confidence                   112456789999999999 999999999999999977543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1.1e-16  Score=137.98  Aligned_cols=203  Identities=15%  Similarity=0.181  Sum_probs=148.3

Q ss_pred             EEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcc
Q 014005           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (432)
Q Consensus        36 ~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (432)
                      .+++|+++|..|++|+.||++|||+.......                           .....|.            +.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~---------------------------l~e~~~~------------~e  188 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI---------------------------LEEIAHH------------AE  188 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhh---------------------------hhhHhhc------------Cc
Confidence            78999999999999999999999997665422                           3455666            89


Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC---cceecceeec
Q 014005          116 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF---AHGYHLEWTE  192 (432)
Q Consensus       116 v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~  192 (432)
                      |.++.|  +|||+.|++-+.| ..+||+.+++.......-           ...+..+..+.|..+.   .+........
T Consensus       189 V~DL~F--S~dgk~lasig~d-~~~VW~~~~g~~~a~~t~-----------~~k~~~~~~cRF~~d~~~~~l~laa~~~~  254 (398)
T KOG0771|consen  189 VKDLDF--SPDGKFLASIGAD-SARVWSVNTGAALARKTP-----------FSKDEMFSSCRFSVDNAQETLRLAASQFP  254 (398)
T ss_pred             ccccee--CCCCcEEEEecCC-ceEEEEeccCchhhhcCC-----------cccchhhhhceecccCCCceEEEEEecCC
Confidence            999999  9999999999999 899999998842211111           1123556677777665   3333333333


Q ss_pred             cceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          193 NMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                      .+.++.|++.........+..+ ......|.+++++++|++++.| .||.|-+++.. .-+++..+      -+.|...|
T Consensus       255 ~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~-~lq~~~~v------k~aH~~~V  327 (398)
T KOG0771|consen  255 GGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAK-SLQRLQYV------KEAHLGFV  327 (398)
T ss_pred             CCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEec-eeeeeEee------hhhheeee
Confidence            5566666655321111111110 1234479999999999999999 99999999998 45555544      27899999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~  299 (432)
                      +.+.|+|+. +.+++-+.|....+..+.-
T Consensus       328 T~ltF~Pds-r~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  328 TGLTFSPDS-RYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eeEEEcCCc-CcccccccCCceeEEEEee
Confidence            999999998 9999999999999888764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=6.1e-15  Score=134.30  Aligned_cols=279  Identities=9%  Similarity=0.117  Sum_probs=169.4

Q ss_pred             ccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEec-ccceEEEEEecCCcCCCCccccchhhhcccccccc
Q 014005            8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTST   86 (432)
Q Consensus         8 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (432)
                      +.....|++.. -++-...+.+.+.+....+.++|++++|++++ .++.|.+|+++....+                   
T Consensus        11 ~~~I~~~~~~~-~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-------------------   70 (330)
T PRK11028         11 SQQIHVWNLNH-EGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-------------------   70 (330)
T ss_pred             CCCEEEEEECC-CCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-------------------
Confidence            34455666631 12222334445556778899999999886654 5788999999732111                   


Q ss_pred             ccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeC-CCeEEEEEccC-ccee-eeeecCCCCcccc
Q 014005           87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRD-QKVK-KIKEMDHFPFVSS  163 (432)
Q Consensus        87 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~-~~~~-~~~~~~~~~~~~~  163 (432)
                           ....... ..            .....+.+  +|+++++++++. ++.|.+|++.. +... .......      
T Consensus        71 -----~~~~~~~-~~------------~~p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~------  124 (330)
T PRK11028         71 -----TFAAESP-LP------------GSPTHIST--DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG------  124 (330)
T ss_pred             -----EEeeeec-CC------------CCceEEEE--CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC------
Confidence                 0111111 11            34567889  899998888764 88999999964 2221 1111111      


Q ss_pred             ccccccccccccccCCCCCcceecceeeccceEEEEeeccccccee--eEEeecCCCCCeeEEEeCCCCCEEEEE--cCC
Q 014005          164 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARC--QKVYPHAHDFNINSISNNSDCETFVSA--DDL  239 (432)
Q Consensus       164 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~  239 (432)
                            ......++++|++++++.... .++.|.+||+........  ..............++|+|++++++++  .++
T Consensus       125 ------~~~~~~~~~~p~g~~l~v~~~-~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~  197 (330)
T PRK11028        125 ------LEGCHSANIDPDNRTLWVPCL-KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNS  197 (330)
T ss_pred             ------CCcccEeEeCCCCCEEEEeeC-CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCC
Confidence                  123456788999988866543 268999999974211110  001101123456789999999999877  499


Q ss_pred             eEEEEeCCCCC-c--eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeeccccc
Q 014005          240 RINLWNLEISD-Q--CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAE  315 (432)
Q Consensus       240 ~i~lwd~~~~~-~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~  315 (432)
                      +|.+|+++... .  ....+..-+.... +......+.++|++ ++++++. .++.|.+|++......    ..+.+|..
T Consensus       198 ~v~v~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~~~----~~~~~~~~  271 (330)
T PRK11028        198 SVDVWQLKDPHGEIECVQTLDMMPADFS-DTRWAADIHITPDG-RHLYACDRTASLISVFSVSEDGSV----LSFEGHQP  271 (330)
T ss_pred             EEEEEEEeCCCCCEEEEEEEecCCCcCC-CCccceeEEECCCC-CEEEEecCCCCeEEEEEEeCCCCe----EEEeEEEe
Confidence            99999997321 1  2222211111111 12234578999999 8777775 4789999999654321    22222100


Q ss_pred             ccCCccceeeeecceeEEEEcCCCCEEEEee--CCeEEEEec
Q 014005          316 SHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKVFRY  355 (432)
Q Consensus       316 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~--~~~i~iwd~  355 (432)
                                -......+.|+|||++|+++.  +++|.+|++
T Consensus       272 ----------~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        272 ----------TETQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             ----------ccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence                      012456789999999999753  499999988

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=3.8e-15  Score=139.75  Aligned_cols=265  Identities=12%  Similarity=0.185  Sum_probs=167.2

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ...|.-.++|.++||+++++|+|..||.|.+|.--..+.                       ...-.+.+.-|.      
T Consensus       201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----------------------~~~t~t~lHWH~------  251 (792)
T KOG1963|consen  201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----------------------DSETCTLLHWHH------  251 (792)
T ss_pred             hhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-----------------------ccccceEEEecc------
Confidence            356666799999999999999999999999997433110                       011235677888      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                            ..|.+++|  +++|.+|++|+..+.+.+|.+.+++.+.+..+.              +.|..+.++|++.....
T Consensus       252 ------~~V~~L~f--S~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLg--------------s~I~~i~vS~ds~~~sl  309 (792)
T KOG1963|consen  252 ------DEVNSLSF--SSDGAYLLSGGREGVLVLWQLETGKKQFLPRLG--------------SPILHIVVSPDSDLYSL  309 (792)
T ss_pred             ------cccceeEE--ecCCceEeecccceEEEEEeecCCCcccccccC--------------CeeEEEEEcCCCCeEEE
Confidence                  89999999  899999999999999999999998855555543              78899999999988877


Q ss_pred             ceeeccceEEEEeecccccceeeEEe-------ecCCCCCeeEEEeCCCCCEEEE-EcCCeEEEEeC-------------
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVY-------PHAHDFNINSISNNSDCETFVS-ADDLRINLWNL-------------  246 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~-~~d~~i~lwd~-------------  246 (432)
                      ...  |+.+.+-..........+..+       +....+-.+.++++|.-+.++. |..|.|.+||+             
T Consensus       310 ~~~--DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~  387 (792)
T KOG1963|consen  310 VLE--DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCD  387 (792)
T ss_pred             Eec--CceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEe
Confidence            776  777777665321111111111       0111222333444442222222 24444444443             


Q ss_pred             --------------------------------------------------CCCCceeeEeecCCCCcCCCCcceEEEEEc
Q 014005          247 --------------------------------------------------EISDQCFNIVDMKPSNMDDLTEVITSAEFH  276 (432)
Q Consensus       247 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  276 (432)
                                                                        . ....-.++  .......|...+...++.
T Consensus       388 ~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n-~~~kt~~L--~T~I~~PH~~~~vat~~~  464 (792)
T KOG1963|consen  388 ENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN-PNSKTFIL--NTKINNPHGNAFVATIFL  464 (792)
T ss_pred             ecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc-CCcceeEE--EEEEecCCCceeEEEEEe
Confidence                                                              3 11100000  111124566655555554


Q ss_pred             -CCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          277 -PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       277 -p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                       |.....+++++.||.+++|-+...+...+.-..+..|..     ..|  |..+++.++|+.||..|+.+-+++|.+||.
T Consensus       465 ~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i-----~sy--~k~~i~a~~fs~dGslla~s~~~~Itiwd~  537 (792)
T KOG1963|consen  465 NPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI-----GSY--HKTPITALCFSQDGSLLAVSFDDTITIWDY  537 (792)
T ss_pred             cCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee-----ecc--ccCcccchhhcCCCcEEEEecCCEEEEecC
Confidence             333238999999999999988543321110111111100     001  367899999999999999998899999999

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.70  E-value=6.8e-14  Score=127.41  Aligned_cols=213  Identities=12%  Similarity=0.108  Sum_probs=134.8

Q ss_pred             cceeEEEEEEcCCCCEEEEEe-CCCeEEEEEcc-CcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          114 EKINRVRWCAAPNGSMFILST-NDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                      .....+++  +|++++|++++ .++.|.+|++. .+.+........ .           +....++++|++++++.+...
T Consensus        35 ~~~~~l~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~-----------~~p~~i~~~~~g~~l~v~~~~  100 (330)
T PRK11028         35 GQVQPMVI--SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-P-----------GSPTHISTDHQGRFLFSASYN  100 (330)
T ss_pred             CCCccEEE--CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-C-----------CCceEEEECCCCCEEEEEEcC
Confidence            45667889  89999887764 57889999996 344333222211 1           345678999999988887643


Q ss_pred             ccceEEEEeecccc-cceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          192 ENMATKIANVGNSV-HARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       192 ~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                       ++.+.+|+++... .......+  .+......++++|++++++++  .++.|.+||++..+...... ....... ...
T Consensus       101 -~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~~~~~-~g~  175 (330)
T PRK11028        101 -ANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAEVTTV-EGA  175 (330)
T ss_pred             -CCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCceecC-CCC
Confidence             7899999986321 11223322  233456788999999988765  78999999998423221100 0000011 123


Q ss_pred             ceEEEEEcCCCCcEEEEEeC-CCeEEEEEccc--cccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005          269 VITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~-dg~i~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                      ..+.+.|+|++ ++++++.. ++.|.+||+..  ++.  +....+..++....       .......+.++|||++|+++
T Consensus       176 ~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~--~~~~~~~~~p~~~~-------~~~~~~~i~~~pdg~~lyv~  245 (330)
T PRK11028        176 GPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEI--ECVQTLDMMPADFS-------DTRWAADIHITPDGRHLYAC  245 (330)
T ss_pred             CCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCE--EEEEEEecCCCcCC-------CCccceeEEECCCCCEEEEe
Confidence            46789999999 88877765 89999999974  221  11222222111000       01234468999999999886


Q ss_pred             e--CCeEEEEec
Q 014005          346 D--YMNLKVFRY  355 (432)
Q Consensus       346 ~--~~~i~iwd~  355 (432)
                      .  ++.|.+|++
T Consensus       246 ~~~~~~I~v~~i  257 (330)
T PRK11028        246 DRTASLISVFSV  257 (330)
T ss_pred             cCCCCeEEEEEE
Confidence            3  389999998

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.70  E-value=4.3e-15  Score=122.17  Aligned_cols=208  Identities=15%  Similarity=0.204  Sum_probs=145.8

Q ss_pred             cceeEEEEEEcCCC---CEEEEEeCCCeEEEEEccC--cceee--eeecCCCCccccccccccccccccccCCCC-Ccce
Q 014005          114 EKINRVRWCAAPNG---SMFILSTNDKTIKLWKVRD--QKVKK--IKEMDHFPFVSSENTLLAEKNFMNEHNPPS-FAHG  185 (432)
Q Consensus       114 ~~v~~l~~~~s~~~---~~l~s~~~d~~i~iwd~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~  185 (432)
                      .+++.+.|.|++.|   ++||+++  ..+++|.+..  .+...  ....+...+.        ..++++..|+.- ..++
T Consensus        97 YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~--------~aPlTSFDWne~dp~~i  166 (364)
T KOG0290|consen   97 YPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEF--------CAPLTSFDWNEVDPNLI  166 (364)
T ss_pred             CCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCccccc--------CCcccccccccCCccee
Confidence            89999999665443   3465554  4799999974  33221  1111112222        267788888654 4566


Q ss_pred             ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (432)
                      .+.+.  |.+..|||++.+..+.....+ -+|+..|..++|...+. .+|+. .||.+++||++.-....-+++ .    
T Consensus       167 gtSSi--DTTCTiWdie~~~~~~vkTQL-IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE-~----  238 (364)
T KOG0290|consen  167 GTSSI--DTTCTIWDIETGVSGTVKTQL-IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE-D----  238 (364)
T ss_pred             Eeecc--cCeEEEEEEeeccccceeeEE-EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec-C----
Confidence            66666  999999999954333344445 68999999999998655 45555 999999999993333322331 1    


Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEeCC-CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC-CCE
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQH  341 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d-g~~  341 (432)
                      .....+...++|++..++++|+-..| ..|.|.|+|.-...   +..+++|             .+.|++++|.|. +..
T Consensus       239 p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp---va~L~~H-------------~a~VNgIaWaPhS~~h  302 (364)
T KOG0290|consen  239 PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP---VARLRNH-------------QASVNGIAWAPHSSSH  302 (364)
T ss_pred             CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc---eehhhcC-------------cccccceEecCCCCce
Confidence            11245788999999888899886655 47999999964432   6888887             899999999997 457


Q ss_pred             EEEe-eCCeEEEEec
Q 014005          342 LLSR-DYMNLKVFRY  355 (432)
Q Consensus       342 l~s~-~~~~i~iwd~  355 (432)
                      |+++ +|..+-+||+
T Consensus       303 ictaGDD~qaliWDl  317 (364)
T KOG0290|consen  303 ICTAGDDCQALIWDL  317 (364)
T ss_pred             eeecCCcceEEEEec
Confidence            7775 5599999999

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=6.5e-16  Score=137.36  Aligned_cols=237  Identities=22%  Similarity=0.295  Sum_probs=160.0

Q ss_pred             CCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005           24 NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (432)
Q Consensus        24 ~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~  103 (432)
                      .+.++.+|++.|+|++|+.+|.+|++|+.|-.+.|||.-..+.+                          ...-.||.  
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--------------------------hsI~TgHt--   93 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--------------------------HSISTGHT--   93 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhccee--------------------------eeeecccc--
Confidence            34567789999999999999999999999999999998765432                          12345898  


Q ss_pred             ccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (432)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  183 (432)
                                ..|.++.|.|..+.+.+++|..|..|+++|+...+-..   ..                           
T Consensus        94 ----------aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~---~d---------------------------  133 (758)
T KOG1310|consen   94 ----------ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGG---MD---------------------------  133 (758)
T ss_pred             ----------cceeEEeeeccCCCeEEEeccCcceEEEEecccccccc---cc---------------------------
Confidence                      99999999998888899999999999999997543110   00                           


Q ss_pred             ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCCCCCceeeEeecCC-
Q 014005          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKP-  260 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~-  260 (432)
                               +|           .....+.+ ..|...|..++..|++ ..+.++ .||+++-+|++-...|-...+... 
T Consensus       134 ---------~~-----------~~~~~~~~-~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~  192 (758)
T KOG1310|consen  134 ---------HG-----------MEETTRCW-SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI  192 (758)
T ss_pred             ---------cC-----------ccchhhhh-hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence                     00           00111222 5788899999999998 566777 999999999983222211100000 


Q ss_pred             -CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc---ccc------------ccCCc----
Q 014005          261 -SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD---AAE------------SHGSK----  320 (432)
Q Consensus       261 -~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---h~~------------~~~~~----  320 (432)
                       ......--...++..+|..+.+||+|+.|--.++||.|...      +.+..   |..            .|...    
T Consensus       193 l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~l------ks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~  266 (758)
T KOG1310|consen  193 LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVL------KSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQ  266 (758)
T ss_pred             HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhc------cCCCCCccccCCCCcccchhheecCccccCcc
Confidence             01111123467899999998999999999999999965321      11111   000            01110    


Q ss_pred             cceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          321 SFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       321 ~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                      ....-....++-++|+|+|.-|+.. +...|+++|+
T Consensus       267 gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdv  302 (758)
T KOG1310|consen  267 GNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDV  302 (758)
T ss_pred             cccccceeeeEEEEECCCCcEEEEeeCCeEEEEEee
Confidence            0010011236778999999766553 4479999999

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.70  E-value=1.7e-15  Score=129.91  Aligned_cols=258  Identities=15%  Similarity=0.216  Sum_probs=163.7

Q ss_pred             chhhccccchhhhhhhhcCCC------CCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhh
Q 014005            4 NREEASASLEWKCSQAFGERN------PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSEL   77 (432)
Q Consensus         4 ~~~~~~~~~~w~~~~~~~~~~------~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~   77 (432)
                      .++.+...+.|+......+..      ...+-+|..+|+++.|+|+|+.||+|+.+|.|.+|....-...    ....+.
T Consensus        31 T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~----~~d~e~  106 (434)
T KOG1009|consen   31 TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF----DADTEA  106 (434)
T ss_pred             cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc----cccchh
Confidence            346677888998886544332      1223478999999999999999999999999999997742111    000010


Q ss_pred             hccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCC
Q 014005           78 EKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH  157 (432)
Q Consensus        78 ~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  157 (432)
                      +       ...+.+.....+.+|.            +.|+.++|  +|++.++++++.|+.+++||+..|++...  ...
T Consensus       107 ~-------~~ke~w~v~k~lr~h~------------~diydL~W--s~d~~~l~s~s~dns~~l~Dv~~G~l~~~--~~d  163 (434)
T KOG1009|consen  107 D-------LNKEKWVVKKVLRGHR------------DDIYDLAW--SPDSNFLVSGSVDNSVRLWDVHAGQLLAI--LDD  163 (434)
T ss_pred             h-------hCccceEEEEEecccc------------cchhhhhc--cCCCceeeeeeccceEEEEEeccceeEee--ccc
Confidence            0       1122456667888898            99999999  89999999999999999999999985544  333


Q ss_pred             CCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccc------------------eeeEEee-cCCC
Q 014005          158 FPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA------------------RCQKVYP-HAHD  218 (432)
Q Consensus       158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~------------------~~~~~~~-~~~~  218 (432)
                      |.           ..+..++|.|-.+++.+-+.  |...+.+.+......                  ...+.+. ....
T Consensus       164 h~-----------~yvqgvawDpl~qyv~s~s~--dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlk  230 (434)
T KOG1009|consen  164 HE-----------HYVQGVAWDPLNQYVASKSS--DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLK  230 (434)
T ss_pred             cc-----------cccceeecchhhhhhhhhcc--CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchh
Confidence            43           56788888888888877766  443333333211111                  1111110 0011


Q ss_pred             CCeeEEEeCCCCCEEEEE-c----CCe-----EEEEeCCCCCceee-----------------EeecCCCC---------
Q 014005          219 FNINSISNNSDCETFVSA-D----DLR-----INLWNLEISDQCFN-----------------IVDMKPSN---------  262 (432)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~-~----d~~-----i~lwd~~~~~~~~~-----------------~~~~~~~~---------  262 (432)
                      .....++|+|+|..+++. .    ++.     .++++-....++..                 .++++|..         
T Consensus       231 sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lp  310 (434)
T KOG1009|consen  231 SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLP  310 (434)
T ss_pred             hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccc
Confidence            234456777888766653 1    222     23333211000000                 00111110         


Q ss_pred             ---------------------------cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          263 ---------------------------MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       263 ---------------------------~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                                                 -.-|-..|+.++|+++| ..|+..+.||...+.-+...++
T Consensus       311 yrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg-~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  311 YRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDG-SVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             cceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCC-cEEEEeccCCceEEEEEcchhc
Confidence                                       12356789999999999 9999999999988888776554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.69  E-value=1.8e-14  Score=139.62  Aligned_cols=284  Identities=14%  Similarity=0.110  Sum_probs=170.7

Q ss_pred             cccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccc
Q 014005            9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTS   87 (432)
Q Consensus         9 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (432)
                      +..+-|+.....-    .+...|+..|..++.++.. .++++||.||+|++|+...-...             .      
T Consensus      1029 ~p~~gW~p~G~lV----AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~-------------~------ 1085 (1431)
T KOG1240|consen 1029 SPPPGWNPRGILV----AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE-------------G------ 1085 (1431)
T ss_pred             CCCCCCCccceEe----ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC-------------c------
Confidence            3344566664432    4455678888888887655 99999999999999998653311             0      


Q ss_pred             cCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeee-----eecCCCCccc
Q 014005           88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI-----KEMDHFPFVS  162 (432)
Q Consensus        88 ~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~  162 (432)
                       ..++...++.--.            ..+.++..+  ++++.+|.++.||.|++.++......+.     ...+.+    
T Consensus      1086 -~s~rS~ltys~~~------------sr~~~vt~~--~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~---- 1146 (1431)
T KOG1240|consen 1086 -GSARSELTYSPEG------------SRVEKVTMC--GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLK---- 1146 (1431)
T ss_pred             -ceeeeeEEEeccC------------CceEEEEec--cCCCeEEEEcCCCeEEEEEccccccccceeeeeeccccc----
Confidence             0122222333222            678888884  6789999999999999999976321111     111111    


Q ss_pred             cccccccccccccc-cCCCC--CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC
Q 014005          163 SENTLLAEKNFMNE-HNPPS--FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD  238 (432)
Q Consensus       163 ~~~~~~~~~~i~~~-~~~~~--~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d  238 (432)
                            ..+.+.++ +|...  ...++.+..  .+.+..||.+.......++.  ....+.|++++.+|.+.+++.| ..
T Consensus      1147 ------~~g~vv~m~a~~~~~~S~~lvy~T~--~~~iv~~D~r~~~~~w~lk~--~~~hG~vTSi~idp~~~WlviGts~ 1216 (1431)
T KOG1240|consen 1147 ------KDGVVVSMHAFTAIVQSHVLVYATD--LSRIVSWDTRMRHDAWRLKN--QLRHGLVTSIVIDPWCNWLVIGTSR 1216 (1431)
T ss_pred             ------CCCceEEeecccccccceeEEEEEe--ccceEEecchhhhhHHhhhc--CccccceeEEEecCCceEEEEecCC
Confidence                  11333333 22222  124444444  78899999885433222222  2345789999999999999999 99


Q ss_pred             CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCC--cEEEEE-e-CCCeEEEEEccccccccccceeecccc
Q 014005          239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC--NLLAYS-S-SRGFVRLVDMRQSALCDHSARILRDAA  314 (432)
Q Consensus       239 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~-~-~dg~i~iwd~~~~~~~~~~~~~~~~h~  314 (432)
                      |.+.+||++. +..+..+     . .++..+|+.+..+|..+  ...+++ + ..+.|.+|++.+|..    ...+-...
T Consensus      1217 G~l~lWDLRF-~~~i~sw-----~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~----~~vl~~s~ 1285 (1431)
T KOG1240|consen 1217 GQLVLWDLRF-RVPILSW-----E-HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR----QTVLWASD 1285 (1431)
T ss_pred             ceEEEEEeec-Cceeecc-----c-CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc----eEEEEcCC
Confidence            9999999994 4455444     1 34457788888877553  344444 4 578899999998753    23333210


Q ss_pred             c-------ccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          315 E-------SHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       315 ~-------~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                      .       .|...+.-+.....+.+.--.++|-.+.+|+|..|+.||.
T Consensus      1286 ~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1286 GAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred             CCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence            0       0111000011112233333333443444457799999999

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=3.9e-15  Score=139.80  Aligned_cols=201  Identities=12%  Similarity=0.063  Sum_probs=133.8

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCC---CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                      ..+...+|  +|||+.++.++.+   ..|.+||+.+++...+....              +....++|+|++..++.+..
T Consensus       204 ~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~--------------g~~~~~~wSPDG~~La~~~~  267 (429)
T PRK01742        204 QPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR--------------GHNGAPAFSPDGSRLAFASS  267 (429)
T ss_pred             CccccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC--------------CccCceeECCCCCEEEEEEe
Confidence            78899999  8999999887654   47999999887755544332              23346899999998877542


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                       .++...||.++.. .+.. ..+ ..+...+.+..|+|||+.++.+  .++...+|+++..+.....+        .+..
T Consensus       268 -~~g~~~Iy~~d~~-~~~~-~~l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--------~~~~  335 (429)
T PRK01742        268 -KDGVLNIYVMGAN-GGTP-SQL-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--------GGRG  335 (429)
T ss_pred             -cCCcEEEEEEECC-CCCe-Eee-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--------cCCC
Confidence             1565555544321 2333 333 4566678899999999987754  67888888876333333322        2222


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-C
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~  347 (432)
                        ....|+|+| +.|+.++.++ +.+||+.+++.     ..+..+              .....+.|+|||++|+.++ +
T Consensus       336 --~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~-----~~lt~~--------------~~~~~~~~sPdG~~i~~~s~~  392 (429)
T PRK01742        336 --YSAQISADG-KTLVMINGDN-VVKQDLTSGST-----EVLSST--------------FLDESPSISPNGIMIIYSSTQ  392 (429)
T ss_pred             --CCccCCCCC-CEEEEEcCCC-EEEEECCCCCe-----EEecCC--------------CCCCCceECCCCCEEEEEEcC
Confidence              347899999 8888877765 55699988764     333221              1234678999999999864 4


Q ss_pred             CeEEEEec-----CcceeEeecc
Q 014005          348 MNLKVFRY-----EPVMTLSFCG  365 (432)
Q Consensus       348 ~~i~iwd~-----~~~~~~~~~~  365 (432)
                      +...+|++     +..+.+..+.
T Consensus       393 g~~~~l~~~~~~G~~~~~l~~~~  415 (429)
T PRK01742        393 GLGKVLQLVSADGRFKARLPGSD  415 (429)
T ss_pred             CCceEEEEEECCCCceEEccCCC
Confidence            77777765     4555555444

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.68  E-value=1.4e-16  Score=138.87  Aligned_cols=229  Identities=14%  Similarity=0.135  Sum_probs=181.8

Q ss_pred             EEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhc
Q 014005           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (432)
Q Consensus        35 V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  114 (432)
                      -..+.|+.+|.+|+.|+.-|.+-.+|..++++.                           ..+.-.             .
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~---------------------------~Ei~v~-------------E  171 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH---------------------------FEINVM-------------E  171 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceee---------------------------eeeehh-------------h
Confidence            467899999999999999999999999988743                           222221             6


Q ss_pred             ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  194 (432)
                      .|.++.|+  .+.++||++- .+.+.|||-.+-++.++..+               ..+..+.|-|-.-++++++.  .|
T Consensus       172 tv~Dv~~L--Hneq~~AVAQ-K~y~yvYD~~GtElHClk~~---------------~~v~rLeFLPyHfLL~~~~~--~G  231 (545)
T KOG1272|consen  172 TVRDVTFL--HNEQFFAVAQ-KKYVYVYDNNGTELHCLKRH---------------IRVARLEFLPYHFLLVAASE--AG  231 (545)
T ss_pred             hhhhhhhh--cchHHHHhhh-hceEEEecCCCcEEeehhhc---------------Cchhhhcccchhheeeeccc--CC
Confidence            78999994  5666777775 57899999887776666555               57888999999888888888  89


Q ss_pred             eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEE
Q 014005          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (432)
Q Consensus       195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  273 (432)
                      .++--|+.   .++.+..+ ....+.+..++-+|-+..+-+| .+|+|.+|... ...++..       +..|.++|.++
T Consensus       232 ~L~Y~DVS---~GklVa~~-~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~-skePLvK-------iLcH~g~V~si  299 (545)
T KOG1272|consen  232 FLKYQDVS---TGKLVASI-RTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN-SKEPLVK-------ILCHRGPVSSI  299 (545)
T ss_pred             ceEEEeec---hhhhhHHH-HccCCccchhhcCCccceEEEcCCCceEEecCCC-CcchHHH-------HHhcCCCcceE
Confidence            99999998   77777776 5667788899999999899999 99999999998 4444432       37999999999


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEE
Q 014005          274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF  353 (432)
Q Consensus       274 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iw  353 (432)
                      +++++| +++||++.|..++|||+|.-..    +.++..              ..+...+++|..| +||.+-...+.||
T Consensus       300 Av~~~G-~YMaTtG~Dr~~kIWDlR~~~q----l~t~~t--------------p~~a~~ls~Sqkg-lLA~~~G~~v~iw  359 (545)
T KOG1272|consen  300 AVDRGG-RYMATTGLDRKVKIWDLRNFYQ----LHTYRT--------------PHPASNLSLSQKG-LLALSYGDHVQIW  359 (545)
T ss_pred             EECCCC-cEEeecccccceeEeeeccccc----cceeec--------------CCCcccccccccc-ceeeecCCeeeee
Confidence            999999 9999999999999999997543    233333              2467789999877 4555433688999


Q ss_pred             ec
Q 014005          354 RY  355 (432)
Q Consensus       354 d~  355 (432)
                      .=
T Consensus       360 ~d  361 (545)
T KOG1272|consen  360 KD  361 (545)
T ss_pred             hh
Confidence            65

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.68  E-value=5.7e-14  Score=132.49  Aligned_cols=246  Identities=21%  Similarity=0.344  Sum_probs=185.0

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ...|.+.|.++.|.+.+..++.++.|+.+.+|+......                          ....+.++..     
T Consensus        61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------------~~~~~~~~~~-----  109 (466)
T COG2319          61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK--------------------------LIKSLEGLHD-----  109 (466)
T ss_pred             eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce--------------------------eEEEEeccCC-----
Confidence            457889999999999999999999999999999887630                          1234444330     


Q ss_pred             chhhhhcceeEEEEEEcCCCC-EEEEEeC-CCeEEEEEccC-cceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          108 KSLEIEEKINRVRWCAAPNGS-MFILSTN-DKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~-~l~s~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                            ..+..+.+. ++++. .++..+. |+.+.+|+... ..  .......+.           ..+..+.|++++..
T Consensus       110 ------~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~-----------~~v~~~~~~~~~~~  169 (466)
T COG2319         110 ------SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGK--LIRTLEGHS-----------ESVTSLAFSPDGKL  169 (466)
T ss_pred             ------CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCe--EEEEEecCc-----------ccEEEEEECCCCCE
Confidence                  256677775 56776 4555444 99999999987 33  222222233           67778999999987


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceee-EeecCCC
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFN-IVDMKPS  261 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~-~~~~~~~  261 (432)
                      ++.+.. .++.+++|+..   .......+ .+|...+.+++|+|++. .++++ .|+.+++||.. .+.... .+     
T Consensus       170 ~~~~~~-~~~~~~~~~~~---~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~~~~~~-----  238 (466)
T COG2319         170 LASGSS-LDGTIKLWDLR---TGKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRSTL-----  238 (466)
T ss_pred             EEecCC-CCCceEEEEcC---CCceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcEEeeec-----
Confidence            766653 48999999998   56677777 67999999999999998 66665 89999999888 555554 33     


Q ss_pred             CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (432)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~  341 (432)
                        .+|.... ...|+|++ ..+++++.|+.+++||++.....   ...+..|             ...+.++.|+|++..
T Consensus       239 --~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~-------------~~~v~~~~~~~~~~~  298 (466)
T COG2319         239 --SGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL---LRTLSGH-------------SSSVLSVAFSPDGKL  298 (466)
T ss_pred             --CCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE---EEEEecC-------------CccEEEEEECCCCCE
Confidence              6776664 33899998 89999999999999999865531   2333444             678999999998888


Q ss_pred             EEEe-eCCeEEEEec
Q 014005          342 LLSR-DYMNLKVFRY  355 (432)
Q Consensus       342 l~s~-~~~~i~iwd~  355 (432)
                      ++++ .++.+.+||.
T Consensus       299 ~~~~~~d~~~~~~~~  313 (466)
T COG2319         299 LASGSSDGTVRLWDL  313 (466)
T ss_pred             EEEeeCCCcEEEEEc
Confidence            8886 4488999988

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.67  E-value=1.8e-14  Score=134.67  Aligned_cols=252  Identities=9%  Similarity=0.039  Sum_probs=164.1

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc--eecceee
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH--GYHLEWT  191 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~  191 (432)
                      ..|.++.|+| .+..+++.|+.+|.|.+||+..+.........       ........++..+.|..+...  +++++. 
T Consensus       243 s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls-------~~~~sh~~~v~~vvW~~~~~~~~f~s~ss-  313 (555)
T KOG1587|consen  243 SEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS-------ALEVSHSEPVTAVVWLQNEHNTEFFSLSS-  313 (555)
T ss_pred             CceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCCcccc-------cccccCCcCeEEEEEeccCCCCceEEEec-
Confidence            6899999975 46678899999999999999877642211111       111223367777777655444  677776 


Q ss_pred             ccceEEEEeecccccce---eeEEee-----cCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCcee-eEeecCC
Q 014005          192 ENMATKIANVGNSVHAR---CQKVYP-----HAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCF-NIVDMKP  260 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~---~~~~~~-----~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~-~~~~~~~  260 (432)
                       ||.|..|+++......   +.....     ......++++.|.+. -..+++| ++|.|.--+........ ..+  ++
T Consensus       314 -DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~--~~  390 (555)
T KOG1587|consen  314 -DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSY--KG  390 (555)
T ss_pred             -CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccc--cc
Confidence             9999999887532111   111110     122346888999885 4567788 99988763332111111 111  11


Q ss_pred             C-CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc-ccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005          261 S-NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (432)
Q Consensus       261 ~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d  338 (432)
                      . ....|.+.|+++.++|-+...|++++ |-+++||... ....    +..+..+             ...+++++|||.
T Consensus       391 ~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~P----l~~~~~~-------------~~~v~~vaWSpt  452 (555)
T KOG1587|consen  391 HSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASP----LLSLDSS-------------PDYVTDVAWSPT  452 (555)
T ss_pred             cccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCc----chhhhhc-------------cceeeeeEEcCc
Confidence            1 34678899999999999866666666 9999999977 3332    4555553             566999999998


Q ss_pred             CCE-EEEee-CCeEEEEec-----CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005          339 GQH-LLSRD-YMNLKVFRY-----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       339 g~~-l~s~~-~~~i~iwd~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                      ..- +++++ +|.+.+||+     .|+.+.+....           .++......+.-.++.|.+.|++.+|+..
T Consensus       453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~-----------~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSP-----------ALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             CceEEEEEcCCCceehhhhhccccCCccccccccc-----------ccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            654 45565 499999999     56666555422           22333333445569999999999999954

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.67  E-value=2.4e-15  Score=133.49  Aligned_cols=251  Identities=17%  Similarity=0.212  Sum_probs=163.1

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCC--CCccccc---------hhhhcccccc----------cccc
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNT--PNQHISR---------SELEKQMDFT----------STSH   88 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~---------~~~~~~~~~~----------~~~~   88 (432)
                      .|+..|.|+.|+.+...+.+++.+..+.-|++.+....  ..+....         ..-.+.+...          ...+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            67778889999998887777665555555555443211  0000000         0000000000          0111


Q ss_pred             CCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccc
Q 014005           89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL  168 (432)
Q Consensus        89 p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  168 (432)
                      .+.+.-....+|.            +.+.+-.|  +|||.-|++++.||.|++|.-. |.+.....-+            
T Consensus        92 k~~rVE~sv~AH~------------~A~~~gRW--~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~------------  144 (737)
T KOG1524|consen   92 KSARVERSISAHA------------AAISSGRW--SPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQN------------  144 (737)
T ss_pred             ccchhhhhhhhhh------------hhhhhccc--CCCCceeeeecCCceEEEEecc-chHHHHHhhc------------
Confidence            1223333445555            88999999  8999999999999999999854 3322211111            


Q ss_pred             cccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCC
Q 014005          169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE  247 (432)
Q Consensus       169 ~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~  247 (432)
                       ..+|++++|.|+...++-+.   .+.+.|-.+..  ..++++ . ..|++-|.++.|++..+.+++| .|-..++||-.
T Consensus       145 -~~~v~c~~W~p~S~~vl~c~---g~h~~IKpL~~--n~k~i~-W-kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~  216 (737)
T KOG1524|consen  145 -EESIRCARWAPNSNSIVFCQ---GGHISIKPLAA--NSKIIR-W-RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ  216 (737)
T ss_pred             -CceeEEEEECCCCCceEEec---CCeEEEeeccc--ccceeE-E-eccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence             26799999999977665544   45666655552  233333 3 6899999999999999999999 99999999998


Q ss_pred             CCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005          248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (432)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  327 (432)
                        +..+-.       ...|..+|++++|+|+  ..++.++.+ +.++   .+          ..               .
T Consensus       217 --G~~Lf~-------S~~~ey~ITSva~npd--~~~~v~S~n-t~R~---~~----------p~---------------~  256 (737)
T KOG1524|consen  217 --GANLFT-------SAAEEYAITSVAFNPE--KDYLLWSYN-TARF---SS----------PR---------------V  256 (737)
T ss_pred             --Cccccc-------CChhccceeeeeeccc--cceeeeeee-eeee---cC----------CC---------------c
Confidence              444432       2678889999999998  456666543 3331   11          11               4


Q ss_pred             cceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          328 ASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       328 ~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      ++|..++||+||..+++|.. |.+.+=-+
T Consensus       257 GSifnlsWS~DGTQ~a~gt~~G~v~~A~~  285 (737)
T KOG1524|consen  257 GSIFNLSWSADGTQATCGTSTGQLIVAYA  285 (737)
T ss_pred             cceEEEEEcCCCceeeccccCceEEEeee
Confidence            78999999999999999855 76655433

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=3.4e-14  Score=127.27  Aligned_cols=248  Identities=16%  Similarity=0.223  Sum_probs=174.4

Q ss_pred             CccccCCCcEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005           26 DEELQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (432)
Q Consensus        26 ~~~~~h~~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~  104 (432)
                      ...+.++..-+.|..+|||+|+ |+|..--.|++||+.+-.+                             .|.-|.   
T Consensus        45 iQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-----------------------------KFERhl---   92 (703)
T KOG2321|consen   45 IQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-----------------------------KFERHL---   92 (703)
T ss_pred             HHhcCCccccceeEecCCCcEEEEecccCCceEEEEccccee-----------------------------eeeecc---
Confidence            3456778889999999999985 7788888999999987542                             344454   


Q ss_pred             cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                      |        ..+..+..+ +.|-..++.-..|++|.+....+.. ..+. +.              ..-+++.++.-..-
T Consensus        93 D--------ae~V~feiL-sDD~SK~v~L~~DR~IefHak~G~h-y~~R-IP--------------~~GRDm~y~~~scD  147 (703)
T KOG2321|consen   93 D--------AEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKYGRH-YRTR-IP--------------KFGRDMKYHKPSCD  147 (703)
T ss_pred             c--------ccceeEEEe-ccchhhheEeecCceeeehhhcCee-eeee-cC--------------cCCccccccCCCcc
Confidence            1        344444443 5565566666778888876543221 1110 00              23345666555544


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (432)
                      ++.++.  ...|.-.+++   .++-+..| ....+.++++..++-..+|++| .+|.|..||.+ ......+++.... .
T Consensus       148 ly~~gs--g~evYRlNLE---qGrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR-~ksrv~~l~~~~~-v  219 (703)
T KOG2321|consen  148 LYLVGS--GSEVYRLNLE---QGRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR-DKSRVGTLDAASS-V  219 (703)
T ss_pred             EEEeec--CcceEEEEcc---cccccccc-ccccccceeeeecCccceEEecccCceEEEecch-hhhhheeeecccc-c
Confidence            555444  4566666777   66777777 5666899999999999999999 89999999999 5555555543322 2


Q ss_pred             CCCCc-----ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005          264 DDLTE-----VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (432)
Q Consensus       264 ~~~~~-----~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d  338 (432)
                      ..|.+     .|+++.|+.+| -.+++|..+|.|.|||+|..++     .....|.           ..-+|..+.|.+.
T Consensus       220 ~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~p-----l~~kdh~-----------~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  220 NSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKP-----LLVKDHG-----------YELPIKKLDWQDT  282 (703)
T ss_pred             CCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCc-----eeecccC-----------Cccceeeeccccc
Confidence            33333     49999999998 9999999999999999998775     3344441           1458899999776


Q ss_pred             --CCEEEEeeCCeEEEEec
Q 014005          339 --GQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       339 --g~~l~s~~~~~i~iwd~  355 (432)
                        +..++|.+...++|||-
T Consensus       283 ~~q~~v~S~Dk~~~kiWd~  301 (703)
T KOG2321|consen  283 DQQNKVVSMDKRILKIWDE  301 (703)
T ss_pred             CCCceEEecchHHhhhccc
Confidence              56788888799999999

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=6e-15  Score=126.12  Aligned_cols=250  Identities=14%  Similarity=0.084  Sum_probs=171.4

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcce----eeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV----KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                      +.|++|.|  +.++++|++|+.|..+++|.+..-..    +.+....          +...+.|.+++|+....++++|.
T Consensus        57 GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~----------~~H~SNIF~L~F~~~N~~~~SG~  124 (609)
T KOG4227|consen   57 GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME----------HPHRSNIFSLEFDLENRFLYSGE  124 (609)
T ss_pred             cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc----------CccccceEEEEEccCCeeEecCC
Confidence            99999999  88899999999999999999864321    2221111          11237899999999999999999


Q ss_pred             eeccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          190 WTENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      .  +++|.+.|++   +.+.+.++. ....+.|+.+..+|..+.|++. .++.|.+||.+........+     -.....
T Consensus       125 ~--~~~VI~HDiE---t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-----~~AN~~  194 (609)
T KOG4227|consen  125 R--WGTVIKHDIE---TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-----LPANSG  194 (609)
T ss_pred             C--cceeEeeecc---cceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee-----eecCCC
Confidence            9  9999999998   666666651 2234589999999999999988 99999999998322233322     113344


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-e
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D  346 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~  346 (432)
                      ....++.|+|..+.+|++++..+-+.+||++.....   +....+.  ..     ++.-.....++.|+|+|..+.+- -
T Consensus       195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~---~~~~~~~--~~-----L~~~~~~~M~~~~~~~G~Q~msiRR  264 (609)
T KOG4227|consen  195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP---VYQRSMF--KG-----LPQENTEWMGSLWSPSGNQFMSIRR  264 (609)
T ss_pred             ccceeeeecCCCceeEEeccccCCCCceeeccccch---HHhhhcc--cc-----CcccchhhhheeeCCCCCeehhhhc
Confidence            567889999999899999999999999999865431   1111110  00     00001223578899999887774 3


Q ss_pred             CCeEEEEec--CcceeEeecceeeeehhhhhcccccccc-cceeeE----EEEeecccceeeeec
Q 014005          347 YMNLKVFRY--EPVMTLSFCGIYVWILRQLQHSRFMSIY-ALSCVI----YIITTLYLINLSALS  404 (432)
Q Consensus       347 ~~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~g~~~~~i~~~~  404 (432)
                      ...-.+||+  ..+..++....         .+.+|... ..+|.|    .|++|+.+=.|++|.
T Consensus       265 ~~~P~~~D~~S~R~~V~k~D~N---------~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~Wk  320 (609)
T KOG4227|consen  265 GKCPLYFDFISQRCFVLKSDHN---------PNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWK  320 (609)
T ss_pred             cCCCEEeeeecccceeEeccCC---------CCcceeeeeeeeeeeecceeeeccCcccceEEEe
Confidence            356667888  23334443321         11222211 112222    499999999999998

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.65  E-value=2.8e-14  Score=119.43  Aligned_cols=254  Identities=14%  Similarity=0.185  Sum_probs=155.8

Q ss_pred             EEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcce
Q 014005           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (432)
Q Consensus        37 ~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (432)
                      -.+|||+|+++|+++.- .+.|-|.++-+..                           +.|.           .  -+.|
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~---------------------------qlf~-----------c--ldki   51 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH---------------------------QLFL-----------C--LDKI   51 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHH---------------------------HHHH-----------H--HHHh
Confidence            36799999999998765 7777777664322                           1111           0  1678


Q ss_pred             eEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee-cceeeccc
Q 014005          117 NRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY-HLEWTENM  194 (432)
Q Consensus       117 ~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~  194 (432)
                      .-|.|  ..|..+++.+ ..|+.|.+|++...+....  .+..+           .++..+.|+|+++.+. +..+  +-
T Consensus        52 ~yieW--~ads~~ilC~~yk~~~vqvwsl~Qpew~ck--Ideg~-----------agls~~~WSPdgrhiL~tseF--~l  114 (447)
T KOG4497|consen   52 VYIEW--KADSCHILCVAYKDPKVQVWSLVQPEWYCK--IDEGQ-----------AGLSSISWSPDGRHILLTSEF--DL  114 (447)
T ss_pred             hheee--eccceeeeeeeeccceEEEEEeecceeEEE--eccCC-----------CcceeeeECCCcceEeeeecc--ee
Confidence            88999  6777766555 7788999999987764332  22222           6788999999996555 4455  77


Q ss_pred             eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCe--EEE-----E------eCCC----------C
Q 014005          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INL-----W------NLEI----------S  249 (432)
Q Consensus       195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~--i~l-----w------d~~~----------~  249 (432)
                      .+.+|.+.   +.++...  ......+..++|+|+|++.+..  .|..  +.+     |      ++++          .
T Consensus       115 riTVWSL~---t~~~~~~--~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd  189 (447)
T KOG4497|consen  115 RITVWSLN---TQKGYLL--PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD  189 (447)
T ss_pred             EEEEEEec---cceeEEe--cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC
Confidence            99999998   4444333  2334456889999999987754  3321  000     1      1110          0


Q ss_pred             CceeeEeecCCC-C--cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccce------------------
Q 014005          250 DQCFNIVDMKPS-N--MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR------------------  308 (432)
Q Consensus       250 ~~~~~~~~~~~~-~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------  308 (432)
                      +..+..++-... .  .-...-.+..++|+|.+ ++|+.|+.|+.+|+.+--+.+...+...                  
T Consensus       190 g~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~  268 (447)
T KOG4497|consen  190 GNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS  268 (447)
T ss_pred             CcEEEEecchhhheeeeeeeccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence            111221110000 0  01112358889999998 9999999999998876554332110000                  


Q ss_pred             --------------eecccccccCCc------------------cceeeeecceeEEEEcCCCCEEEEeeC---CeEEEE
Q 014005          309 --------------ILRDAAESHGSK------------------SFFTEIIASISDIKFANDGQHLLSRDY---MNLKVF  353 (432)
Q Consensus       309 --------------~~~~h~~~~~~~------------------~~~~~~~~~v~~~~~s~dg~~l~s~~~---~~i~iw  353 (432)
                                    .++.|+ .+...                  .-++.....+..++||+|..|+++.+|   +.+.+|
T Consensus       269 ~~ql~~~cLsf~p~~~~a~~-~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~W  347 (447)
T KOG4497|consen  269 IVQLLHHCLSFTPTDLEAHI-WEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLW  347 (447)
T ss_pred             hhhhcccccccCCCccccCc-cccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEE
Confidence                          000110 00000                  122233457788999999999999754   899999


Q ss_pred             ec
Q 014005          354 RY  355 (432)
Q Consensus       354 d~  355 (432)
                      |+
T Consensus       348 dl  349 (447)
T KOG4497|consen  348 DL  349 (447)
T ss_pred             ec
Confidence            99

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.65  E-value=7e-14  Score=116.66  Aligned_cols=236  Identities=13%  Similarity=0.156  Sum_probs=152.8

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      ...+++|+.|...+++|..+| .|||+.+--+..                           ...+-+...          
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~---------------------------~~r~~~~~G----------   48 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKES---------------------------ASRQFIDGG----------   48 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhh---------------------------hhhccccCc----------
Confidence            455699999999999887664 899998753321                           011111100          


Q ss_pred             cceeEEEEEEcCCCCEE-EEEeCC------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          114 EKINRVRWCAAPNGSMF-ILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l-~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                      -.+.-+-|    -.+++ ++|+.+      ++|.|||=..........+.              ..|.++.+.++.-.++
T Consensus        49 ~~~veMLf----R~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~--------------~~I~~V~l~r~riVvv  110 (346)
T KOG2111|consen   49 FKIVEMLF----RSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFN--------------SEIKAVKLRRDRIVVV  110 (346)
T ss_pred             hhhhhHhh----hhceEEEecCCCCCCCCCceEEEEecccCcEEEEEEec--------------cceeeEEEcCCeEEEE
Confidence            01112222    12233 334333      57999994443322222222              5778888877654444


Q ss_pred             cceeeccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCCCCCc-eeeEeecCCCC
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQ-CFNIVDMKPSN  262 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~-~-~d~~i~lwd~~~~~~-~~~~~~~~~~~  262 (432)
                      .     .+.+.+|....+.  +.++.+. ........+++-..+...||. | .-|.|.+-|+..... .-.+       
T Consensus       111 l-----~~~I~VytF~~n~--k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~-------  176 (346)
T KOG2111|consen  111 L-----ENKIYVYTFPDNP--KLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSI-------  176 (346)
T ss_pred             e-----cCeEEEEEcCCCh--hheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceE-------
Confidence            4     6788999877432  2222221 222344555555545555554 4 789999999983332 1123       


Q ss_pred             cCCCCcceEEEEEcCCCCcEEEEEeCCCe-EEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (432)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~  341 (432)
                      +..|.+.|.+++++.+| .++|++|..|+ |||||..+|..    ++.++.-.           ....|.+++||||+.+
T Consensus       177 I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~----l~E~RRG~-----------d~A~iy~iaFSp~~s~  240 (346)
T KOG2111|consen  177 INAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTL----LQELRRGV-----------DRADIYCIAFSPNSSW  240 (346)
T ss_pred             EEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcE----eeeeecCC-----------chheEEEEEeCCCccE
Confidence            38999999999999999 99999999996 79999999987    45554301           1368999999999999


Q ss_pred             EEEeeC-CeEEEEec
Q 014005          342 LLSRDY-MNLKVFRY  355 (432)
Q Consensus       342 l~s~~~-~~i~iwd~  355 (432)
                      ||.++| |++.||.+
T Consensus       241 LavsSdKgTlHiF~l  255 (346)
T KOG2111|consen  241 LAVSSDKGTLHIFSL  255 (346)
T ss_pred             EEEEcCCCeEEEEEe
Confidence            999988 99999999

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.4e-14  Score=136.10  Aligned_cols=218  Identities=12%  Similarity=0.146  Sum_probs=145.6

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEeccc---ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ..|...+.++.|||+|+.|+.++.+   ..|.+||+.+++..                         .+..+.+|.    
T Consensus       200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-------------------------~l~~~~g~~----  250 (429)
T PRK01742        200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-------------------------VVASFRGHN----  250 (429)
T ss_pred             ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-------------------------EEecCCCcc----
Confidence            3567789999999999999987654   36999999876421                         222333333    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEe-CCCeEEEE--EccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLW--KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  182 (432)
                                 ..++|  +|||+.|+.++ .+|.+.||  |+.++....+..   +.           ..+....|+|++
T Consensus       251 -----------~~~~w--SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~---~~-----------~~~~~~~wSpDG  303 (429)
T PRK01742        251 -----------GAPAF--SPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTS---GA-----------GNNTEPSWSPDG  303 (429)
T ss_pred             -----------CceeE--CCCCCEEEEEEecCCcEEEEEEECCCCCeEeecc---CC-----------CCcCCEEECCCC
Confidence                       46789  89999888764 67766655  555665444322   22           456788999999


Q ss_pred             cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC
Q 014005          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (432)
Q Consensus       183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~  261 (432)
                      ..++..+. .++...+|+++....  ....+  .+..  ....|+|+|+.++.+ .+ .+.+||+. ++......     
T Consensus       304 ~~i~f~s~-~~g~~~I~~~~~~~~--~~~~l--~~~~--~~~~~SpDG~~ia~~~~~-~i~~~Dl~-~g~~~~lt-----  369 (429)
T PRK01742        304 QSILFTSD-RSGSPQVYRMSASGG--GASLV--GGRG--YSAQISADGKTLVMINGD-NVVKQDLT-SGSTEVLS-----  369 (429)
T ss_pred             CEEEEEEC-CCCCceEEEEECCCC--CeEEe--cCCC--CCccCCCCCCEEEEEcCC-CEEEEECC-CCCeEEec-----
Confidence            98765542 156788888763211  12222  2222  457899999999888 54 46669998 44432211     


Q ss_pred             CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc--ccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (432)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d  338 (432)
                        ...  ...++.|+|++ ++|++++.++.+.+|++.  +|+.    .+.+..|             .+.+...+|+|-
T Consensus       370 --~~~--~~~~~~~sPdG-~~i~~~s~~g~~~~l~~~~~~G~~----~~~l~~~-------------~g~~~~p~wsp~  426 (429)
T PRK01742        370 --STF--LDESPSISPNG-IMIIYSSTQGLGKVLQLVSADGRF----KARLPGS-------------DGQVKFPAWSPY  426 (429)
T ss_pred             --CCC--CCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCc----eEEccCC-------------CCCCCCcccCCC
Confidence              111  23467899999 999999999988888764  3443    4667665             567888999984

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.64  E-value=2.3e-14  Score=130.57  Aligned_cols=232  Identities=15%  Similarity=0.173  Sum_probs=156.7

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc--ccccCCcceeee-----eecCC
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT--STSHPEYRYKTE-----FQSHE  101 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~-----~~~h~  101 (432)
                      -.|.+.|+|++|+.+|+.+|+|+.|..|.+|+..-...++.         .+...+  ++|.|-...+.+     |.--.
T Consensus        50 KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY---------SH~D~IQCMsFNP~~h~LasCsLsdFglWS  120 (1081)
T KOG1538|consen   50 KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY---------SHNDAIQCMSFNPITHQLASCSLSDFGLWS  120 (1081)
T ss_pred             ccccceEEEEEEccCCceeccCCCceeEEEecccccceeee---------ccCCeeeEeecCchHHHhhhcchhhccccC
Confidence            36999999999999999999999999999998654332210         112222  445552111111     11111


Q ss_pred             ccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC
Q 014005          102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (432)
Q Consensus       102 ~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  181 (432)
                      ++...+........+.+.+|  ..||++|+.|-.+|+|.+-+-....-..+....+.           +++|.+++|+|.
T Consensus       121 ~~qK~V~K~kss~R~~~CsW--tnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~-----------Nspiwsi~~~p~  187 (1081)
T KOG1538|consen  121 PEQKSVSKHKSSSRIICCSW--TNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGS-----------NSPIWSICWNPS  187 (1081)
T ss_pred             hhhhhHHhhhhheeEEEeee--cCCCcEEEEeccCceEEeecCCCCcceEEeCCCCC-----------CCCceEEEecCC
Confidence            11111222222367889999  89999999999999999986543332223222222           488999999987


Q ss_pred             Ccc-----eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeE
Q 014005          182 FAH-----GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI  255 (432)
Q Consensus       182 ~~~-----~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~  255 (432)
                      ...     +.....  +.++.++.+..    +.+..- ....-...|+.+.++|.+++.| .|+.+.+|..+  +-.+-+
T Consensus       188 sg~G~~di~aV~DW--~qTLSFy~LsG----~~Igk~-r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~--GvrLGT  258 (1081)
T KOG1538|consen  188 SGEGRNDILAVADW--GQTLSFYQLSG----KQIGKD-RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD--GVRLGT  258 (1081)
T ss_pred             CCCCccceEEEEec--cceeEEEEecc----eeeccc-ccCCCCchhheeccCCcEEEEccCCCceEEEeec--CeEEee
Confidence            542     222223  55677777652    222211 3344567799999999999999 99999999877  555554


Q ss_pred             eecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005          256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (432)
Q Consensus       256 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~  299 (432)
                      +       .....+|+.++..|++ +.++.|+.||+|..|++-.
T Consensus       259 v-------g~~D~WIWtV~~~PNs-Q~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  259 V-------GEQDSWIWTVQAKPNS-QYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             c-------cccceeEEEEEEccCC-ceEEEEEccCeeehhhhHH
Confidence            4       5677899999999999 9999999999999998753

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=6.7e-15  Score=129.22  Aligned_cols=303  Identities=11%  Similarity=0.105  Sum_probs=198.6

Q ss_pred             CccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        26 ~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      .++-.|.+.|..|.|+..|..|++|+.|..|.+||...++..                          ..-..||.    
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--------------------------l~f~SGH~----  185 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--------------------------LSFESGHC----  185 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc--------------------------cccccccc----
Confidence            344578999999999999999999999999999999886532                          12345687    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEcc-CcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                              ..|....|.|..+.+.+++++.||.|++=.+. ++.++....+..|.           +.+..++..|...+
T Consensus       186 --------~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~-----------g~vhklav~p~sp~  246 (559)
T KOG1334|consen  186 --------NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHE-----------GPVHKLAVEPDSPK  246 (559)
T ss_pred             --------cchhhhhccCCCCCcCceeccccCceeeeeeccccceecceeccccc-----------CccceeeecCCCCC
Confidence                    78888889877777889999999999987763 44555555555555           78888888887543


Q ss_pred             -eecceeeccceEEEEeecccccceeeEEeecCCCC---CeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCce-----e
Q 014005          185 -GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSDCE-TFVSA-DDLRINLWNLEISDQC-----F  253 (432)
Q Consensus       185 -~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~-----~  253 (432)
                       +.+++.  |+.+.-.|++..........- ..+..   ..++++.+|... .+++| .|..+++||.+.-...     +
T Consensus       247 ~f~S~ge--D~~v~~~Dlr~~~pa~~~~cr-~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~  323 (559)
T KOG1334|consen  247 PFLSCGE--DAVVFHIDLRQDVPAEKFVCR-EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVL  323 (559)
T ss_pred             ccccccc--ccceeeeeeccCCccceeeee-ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchh
Confidence             344444  888888888854222222211 23333   678899999765 67888 9999999998732211     1


Q ss_pred             eEeecCCCCc-CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc--c------ccc-ceeecccccccCCccce
Q 014005          254 NIVDMKPSNM-DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--C------DHS-ARILRDAAESHGSKSFF  323 (432)
Q Consensus       254 ~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~------~~~-~~~~~~h~~~~~~~~~~  323 (432)
                      ..+  .|..+ ....-.|++++|+.++ .-|+++-.|-.|+++.-.-+..  .      ... .+.+++|.+        
T Consensus       324 ~~f--~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN--------  392 (559)
T KOG1334|consen  324 DKF--CPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN--------  392 (559)
T ss_pred             hhc--CCccccccCcccceeEEecCCc-cceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccc--------
Confidence            222  11111 1223469999999888 4455566677899994332111  0      011 233666632        


Q ss_pred             eeeecceeEEEE-cCCCCEEEEeeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccc
Q 014005          324 TEIIASISDIKF-ANDGQHLLSRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLI  398 (432)
Q Consensus       324 ~~~~~~v~~~~~-s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  398 (432)
                         ...|..+-| -|...|+++|+| |.|.||+-   +.++.+.....           .+..+-...-.-.+++..-|.
T Consensus       393 ---~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-----------VVNCLEpHP~~PvLAsSGid~  458 (559)
T KOG1334|consen  393 ---SRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-----------VVNCLEPHPHLPVLASSGIDH  458 (559)
T ss_pred             ---ccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-----------eEeccCCCCCCchhhccCCcc
Confidence               234666655 578899999999 99999998   33333333221           111111111112367777899


Q ss_pred             eeeeecc
Q 014005          399 NLSALSA  405 (432)
Q Consensus       399 ~i~~~~~  405 (432)
                      .|+||..
T Consensus       459 DVKIWTP  465 (559)
T KOG1334|consen  459 DVKIWTP  465 (559)
T ss_pred             ceeeecC
Confidence            9999995

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=2.9e-14  Score=136.21  Aligned_cols=260  Identities=15%  Similarity=0.166  Sum_probs=169.3

Q ss_pred             CcEEEEEEcC--CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           33 DIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        33 ~~V~~~~fsp--~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      ..|+.+.+-.  |..+|++|+.||.||||+-......                      ..+.++.+.+-+   +.+...
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~----------------------~~eLVTaw~~Ls---~~~~~~ 1164 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK----------------------KPELVTAWSSLS---DQLPGA 1164 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccC----------------------CceeEEeecccc---ccCccC
Confidence            3688888754  3457899999999999984332100                      011222222111   000000


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCC-CCCcceecce
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP-PSFAHGYHLE  189 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~  189 (432)
                      .  +.=.-+.|  .....+|++++.-..|+|||.......  .......          +..++.+.-+ ..+..++.|.
T Consensus      1165 r--~~~~v~dW--qQ~~G~Ll~tGd~r~IRIWDa~~E~~~--~diP~~s----------~t~vTaLS~~~~~gn~i~AGf 1228 (1387)
T KOG1517|consen 1165 R--GTGLVVDW--QQQSGHLLVTGDVRSIRIWDAHKEQVV--ADIPYGS----------STLVTALSADLVHGNIIAAGF 1228 (1387)
T ss_pred             C--CCCeeeeh--hhhCCeEEecCCeeEEEEEecccceeE--eecccCC----------CccceeecccccCCceEEEee
Confidence            0  11144677  455556666666899999999876522  2222111          2345544433 2357777777


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCC--eeEEEeCCCCCE-EEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFN--INSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      .  ||.+++||.+.......+..+ ..|...  |..+.+.++|-- +++| .||.|++||++.. .....+     +...
T Consensus      1229 a--DGsvRvyD~R~a~~ds~v~~~-R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~~~-----~iv~ 1299 (1387)
T KOG1517|consen 1229 A--DGSVRVYDRRMAPPDSLVCVY-REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKETFL-----TIVA 1299 (1387)
T ss_pred             c--CCceEEeecccCCccccceee-cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-cccccc-----eeee
Confidence            7  999999999976555566666 678777  999999987654 8888 9999999999942 222222     1122


Q ss_pred             C---CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005          266 L---TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (432)
Q Consensus       266 ~---~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  342 (432)
                      |   .+..+++..|++. .++|+|+. +.|+||++...+     +..++.+      ..+.....+.+.+++|+|.-.+|
T Consensus      1300 ~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~-----l~~~k~n------~~F~~q~~gs~scL~FHP~~~ll 1366 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQ-----LNIIKYN------PGFMGQRIGSVSCLAFHPHRLLL 1366 (1387)
T ss_pred             ccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhh-----hcccccC------cccccCcCCCcceeeecchhHhh
Confidence            2   2358999999998 99999998 999999988544     3444432      11222235678999999999999


Q ss_pred             EEee-CCeEEEEec
Q 014005          343 LSRD-YMNLKVFRY  355 (432)
Q Consensus       343 ~s~~-~~~i~iwd~  355 (432)
                      |+|. |.+|.||..
T Consensus      1367 AaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1367 AAGSADSTVSIYSC 1380 (1387)
T ss_pred             hhccCCceEEEeec
Confidence            9984 499999977

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=7.5e-14  Score=131.22  Aligned_cols=251  Identities=15%  Similarity=0.141  Sum_probs=169.1

Q ss_pred             EEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhccee
Q 014005           38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  117 (432)
Q Consensus        38 ~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~  117 (432)
                      -.|++|+++++.... ..|.||...++..                           ++.+.+|.            .++.
T Consensus        22 avfSnD~k~l~~~~~-~~V~VyS~~Tg~~---------------------------i~~l~~~~------------a~l~   61 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCTG-NFVKVYSTATGEC---------------------------ITSLEDHT------------APLT   61 (792)
T ss_pred             cccccCCcEEEEeeC-CEEEEEecchHhh---------------------------hhhccccc------------Cccc
Confidence            469999998887655 4899999999874                           36788898            9999


Q ss_pred             EEEEEEcCCC-CEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccc------------------------
Q 014005          118 RVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN------------------------  172 (432)
Q Consensus       118 ~l~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  172 (432)
                      .+.+.|++.. .++++++.||.|++||...+.+.+....+.+..............                        
T Consensus        62 s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~  141 (792)
T KOG1963|consen   62 SVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQS  141 (792)
T ss_pred             eeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccce
Confidence            9999775554 578899999999999999887666555443322110000000000                        


Q ss_pred             ---------------------cccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC
Q 014005          173 ---------------------FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE  231 (432)
Q Consensus       173 ---------------------i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  231 (432)
                                           -..+.+++.+.+.....   +..+.+|+........+.+.....|...+++.+++|+++
T Consensus       142 ~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~---~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~  218 (792)
T KOG1963|consen  142 SRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH---MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER  218 (792)
T ss_pred             eeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE---eeeEEEEEecccceeeccchhhhhhcccceeEEeccccc
Confidence                                 00011111111111111   335566666532222222222245667789999999999


Q ss_pred             EEEEE-cCCeEEEEeCCC-CCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccccee
Q 014005          232 TFVSA-DDLRINLWNLEI-SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  309 (432)
Q Consensus       232 ~l~~~-~d~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  309 (432)
                      ++|+| .||+|.+|.--. .+...     ....+.-|...|+++.|+++| .+|++|+..|.+.+|.+.+++.     +.
T Consensus       219 ~~Aa~d~dGrI~vw~d~~~~~~~~-----t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k-----qf  287 (792)
T KOG1963|consen  219 YLAAGDSDGRILVWRDFGSSDDSE-----TCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK-----QF  287 (792)
T ss_pred             eEEEeccCCcEEEEeccccccccc-----cceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc-----cc
Confidence            99999 999999996541 11111     111237889999999999999 9999999999999999998773     22


Q ss_pred             ecccccccCCccceeeeecceeEEEEcCCCCEEEE-eeCCeEEEEec
Q 014005          310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKVFRY  355 (432)
Q Consensus       310 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~~~i~iwd~  355 (432)
                      +..             ..++|..+.+|||+.+.+. ..|+.|.+-..
T Consensus       288 LPR-------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  288 LPR-------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             ccc-------------cCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence            322             2579999999999987776 47788888776

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=7e-15  Score=127.07  Aligned_cols=198  Identities=14%  Similarity=0.129  Sum_probs=141.6

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceE
Q 014005          117 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  196 (432)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v  196 (432)
                      ..++|  +.+|..+++++.||++++|+.....  .......+.           ..|.++.|+|+++++++.+.  + ..
T Consensus       148 k~vaf--~~~gs~latgg~dg~lRv~~~Ps~~--t~l~e~~~~-----------~eV~DL~FS~dgk~lasig~--d-~~  209 (398)
T KOG0771|consen  148 KVVAF--NGDGSKLATGGTDGTLRVWEWPSML--TILEEIAHH-----------AEVKDLDFSPDGKFLASIGA--D-SA  209 (398)
T ss_pred             eEEEE--cCCCCEeeeccccceEEEEecCcch--hhhhhHhhc-----------CccccceeCCCCcEEEEecC--C-ce
Confidence            67888  8899999999999999999965443  222222222           78999999999999999887  6 99


Q ss_pred             EEEeecccccceeeEEee-cCCCCCeeEEEeCCCC---CE-EE-EE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          197 KIANVGNSVHARCQKVYP-HAHDFNINSISNNSDC---ET-FV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       197 ~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~---~~-l~-~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                      +||+.+   ++.++.... ...+.....+.|+.++   .+ ++ .. .-+.|+.||+...... ..+  +..+.......
T Consensus       210 ~VW~~~---~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l--~~~~~~~~~~s  283 (398)
T KOG0771|consen  210 RVWSVN---TGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFL--RLRKKIKRFKS  283 (398)
T ss_pred             EEEEec---cCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-ccc--chhhhhhccCc
Confidence            999999   555555442 2344556677888776   22 22 23 5667777776522221 111  01111233456


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-eeCC
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYM  348 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~~  348 (432)
                      |++++.+++| +++|.|+.||.|.|++..+-+..   ...-+.|             ...|+.+.|+||.+++++ +++.
T Consensus       284 iSsl~VS~dG-kf~AlGT~dGsVai~~~~~lq~~---~~vk~aH-------------~~~VT~ltF~Pdsr~~~svSs~~  346 (398)
T KOG0771|consen  284 ISSLAVSDDG-KFLALGTMDGSVAIYDAKSLQRL---QYVKEAH-------------LGFVTGLTFSPDSRYLASVSSDN  346 (398)
T ss_pred             ceeEEEcCCC-cEEEEeccCCcEEEEEeceeeee---Eeehhhh-------------eeeeeeEEEcCCcCcccccccCC
Confidence            9999999999 99999999999999999876642   2223344             789999999999999998 4558


Q ss_pred             eEEEEec
Q 014005          349 NLKVFRY  355 (432)
Q Consensus       349 ~i~iwd~  355 (432)
                      +..+..+
T Consensus       347 ~~~v~~l  353 (398)
T KOG0771|consen  347 EAAVTKL  353 (398)
T ss_pred             ceeEEEE
Confidence            8888888

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.63  E-value=5.6e-13  Score=125.72  Aligned_cols=236  Identities=23%  Similarity=0.351  Sum_probs=173.5

Q ss_pred             cEEEEEE-cCCCC-EEEEecc-cceEEEEEecC-CcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           34 IVSAIEF-DKTGD-YLAVGDR-GGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        34 ~V~~~~f-sp~g~-~l~t~~~-dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .+..+.+ ++++. +++..+. |+.+.+|+... ..                           ....+..|.        
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---------------------------~~~~~~~~~--------  155 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK---------------------------LIRTLEGHS--------  155 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe---------------------------EEEEEecCc--------
Confidence            6777777 88887 5555444 99999999987 32                           335788888        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeC-CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                          ..|..++|  +|++..+++++. |+.+++|++..+.....  +..+.           ..+.+++++|++..++.+
T Consensus       156 ----~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----------~~v~~~~~~~~~~~~~~~  216 (466)
T COG2319         156 ----ESVTSLAF--SPDGKLLASGSSLDGTIKLWDLRTGKPLST--LAGHT-----------DPVSSLAFSPDGGLLIAS  216 (466)
T ss_pred             ----ccEEEEEE--CCCCCEEEecCCCCCceEEEEcCCCceEEe--eccCC-----------CceEEEEEcCCcceEEEE
Confidence                88999999  889988888885 99999999987542222  22233           688999999888733333


Q ss_pred             -eeeccceEEEEeecccccceeeE-EeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          189 -EWTENMATKIANVGNSVHARCQK-VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       189 -~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                       ..  ++.+++||..   ...... .+ .+|.... ...|+|++..++++ .|+.+++|+.+........+       ..
T Consensus       217 ~~~--d~~i~~wd~~---~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------~~  282 (466)
T COG2319         217 GSS--DGTIRLWDLS---TGKLLRSTL-SGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-------SG  282 (466)
T ss_pred             ecC--CCcEEEEECC---CCcEEeeec-CCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-------ec
Confidence             44  8999999777   555555 45 6777765 44899999888888 99999999999443323332       56


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeec--ccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR--DAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  343 (432)
                      |...+.++.|+|++ ..+++++.|+.+.+||..+...    .....  .|             ...+..+.|.+++..++
T Consensus       283 ~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~~~-------------~~~~~~~~~~~~~~~~~  344 (466)
T COG2319         283 HSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKL----LSSLTLKGH-------------EGPVSSLSFSPDGSLLV  344 (466)
T ss_pred             CCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCce----EEEeeeccc-------------CCceEEEEECCCCCEEE
Confidence            78899999999987 7777798899999999887664    23332  44             45688999943435555


Q ss_pred             Ee--eCCeEEEEec
Q 014005          344 SR--DYMNLKVFRY  355 (432)
Q Consensus       344 s~--~~~~i~iwd~  355 (432)
                      .+  .++.+++|++
T Consensus       345 ~~~~~d~~~~~~~~  358 (466)
T COG2319         345 SGGSDDGTIRLWDL  358 (466)
T ss_pred             EeecCCCcEEeeec
Confidence            54  4489999999

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=9.3e-15  Score=130.61  Aligned_cols=215  Identities=13%  Similarity=0.159  Sum_probs=145.0

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      --.|.++|.|+++.++++.+.+|+.||+|+.|++....-.         .+.++        .......+.||+      
T Consensus       340 fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp---------~ds~d--------p~vl~~~l~Ght------  396 (577)
T KOG0642|consen  340 FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP---------DDSYD--------PSVLSGTLLGHT------  396 (577)
T ss_pred             EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc---------ccccC--------cchhccceeccc------
Confidence            3478999999999999999999999999999987522100         00000        112335789999      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC-ccee
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGY  186 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~  186 (432)
                            +.|+.+++  ++....|++++.||++++|+........+..-..+            +.-..+.+.... ...+
T Consensus       397 ------davw~l~~--s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~------------g~Plsvd~~ss~~a~~~  456 (577)
T KOG0642|consen  397 ------DAVWLLAL--SSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEH------------GYPLSVDRTSSRPAHSL  456 (577)
T ss_pred             ------cceeeeee--cccccceeeecCCceEEeeccCCcCccccCCcccc------------CCcceEeeccchhHhhh
Confidence                  99999999  77778899999999999999876553111111100            112222222211 1111


Q ss_pred             cceeeccceEEEEeecccccceeeEEeec------CCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecC
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYPH------AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK  259 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~  259 (432)
                      .     +.....+++........++.+..      .....++-+.++|++.+..++ .|+.|+++|.. .+..+..    
T Consensus       457 ~-----s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~-~~~~l~s----  526 (577)
T KOG0642|consen  457 A-----SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK-TGKILHS----  526 (577)
T ss_pred             h-----hcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc-ccccchh----
Confidence            1     22222233222213333333311      112457788999999999999 99999999998 5655543    


Q ss_pred             CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (432)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~  299 (432)
                         +..|...++++++.|+| .+|++++.||.+++|.+..
T Consensus       527 ---~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  527 ---MVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             ---eeeccceecceeecCCC-ceEEeecCCceeehhhccc
Confidence               37888999999999999 9999999999999999864

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.61  E-value=7.4e-14  Score=116.55  Aligned_cols=213  Identities=13%  Similarity=0.127  Sum_probs=165.9

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      ++|+|.+|  ++|...++++.....|.||.....+ .+....+..|.           ..+..+.|+|....+++++.  
T Consensus        11 ~pitchAw--n~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd-----------~~vtgvdWap~snrIvtcs~--   75 (361)
T KOG1523|consen   11 EPITCHAW--NSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD-----------KIVTGVDWAPKSNRIVTCSH--   75 (361)
T ss_pred             Cceeeeee--cCCCceEEeccCCceEEEEEecCCCCceeceehhhhC-----------cceeEEeecCCCCceeEccC--
Confidence            89999999  8999999999999999999998877 67777777777           88999999999999999999  


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (432)
                      |..-++|....+.+.++.-.+ ..+....+++.|+|.++.||+| ....|.+|-++..+.- ..   ....-..+.+.|+
T Consensus        76 drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW-WV---sKhikkPirStv~  150 (361)
T KOG1523|consen   76 DRNAYVWTQPSGGTWKPTLVL-LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW-WV---SKHIKKPIRSTVT  150 (361)
T ss_pred             CCCccccccCCCCeeccceeE-EEeccceeeEeecCcCceEEeccCccEEEEEEEecccce-eh---hhhhCCcccccee
Confidence            999999998655566666666 6788899999999999999999 8889999988832221 00   0011256677899


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccc--cCCc-------cceeeeecceeEEEEcCCCCEE
Q 014005          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES--HGSK-------SFFTEIIASISDIKFANDGQHL  342 (432)
Q Consensus       272 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~--~~~~-------~~~~~~~~~v~~~~~s~dg~~l  342 (432)
                      ++.|+|++ -+|++|+.|+..+++..--        +..+..+..  ...+       ..+....+++..+.|+|+|..|
T Consensus       151 sldWhpnn-VLlaaGs~D~k~rVfSayI--------K~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~l  221 (361)
T KOG1523|consen  151 SLDWHPNN-VLLAAGSTDGKCRVFSAYI--------KGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRL  221 (361)
T ss_pred             eeeccCCc-ceecccccCcceeEEEEee--------eccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEe
Confidence            99999998 9999999999999997542        222221111  1111       1122235799999999999999


Q ss_pred             EE-eeCCeEEEEec
Q 014005          343 LS-RDYMNLKVFRY  355 (432)
Q Consensus       343 ~s-~~~~~i~iwd~  355 (432)
                      +- +.|.++.+=|.
T Consensus       222 awv~Hds~v~~~da  235 (361)
T KOG1523|consen  222 AWVGHDSTVSFVDA  235 (361)
T ss_pred             eEecCCCceEEeec
Confidence            86 56688888888

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.58  E-value=1.7e-13  Score=121.91  Aligned_cols=162  Identities=9%  Similarity=0.132  Sum_probs=111.7

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccC--CCCCcceecceee
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN--PPSFAHGYHLEWT  191 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~  191 (432)
                      ..|+++.|.|. +...|+.+-.+|.+.++|.+-.-                       ......+  .+++..+..    
T Consensus       220 tsvT~ikWvpg-~~~~Fl~a~~sGnlyly~~~~~~-----------------------~~t~p~~~~~k~~~~f~i----  271 (636)
T KOG2394|consen  220 SSVTCIKWVPG-SDSLFLVAHASGNLYLYDKEIVC-----------------------GATAPSYQALKDGDQFAI----  271 (636)
T ss_pred             cceEEEEEEeC-CCceEEEEEecCceEEeeccccc-----------------------cCCCCcccccCCCCeeEE----
Confidence            78999999863 44567777889999999873211                       0000000  111111111    


Q ss_pred             ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                           ..|.-.  .+..++..+ .--.+.|+.++|+|||++||+. .||.++|||.. +...+-+       ++..-+..
T Consensus       272 -----~t~ksk--~~rNPv~~w-~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-t~eLlg~-------mkSYFGGL  335 (636)
T KOG2394|consen  272 -----LTSKSK--KTRNPVARW-HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFD-TQELLGV-------MKSYFGGL  335 (636)
T ss_pred             -----eeeecc--ccCCcccee-EeccccccceeEcCCCceEEEEecCceEEEeecc-HHHHHHH-------HHhhccce
Confidence                 111111  122333333 2234589999999999999998 99999999998 3333332       24555779


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC
Q 014005          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~  337 (432)
                      .|++|+||| +++++|++|..|.||.+..+++    +..=++|             ..+|+.++|.|
T Consensus       336 LCvcWSPDG-KyIvtGGEDDLVtVwSf~erRV----VARGqGH-------------kSWVs~VaFDp  384 (636)
T KOG2394|consen  336 LCVCWSPDG-KYIVTGGEDDLVTVWSFEERRV----VARGQGH-------------KSWVSVVAFDP  384 (636)
T ss_pred             EEEEEcCCc-cEEEecCCcceEEEEEeccceE----EEecccc-------------ccceeeEeecc
Confidence            999999999 9999999999999999998876    5666776             89999999998

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.57  E-value=1.9e-13  Score=113.00  Aligned_cols=155  Identities=12%  Similarity=0.132  Sum_probs=106.6

Q ss_pred             cccCCCCCcceecceeec--------cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE--E-cCCeEEE
Q 014005          175 NEHNPPSFAHGYHLEWTE--------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINL  243 (432)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~--------~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~-~d~~i~l  243 (432)
                      .+.|+++|.++..-....        -+...+|.++..  ......+.....+.|.+++|+|+|+.+++  | .++.+.+
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~--~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEK--NIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecC--CCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            466777777666554311        235666666432  12233332334557999999999998764  4 5789999


Q ss_pred             EeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeC---CCeEEEEEccccccccccceeecccccccCCc
Q 014005          244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSK  320 (432)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~  320 (432)
                      ||++  ...+..+         ....++.+.|+|+| ++|++|+.   .|.|.+||.++.+.    +..++.        
T Consensus        88 yd~~--~~~i~~~---------~~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~----i~~~~~--------  143 (194)
T PF08662_consen   88 YDVK--GKKIFSF---------GTQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKK----ISTFEH--------  143 (194)
T ss_pred             EcCc--ccEeEee---------cCCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEE----eecccc--------
Confidence            9998  4444433         23567899999999 99998874   46799999997654    344433        


Q ss_pred             cceeeeecceeEEEEcCCCCEEEEee-------CCeEEEEec--CcceeEe
Q 014005          321 SFFTEIIASISDIKFANDGQHLLSRD-------YMNLKVFRY--EPVMTLS  362 (432)
Q Consensus       321 ~~~~~~~~~v~~~~~s~dg~~l~s~~-------~~~i~iwd~--~~~~~~~  362 (432)
                             ..++.++|||||++|+++.       |+.++||+.  +.+....
T Consensus       144 -------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~  187 (194)
T PF08662_consen  144 -------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKP  187 (194)
T ss_pred             -------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence                   4578999999999999852       588899999  4444443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=5.7e-12  Score=101.49  Aligned_cols=217  Identities=15%  Similarity=0.249  Sum_probs=144.1

Q ss_pred             CCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCC
Q 014005           22 ERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE  101 (432)
Q Consensus        22 ~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~  101 (432)
                      +........|.++|+.++|.  ..+|++|+ ||.|+=|..+......                 ...|.++..-.+  |.
T Consensus        52 k~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~-----------------~~K~lwe~~~P~--~~  109 (325)
T KOG0649|consen   52 KLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESL-----------------ATKRLWEVKIPM--QV  109 (325)
T ss_pred             CcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhc-----------------cchhhhhhcCcc--cc
Confidence            33344456799999999998  45677765 4999999876543210                 000111111111  11


Q ss_pred             ccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC
Q 014005          102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (432)
Q Consensus       102 ~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  181 (432)
                         +   .+++ -.|+++..  .|..+.+++++.|+.++-||+++|+.+                               
T Consensus       110 ---~---~~ev-PeINam~l--dP~enSi~~AgGD~~~y~~dlE~G~i~-------------------------------  149 (325)
T KOG0649|consen  110 ---D---AVEV-PEINAMWL--DPSENSILFAGGDGVIYQVDLEDGRIQ-------------------------------  149 (325)
T ss_pred             ---C---cccC-CccceeEe--ccCCCcEEEecCCeEEEEEEecCCEEE-------------------------------
Confidence               0   0111 45788888  667777777879999999999987633                               


Q ss_pred             CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCC
Q 014005          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (432)
Q Consensus       182 ~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (432)
                                                   +++ .+|++.+.++.--.....+++| .||++++||.+ +.++.+.+..-.
T Consensus       150 -----------------------------r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k-t~k~v~~ie~yk  198 (325)
T KOG0649|consen  150 -----------------------------REY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK-TQKHVSMIEPYK  198 (325)
T ss_pred             -----------------------------EEE-cCCcceeeeeeecccCcceeecCCCccEEEEecc-ccceeEEecccc
Confidence                                         334 7999999999985555577788 99999999999 677777663311


Q ss_pred             --CCcCC-CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC
Q 014005          261 --SNMDD-LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (432)
Q Consensus       261 --~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~  337 (432)
                        ..+.. ...+|.+++-+.   ..|++|+ ...+.+|.+++.+.    ..+|.-              .+.+..+.|-.
T Consensus       199 ~~~~lRp~~g~wigala~~e---dWlvCGg-Gp~lslwhLrsse~----t~vfpi--------------pa~v~~v~F~~  256 (325)
T KOG0649|consen  199 NPNLLRPDWGKWIGALAVNE---DWLVCGG-GPKLSLWHLRSSES----TCVFPI--------------PARVHLVDFVD  256 (325)
T ss_pred             ChhhcCcccCceeEEEeccC---ceEEecC-CCceeEEeccCCCc----eEEEec--------------ccceeEeeeec
Confidence              12222 345677777653   5676555 55799999998765    466655              46788899875


Q ss_pred             CCCEEEEee-CCeEEEEec
Q 014005          338 DGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       338 dg~~l~s~~-~~~i~iwd~  355 (432)
                      |  .+++++ .+.+.-|.+
T Consensus       257 d--~vl~~G~g~~v~~~~l  273 (325)
T KOG0649|consen  257 D--CVLIGGEGNHVQSYTL  273 (325)
T ss_pred             c--eEEEeccccceeeeee
Confidence            5  555554 489999988

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=2.2e-12  Score=120.92  Aligned_cols=201  Identities=11%  Similarity=0.109  Sum_probs=130.8

Q ss_pred             cceeEEEEEEcCCCCEEEEEe---CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          114 EKINRVRWCAAPNGSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                      ..+...+|  +|||+.|+..+   .+..+.+|++.+++.+.+..+.              +......|+|++..++....
T Consensus       199 ~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~--------------~~~~~~~~SPDG~~La~~~~  262 (429)
T PRK03629        199 QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP--------------RHNGAPAFSPDGSKLAFALS  262 (429)
T ss_pred             CceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC--------------CCcCCeEECCCCCEEEEEEc
Confidence            67889999  89999988764   3457999999888755554332              23456789999998876432


Q ss_pred             e-ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEE--eCCCCCceeeEeecCCCCcCC
Q 014005          191 T-ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       191 ~-~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lw--d~~~~~~~~~~~~~~~~~~~~  265 (432)
                      . ....|.+||+.   .+...+..  .+...+....|+|+|+.++..  .++...+|  |+. ++.. ..+       ..
T Consensus       263 ~~g~~~I~~~d~~---tg~~~~lt--~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-~g~~-~~l-------t~  328 (429)
T PRK03629        263 KTGSLNLYVMDLA---SGQIRQVT--DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-GGAP-QRI-------TW  328 (429)
T ss_pred             CCCCcEEEEEECC---CCCEEEcc--CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-CCCe-EEe-------ec
Confidence            1 13368888887   44443332  344567889999999988766  34544555  555 3322 222       22


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCC---CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  342 (432)
                      .........|+|+| +.|+..+.+   ..|.+||+.+++.     ..+..              ........|+|||++|
T Consensus       329 ~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~-----~~Lt~--------------~~~~~~p~~SpDG~~i  388 (429)
T PRK03629        329 EGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV-----QVLTD--------------TFLDETPSIAPNGTMV  388 (429)
T ss_pred             CCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCCe-----EEeCC--------------CCCCCCceECCCCCEE
Confidence            23345678999999 777766543   3588899987763     44443              1223467899999999


Q ss_pred             EEe-eC---CeEEEEec--CcceeEeec
Q 014005          343 LSR-DY---MNLKVFRY--EPVMTLSFC  364 (432)
Q Consensus       343 ~s~-~~---~~i~iwd~--~~~~~~~~~  364 (432)
                      +.+ .+   ..+.++++  ...+.+..+
T Consensus       389 ~~~s~~~~~~~l~~~~~~G~~~~~l~~~  416 (429)
T PRK03629        389 IYSSSQGMGSVLNLVSTDGRFKARLPAT  416 (429)
T ss_pred             EEEEcCCCceEEEEEECCCCCeEECccC
Confidence            875 33   24677777  444555443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.56  E-value=1.4e-13  Score=111.81  Aligned_cols=249  Identities=11%  Similarity=0.090  Sum_probs=150.7

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCccee-eeee--------cC
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK-TEFQ--------SH  100 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~--------~h  100 (432)
                      .+...|+.+..-|+ ..|.+-++|..+.+|++..+..+......   ++..+..-.+.++..+.. +.+.        -|
T Consensus        54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~---~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h  129 (323)
T KOG0322|consen   54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIV---VNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETH  129 (323)
T ss_pred             hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeee---ccccccccceeccCCCcchhheecCCcccchhh
Confidence            46778999998887 45788899999999998774432111000   000010000001100000 0000        00


Q ss_pred             Ccc-----cccc---chhhhhcceeEEEEEEcCCCC--EEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccc
Q 014005          101 EPE-----FDYL---KSLEIEEKINRVRWCAAPNGS--MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (432)
Q Consensus       101 ~~~-----~~~~---~~~~~~~~v~~l~~~~s~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (432)
                      ..+     ...+   ......+.+.+..|- ..++.  +++.|-.+|++.+||+.++.  ++..+.....+++ ......
T Consensus       130 ~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~-~~c~s~~lllaGyEsghvv~wd~S~~~--~~~~~~~~~kv~~-~~ash~  205 (323)
T KOG0322|consen  130 KQDGGDTTQVQIADDSERSKLGSVMCQDKD-HACGSTFLLLAGYESGHVVIWDLSTGD--KIIQLPQSSKVES-PNASHK  205 (323)
T ss_pred             hhccCccceeEccCchhccccCceeeeecc-ccccceEEEEEeccCCeEEEEEccCCc--eeecccccccccc-chhhcc
Confidence            000     0000   011112566666652 23333  35566789999999998863  1111111100000 011123


Q ss_pred             cccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCC
Q 014005          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  249 (432)
Q Consensus       171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~  249 (432)
                      .++.++.+.+....-+.|+.  +..+..|.++.....-.++.+..-....+..+.+-||++.+|++ .|+.|++|..+ +
T Consensus       206 qpvlsldyas~~~rGisgga--~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr-t  282 (323)
T KOG0322|consen  206 QPVLSLDYASSCDRGISGGA--DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR-T  282 (323)
T ss_pred             CcceeeeechhhcCCcCCCc--cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEec-c
Confidence            67888888877666666666  77888888875421112222212234468889999999999999 99999999999 6


Q ss_pred             CceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005          250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (432)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~  297 (432)
                      ...+.++       .-|.+.|++++|+|+. .++|+++.|++|.+|++
T Consensus       283 l~pLAVL-------kyHsagvn~vAfspd~-~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  283 LNPLAVL-------KYHSAGVNAVAFSPDC-ELMAAASKDARISLWKL  322 (323)
T ss_pred             CCchhhh-------hhhhcceeEEEeCCCC-chhhhccCCceEEeeec
Confidence            7777766       8899999999999997 99999999999999986

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.56  E-value=2.6e-14  Score=133.25  Aligned_cols=206  Identities=10%  Similarity=0.132  Sum_probs=148.5

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      ..|+|..|  ...|.++++|+.|..++||..++..  .+....+|.           +.|+.++.+....+++.++.  |
T Consensus       191 naVyca~f--Drtg~~Iitgsdd~lvKiwS~et~~--~lAs~rGhs-----------~ditdlavs~~n~~iaaaS~--D  253 (1113)
T KOG0644|consen  191 NAVYCAIF--DRTGRYIITGSDDRLVKIWSMETAR--CLASCRGHS-----------GDITDLAVSSNNTMIAAASN--D  253 (1113)
T ss_pred             hheeeeee--ccccceEeecCccceeeeeeccchh--hhccCCCCc-----------cccchhccchhhhhhhhccc--C
Confidence            88999999  8999999999999999999988776  455566666           89999999999999999998  9


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEE
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  273 (432)
                      ..|++|.+.   .+.++..+ .+|++.|++++|+|-.   .++.||++++||.+..  . .++..+|..+.+. .-+.++
T Consensus       254 ~vIrvWrl~---~~~pvsvL-rghtgavtaiafsP~~---sss~dgt~~~wd~r~~--~-~~y~prp~~~~~~-~~~~s~  322 (1113)
T KOG0644|consen  254 KVIRVWRLP---DGAPVSVL-RGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLE--P-RIYVPRPLKFTEK-DLVDSI  322 (1113)
T ss_pred             ceEEEEecC---CCchHHHH-hccccceeeeccCccc---cCCCCCceEecccccc--c-cccCCCCCCcccc-cceeee
Confidence            999999999   77888888 8999999999999965   3449999999999811  1 1111111111110 112222


Q ss_pred             EEcCCC------------------------------------CcEEEEEeCCCeEEEEEccccccccccceeeccccccc
Q 014005          274 EFHPIY------------------------------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH  317 (432)
Q Consensus       274 ~~~p~~------------------------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~  317 (432)
                      .|...+                                    ..+.+++-.+-.+.+|++-+|.+    ...+.+|    
T Consensus       323 ~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l----~H~l~gh----  394 (1113)
T KOG0644|consen  323 LFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL----LHNLMGH----  394 (1113)
T ss_pred             eccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchh----hhhhccc----
Confidence            222221                                    12333333445567777777765    4666665    


Q ss_pred             CCccceeeeecceeEEEEcCCCCEEE-E-eeCCeEEEEec---CcceeEeec
Q 014005          318 GSKSFFTEIIASISDIKFANDGQHLL-S-RDYMNLKVFRY---EPVMTLSFC  364 (432)
Q Consensus       318 ~~~~~~~~~~~~v~~~~~s~dg~~l~-s-~~~~~i~iwd~---~~~~~~~~~  364 (432)
                               ...+..+.++|-+..++ + |-||...|||+   .+++.+...
T Consensus       395 ---------sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g  437 (1113)
T KOG0644|consen  395 ---------SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG  437 (1113)
T ss_pred             ---------ccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc
Confidence                     78899999999776665 3 45599999999   677766643

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.2e-12  Score=122.80  Aligned_cols=184  Identities=15%  Similarity=0.130  Sum_probs=121.2

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCC---CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec-ce
Q 014005          114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH-LE  189 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~  189 (432)
                      ..+.+.+|  +|||+.|+..+.+   ..|.+||+.+++...+....              +......|+|++..++. ..
T Consensus       196 ~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~--------------g~~~~~~~SPDG~~la~~~~  259 (427)
T PRK02889        196 EPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK--------------GSNSAPAWSPDGRTLAVALS  259 (427)
T ss_pred             CCcccceE--cCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC--------------CCccceEECCCCCEEEEEEc
Confidence            77889999  8999999887643   46999999988765543332              34557899999988764 34


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      .  ++...+|.++.. .+. .+.+ ..+........|+|||+.++..  .++...+|.++..+...+.+       ....
T Consensus       260 ~--~g~~~Iy~~d~~-~~~-~~~l-t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-------t~~g  327 (427)
T PRK02889        260 R--DGNSQIYTVNAD-GSG-LRRL-TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-------TFTG  327 (427)
T ss_pred             c--CCCceEEEEECC-CCC-cEEC-CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-------ecCC
Confidence            4  566666665422 222 3333 3444556678999999988855  45666777654222222222       1111


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCC---eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      .......|+|+| +.|+..+.++   .|.+||+.+++.     +.+..              ........|+|||++|+.
T Consensus       328 ~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~-----~~lt~--------------~~~~~~p~~spdg~~l~~  387 (427)
T PRK02889        328 SYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQV-----TALTD--------------TTRDESPSFAPNGRYILY  387 (427)
T ss_pred             CCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCCe-----EEccC--------------CCCccCceECCCCCEEEE
Confidence            223467899999 8888776554   699999987764     34433              123467899999999887


Q ss_pred             e
Q 014005          345 R  345 (432)
Q Consensus       345 ~  345 (432)
                      .
T Consensus       388 ~  388 (427)
T PRK02889        388 A  388 (427)
T ss_pred             E
Confidence            5

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.55  E-value=4e-12  Score=108.39  Aligned_cols=160  Identities=16%  Similarity=0.152  Sum_probs=122.6

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecC-CCCccccccccccccccccccCCCCCcceecceeec
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      ..|.++.+    +.++|+++-.+ .|.|||++.-++....... .++           ..+.+++++..+.+++--+...
T Consensus        88 t~IL~Vrm----Nr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~-----------~gl~AlS~n~~n~ylAyp~s~t  151 (391)
T KOG2110|consen   88 TSILAVRM----NRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNP-----------KGLCALSPNNANCYLAYPGSTT  151 (391)
T ss_pred             CceEEEEE----ccceEEEEEcc-cEEEEecccceeehhhhccCCCc-----------cceEeeccCCCCceEEecCCCC
Confidence            67888888    34567777554 4999999887643322221 222           4455666666667777666556


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe-EEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                      .|.|.+||..   +.++...+ ..|.+.+.+++|+++|.++|++ +.|+ ||++.+. .++.+..++  .   ......|
T Consensus       152 ~GdV~l~d~~---nl~~v~~I-~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~-~G~kl~eFR--R---G~~~~~I  221 (391)
T KOG2110|consen  152 SGDVVLFDTI---NLQPVNTI-NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP-EGQKLYEFR--R---GTYPVSI  221 (391)
T ss_pred             CceEEEEEcc---cceeeeEE-EecCCceeEEEECCCCCEEEEeccCceEEEEEEcC-CccEeeeee--C---CceeeEE
Confidence            8999999998   77888888 7999999999999999999999 6665 7999998 777777661  1   1224568


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEcccc
Q 014005          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  300 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~  300 (432)
                      .+++|+|++ ++|++.+..++|.+|.+...
T Consensus       222 ySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  222 YSLSFSPDS-QFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             EEEEECCCC-CeEEEecCCCeEEEEEeccc
Confidence            999999999 99999999999999998753

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=2.4e-12  Score=121.22  Aligned_cols=192  Identities=13%  Similarity=0.061  Sum_probs=126.5

Q ss_pred             cceeEEEEEEcCCCCEEEEEeC---CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc-e
Q 014005          114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL-E  189 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~  189 (432)
                      ..+.+.+|  +|||+.|+..+.   +..|.+||+.+++...+....              +......|+|++..++.. .
T Consensus       204 ~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~--------------g~~~~~~~SpDG~~l~~~~s  267 (433)
T PRK04922        204 EPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR--------------GINGAPSFSPDGRRLALTLS  267 (433)
T ss_pred             CccccccC--CCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC--------------CCccCceECCCCCEEEEEEe
Confidence            67889999  899999988764   346999999888755543332              334568999999877644 3


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCe--EEEEeCCCCCceeeEeecCCCCcCC
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~--i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      ...+..+.+||+.   .+...+ + ..+.......+|+|+|+.++.+  .++.  |+++|+. +++... +       ..
T Consensus       268 ~~g~~~Iy~~d~~---~g~~~~-l-t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-~g~~~~-l-------t~  333 (433)
T PRK04922        268 RDGNPEIYVMDLG---SRQLTR-L-TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-GGSAER-L-------TF  333 (433)
T ss_pred             CCCCceEEEEECC---CCCeEE-C-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCeEE-e-------ec
Confidence            3113478888887   333333 3 3444455678999999988866  4454  6666665 333222 2       11


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCC---eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  342 (432)
                      +.......+|+|+| +.|+..+.++   .|.+||+.+++.     +.+..              ........|+|||++|
T Consensus       334 ~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~-----~~Lt~--------------~~~~~~p~~spdG~~i  393 (433)
T PRK04922        334 QGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSV-----RTLTP--------------GSLDESPSFAPNGSMV  393 (433)
T ss_pred             CCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCe-----EECCC--------------CCCCCCceECCCCCEE
Confidence            22334568999999 7777665433   699999987764     34433              1234567899999988


Q ss_pred             EEe-eC---CeEEEEec
Q 014005          343 LSR-DY---MNLKVFRY  355 (432)
Q Consensus       343 ~s~-~~---~~i~iwd~  355 (432)
                      +.. .+   ..|.++++
T Consensus       394 ~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        394 LYATREGGRGVLAAVST  410 (433)
T ss_pred             EEEEecCCceEEEEEEC
Confidence            764 22   46777777

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=2e-12  Score=110.95  Aligned_cols=251  Identities=13%  Similarity=0.109  Sum_probs=172.2

Q ss_pred             ccCCCcEEEEEEcCCCC--EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           29 LQDVDIVSAIEFDKTGD--YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~--~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      +...+.|+.+.|.-+++  .|...+.|..+..+.++......                     +...........     
T Consensus        52 ~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s---------------------~~~~~~~~~l~~-----  105 (412)
T KOG3881|consen   52 VDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISS---------------------SLDDAKTVSLGT-----  105 (412)
T ss_pred             cchhhhhhhheeecCCceeEeeccccCcccccccccCCcccc---------------------cccccccccccc-----
Confidence            34456788888876554  45555566677777766654320                     000111222233     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                             ++|-.++.   .|+ .|++|-.+|.+.+|..+.+.  ...+..+..+            .++..+.-++....
T Consensus       106 -------~~I~gl~~---~dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g------------~g~~~~r~~~~~p~  162 (412)
T KOG3881|consen  106 -------KSIKGLKL---ADG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG------------PGLYDVRQTDTDPY  162 (412)
T ss_pred             -------ccccchhh---cCC-EEEEEecCCcEEEEeccCCccccccceeeecC------------CceeeeccCCCCCc
Confidence                   66777776   345 78888889999999998554  1222222222            34555555665555


Q ss_pred             eec-ceeeccceEEEEeecccccceeeEEeecC--------CCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCCCCCce
Q 014005          185 GYH-LEWTENMATKIANVGNSVHARCQKVYPHA--------HDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQC  252 (432)
Q Consensus       185 ~~~-~~~~~~~~v~i~d~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~--~~~l~~~-~d~~i~lwd~~~~~~~  252 (432)
                      ++. |+...-..+++||++.   .+.+..-+.-        -.-+++++.|-+.  ...|+++ .-+.+++||.+...++
T Consensus       163 Iva~GGke~~n~lkiwdle~---~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP  239 (412)
T KOG3881|consen  163 IVATGGKENINELKIWDLEQ---SKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP  239 (412)
T ss_pred             eEecCchhcccceeeeeccc---ceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc
Confidence            544 6662227899999983   3222211000        1235778889887  8889999 9999999999977777


Q ss_pred             eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeE
Q 014005          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (432)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  332 (432)
                      +..+       .-...+++++...|++ +.+++|..-|.+..||+++++..   ...+.+             ..++|.+
T Consensus       240 V~~f-------d~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~---g~~~kg-------------~tGsirs  295 (412)
T KOG3881|consen  240 VAQF-------DFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKLL---GCGLKG-------------ITGSIRS  295 (412)
T ss_pred             eeEe-------ccccCcceeeeecCCC-cEEEEecccchhheecccCceee---ccccCC-------------ccCCcce
Confidence            7766       5556789999999999 99999999999999999998863   233555             3689999


Q ss_pred             EEEcCCCCEEEEe-eCCeEEEEec
Q 014005          333 IKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       333 ~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                      +..+|.+++||++ =|..+||+|+
T Consensus       296 ih~hp~~~~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  296 IHCHPTHPVLASCGLDRYVRIHDI  319 (412)
T ss_pred             EEEcCCCceEEeeccceeEEEeec
Confidence            9999999999996 4599999999

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=2.9e-12  Score=120.15  Aligned_cols=219  Identities=12%  Similarity=0.131  Sum_probs=140.5

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecc---cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      .+...+.+.+|||||+.|+..+.   +..|.+|++.+++..                         .+..+.        
T Consensus       196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-------------------------~l~~~~--------  242 (429)
T PRK03629        196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-------------------------QVASFP--------  242 (429)
T ss_pred             cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------------------EccCCC--------
Confidence            44567999999999999987542   357899998776421                         112222        


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEE-eCCC--eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILS-TNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  183 (432)
                             ..+....|  +|||+.|+.. +.+|  .|.+||+.+++...+...   .           ..+....|+|+++
T Consensus       243 -------~~~~~~~~--SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~---~-----------~~~~~~~wSPDG~  299 (429)
T PRK03629        243 -------RHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG---R-----------SNNTEPTWFPDSQ  299 (429)
T ss_pred             -------CCcCCeEE--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC---C-----------CCcCceEECCCCC
Confidence                   33446789  8999988765 4444  588999988876544322   1           3466789999999


Q ss_pred             ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cC--CeEEEEeCCCCCceeeEeecC
Q 014005          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD--LRINLWNLEISDQCFNIVDMK  259 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d--~~i~lwd~~~~~~~~~~~~~~  259 (432)
                      .++..+.. ++...+|.++.. .+...+ + ...........|+|+|+.++..  .+  ..|.+||++ ++.. ..+   
T Consensus       300 ~I~f~s~~-~g~~~Iy~~d~~-~g~~~~-l-t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~-~g~~-~~L---  370 (429)
T PRK03629        300 NLAYTSDQ-AGRPQVYKVNIN-GGAPQR-I-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA-TGGV-QVL---  370 (429)
T ss_pred             EEEEEeCC-CCCceEEEEECC-CCCeEE-e-ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC-CCCe-EEe---
Confidence            88765531 334455543321 222222 2 2233455678999999998865  33  358888988 4432 322   


Q ss_pred             CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCe---EEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc
Q 014005          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF---VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (432)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s  336 (432)
                          ... .......|+||| +.|+.++.++.   +.++++. |+.    .+.+..|             .+.+...+|+
T Consensus       371 ----t~~-~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~-G~~----~~~l~~~-------------~~~~~~p~Ws  426 (429)
T PRK03629        371 ----TDT-FLDETPSIAPNG-TMVIYSSSQGMGSVLNLVSTD-GRF----KARLPAT-------------DGQVKFPAWS  426 (429)
T ss_pred             ----CCC-CCCCCceECCCC-CEEEEEEcCCCceEEEEEECC-CCC----eEECccC-------------CCCcCCcccC
Confidence                111 123467899999 88888887764   6777775 333    3556665             5678888888


Q ss_pred             C
Q 014005          337 N  337 (432)
Q Consensus       337 ~  337 (432)
                      |
T Consensus       427 p  427 (429)
T PRK03629        427 P  427 (429)
T ss_pred             C
Confidence            7

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=7.6e-12  Score=118.03  Aligned_cols=192  Identities=11%  Similarity=0.053  Sum_probs=127.5

Q ss_pred             cceeEEEEEEcCCCCEEEEEeC---CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc-e
Q 014005          114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL-E  189 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~  189 (432)
                      ..+...+|  +|||+.|+..+.   +..|.+||+.+++...+....              +.+....|+|++..++.. .
T Consensus       202 ~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~--------------g~~~~~~~SPDG~~la~~~~  265 (435)
T PRK05137        202 SLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFP--------------GMTFAPRFSPDGRKVVMSLS  265 (435)
T ss_pred             CCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC--------------CcccCcEECCCCCEEEEEEe
Confidence            78999999  899999888753   468999999988765543332              456678999999877643 3


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      ......|.++|+.   .+...+ + ..+........|+|||+.++..  .++  .|+++|+. ++.... +       ..
T Consensus       266 ~~g~~~Iy~~d~~---~~~~~~-L-t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~-g~~~~~-l-------t~  331 (435)
T PRK05137        266 QGGNTDIYTMDLR---SGTTTR-L-TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD-GSNPRR-I-------SF  331 (435)
T ss_pred             cCCCceEEEEECC---CCceEE-c-cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC-CCCeEE-e-------ec
Confidence            3113356677776   333333 3 3455566779999999988866  333  67788877 333322 2       22


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCC---CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  342 (432)
                      ....+....|+|+| +.|+..+.+   ..|.+||+.++..     +.+..              ...+..+.|+|||++|
T Consensus       332 ~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~-----~~lt~--------------~~~~~~p~~spDG~~i  391 (435)
T PRK05137        332 GGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGE-----RILTS--------------GFLVEGPTWAPNGRVI  391 (435)
T ss_pred             CCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCCCce-----EeccC--------------CCCCCCCeECCCCCEE
Confidence            23446678899999 777776543   3688888765432     33333              2346678999999988


Q ss_pred             EEe-eC-C-----eEEEEec
Q 014005          343 LSR-DY-M-----NLKVFRY  355 (432)
Q Consensus       343 ~s~-~~-~-----~i~iwd~  355 (432)
                      +.. .+ +     .++++|+
T Consensus       392 ~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        392 MFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             EEEEccCCCCCcceEEEEEC
Confidence            763 22 2     4666676

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=1.6e-12  Score=110.41  Aligned_cols=204  Identities=15%  Similarity=0.204  Sum_probs=141.5

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      -+.-++|++.-..+|++..|-.|++|+-....                            ...++.-.           .
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~ksst~----------------------------pt~Lks~s-----------Q  140 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC----------------------------PTKLKSVS-----------Q  140 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCCCC----------------------------Cceecchh-----------h
Confidence            47788999866668899999999999976632                            12333321           1


Q ss_pred             cceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          114 EKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       114 ~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                      ..|.+++|  .|. +..|+.|+..| |.+|...... ......+.                                   
T Consensus       141 rnvtclaw--RPlsaselavgCr~g-IciW~~s~tln~~r~~~~~-----------------------------------  182 (445)
T KOG2139|consen  141 RNVTCLAW--RPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMM-----------------------------------  182 (445)
T ss_pred             cceeEEEe--ccCCcceeeeeecce-eEEEEcCcccccccccccc-----------------------------------
Confidence            67999999  554 34677887755 9999876432 11100000                                   


Q ss_pred             ccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          192 ENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                                    ...+.+.+. .+| ..|++++|++||..++++  .|..|.+||.+ .+..+...       ....+
T Consensus       183 --------------s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd-tg~~~pL~-------~~glg  239 (445)
T KOG2139|consen  183 --------------STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPD-TGQKIPLI-------PKGLG  239 (445)
T ss_pred             --------------cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCC-CCCccccc-------ccCCC
Confidence                          111111221 344 689999999999999987  79999999999 56655432       23345


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCC
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM  348 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~  348 (432)
                      .++-+.||||+ .+|+++.-|+..++|+......+   .+-..+              .+.|...+|+|+|++|.-...+
T Consensus       240 g~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~---erw~lg--------------sgrvqtacWspcGsfLLf~~sg  301 (445)
T KOG2139|consen  240 GFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTK---ERWILG--------------SGRVQTACWSPCGSFLLFACSG  301 (445)
T ss_pred             ceeeEEEcCCC-CEEEEecccceeeeehhccccee---cceecc--------------CCceeeeeecCCCCEEEEEEcC
Confidence            68899999999 89999999999999965543322   122233              4689999999999988876557


Q ss_pred             eEEEEec
Q 014005          349 NLKVFRY  355 (432)
Q Consensus       349 ~i~iwd~  355 (432)
                      .-++|.+
T Consensus       302 sp~lysl  308 (445)
T KOG2139|consen  302 SPRLYSL  308 (445)
T ss_pred             CceEEEE
Confidence            7777777

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.52  E-value=2.3e-12  Score=125.33  Aligned_cols=230  Identities=13%  Similarity=0.193  Sum_probs=146.5

Q ss_pred             ccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccc
Q 014005           87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT  166 (432)
Q Consensus        87 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  166 (432)
                      |+|....+..+.-|.            ..|..++.+ ++++.+|++|+.||+|++|+...-....       .       
T Consensus      1034 W~p~G~lVAhL~Ehs------------~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~-------~------- 1086 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHS------------SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEG-------G------- 1086 (1431)
T ss_pred             CCccceEeehhhhcc------------ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCc-------c-------
Confidence            455666777777777            788888885 4566999999999999999986432100       0       


Q ss_pred             cccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEe
Q 014005          167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN  245 (432)
Q Consensus       167 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd  245 (432)
                                                             ..++..++ ......+.++...+.+..+|++ .||.|++.+
T Consensus      1087 ---------------------------------------s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1087 ---------------------------------------SARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred             ---------------------------------------eeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEE
Confidence                                                   22333333 3345688899999999999999 999999999


Q ss_pred             CCCCCce-eeEeecCCCCcCCCCcceEEEEEcCCCC-cEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005          246 LEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (432)
Q Consensus       246 ~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~  323 (432)
                      ++..... .................+..-+|..... ..++++..-+.|..||+++....    ..++..          
T Consensus      1127 id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~----w~lk~~---------- 1192 (1431)
T KOG1240|consen 1127 IDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA----WRLKNQ---------- 1192 (1431)
T ss_pred             ccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH----HhhhcC----------
Confidence            9842211 1111111111222233344445543332 37888999999999999976642    222210          


Q ss_pred             eeeecceeEEEEcCCCCEEEEeeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeec-ccc
Q 014005          324 TEIIASISDIKFANDGQHLLSRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTL-YLI  398 (432)
Q Consensus       324 ~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~  398 (432)
                       ...+.|++++.+|.+.+++.|+. |.+-+||+   .++.....+.. .++.    +.-+|..+...+ ..+.+|+ ..+
T Consensus      1193 -~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~----~v~~~~~~~~~S-~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1193 -LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIR----HVWLCPTYPQES-VSVSAGSSSNN 1265 (1431)
T ss_pred             -ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcc----eEEeeccCCCCc-eEEEecccCCC
Confidence             01389999999999999999966 99999999   45555444321 1111    112333333222 2355555 678


Q ss_pred             eeeeec
Q 014005          399 NLSALS  404 (432)
Q Consensus       399 ~i~~~~  404 (432)
                      .+.+|+
T Consensus      1266 evs~wn 1271 (1431)
T KOG1240|consen 1266 EVSTWN 1271 (1431)
T ss_pred             ceeeee
Confidence            899999

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.51  E-value=2.7e-13  Score=120.63  Aligned_cols=185  Identities=14%  Similarity=0.123  Sum_probs=137.1

Q ss_pred             CccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        26 ~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ...-.|.+.|.|-.|+|+|.-|++++.||.|++|.......                            .++....    
T Consensus        98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR----------------------------Stl~Q~~----  145 (737)
T KOG1524|consen   98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR----------------------------STVVQNE----  145 (737)
T ss_pred             hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHH----------------------------HHHhhcC----
Confidence            33446888999999999999999999999999999765421                            1222333    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (432)
                              .+|.|++|  .|+.+.++.+.. +++.+=-+....  ++.....|.           +-|.++.|++....+
T Consensus       146 --------~~v~c~~W--~p~S~~vl~c~g-~h~~IKpL~~n~--k~i~WkAHD-----------GiiL~~~W~~~s~lI  201 (737)
T KOG1524|consen  146 --------ESIRCARW--APNSNSIVFCQG-GHISIKPLAANS--KIIRWRAHD-----------GLVLSLSWSTQSNII  201 (737)
T ss_pred             --------ceeEEEEE--CCCCCceEEecC-CeEEEeeccccc--ceeEEeccC-----------cEEEEeecCccccce
Confidence                    78999999  777776666643 455554444332  333444455           889999999999999


Q ss_pred             ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      ++|+.  |-..++||..    ++.+..- ..|..+|++++|+|+ ..++.++-+++++   +                ..
T Consensus       202 ~sgGE--D~kfKvWD~~----G~~Lf~S-~~~ey~ITSva~npd-~~~~v~S~nt~R~---~----------------~p  254 (737)
T KOG1524|consen  202 ASGGE--DFRFKIWDAQ----GANLFTS-AAEEYAITSVAFNPE-KDYLLWSYNTARF---S----------------SP  254 (737)
T ss_pred             eecCC--ceeEEeeccc----CcccccC-Chhccceeeeeeccc-cceeeeeeeeeee---c----------------CC
Confidence            99999  9999999985    3343333 678999999999999 5666664444441   1                34


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEE
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRL  294 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  294 (432)
                      ..+.|..++||+|| ..+++|...|.+.+
T Consensus       255 ~~GSifnlsWS~DG-TQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  255 RVGSIFNLSWSADG-TQATCGTSTGQLIV  282 (737)
T ss_pred             CccceEEEEEcCCC-ceeeccccCceEEE
Confidence            45679999999999 99999998887644

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=6.7e-12  Score=118.40  Aligned_cols=201  Identities=9%  Similarity=0.084  Sum_probs=131.9

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecc---cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.                            ..+..+.    
T Consensus       198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~----------------------------~~l~~~~----  245 (435)
T PRK05137        198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR----------------------------ELVGNFP----  245 (435)
T ss_pred             ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE----------------------------EEeecCC----
Confidence            356778999999999999988753   46899999987642                            2333344    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEE-EEeCCCe--EEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  182 (432)
                              +.+...+|  +|||+.|+ +.+.++.  |.+||+.++....+...   .           .......|+|++
T Consensus       246 --------g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~---~-----------~~~~~~~~spDG  301 (435)
T PRK05137        246 --------GMTFAPRF--SPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDS---P-----------AIDTSPSYSPDG  301 (435)
T ss_pred             --------CcccCcEE--CCCCCEEEEEEecCCCceEEEEECCCCceEEccCC---C-----------CccCceeEcCCC
Confidence                    56678899  89998876 4455554  77778888775544322   1           345568999999


Q ss_pred             cceecceeec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-C--CeEEEEeCCCCCceeeEee
Q 014005          183 AHGYHLEWTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-D--LRINLWNLEISDQCFNIVD  257 (432)
Q Consensus       183 ~~~~~~~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d--~~i~lwd~~~~~~~~~~~~  257 (432)
                      ..++..+... ...+.++|+.   .+...+..  .+...+....|+|+|+.++.. . .  ..|.+||+. ++. .+.+ 
T Consensus       302 ~~i~f~s~~~g~~~Iy~~d~~---g~~~~~lt--~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~-~~~-~~~l-  373 (435)
T PRK05137        302 SQIVFESDRSGSPQLYVMNAD---GSNPRRIS--FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD-GSG-ERIL-  373 (435)
T ss_pred             CEEEEEECCCCCCeEEEEECC---CCCeEEee--cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECC-CCc-eEec-
Confidence            9887655311 2367777765   33333322  234556778999999999865 3 3  367888876 332 2322 


Q ss_pred             cCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC------CeEEEEEccccc
Q 014005          258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR------GFVRLVDMRQSA  301 (432)
Q Consensus       258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~iwd~~~~~  301 (432)
                            . ....+....|+||| +.|+..+.+      ..+.++|+..+.
T Consensus       374 ------t-~~~~~~~p~~spDG-~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        374 ------T-SGFLVEGPTWAPNG-RVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             ------c-CCCCCCCCeECCCC-CEEEEEEccCCCCCcceEEEEECCCCc
Confidence                  1 11236678999999 777665432      257788876544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.49  E-value=2.6e-13  Score=118.69  Aligned_cols=190  Identities=9%  Similarity=0.059  Sum_probs=152.8

Q ss_pred             ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  194 (432)
                      .-+.+.|  +.+|++|+.|+..|+|..+|..++++..-....              ..|.++.|-.+..+++.+.   ..
T Consensus       131 GPY~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~--------------Etv~Dv~~LHneq~~AVAQ---K~  191 (545)
T KOG1272|consen  131 GPYHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM--------------ETVRDVTFLHNEQFFAVAQ---KK  191 (545)
T ss_pred             CCeeeee--cCCccEEEecCCccceeeeecccceeeeeeehh--------------hhhhhhhhhcchHHHHhhh---hc
Confidence            3567888  899999999999999999999998855433332              6788999988888888876   57


Q ss_pred             eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEE
Q 014005          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (432)
Q Consensus       195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  273 (432)
                      .+.|||-... .-.|++     ....+..+.|-|..-+|+++ ..|.++--|+. .++.+..+       ..-.+.+..+
T Consensus       192 y~yvYD~~Gt-ElHClk-----~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS-~GklVa~~-------~t~~G~~~vm  257 (545)
T KOG1272|consen  192 YVYVYDNNGT-ELHCLK-----RHIRVARLEFLPYHFLLVAASEAGFLKYQDVS-TGKLVASI-------RTGAGRTDVM  257 (545)
T ss_pred             eEEEecCCCc-EEeehh-----hcCchhhhcccchhheeeecccCCceEEEeec-hhhhhHHH-------HccCCccchh
Confidence            8889987532 223333     23578899999998788888 89999999999 66665544       4556678889


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-eeCCeEEE
Q 014005          274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKV  352 (432)
Q Consensus       274 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~~~i~i  352 (432)
                      +-+|-+ .++-+|...|+|.+|...+.+.    +..+-.|             .++|.++++.++|+|+|| |-|..++|
T Consensus       258 ~qNP~N-aVih~GhsnGtVSlWSP~skeP----LvKiLcH-------------~g~V~siAv~~~G~YMaTtG~Dr~~kI  319 (545)
T KOG1272|consen  258 KQNPYN-AVIHLGHSNGTVSLWSPNSKEP----LVKILCH-------------RGPVSSIAVDRGGRYMATTGLDRKVKI  319 (545)
T ss_pred             hcCCcc-ceEEEcCCCceEEecCCCCcch----HHHHHhc-------------CCCcceEEECCCCcEEeecccccceeE
Confidence            999998 8999999999999999887665    4555565             799999999999999998 56699999


Q ss_pred             Eec
Q 014005          353 FRY  355 (432)
Q Consensus       353 wd~  355 (432)
                      ||+
T Consensus       320 WDl  322 (545)
T KOG1272|consen  320 WDL  322 (545)
T ss_pred             eee
Confidence            999

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=1.2e-12  Score=110.37  Aligned_cols=257  Identities=11%  Similarity=0.101  Sum_probs=161.1

Q ss_pred             CCCcEEEEEEcC--CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           31 DVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        31 h~~~V~~~~fsp--~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ++..++.+.|..  ....+.+|+.||+||+||++.....                         ....+.+|.       
T Consensus        69 ~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-------------------------a~~~~~~~~-------  116 (376)
T KOG1188|consen   69 PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-------------------------ARISWTQQS-------  116 (376)
T ss_pred             CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-------------------------hheeccCCC-------
Confidence            455677788866  4567899999999999999886543                         112334443       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEe----CCCeEEEEEccCcceeeeee-cCCCCccccccccccccccccccCCCCC-
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILST----NDKTIKLWKVRDQKVKKIKE-MDHFPFVSSENTLLAEKNFMNEHNPPSF-  182 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  182 (432)
                          ..+..+++-  +-+++.+++|.    .+-.|.+||++..+.. +.. ...|.           ..|+.+.|+|+. 
T Consensus       117 ----~~~f~~ld~--nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~~~~eSH~-----------DDVT~lrFHP~~p  178 (376)
T KOG1188|consen  117 ----GTPFICLDL--NCKKNIIACGTELTRSDASVVLWDVRSEQQL-LRQLNESHN-----------DDVTQLRFHPSDP  178 (376)
T ss_pred             ----CCcceEeec--cCcCCeEEeccccccCceEEEEEEeccccch-hhhhhhhcc-----------CcceeEEecCCCC
Confidence                134556665  44677777774    4678999999876521 111 12233           789999999974 


Q ss_pred             cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC--CEEEEEcCCeEEEEeCCCCCceeeEeecCC
Q 014005          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSADDLRINLWNLEISDQCFNIVDMKP  260 (432)
Q Consensus       183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~  260 (432)
                      ..+++|+.  ||.+.++|+........+... -.+...|.++.|..++  +........+..+|+++ .+.+...++...
T Consensus       179 nlLlSGSv--DGLvnlfD~~~d~EeDaL~~v-iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele-~~~~~~~~~~~~  254 (376)
T KOG1188|consen  179 NLLLSGSV--DGLVNLFDTKKDNEEDALLHV-INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE-DGSEETWLENPD  254 (376)
T ss_pred             CeEEeecc--cceEEeeecCCCcchhhHHHh-hcccceeeeeeeecCCcceEEEEEccCceeEEEcc-CCChhhcccCcc
Confidence            57788888  999999999865333333332 3567789999999887  54444489999999998 343322111000


Q ss_pred             CCc-----CCCCcceEEEEEcCCCCcEEEEEeC-CCeEEEEEcc---ccccccccceeecccccccCCccceeeeeccee
Q 014005          261 SNM-----DDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR---QSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (432)
Q Consensus       261 ~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~  331 (432)
                      ...     ......+-. +.+|.+...++.++. -|...++-+.   ++. ..+....+++|            |..-|.
T Consensus       255 ~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~-~~~~~a~l~g~------------~~eiVR  320 (376)
T KOG1188|consen  255 VSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS-LLTEPAILQGG------------HEEIVR  320 (376)
T ss_pred             chhhhHHhhhhhhheee-cccCCCcceEEEeccccCceeEEEeeeccccc-ccCccccccCC------------cHHHHH
Confidence            000     000111111 123433355555554 4555555443   222 22334566663            367788


Q ss_pred             EEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          332 DIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       332 ~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      ++.|...+.++.||+. |.+.+|..
T Consensus       321 ~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  321 DILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             HHhhhcccceeeccCCCceEEEEec
Confidence            8999888889999754 99999985

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=5.4e-12  Score=118.87  Aligned_cols=218  Identities=12%  Similarity=0.119  Sum_probs=137.6

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEeccc---ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ..+...+.+.+|+|+|+.|+..+.+   ..|.+||+.+++..                            .+....    
T Consensus       200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~----------------------------~l~~~~----  247 (433)
T PRK04922        200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE----------------------------LVASFR----  247 (433)
T ss_pred             ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE----------------------------EeccCC----
Confidence            3456689999999999999887643   46999999776421                            222222    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEE-EeCCC--eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  182 (432)
                              ......+|  +|||+.++. .+.+|  .|.+||+.+++...+...   .           .......|+|++
T Consensus       248 --------g~~~~~~~--SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~---~-----------~~~~~~~~spDG  303 (433)
T PRK04922        248 --------GINGAPSF--SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNH---F-----------GIDTEPTWAPDG  303 (433)
T ss_pred             --------CCccCceE--CCCCCEEEEEEeCCCCceEEEEECCCCCeEECccC---C-----------CCccceEECCCC
Confidence                    34457889  899987764 45555  699999988875544322   1           234567899999


Q ss_pred             cceecceeeccc--eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-CC--eEEEEeCCCCCceeeEe
Q 014005          183 AHGYHLEWTENM--ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DL--RINLWNLEISDQCFNIV  256 (432)
Q Consensus       183 ~~~~~~~~~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~--~i~lwd~~~~~~~~~~~  256 (432)
                      ..++..+.. ++  .+.++++.   .+...+..  .+.......+|+|+|+.++.. . ++  .|.+||+. ++... .+
T Consensus       304 ~~l~f~sd~-~g~~~iy~~dl~---~g~~~~lt--~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~-~g~~~-~L  375 (433)
T PRK04922        304 KSIYFTSDR-GGRPQIYRVAAS---GGSAERLT--FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS-TGSVR-TL  375 (433)
T ss_pred             CEEEEEECC-CCCceEEEEECC---CCCeEEee--cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC-CCCeE-EC
Confidence            988766531 33  35555554   23332222  223345578999999999865 3 32  68999997 44432 22


Q ss_pred             ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC---CeEEEEEccccccccccceeecccccccCCccceeeeecceeEE
Q 014005          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  333 (432)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~  333 (432)
                             . +........|+|+| +.++..+.+   +.+.++++..+.     .+.+..+             .+.+...
T Consensus       376 -------t-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g~~-----~~~l~~~-------------~g~~~~p  428 (433)
T PRK04922        376 -------T-PGSLDESPSFAPNG-SMVLYATREGGRGVLAAVSTDGRV-----RQRLVSA-------------DGEVREP  428 (433)
T ss_pred             -------C-CCCCCCCceECCCC-CEEEEEEecCCceEEEEEECCCCc-----eEEcccC-------------CCCCCCC
Confidence                   1 11234467899999 776666543   357788875433     2444432             3456677


Q ss_pred             EEcC
Q 014005          334 KFAN  337 (432)
Q Consensus       334 ~~s~  337 (432)
                      +|+|
T Consensus       429 ~wsp  432 (433)
T PRK04922        429 AWSP  432 (433)
T ss_pred             ccCC
Confidence            7876

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=8.8e-13  Score=116.12  Aligned_cols=266  Identities=13%  Similarity=0.126  Sum_probs=168.9

Q ss_pred             eeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccc
Q 014005           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (432)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  173 (432)
                      ...+..|.            +.|+.+.|  +..|..+++|+.|..|.+||...++.+. ....+|.           ..|
T Consensus       135 ~~kL~~H~------------GcVntV~F--N~~Gd~l~SgSDD~~vv~WdW~~~~~~l-~f~SGH~-----------~Nv  188 (559)
T KOG1334|consen  135 QKKLNKHK------------GCVNTVHF--NQRGDVLASGSDDLQVVVWDWVSGSPKL-SFESGHC-----------NNV  188 (559)
T ss_pred             hhcccCCC------------Cccceeee--cccCceeeccCccceEEeehhhccCccc-ccccccc-----------cch
Confidence            34566777            99999999  8899999999999999999998776322 1222333           455


Q ss_pred             ccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCE-EEEE-cCCeEEEEeCCCCCc
Q 014005          174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQ  251 (432)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~-~d~~i~lwd~~~~~~  251 (432)
                      ....|-|........+...||++++-.+.........+.+ ..|.+.|..++.-|+..+ |.++ .|+.+.-+|++ .+.
T Consensus       189 fQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl-~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr-~~~  266 (559)
T KOG1334|consen  189 FQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL-APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR-QDV  266 (559)
T ss_pred             hhhhccCCCCCcCceeccccCceeeeeeccccceecceec-ccccCccceeeecCCCCCcccccccccceeeeeec-cCC
Confidence            5555666543333333333899998876643222222333 679999999999998665 4455 99999999998 444


Q ss_pred             eeeEeecCCCCcCCCCc---ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccc--cccceeecccccccCCccceeee
Q 014005          252 CFNIVDMKPSNMDDLTE---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC--DHSARILRDAAESHGSKSFFTEI  326 (432)
Q Consensus       252 ~~~~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~h~~~~~~~~~~~~~  326 (432)
                      ....+..    ...+..   ....++.+|.+.+.+++++.|..+++||.+.-...  ...+..|..|..       ....
T Consensus       267 pa~~~~c----r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl-------~~d~  335 (559)
T KOG1334|consen  267 PAEKFVC----READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL-------VEDD  335 (559)
T ss_pred             ccceeee----eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc-------cccC
Confidence            4333311    122222   56789999998779999999999999998853321  001233332210       0011


Q ss_pred             ecceeEEEEcCC-CCEEEEeeCCeEEEEec------Cc---------cee-EeecceeeeehhhhhcccccccccceeeE
Q 014005          327 IASISDIKFAND-GQHLLSRDYMNLKVFRY------EP---------VMT-LSFCGIYVWILRQLQHSRFMSIYALSCVI  389 (432)
Q Consensus       327 ~~~v~~~~~s~d-g~~l~s~~~~~i~iwd~------~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (432)
                      .-.|++++++.+ +.+|++-.|-.|+++.-      .+         ++. |+.|...       .+.+-. -|+....-
T Consensus       336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-------~TVKgV-NFfGPrsE  407 (559)
T KOG1334|consen  336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-------RTVKGV-NFFGPRSE  407 (559)
T ss_pred             cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccc-------ccccee-eeccCccc
Confidence            357999999976 56677767788999966      11         111 3333320       000111 12222333


Q ss_pred             EEEeecccceeeeeccC
Q 014005          390 YIITTLYLINLSALSAG  406 (432)
Q Consensus       390 ~~~~g~~~~~i~~~~~~  406 (432)
                      ||++||..|.|.+|+..
T Consensus       408 yVvSGSDCGhIFiW~K~  424 (559)
T KOG1334|consen  408 YVVSGSDCGHIFIWDKK  424 (559)
T ss_pred             eEEecCccceEEEEecc
Confidence            79999999999999954

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=2.5e-11  Score=103.32  Aligned_cols=261  Identities=11%  Similarity=0.092  Sum_probs=162.8

Q ss_pred             CCcEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           32 VDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        32 ~~~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      ...|+|++|-|.+ +-|+.|+.. -|.||..+.......   .++-...+.          ..+....||          
T Consensus       140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r---~~~~~s~~~----------~qvl~~pgh----------  195 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANR---NIRMMSTHH----------LQVLQDPGH----------  195 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccc---ccccccccc----------hhheeCCCC----------
Confidence            4479999999965 567777764 699998765332100   000000000          001122233          


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeC-CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                         ..|++++|  .+||..+++++. |..|.|||..++....+....  .           +.+.-+.|+|++.++...+
T Consensus       196 ---~pVtsmqw--n~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g--l-----------gg~slLkwSPdgd~lfaAt  257 (445)
T KOG2139|consen  196 ---NPVTSMQW--NEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG--L-----------GGFSLLKWSPDGDVLFAAT  257 (445)
T ss_pred             ---ceeeEEEE--cCCCCEEeecccCcceEEEEcCCCCCcccccccC--C-----------CceeeEEEcCCCCEEEEec
Confidence               57999999  899999999864 678999999998865554222  1           6788899999999999999


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceee------------Eee
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFN------------IVD  257 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~------------~~~  257 (432)
                      .  |+..++|+...  ...+.+-.  ...+.|...+|+|.|++|+.+-.+.-++|.+...+++..            +.+
T Consensus       258 ~--davfrlw~e~q--~wt~erw~--lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaD  331 (445)
T KOG2139|consen  258 C--DAVFRLWQENQ--SWTKERWI--LGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD  331 (445)
T ss_pred             c--cceeeeehhcc--cceeccee--ccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeecc
Confidence            8  99999997653  23333332  234489999999999999877445555565542222211            111


Q ss_pred             cCCCCcCC----CCcceEEEEEcCCCCcEEEEEeCCC--------eEEEEEccccccccccceeecccccccCCccceee
Q 014005          258 MKPSNMDD----LTEVITSAEFHPIYCNLLAYSSSRG--------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (432)
Q Consensus       258 ~~~~~~~~----~~~~v~~~~~~p~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  325 (432)
                      +...+...    -.+.+.+++|+|.| .+||+.-..+        .|.+||.+.....   ...+.+- .          
T Consensus       332 L~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~sp~v---els~cg~-i----------  396 (445)
T KOG2139|consen  332 LQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKSPPV---ELSYCGM-I----------  396 (445)
T ss_pred             chhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcccccCce---EEEeccc-c----------
Confidence            11111111    24678899999999 8998866444        3677887754321   0111110 0          


Q ss_pred             eecceeEEEEcC---CCCEEEEe-eCCeEEEEec
Q 014005          326 IIASISDIKFAN---DGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       326 ~~~~v~~~~~s~---dg~~l~s~-~~~~i~iwd~  355 (432)
                      .......++|+|   +|++|..+ +.|.+.-|++
T Consensus       397 ~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  397 GGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             cCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence            012244566666   57777777 5588888887

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=1.6e-11  Score=115.28  Aligned_cols=221  Identities=14%  Similarity=0.151  Sum_probs=136.0

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEeccc---ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ..+.+.+.+.+|+|+|+.|+..+.+   ..|.+||+.+++..                            .+....    
T Consensus       192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~----------------------------~l~~~~----  239 (427)
T PRK02889        192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR----------------------------VVANFK----  239 (427)
T ss_pred             ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE----------------------------EeecCC----
Confidence            4567789999999999999877643   35999999876521                            222222    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEE-EeCCCeEEEEEc--cCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s-~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  182 (432)
                              ..+...+|  +|||+.++. .+.++...+|.+  .++....+..   +.           +......|+|++
T Consensus       240 --------g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~---~~-----------~~~~~~~wSpDG  295 (427)
T PRK02889        240 --------GSNSAPAW--SPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ---SS-----------GIDTEPFFSPDG  295 (427)
T ss_pred             --------CCccceEE--CCCCCEEEEEEccCCCceEEEEECCCCCcEECCC---CC-----------CCCcCeEEcCCC
Confidence                    44567899  899998864 567777666654  4444333322   11           334567899999


Q ss_pred             cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC---eEEEEeCCCCCceeeEeec
Q 014005          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL---RINLWNLEISDQCFNIVDM  258 (432)
Q Consensus       183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~---~i~lwd~~~~~~~~~~~~~  258 (432)
                      ..++..+. .++...+|.+... .+...+..  .........+|+|+|++++.. .++   .|.+||+. ++... .+  
T Consensus       296 ~~l~f~s~-~~g~~~Iy~~~~~-~g~~~~lt--~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~-~g~~~-~l--  367 (427)
T PRK02889        296 RSIYFTSD-RGGAPQIYRMPAS-GGAAQRVT--FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLA-TGQVT-AL--  367 (427)
T ss_pred             CEEEEEec-CCCCcEEEEEECC-CCceEEEe--cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECC-CCCeE-Ec--
Confidence            98876542 1455667765422 22222222  122334467899999999866 433   69999998 44432 22  


Q ss_pred             CCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC---eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEE
Q 014005          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (432)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~  335 (432)
                           .. ........|+|++ +.|+.++.++   .+.+.++. +..    .+.+..+             .+.+...+|
T Consensus       368 -----t~-~~~~~~p~~spdg-~~l~~~~~~~g~~~l~~~~~~-g~~----~~~l~~~-------------~g~~~~p~w  422 (427)
T PRK02889        368 -----TD-TTRDESPSFAPNG-RYILYATQQGGRSVLAAVSSD-GRI----KQRLSVQ-------------GGDVREPSW  422 (427)
T ss_pred             -----cC-CCCccCceECCCC-CEEEEEEecCCCEEEEEEECC-CCc----eEEeecC-------------CCCCCCCcc
Confidence                 11 1224578999999 7777666443   35555653 433    3444432             356677788


Q ss_pred             cCC
Q 014005          336 AND  338 (432)
Q Consensus       336 s~d  338 (432)
                      +|-
T Consensus       423 sp~  425 (427)
T PRK02889        423 GPF  425 (427)
T ss_pred             CCC
Confidence            873

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.45  E-value=2e-12  Score=115.32  Aligned_cols=176  Identities=16%  Similarity=0.260  Sum_probs=103.2

Q ss_pred             hhhhhhhcCCCCCccccCCCcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcc
Q 014005           14 WKCSQAFGERNPDEELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR   92 (432)
Q Consensus        14 w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~   92 (432)
                      .+++..|.    ...+..+..|+|+.|-|.++ .++++-.+|.+.++|.+..-..+  ..+...++.         |..-
T Consensus       205 ~~~sklfn----e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t--~p~~~~~k~---------~~~f  269 (636)
T KOG2394|consen  205 FEVSKLFN----EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGAT--APSYQALKD---------GDQF  269 (636)
T ss_pred             hHHHHhhh----hcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCC--CCcccccCC---------CCee
Confidence            45555555    22344568999999998654 44556678999999873211100  000000000         0000


Q ss_pred             eeeeeecCCcccccc--chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccc
Q 014005           93 YKTEFQSHEPEFDYL--KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (432)
Q Consensus        93 ~~~~~~~h~~~~~~~--~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (432)
                      .+.+.+.+... ..+  |.+. +..|+..+|  +|||++||+.+.||.++|+|..+.++.                    
T Consensus       270 ~i~t~ksk~~r-NPv~~w~~~-~g~in~f~F--S~DG~~LA~VSqDGfLRvF~fdt~eLl--------------------  325 (636)
T KOG2394|consen  270 AILTSKSKKTR-NPVARWHIG-EGSINEFAF--SPDGKYLATVSQDGFLRIFDFDTQELL--------------------  325 (636)
T ss_pred             EEeeeeccccC-CccceeEec-cccccceeE--cCCCceEEEEecCceEEEeeccHHHHH--------------------
Confidence            00000111000 000  0000 145666666  667777777777777777776654421                    


Q ss_pred             cccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCC
Q 014005          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  249 (432)
Q Consensus       171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~  249 (432)
                                                              ..+ +.--+...|++|+|||+++++| .|.-|.+|.+. .
T Consensus       326 ----------------------------------------g~m-kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~-e  363 (636)
T KOG2394|consen  326 ----------------------------------------GVM-KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE-E  363 (636)
T ss_pred             ----------------------------------------HHH-HhhccceEEEEEcCCccEEEecCCcceEEEEEec-c
Confidence                                                    111 3345678999999999999999 99999999998 5


Q ss_pred             CceeeEeecCCCCcCCCCcceEEEEEcC
Q 014005          250 DQCFNIVDMKPSNMDDLTEVITSAEFHP  277 (432)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p  277 (432)
                      .+.+..-       ++|.++|+.++|+|
T Consensus       364 rRVVARG-------qGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  364 RRVVARG-------QGHKSWVSVVAFDP  384 (636)
T ss_pred             ceEEEec-------cccccceeeEeecc
Confidence            5555433       89999999999983

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.44  E-value=1.4e-11  Score=105.91  Aligned_cols=203  Identities=12%  Similarity=0.121  Sum_probs=142.9

Q ss_pred             CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEc
Q 014005           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  124 (432)
Q Consensus        45 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s  124 (432)
                      ..|++|-.+|.+.+|..+.+...                       ......+..+             ..+..+.=+ .
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~h-----------------------ss~l~~la~g-------------~g~~~~r~~-~  158 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLH-----------------------SSKLIKLATG-------------PGLYDVRQT-D  158 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCccc-----------------------cccceeeecC-------------CceeeeccC-C
Confidence            35778888999999998854321                       0011222222             234445442 1


Q ss_pred             CCCCEEEEEeCC--CeEEEEEccCcceeeeeec-CCCCccccccccccccccccccCCCC--CcceecceeeccceEEEE
Q 014005          125 PNGSMFILSTND--KTIKLWKVRDQKVKKIKEM-DHFPFVSSENTLLAEKNFMNEHNPPS--FAHGYHLEWTENMATKIA  199 (432)
Q Consensus       125 ~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~v~i~  199 (432)
                      .+...+++|+..  +.+++||++..+  ++..- +...+-   ....-.-.+.++.|-+.  ...+++++.  -+.+++|
T Consensus       159 ~~p~Iva~GGke~~n~lkiwdle~~~--qiw~aKNvpnD~---L~LrVPvW~tdi~Fl~g~~~~~fat~T~--~hqvR~Y  231 (412)
T KOG3881|consen  159 TDPYIVATGGKENINELKIWDLEQSK--QIWSAKNVPNDR---LGLRVPVWITDIRFLEGSPNYKFATITR--YHQVRLY  231 (412)
T ss_pred             CCCceEecCchhcccceeeeecccce--eeeeccCCCCcc---ccceeeeeeccceecCCCCCceEEEEec--ceeEEEe
Confidence            233456778888  889999998773  22221 111100   00001134566777776  677777777  8999999


Q ss_pred             eecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCC
Q 014005          200 NVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  278 (432)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  278 (432)
                      |.+.  ..+++..+ .-....|+++...|.++++.+| .-+.+..||++ .+.....      .+.+..+.|+++..+|.
T Consensus       232 Dt~~--qRRPV~~f-d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r-~~kl~g~------~~kg~tGsirsih~hp~  301 (412)
T KOG3881|consen  232 DTRH--QRRPVAQF-DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR-GGKLLGC------GLKGITGSIRSIHCHPT  301 (412)
T ss_pred             cCcc--cCcceeEe-ccccCcceeeeecCCCcEEEEecccchhheeccc-Cceeecc------ccCCccCCcceEEEcCC
Confidence            9984  56677777 6668899999999999999999 99999999999 4444332      23788899999999999


Q ss_pred             CCcEEEEEeCCCeEEEEEcccccc
Q 014005          279 YCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       279 ~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      + +++|+++-|..+||+|+.+.++
T Consensus       302 ~-~~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  302 H-PVLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             C-ceEEeeccceeEEEeecccchh
Confidence            9 9999999999999999998665

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.43  E-value=9.7e-10  Score=100.30  Aligned_cols=269  Identities=10%  Similarity=0.097  Sum_probs=161.0

Q ss_pred             CCcEEEEEEcCCCCEEEEecc----cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           32 VDIVSAIEFDKTGDYLAVGDR----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      .....-++++|++++|.++..    ++.|..|++.....                       ....+.......      
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-----------------------~L~~~~~~~~~g------   86 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-----------------------TLTLLNSVPSGG------   86 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-----------------------EEEEEEEEEESS------
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-----------------------eeEEeeeeccCC------
Confidence            334566889999999887765    57899999887410                       011222222111      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEe-CCCeEEEEEccC-cceeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (432)
                            .....+++  ++++++++++. .+|.|.++++.. +.+........+.................+.++|+++++
T Consensus        87 ------~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v  158 (345)
T PF10282_consen   87 ------SSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV  158 (345)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred             ------CCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence                  34456788  89999999986 489999999976 443332111100000000000011334578899999988


Q ss_pred             ecceeeccceEEEEeecccc-cceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeE---eecC
Q 014005          186 YHLEWTENMATKIANVGNSV-HARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNI---VDMK  259 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~---~~~~  259 (432)
                      +.... ....|.+|++.... .-.....+........+.++|+|+++++.+.  .++.|.++++......+..   +...
T Consensus       159 ~v~dl-G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~  237 (345)
T PF10282_consen  159 YVPDL-GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL  237 (345)
T ss_dssp             EEEET-TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred             EEEec-CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence            77654 24588999987432 1222233334566788999999999988765  6999999998832222222   2122


Q ss_pred             CCCcCCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEcc--ccccccccceeecccccccCCccceeeeecceeEEEEc
Q 014005          260 PSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (432)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s  336 (432)
                      +....+ ......++++||+ ++|.++. ..+.|.+|++.  ++++.  .+..+...             ......++++
T Consensus       238 ~~~~~~-~~~~~~i~ispdg-~~lyvsnr~~~sI~vf~~d~~~g~l~--~~~~~~~~-------------G~~Pr~~~~s  300 (345)
T PF10282_consen  238 PEGFTG-ENAPAEIAISPDG-RFLYVSNRGSNSISVFDLDPATGTLT--LVQTVPTG-------------GKFPRHFAFS  300 (345)
T ss_dssp             ETTSCS-SSSEEEEEE-TTS-SEEEEEECTTTEEEEEEECTTTTTEE--EEEEEEES-------------SSSEEEEEE-
T ss_pred             cccccc-cCCceeEEEecCC-CEEEEEeccCCEEEEEEEecCCCceE--EEEEEeCC-------------CCCccEEEEe
Confidence            221111 2267899999999 6665554 67789999994  33321  12222210             2347899999


Q ss_pred             CCCCEEEEee-C-CeEEEEec
Q 014005          337 NDGQHLLSRD-Y-MNLKVFRY  355 (432)
Q Consensus       337 ~dg~~l~s~~-~-~~i~iwd~  355 (432)
                      |+|++|+++. + +.|.+|++
T Consensus       301 ~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  301 PDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEEecCCCeEEEEEE
Confidence            9999999863 3 89999988

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=8e-13  Score=118.03  Aligned_cols=180  Identities=15%  Similarity=0.203  Sum_probs=128.9

Q ss_pred             eeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccc
Q 014005           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (432)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  174 (432)
                      +.+.||+            +.|++++|  +.+|.+|++|+.|-.+.|||....++.                        
T Consensus        44 ~eL~GH~------------GCVN~LeW--n~dG~lL~SGSDD~r~ivWd~~~~Kll------------------------   85 (758)
T KOG1310|consen   44 AELTGHT------------GCVNCLEW--NADGELLASGSDDTRLIVWDPFEYKLL------------------------   85 (758)
T ss_pred             hhhcccc------------ceecceee--cCCCCEEeecCCcceEEeecchhccee------------------------
Confidence            5788999            99999999  899999999999999999998754422                        


Q ss_pred             cccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCCCCCc
Q 014005          175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQ  251 (432)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~-~d~~i~lwd~~~~~~  251 (432)
                                                          ..+..+|...|.++.|-|  +.+++++| .|..|+++|+.....
T Consensus        86 ------------------------------------hsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~  129 (758)
T KOG1310|consen   86 ------------------------------------HSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKE  129 (758)
T ss_pred             ------------------------------------eeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccc
Confidence                                                111268999999999998  46678888 999999999983211


Q ss_pred             eee--EeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecc
Q 014005          252 CFN--IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (432)
Q Consensus       252 ~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~  329 (432)
                      .-.  -......-...|...|..++-.|++++.+-++++||+|+-+|+|....|..   ....|.    ....+...--.
T Consensus       130 ~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p---~~~~~~----~l~ny~~~lie  202 (758)
T KOG1310|consen  130 GGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP---DEDCPS----ILVNYNPQLIE  202 (758)
T ss_pred             cccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc---cccccH----HHHHhchhhhe
Confidence            100  000011133678899999999999999999999999999999997544421   000000    00000001235


Q ss_pred             eeEEEEcCCC-CEEEEe-eCCeEEEEec
Q 014005          330 ISDIKFANDG-QHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       330 v~~~~~s~dg-~~l~s~-~~~~i~iwd~  355 (432)
                      ..++..+|.. .|||.| ++-..++||.
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhhh
Confidence            6789999975 567776 5689999996

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.42  E-value=1.4e-09  Score=93.34  Aligned_cols=255  Identities=11%  Similarity=0.078  Sum_probs=159.7

Q ss_pred             cceeEEEEEEcCCCCEEEEEeC---CCeEEEEEccC--cceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                      ...+-|+|  +++++.|.++-.   +|.|..|.+..  |.+..+.......           .+-.-++.++++.++.++
T Consensus        40 ~nptyl~~--~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g-----------~~p~yvsvd~~g~~vf~A  106 (346)
T COG2706          40 GNPTYLAV--NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG-----------SPPCYVSVDEDGRFVFVA  106 (346)
T ss_pred             CCCceEEE--CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC-----------CCCeEEEECCCCCEEEEE
Confidence            67788999  889988888743   57888888764  5555443322222           334678899999999888


Q ss_pred             eeeccceEEEEeecccccc-eeeEEeecCCCCC----------eeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeE
Q 014005          189 EWTENMATKIANVGNSVHA-RCQKVYPHAHDFN----------INSISNNSDCETFVSA--DDLRINLWNLEISDQCFNI  255 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~-~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~  255 (432)
                      ... .|.|.++.++....- ..+..+  .|.+.          +....+.|+++++++.  .-..|.+|++. .+.....
T Consensus       107 nY~-~g~v~v~p~~~dG~l~~~v~~~--~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~-dg~L~~~  182 (346)
T COG2706         107 NYH-SGSVSVYPLQADGSLQPVVQVV--KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD-DGKLTPA  182 (346)
T ss_pred             Ecc-CceEEEEEcccCCccccceeee--ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc-cCccccc
Confidence            763 478889888653222 222332  34444          8889999999999987  57789999998 4432211


Q ss_pred             eecCCCCcCCCCcceEEEEEcCCCCcEEEEE-eCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEE
Q 014005          256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  334 (432)
Q Consensus       256 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~  334 (432)
                         .+..+ ......+.|.|+|++ ++..+. --+++|.+|......-.   ...++.+...|..   |.+ ..+..++.
T Consensus       183 ---~~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~---~~~lQ~i~tlP~d---F~g-~~~~aaIh  250 (346)
T COG2706         183 ---DPAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGK---FEELQTIDTLPED---FTG-TNWAAAIH  250 (346)
T ss_pred             ---ccccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCce---EEEeeeeccCccc---cCC-CCceeEEE
Confidence               11111 334567899999999 665544 47899999998863111   2333332111110   111 46788999


Q ss_pred             EcCCCCEEEEeeC--CeEEEEec----CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          335 FANDGQHLLSRDY--MNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       335 ~s~dg~~l~s~~~--~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      .++||++|.+++-  ..|-+|.+    ..+..+......--.+|.+       .+..+.-++++.+....+|.+|.
T Consensus       251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F-------~i~~~g~~Liaa~q~sd~i~vf~  319 (346)
T COG2706         251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDF-------NINPSGRFLIAANQKSDNITVFE  319 (346)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccc-------eeCCCCCEEEEEccCCCcEEEEE
Confidence            9999999998643  78999988    2222222211100000000       11223445688888888999998

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.41  E-value=6.8e-11  Score=107.03  Aligned_cols=132  Identities=14%  Similarity=0.173  Sum_probs=105.7

Q ss_pred             cceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          193 NMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                      .|.|.+|+..   .++....+. ..|.+.++++.++.+-..+.++ .|+.+..|+.. ....+.++       ......+
T Consensus        79 ~g~v~~ys~~---~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~~-------~~~~~~~  147 (541)
T KOG4547|consen   79 QGSVLLYSVA---GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRIW-------KEQKPLV  147 (541)
T ss_pred             CccEEEEEec---CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeeee-------ccCCCcc
Confidence            4455555554   333333332 5789999999999998889988 99999999999 67777776       6677779


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC-----CCEEEEe
Q 014005          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----GQHLLSR  345 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d-----g~~l~s~  345 (432)
                      .+++.+||+ .++++|+  +.|++||+.+.+.    +..|.+|             .++|.++.|-.+     |.|+.++
T Consensus       148 ~sl~is~D~-~~l~~as--~~ik~~~~~~kev----v~~ftgh-------------~s~v~t~~f~~~~~g~~G~~vLss  207 (541)
T KOG4547|consen  148 SSLCISPDG-KILLTAS--RQIKVLDIETKEV----VITFTGH-------------GSPVRTLSFTTLIDGIIGKYVLSS  207 (541)
T ss_pred             ceEEEcCCC-CEEEecc--ceEEEEEccCceE----EEEecCC-------------CcceEEEEEEEeccccccceeeec
Confidence            999999998 8898876  4699999999887    7999998             889999999887     8888885


Q ss_pred             eC--CeEEEEec
Q 014005          346 DY--MNLKVFRY  355 (432)
Q Consensus       346 ~~--~~i~iwd~  355 (432)
                      ..  .-+.+|-+
T Consensus       208 a~~~r~i~~w~v  219 (541)
T KOG4547|consen  208 AAAERGITVWVV  219 (541)
T ss_pred             cccccceeEEEE
Confidence            33  77888877

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.41  E-value=1.8e-11  Score=101.20  Aligned_cols=154  Identities=13%  Similarity=0.214  Sum_probs=104.8

Q ss_pred             eEEEEEEcCCCCEEEEEeC----------CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          117 NRVRWCAAPNGSMFILSTN----------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                      ..+.|  +++|++|+.-..          -+...+|.++.... ....+..          ...+.|.+++|+|++..++
T Consensus         9 ~~~~W--~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l----------~~~~~I~~~~WsP~g~~fa   75 (194)
T PF08662_consen    9 AKLHW--QPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIEL----------KKEGPIHDVAWSPNGNEFA   75 (194)
T ss_pred             EEEEe--cccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeec----------cCCCceEEEEECcCCCEEE
Confidence            35778  888988766433          13455565533221 1111111          1135699999999998865


Q ss_pred             cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c---CCeEEEEeCCCCCceeeEeecCCCC
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSN  262 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~---d~~i~lwd~~~~~~~~~~~~~~~~~  262 (432)
                      ......+..+.+||++    .+.+..+   +...++.+.|+|+|++++++ .   .|.+.+||.+ ..+.+...      
T Consensus        76 vi~g~~~~~v~lyd~~----~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~-~~~~i~~~------  141 (194)
T PF08662_consen   76 VIYGSMPAKVTLYDVK----GKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR-KKKKISTF------  141 (194)
T ss_pred             EEEccCCcccEEEcCc----ccEeEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC-CCEEeecc------
Confidence            5433226799999996    3444444   34678899999999999976 2   4679999999 55555532      


Q ss_pred             cCCCCcceEEEEEcCCCCcEEEEEeC------CCeEEEEEcccccc
Q 014005          263 MDDLTEVITSAEFHPIYCNLLAYSSS------RGFVRLVDMRQSAL  302 (432)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~~~~~------dg~i~iwd~~~~~~  302 (432)
                        .| ..++.++|+|+| ++|+++..      |+.++||+.. |++
T Consensus       142 --~~-~~~t~~~WsPdG-r~~~ta~t~~r~~~dng~~Iw~~~-G~~  182 (194)
T PF08662_consen  142 --EH-SDATDVEWSPDG-RYLATATTSPRLRVDNGFKIWSFQ-GRL  182 (194)
T ss_pred             --cc-CcEEEEEEcCCC-CEEEEEEeccceeccccEEEEEec-CeE
Confidence              23 347899999999 89988864      7889999986 443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.39  E-value=3.7e-10  Score=102.97  Aligned_cols=254  Identities=13%  Similarity=0.156  Sum_probs=144.0

Q ss_pred             EEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcce
Q 014005           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (432)
Q Consensus        37 ~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (432)
                      .+.|+|||+++.+++.||.|.++|+.+.+.+                           .+++.-             ...
T Consensus        41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v---------------------------~~i~~G-------------~~~   80 (369)
T PF02239_consen   41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVV---------------------------ATIKVG-------------GNP   80 (369)
T ss_dssp             EEE-TT-SSEEEEEETTSEEEEEETTSSSEE---------------------------EEEE-S-------------SEE
T ss_pred             EEEecCCCCEEEEEcCCCeEEEEECCcccEE---------------------------EEEecC-------------CCc
Confidence            4679999999999999999999999987643                           444433             345


Q ss_pred             eEEEEEEcCCCCEEEEEe-CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-ceecceeeccc
Q 014005          117 NRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLEWTENM  194 (432)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~  194 (432)
                      .++++  ++||++++++. ..+.+.++|.++.+..+.......+      ....+..+..+..++... +++....  .+
T Consensus        81 ~~i~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~------~~~~~~Rv~aIv~s~~~~~fVv~lkd--~~  150 (369)
T PF02239_consen   81 RGIAV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP------VDGPESRVAAIVASPGRPEFVVNLKD--TG  150 (369)
T ss_dssp             EEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-------TTTS---EEEEEE-SSSSEEEEEETT--TT
T ss_pred             ceEEE--cCCCCEEEEEecCCCceeEeccccccceeeccccccc------ccccCCCceeEEecCCCCEEEEEEcc--CC
Confidence            77899  89999998875 6899999999887644332211100      000123455555556655 4444333  45


Q ss_pred             eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCC-----------
Q 014005          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPS-----------  261 (432)
Q Consensus       195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~-----------  261 (432)
                      .+-+.|.... .....+.+  ..........|+|++++++++  .++.+-++|.+ ++.....++....           
T Consensus       151 ~I~vVdy~d~-~~~~~~~i--~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~-~~k~v~~i~~g~~p~~~~~~~~ph  226 (369)
T PF02239_consen  151 EIWVVDYSDP-KNLKVTTI--KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK-TGKLVALIDTGKKPHPGPGANFPH  226 (369)
T ss_dssp             EEEEEETTTS-SCEEEEEE--E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT-TTEEEEEEE-SSSBEETTEEEEEE
T ss_pred             eEEEEEeccc-cccceeee--cccccccccccCcccceeeecccccceeEEEeec-cceEEEEeeccccccccccccccC
Confidence            6666676532 11122222  344567789999999998776  67899999987 3433332221100           


Q ss_pred             -------------------------C-c-----------CCCCcceEEEEEcCCCCcEEEEE----eCCCeEEEEEcccc
Q 014005          262 -------------------------N-M-----------DDLTEVITSAEFHPIYCNLLAYS----SSRGFVRLVDMRQS  300 (432)
Q Consensus       262 -------------------------~-~-----------~~~~~~v~~~~~~p~~~~~l~~~----~~dg~i~iwd~~~~  300 (432)
                                               . .           ...... .-+..||++ +++.+.    ...+.|.++|.++.
T Consensus       227 p~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~~~~v~viD~~tl  304 (369)
T PF02239_consen  227 PGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPDADTVQVIDKKTL  304 (369)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred             CCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCCCceEEEEECcCc
Confidence                                     0 0           000111 345678998 777777    45589999999987


Q ss_pred             ccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe--eC-CeEEEEec---CcceeEe
Q 014005          301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--DY-MNLKVFRY---EPVMTLS  362 (432)
Q Consensus       301 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~--~~-~~i~iwd~---~~~~~~~  362 (432)
                      +.    ...+...+            ...+..+.|++||+++..+  +. +.|.+||.   +.++.+.
T Consensus       305 ~~----~~~i~~~~------------~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  305 KV----VKTITPGP------------GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EE----EE-HHHHH------------T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             ce----eEEEeccC------------CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            54    35554310            1248899999999977553  33 49999999   4444444

...

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.39  E-value=1.5e-10  Score=97.48  Aligned_cols=244  Identities=13%  Similarity=0.131  Sum_probs=155.4

Q ss_pred             CcEEEEEEcCCCCEEE-EecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           33 DIVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      +.|.-+.|..+..+++ ....|+.|.+|++...+                           ....+...+          
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe---------------------------w~ckIdeg~----------   91 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE---------------------------WYCKIDEGQ----------   91 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecce---------------------------eEEEeccCC----------
Confidence            4577788988877654 45678899999997754                           112344444          


Q ss_pred             hhcceeEEEEEEcCCCCE-EEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          112 IEEKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                        ..+..++|  +|||+. |.++..|-.|.+|.+.+.+...+.-..              ..+..++|++++++.+..+.
T Consensus        92 --agls~~~W--SPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK--------------~~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen   92 --AGLSSISW--SPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK--------------TNVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             --CcceeeeE--CCCcceEeeeecceeEEEEEEeccceeEEecccc--------------cCceeEEECCCCceeeeeec
Confidence              78999999  899955 556677899999999887644332111              34466677777766554431


Q ss_pred             ---------------------------------ec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE
Q 014005          191 ---------------------------------TE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA  236 (432)
Q Consensus       191 ---------------------------------~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  236 (432)
                                                       .+ +..+.+||--..   -.+..+  .-.-.+..++|+|-++++++|
T Consensus       154 rDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le---ykv~aY--e~~lG~k~v~wsP~~qflavG  228 (447)
T KOG4497|consen  154 RDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE---YKVYAY--ERGLGLKFVEWSPCNQFLAVG  228 (447)
T ss_pred             ccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh---heeeee--eeccceeEEEeccccceEEee
Confidence                                             11 335666664311   111111  223468899999999999999


Q ss_pred             -cCCeEEEEeCC---------------CC------------------------------------------CceeeEeec
Q 014005          237 -DDLRINLWNLE---------------IS------------------------------------------DQCFNIVDM  258 (432)
Q Consensus       237 -~d~~i~lwd~~---------------~~------------------------------------------~~~~~~~~~  258 (432)
                       .|+.+++.+--               ..                                          ....+.-..
T Consensus       229 syD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~l  308 (447)
T KOG4497|consen  229 SYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKL  308 (447)
T ss_pred             ccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecc
Confidence             99988875420               00                                          000000001


Q ss_pred             CC-CCcCCCCcceEEEEEcCCCCcEEEEEeC--CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEE
Q 014005          259 KP-SNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (432)
Q Consensus       259 ~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~  335 (432)
                      +| .........+-.++|++|. .++++-..  -+.+.+||++.-++    -..+..              ..+|....|
T Consensus       309 kp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l----~avLiQ--------------k~piraf~W  369 (447)
T KOG4497|consen  309 KPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKL----HAVLIQ--------------KHPIRAFEW  369 (447)
T ss_pred             cCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhh----hhhhhh--------------ccceeEEEe
Confidence            11 1112223457789999998 88876542  25789999997654    234444              468999999


Q ss_pred             cCCCCEEEEee-CCeEEEEec
Q 014005          336 ANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       336 s~dg~~l~s~~-~~~i~iwd~  355 (432)
                      +|....|+.+. ..++++|..
T Consensus       370 dP~~prL~vctg~srLY~W~p  390 (447)
T KOG4497|consen  370 DPGRPRLVVCTGKSRLYFWAP  390 (447)
T ss_pred             CCCCceEEEEcCCceEEEEcC
Confidence            99887777653 378999988

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.38  E-value=1.7e-10  Score=108.93  Aligned_cols=192  Identities=14%  Similarity=0.123  Sum_probs=125.4

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCC---CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc-e
Q 014005          114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL-E  189 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~  189 (432)
                      ..+...+|  +|||++++.++.+   ..|.+||+.+++...+....              +....+.|+|++..++.. .
T Consensus       190 ~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~--------------~~~~~~~~spDg~~l~~~~~  253 (417)
T TIGR02800       190 EPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP--------------GMNGAPAFSPDGSKLAVSLS  253 (417)
T ss_pred             CceecccC--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC--------------CCccceEECCCCCEEEEEEC
Confidence            56788899  8999999887644   47999999888655443322              345568899999876643 3


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      ......+.+|++..   +...+ + ..+........|+|+++.++..  .++  .|+++|+. ++.. ..+       ..
T Consensus       254 ~~~~~~i~~~d~~~---~~~~~-l-~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~-~~~~-~~l-------~~  319 (417)
T TIGR02800       254 KDGNPDIYVMDLDG---KQLTR-L-TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD-GGEV-RRL-------TF  319 (417)
T ss_pred             CCCCccEEEEECCC---CCEEE-C-CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC-CCCE-EEe-------ec
Confidence            31134688888763   33222 2 2344445577899999988765  333  57777777 3332 222       23


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCC---eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  342 (432)
                      +...+....|+|++ ++++.++.++   .|.+||+.++..     +.+..+              .......|+|||++|
T Consensus       320 ~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~-----~~l~~~--------------~~~~~p~~spdg~~l  379 (417)
T TIGR02800       320 RGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGGE-----RVLTDT--------------GLDESPSFAPNGRMI  379 (417)
T ss_pred             CCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCCe-----EEccCC--------------CCCCCceECCCCCEE
Confidence            34456788999999 8888877765   789999887543     444331              223456899999988


Q ss_pred             EEe-eC---CeEEEEec
Q 014005          343 LSR-DY---MNLKVFRY  355 (432)
Q Consensus       343 ~s~-~~---~~i~iwd~  355 (432)
                      +.. .+   ..+++.+.
T Consensus       380 ~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       380 LYATTRGGRGVLGLVST  396 (417)
T ss_pred             EEEEeCCCcEEEEEEEC
Confidence            874 32   34555554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.37  E-value=2.1e-09  Score=98.01  Aligned_cols=189  Identities=13%  Similarity=0.177  Sum_probs=121.5

Q ss_pred             EEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCC
Q 014005           47 LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN  126 (432)
Q Consensus        47 l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~  126 (432)
                      +++-..++.|.+.|..+.+.+                           ..+....            ..-..+.+  ++|
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~---------------------------~~i~~~~------------~~h~~~~~--s~D   47 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVV---------------------------ARIPTGG------------APHAGLKF--SPD   47 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEE---------------------------EEEE-ST------------TEEEEEE---TT-
T ss_pred             EEEecCCCEEEEEECCCCeEE---------------------------EEEcCCC------------CceeEEEe--cCC
Confidence            345667899999998886533                           5555433            33344677  999


Q ss_pred             CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeeccccc
Q 014005          127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH  206 (432)
Q Consensus       127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~  206 (432)
                      |+++++++.||.|.++|+.+.+........              .....+++++++++++.+... .+.+.++|.+   +
T Consensus        48 gr~~yv~~rdg~vsviD~~~~~~v~~i~~G--------------~~~~~i~~s~DG~~~~v~n~~-~~~v~v~D~~---t  109 (369)
T PF02239_consen   48 GRYLYVANRDGTVSVIDLATGKVVATIKVG--------------GNPRGIAVSPDGKYVYVANYE-PGTVSVIDAE---T  109 (369)
T ss_dssp             SSEEEEEETTSEEEEEETTSSSEEEEEE-S--------------SEEEEEEE--TTTEEEEEEEE-TTEEEEEETT---T
T ss_pred             CCEEEEEcCCCeEEEEECCcccEEEEEecC--------------CCcceEEEcCCCCEEEEEecC-CCceeEeccc---c
Confidence            999999999999999999988844333222              456789999999999877642 6799999988   5


Q ss_pred             ceeeEEeecC------CCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCC
Q 014005          207 ARCQKVYPHA------HDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  278 (432)
Q Consensus       207 ~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  278 (432)
                      .+.++.+..+      ...++.++..+|....++..  +.+.|.+.|.... ..+..-.      ...........|+|+
T Consensus       110 le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-~~~~~~~------i~~g~~~~D~~~dpd  182 (369)
T PF02239_consen  110 LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP-KNLKVTT------IKVGRFPHDGGFDPD  182 (369)
T ss_dssp             --EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS-SCEEEEE------EE--TTEEEEEE-TT
T ss_pred             ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc-cccceee------ecccccccccccCcc
Confidence            6666655221      34567888888888866655  5688888888733 3222110      122344677899999


Q ss_pred             CCcEEEE-EeCCCeEEEEEcccccc
Q 014005          279 YCNLLAY-SSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       279 ~~~~l~~-~~~dg~i~iwd~~~~~~  302 (432)
                      + ++++. ...++.|.++|..++++
T Consensus       183 g-ry~~va~~~sn~i~viD~~~~k~  206 (369)
T PF02239_consen  183 G-RYFLVAANGSNKIAVIDTKTGKL  206 (369)
T ss_dssp             S-SEEEEEEGGGTEEEEEETTTTEE
T ss_pred             c-ceeeecccccceeEEEeeccceE
Confidence            9 66555 45677899999887654

...

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=8.1e-10  Score=103.38  Aligned_cols=199  Identities=14%  Similarity=0.075  Sum_probs=122.2

Q ss_pred             cceeEEEEEEcCCCCE--E-EEEeCC--CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          114 EKINRVRWCAAPNGSM--F-ILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~--l-~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                      ..+.+-.|  +|||+.  + +++..+  ..|.+.++.+++...+..+.              +......|+|+++.++..
T Consensus       185 ~~~~sP~w--SPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~--------------g~~~~p~wSPDG~~Laf~  248 (428)
T PRK01029        185 SLSITPTW--MHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ--------------GNQLMPTFSPRKKLLAFI  248 (428)
T ss_pred             CCcccceE--ccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC--------------CCccceEECCCCCEEEEE
Confidence            45567789  899875  2 244333  35777788888766655443              334567899999888765


Q ss_pred             eeec---cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEe--CCCCCceeeEeecCCC
Q 014005          189 EWTE---NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWN--LEISDQCFNIVDMKPS  261 (432)
Q Consensus       189 ~~~~---~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd--~~~~~~~~~~~~~~~~  261 (432)
                      ....   +-.+..|++.....+...+.. ..........+|+|||+.|+..  .+|...+|.  ++..+.....+     
T Consensus       249 s~~~g~~di~~~~~~~~~g~~g~~~~lt-~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l-----  322 (428)
T PRK01029        249 SDRYGNPDLFIQSFSLETGAIGKPRRLL-NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL-----  322 (428)
T ss_pred             ECCCCCcceeEEEeecccCCCCcceEee-cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe-----
Confidence            4211   223444665532123333333 3333345678999999988865  466555554  43112222222     


Q ss_pred             CcCCCCcceEEEEEcCCCCcEEEEEeCC---CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005          262 NMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (432)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d  338 (432)
                        ..+...+....|+||| +.|+..+.+   ..|.+||+.+++.     +.+...             ...+....|+||
T Consensus       323 --t~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~-----~~Lt~~-------------~~~~~~p~wSpD  381 (428)
T PRK01029        323 --TKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRD-----YQLTTS-------------PENKESPSWAID  381 (428)
T ss_pred             --ccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCe-----EEccCC-------------CCCccceEECCC
Confidence              3333456788999999 777766543   3699999988764     444331             235667899999


Q ss_pred             CCEEEE-ee---CCeEEEEec
Q 014005          339 GQHLLS-RD---YMNLKVFRY  355 (432)
Q Consensus       339 g~~l~s-~~---~~~i~iwd~  355 (432)
                      |++|+. +.   ...|+++|+
T Consensus       382 G~~L~f~~~~~g~~~L~~vdl  402 (428)
T PRK01029        382 SLHLVYSAGNSNESELYLISL  402 (428)
T ss_pred             CCEEEEEECCCCCceEEEEEC
Confidence            998874 32   267888888

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.32  E-value=1.3e-11  Score=124.37  Aligned_cols=251  Identities=15%  Similarity=0.196  Sum_probs=170.5

Q ss_pred             cccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccccc
Q 014005            9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH   88 (432)
Q Consensus         9 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (432)
                      +..+.|.-+...++........+-..|.++.=+|...+.+||+.||.+++|....+..+                     
T Consensus      2185 ~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v--------------------- 2243 (2439)
T KOG1064|consen 2185 PSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV--------------------- 2243 (2439)
T ss_pred             cccCCccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE---------------------
Confidence            44566666633344444444555678999999999999999999999999998877633                     


Q ss_pred             CCcceeeeee-cCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccc
Q 014005           89 PEYRYKTEFQ-SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL  167 (432)
Q Consensus        89 p~~~~~~~~~-~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  167 (432)
                            ..+. +-+            ..|+.+.|  +.+|+.+..+..||.+.+|.+..   +.....+.|.        
T Consensus      2244 ------~~~rt~g~------------s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~p---k~~~s~qchn-------- 2292 (2439)
T KOG1064|consen 2244 ------VCFRTAGN------------SRVTRSRF--NHQGNKFGIVDGDGDLSLWQASP---KPYTSWQCHN-------- 2292 (2439)
T ss_pred             ------EEeeccCc------------chhhhhhh--cccCCceeeeccCCceeecccCC---cceeccccCC--------
Confidence                  2222 222            67899999  78999999999999999999872   2333444443        


Q ss_pred             ccccccccccCCCCCcceecceeec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEe
Q 014005          168 LAEKNFMNEHNPPSFAHGYHLEWTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN  245 (432)
Q Consensus       168 ~~~~~i~~~~~~~~~~~~~~~~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd  245 (432)
                         ....++.|-.  ..+++.+... ++.+.+||........++.   ..|.+.++++++-|..+.+++| .+|.|++||
T Consensus      2293 ---k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~---~~H~~gaT~l~~~P~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2293 ---KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH---TCHDGGATVLAYAPKHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred             ---ccccceeeee--hhhhccccCCCCCcccchhcccCcccceee---eecCCCceEEEEcCcceEEEecCCcCcEEEee
Confidence               3344444433  4444444433 7799999987554445555   5799999999999999999999 999999999


Q ss_pred             CCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceee
Q 014005          246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (432)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  325 (432)
                      ++ ..+..+.+       +.         ++ .. .+|++|+..|.++||++..-.+    +..+..   .....++|.-
T Consensus      2365 ~r-qrql~h~~-------~~---------~~-~~-~~f~~~ss~g~ikIw~~s~~~l----l~~~p~---e~ak~gfFr~ 2418 (2439)
T KOG1064|consen 2365 IR-QRQLRHTF-------QA---------LD-TR-EYFVTGSSEGNIKIWRLSEFGL----LHTFPS---EHAKQGFFRN 2418 (2439)
T ss_pred             hH-HHHHHHHh-------hh---------hh-hh-heeeccCcccceEEEEccccch----hhcCch---hhcccchhhh
Confidence            99 45544433       21         44 34 7899999999999999986544    454443   1111222222


Q ss_pred             eecceeEEEEcCCCCEEEEeeCC
Q 014005          326 IIASISDIKFANDGQHLLSRDYM  348 (432)
Q Consensus       326 ~~~~v~~~~~s~dg~~l~s~~~~  348 (432)
                      ..   ..+-..+.++++.+|.|+
T Consensus      2419 ~g---~Q~~v~~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2419 IG---MQINVGQCNRIFSCGADG 2438 (2439)
T ss_pred             cC---ceeeeccCceEEEecCCC
Confidence            11   334445556666666554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=5.3e-10  Score=105.74  Aligned_cols=199  Identities=17%  Similarity=0.211  Sum_probs=122.4

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEeccc---ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ..+.+.+....|+|+|+.|+..+.+   ..|.+|++++++..                            .+....    
T Consensus       195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~----------------------------~l~~~~----  242 (430)
T PRK00178        195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE----------------------------QITNFE----  242 (430)
T ss_pred             ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE----------------------------EccCCC----
Confidence            3567788999999999999876543   36888898876421                            121122    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEE-EeCCC--eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  182 (432)
                              +.+....|  +|||+.++. .+.+|  .|.+||+.+++...+...   .           .......|+|++
T Consensus       243 --------g~~~~~~~--SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~---~-----------~~~~~~~~spDg  298 (430)
T PRK00178        243 --------GLNGAPAW--SPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNH---P-----------AIDTEPFWGKDG  298 (430)
T ss_pred             --------CCcCCeEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEEcccC---C-----------CCcCCeEECCCC
Confidence                    33456889  899998874 44444  688889988775544322   1           334567899999


Q ss_pred             cceecceeec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-CC--eEEEEeCCCCCceeeEee
Q 014005          183 AHGYHLEWTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DL--RINLWNLEISDQCFNIVD  257 (432)
Q Consensus       183 ~~~~~~~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~--~i~lwd~~~~~~~~~~~~  257 (432)
                      ..++..+... ...+.++++.   .++..+.. . .........|+|+|+.++.. . ++  .|.++|+. ++.. +.+ 
T Consensus       299 ~~i~f~s~~~g~~~iy~~d~~---~g~~~~lt-~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~-tg~~-~~l-  370 (430)
T PRK00178        299 RTLYFTSDRGGKPQIYKVNVN---GGRAERVT-F-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ-RGSV-RIL-  370 (430)
T ss_pred             CEEEEEECCCCCceEEEEECC---CCCEEEee-c-CCCCccceEECCCCCEEEEEEccCCceEEEEEECC-CCCE-EEc-
Confidence            8776654311 2356666665   33333322 1 12233457899999998866 3 43  57888888 4433 322 


Q ss_pred             cCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC-C--eEEEEEccc
Q 014005          258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-G--FVRLVDMRQ  299 (432)
Q Consensus       258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g--~i~iwd~~~  299 (432)
                            .. ........|+|+| +.++..+.+ |  .+.++++..
T Consensus       371 ------t~-~~~~~~p~~spdg-~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        371 ------TD-TSLDESPSVAPNG-TMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             ------cC-CCCCCCceECCCC-CEEEEEEecCCceEEEEEECCC
Confidence                  11 1112246899999 777666543 3  466777653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=8.7e-10  Score=104.26  Aligned_cols=192  Identities=14%  Similarity=0.113  Sum_probs=122.2

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCC---CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce-
Q 014005          114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE-  189 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-  189 (432)
                      ..+....|  +|||+.|+..+.+   ..|.+|++.+++.+.+....              +......|+|++..++... 
T Consensus       199 ~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~--------------g~~~~~~~SpDG~~la~~~~  262 (430)
T PRK00178        199 EPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE--------------GLNGAPAWSPDGSKLAFVLS  262 (430)
T ss_pred             CceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC--------------CCcCCeEECCCCCEEEEEEc
Confidence            67888999  8999998876543   36899999888765543322              3344688999998877443 


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      ...+..+.++|+.   .+...+ + ..+........|+|+|+.++..  .++  .|+++|+. ++...+..      ..+
T Consensus       263 ~~g~~~Iy~~d~~---~~~~~~-l-t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~-~g~~~~lt------~~~  330 (430)
T PRK00178        263 KDGNPEIYVMDLA---SRQLSR-V-TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN-GGRAERVT------FVG  330 (430)
T ss_pred             cCCCceEEEEECC---CCCeEE-c-ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEee------cCC
Confidence            2113367778887   333332 3 3444556678999999987755  344  57777776 34332221      111


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCC-C--eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSR-G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  342 (432)
                        .......|+|++ +.|+..+.+ +  .|.++|+.+++.     +.+..              ........|+|||++|
T Consensus       331 --~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-----~~lt~--------------~~~~~~p~~spdg~~i  388 (430)
T PRK00178        331 --NYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV-----RILTD--------------TSLDESPSVAPNGTML  388 (430)
T ss_pred             --CCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCE-----EEccC--------------CCCCCCceECCCCCEE
Confidence              223457899999 777766543 3  588889887763     33332              1122356899999998


Q ss_pred             EEe-eC---CeEEEEec
Q 014005          343 LSR-DY---MNLKVFRY  355 (432)
Q Consensus       343 ~s~-~~---~~i~iwd~  355 (432)
                      +.. .+   ..+.++++
T Consensus       389 ~~~~~~~g~~~l~~~~~  405 (430)
T PRK00178        389 IYATRQQGRGVLMLVSI  405 (430)
T ss_pred             EEEEecCCceEEEEEEC
Confidence            764 22   34666666

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.31  E-value=4.9e-10  Score=105.76  Aligned_cols=198  Identities=13%  Similarity=0.143  Sum_probs=125.4

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEeccc---ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ..+...+...+|+|+|++|+.++.+   ..|.+||+.+++..                            .+..+.    
T Consensus       186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----------------------------~~~~~~----  233 (417)
T TIGR02800       186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----------------------------KVASFP----  233 (417)
T ss_pred             ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----------------------------EeecCC----
Confidence            3455678899999999999887643   47999999876421                            222333    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEE-eCCC--eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILS-TNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  182 (432)
                              ..+.+++|  +||++.|+.. +.++  .|.+||+.++....+....              .......|++++
T Consensus       234 --------~~~~~~~~--spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--------------~~~~~~~~s~dg  289 (417)
T TIGR02800       234 --------GMNGAPAF--SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP--------------GIDTEPSWSPDG  289 (417)
T ss_pred             --------CCccceEE--CCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC--------------CCCCCEEECCCC
Confidence                    45567889  8999877654 4443  5888898877654443221              223456788999


Q ss_pred             cceecceeec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC---eEEEEeCCCCCceeeEee
Q 014005          183 AHGYHLEWTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL---RINLWNLEISDQCFNIVD  257 (432)
Q Consensus       183 ~~~~~~~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~---~i~lwd~~~~~~~~~~~~  257 (432)
                      ..++..+... ...+.++++.   ..+..+ + ..+........|+|++++++.+ .++   .|.+||+. ++. ...+ 
T Consensus       290 ~~l~~~s~~~g~~~iy~~d~~---~~~~~~-l-~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~-~~~-~~~l-  361 (417)
T TIGR02800       290 KSIAFTSDRGGSPQIYMMDAD---GGEVRR-L-TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD-GGG-ERVL-  361 (417)
T ss_pred             CEEEEEECCCCCceEEEEECC---CCCEEE-e-ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC-CCC-eEEc-
Confidence            8876554311 2356666765   333222 2 2344567788999999999877 554   78888888 333 2222 


Q ss_pred             cCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC---eEEEEEcc
Q 014005          258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMR  298 (432)
Q Consensus       258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~iwd~~  298 (432)
                            ... .......|+|++ +.|+.++.++   .+.+.+..
T Consensus       362 ------~~~-~~~~~p~~spdg-~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       362 ------TDT-GLDESPSFAPNG-RMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             ------cCC-CCCCCceECCCC-CEEEEEEeCCCcEEEEEEECC
Confidence                  111 123456899999 7777666544   35555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.30  E-value=1.4e-09  Score=91.27  Aligned_cols=241  Identities=12%  Similarity=0.109  Sum_probs=157.5

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee--
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT--  191 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--  191 (432)
                      ....+++|  +.|..-++.|..+| .++|+.+.-+  .....+...         .+-.+..+.|-.+---++.|...  
T Consensus         6 ~~~lsvs~--NQD~ScFava~~~G-friyn~~P~k--e~~~r~~~~---------~G~~~veMLfR~N~laLVGGg~~pk   71 (346)
T KOG2111|consen    6 PKTLSVSF--NQDHSCFAVATDTG-FRIYNCDPFK--ESASRQFID---------GGFKIVEMLFRSNYLALVGGGSRPK   71 (346)
T ss_pred             CceeEEEE--ccCCceEEEEecCc-eEEEecCchh--hhhhhcccc---------CchhhhhHhhhhceEEEecCCCCCC
Confidence            44566999  78888888888766 8999886422  111111111         01223333333332233333321  


Q ss_pred             -ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          192 -ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       192 -~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                       +.+.+.|||=.   ..+++..+  .-..+|.++.+.++  .+++.-.+.|++|.....-+.+..++.     .......
T Consensus        72 y~pNkviIWDD~---k~~~i~el--~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et-----~~NPkGl  139 (346)
T KOG2111|consen   72 YPPNKVIIWDDL---KERCIIEL--SFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIET-----RSNPKGL  139 (346)
T ss_pred             CCCceEEEEecc---cCcEEEEE--EeccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeec-----ccCCCce
Confidence             25689999944   66677665  45678999999765  466668899999999855555555522     1222234


Q ss_pred             EEEEEcCCCCcEEEEE-eCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-C
Q 014005          271 TSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~  348 (432)
                      .+++-+-.. .+||.- -.-|.|.|-|+...+.-  ....+..|             .+.|.+++.+-+|..+||++. |
T Consensus       140 C~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH-------------~s~Iacv~Ln~~Gt~vATaStkG  203 (346)
T KOG2111|consen  140 CSLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPN--APSIINAH-------------DSDIACVALNLQGTLVATASTKG  203 (346)
T ss_pred             EeecCCCCc-eEEEcCCCccceEEEEEhhhcCcC--CceEEEcc-------------cCceeEEEEcCCccEEEEeccCc
Confidence            444433333 555553 36689999999865431  12566676             899999999999999999866 5


Q ss_pred             -eEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          349 -NLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       349 -~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                       -|||||.   .++++++--.         .+..++.+.++.+..+++..|..|+++||..
T Consensus       204 TLIRIFdt~~g~~l~E~RRG~---------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l  255 (346)
T KOG2111|consen  204 TLIRIFDTEDGTLLQELRRGV---------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSL  255 (346)
T ss_pred             EEEEEEEcCCCcEeeeeecCC---------chheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence             5799999   6777765432         3556677777777888999999999999983

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=9.1e-10  Score=103.86  Aligned_cols=191  Identities=13%  Similarity=0.127  Sum_probs=117.7

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCC---CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          114 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                      ..+....|  +|||+.|+..+.+   ..|.+||+.+++...+....              +......|+|++..++....
T Consensus       218 ~~~~~p~w--SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~--------------g~~~~~~wSPDG~~La~~~~  281 (448)
T PRK04792        218 EPLMSPAW--SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP--------------GINGAPRFSPDGKKLALVLS  281 (448)
T ss_pred             CcccCceE--CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC--------------CCcCCeeECCCCCEEEEEEe
Confidence            67888999  8999998876543   35888899887755443322              23346789999998765432


Q ss_pred             eccc--eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCCCCCceeeEeecCCCCcC
Q 014005          191 TENM--ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       191 ~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~  264 (432)
                      . ++  .|.++|+.   .++..+ + ..+.......+|+|||+.++..  .++  .|+++|++ +++..+..      ..
T Consensus       282 ~-~g~~~Iy~~dl~---tg~~~~-l-t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-~g~~~~Lt------~~  348 (448)
T PRK04792        282 K-DGQPEIYVVDIA---TKALTR-I-TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-SGKVSRLT------FE  348 (448)
T ss_pred             C-CCCeEEEEEECC---CCCeEE-C-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEEe------cC
Confidence            1 34  46667776   333333 3 3344556778999999988765  344  45666666 34332221      12


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEeC-CC--eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~  341 (432)
                      +  ......+|+|+| +.|+..+. ++  .|.++|+.+++.     ..+...              .......|+|||++
T Consensus       349 g--~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~-----~~lt~~--------------~~d~~ps~spdG~~  406 (448)
T PRK04792        349 G--EQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAM-----QVLTST--------------RLDESPSVAPNGTM  406 (448)
T ss_pred             C--CCCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCe-----EEccCC--------------CCCCCceECCCCCE
Confidence            2  223457899999 66666554 44  455678777653     333331              12224579999998


Q ss_pred             EEEe-eC---CeEEEEec
Q 014005          342 LLSR-DY---MNLKVFRY  355 (432)
Q Consensus       342 l~s~-~~---~~i~iwd~  355 (432)
                      |+.. ..   ..+++++.
T Consensus       407 I~~~~~~~g~~~l~~~~~  424 (448)
T PRK04792        407 VIYSTTYQGKQVLAAVSI  424 (448)
T ss_pred             EEEEEecCCceEEEEEEC
Confidence            8763 22   34666776

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.29  E-value=2.6e-08  Score=90.97  Aligned_cols=257  Identities=9%  Similarity=0.067  Sum_probs=150.5

Q ss_pred             cceeEEEEEEcCCCCEEEEEeC----CCeEEEEEccC--cceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          114 EKINRVRWCAAPNGSMFILSTN----DKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~----d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                      ....-+++  +|++++|.+...    ++.|..|++..  +++..+.......           .....++.++++.+++.
T Consensus        37 ~~Ps~l~~--~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g-----------~~p~~i~~~~~g~~l~v  103 (345)
T PF10282_consen   37 ENPSWLAV--SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG-----------SSPCHIAVDPDGRFLYV  103 (345)
T ss_dssp             SSECCEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS-----------SCEEEEEECTTSSEEEE
T ss_pred             CCCceEEE--EeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC-----------CCcEEEEEecCCCEEEE
Confidence            34556788  889999988865    57999999876  4555544332111           34456888999999988


Q ss_pred             ceeeccceEEEEeecccc-cceeeEEee---------cCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeE
Q 014005          188 LEWTENMATKIANVGNSV-HARCQKVYP---------HAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNI  255 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~-~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~  255 (432)
                      +... ++.+.++++.... .......+.         ........++.++|+++++++.  ....|.+|+++.....+..
T Consensus       104 any~-~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~  182 (345)
T PF10282_consen  104 ANYG-GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP  182 (345)
T ss_dssp             EETT-TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE
T ss_pred             EEcc-CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE
Confidence            7642 7789999998531 122222220         1234568899999999998876  6779999999843322221


Q ss_pred             eecCCCCcCCCCcceEEEEEcCCCCcEE-EEEeCCCeEEEEEcc--ccccccccceeecccccccCCccceeeeecceeE
Q 014005          256 VDMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (432)
Q Consensus       256 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  332 (432)
                      ..  ... .......+.+.|+|++ +++ ++...++.|.++++.  ++..  +.++.....+.....       ......
T Consensus       183 ~~--~~~-~~~G~GPRh~~f~pdg-~~~Yv~~e~s~~v~v~~~~~~~g~~--~~~~~~~~~~~~~~~-------~~~~~~  249 (345)
T PF10282_consen  183 VD--SIK-VPPGSGPRHLAFSPDG-KYAYVVNELSNTVSVFDYDPSDGSL--TEIQTISTLPEGFTG-------ENAPAE  249 (345)
T ss_dssp             EE--EEE-CSTTSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEE--EEEEEEESCETTSCS-------SSSEEE
T ss_pred             ee--ccc-cccCCCCcEEEEcCCc-CEEEEecCCCCcEEEEeecccCCce--eEEEEeeeccccccc-------cCCcee
Confidence            10  001 2334568999999999 555 555578899999998  4432  112222211111110       136788


Q ss_pred             EEEcCCCCEEEEe--eCCeEEEEec-C---cceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          333 IKFANDGQHLLSR--DYMNLKVFRY-E---PVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       333 ~~~s~dg~~l~s~--~~~~i~iwd~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      ++++|||++|..+  ..+.|.+|++ .   .+..+..-..    ..   ..+-......+-.+.+++...++.|.+|+
T Consensus       250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~----~G---~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~  320 (345)
T PF10282_consen  250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT----GG---KFPRHFAFSPDGRYLYVANQDSNTVSVFD  320 (345)
T ss_dssp             EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE----SS---SSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC----CC---CCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence            9999999998875  3389999999 1   2332221110    00   00111111112234566777888999997

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.29  E-value=1.5e-08  Score=87.16  Aligned_cols=289  Identities=8%  Similarity=0.057  Sum_probs=181.9

Q ss_pred             ccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecc---cceEEEEEecC--CcCCCCccccchhhhcccc
Q 014005            8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVG--GKNTPNQHISRSELEKQMD   82 (432)
Q Consensus         8 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~   82 (432)
                      ......|.+...-|+....+.+.+.+..+=|+|+|++++|.++-.   +|.|.-|.++.  +++.               
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt---------------   79 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT---------------   79 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE---------------
Confidence            345667888766677778888888999999999999999888754   47788888875  3321               


Q ss_pred             ccccccCCccee--eeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeC-CCeEEEEEccC-cceeeeeecCCC
Q 014005           83 FTSTSHPEYRYK--TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRD-QKVKKIKEMDHF  158 (432)
Q Consensus        83 ~~~~~~p~~~~~--~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~-~~~~~~~~~~~~  158 (432)
                                ++  ....+              .+-..++.  ++++++++++.. .|.|.++-++. |.+........|
T Consensus        80 ----------~ln~~~~~g--------------~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h  133 (346)
T COG2706          80 ----------FLNRQTLPG--------------SPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKH  133 (346)
T ss_pred             ----------EeeccccCC--------------CCCeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeec
Confidence                      11  11122              23367888  899999999854 58899999854 544333222222


Q ss_pred             CccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--
Q 014005          159 PFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--  236 (432)
Q Consensus       159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--  236 (432)
                      ..- .........-+-...+.|+++++.+.... -..+.+|++..+.. .......-......+.|.|+|++++....  
T Consensus       134 ~g~-~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-~Dri~~y~~~dg~L-~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E  210 (346)
T COG2706         134 TGS-GPHERQESPHVHSANFTPDGRYLVVPDLG-TDRIFLYDLDDGKL-TPADPAEVKPGAGPRHIVFHPNGKYAYLVNE  210 (346)
T ss_pred             CCC-CCCccccCCccceeeeCCCCCEEEEeecC-CceEEEEEcccCcc-ccccccccCCCCCcceEEEcCCCcEEEEEec
Confidence            100 00000001125667889999988887652 23677888873311 11111112455678899999999987765  


Q ss_pred             cCCeEEEEeCCCCCceeeE---eecCCCCcCCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeecc
Q 014005          237 DDLRINLWNLEISDQCFNI---VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRD  312 (432)
Q Consensus       237 ~d~~i~lwd~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~  312 (432)
                      -+++|.+|..+.....++.   +..-|..+.+. .+.-.|..+|+| ++|.++. ....|.+|.+....-.   +.....
T Consensus       211 L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~-~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~---L~~~~~  285 (346)
T COG2706         211 LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT-NWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGK---LELVGI  285 (346)
T ss_pred             cCCEEEEEEEcCCCceEEEeeeeccCccccCCC-CceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCE---EEEEEE
Confidence            6999999999843333333   33333343332 456788999999 8777654 2337778776532211   122221


Q ss_pred             cccccCCccceeeeecceeEEEEcCCCCEEEEe-eC-CeEEEEec
Q 014005          313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKVFRY  355 (432)
Q Consensus       313 h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~-~~i~iwd~  355 (432)
                      .+.          ......+..|+++|++|+++ .+ ..|.+|..
T Consensus       286 ~~t----------eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~  320 (346)
T COG2706         286 TPT----------EGQFPRDFNINPSGRFLIAANQKSDNITVFER  320 (346)
T ss_pred             ecc----------CCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence            100          02346789999999999885 44 88999988

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=4.9e-10  Score=105.65  Aligned_cols=219  Identities=12%  Similarity=0.127  Sum_probs=129.0

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEeccc-c--eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRG-G--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~d-g--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ..+...+.+..|+|||+.|+..+.+ +  .|.+||+.+++..                         .+..+.       
T Consensus       214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-------------------------~lt~~~-------  261 (448)
T PRK04792        214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-------------------------KVTSFP-------  261 (448)
T ss_pred             ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------------------EecCCC-------
Confidence            3456678899999999998876543 2  5888888776421                         111122       


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEE-eCCCe--EEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILS-TNDKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  182 (432)
                              ......+|  +|||+.|+.. +.++.  |.++|+.+++...+...   .           .......|+|++
T Consensus       262 --------g~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~---~-----------~~~~~p~wSpDG  317 (448)
T PRK04792        262 --------GINGAPRF--SPDGKKLALVLSKDGQPEIYVVDIATKALTRITRH---R-----------AIDTEPSWHPDG  317 (448)
T ss_pred             --------CCcCCeeE--CCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccC---C-----------CCccceEECCCC
Confidence                    23346789  8999988654 55664  77778887765544322   1           334567899999


Q ss_pred             cceecceeec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCe--EEEEeCCCCCceeeEee
Q 014005          183 AHGYHLEWTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVD  257 (432)
Q Consensus       183 ~~~~~~~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~--i~lwd~~~~~~~~~~~~  257 (432)
                      .+++..+... ...+.++|+.   .++..+..  .........+|+|+|++++..  .++.  |.++|+. ++. ...+ 
T Consensus       318 ~~I~f~s~~~g~~~Iy~~dl~---~g~~~~Lt--~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~-~g~-~~~l-  389 (448)
T PRK04792        318 KSLIFTSERGGKPQIYRVNLA---SGKVSRLT--FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE-TGA-MQVL-  389 (448)
T ss_pred             CEEEEEECCCCCceEEEEECC---CCCEEEEe--cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECC-CCC-eEEc-
Confidence            9887654311 2345555665   33333221  122233457899999998865  4454  5556766 333 2322 


Q ss_pred             cCCCCcCCCCcceEEEEEcCCCCcEEEEEe-CCC--eEEEEEccccccccccceeecccccccCCccceeeeecceeEEE
Q 014005          258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  334 (432)
Q Consensus       258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~  334 (432)
                            ... .......|+|+| +.|+..+ .+|  .+.+++.. |+.    .+.+..+             .+.+...+
T Consensus       390 ------t~~-~~d~~ps~spdG-~~I~~~~~~~g~~~l~~~~~~-G~~----~~~l~~~-------------~g~~~~p~  443 (448)
T PRK04792        390 ------TST-RLDESPSVAPNG-TMVIYSTTYQGKQVLAAVSID-GRF----KARLPAG-------------QGEVKSPA  443 (448)
T ss_pred             ------cCC-CCCCCceECCCC-CEEEEEEecCCceEEEEEECC-CCc----eEECcCC-------------CCCcCCCc
Confidence                  111 112245799999 6666554 444  36777764 443    3444442             34566778


Q ss_pred             EcC
Q 014005          335 FAN  337 (432)
Q Consensus       335 ~s~  337 (432)
                      |+|
T Consensus       444 Wsp  446 (448)
T PRK04792        444 WSP  446 (448)
T ss_pred             cCC
Confidence            876

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=9e-09  Score=92.99  Aligned_cols=276  Identities=10%  Similarity=0.070  Sum_probs=156.1

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ....+..+++++|+++|.+. +..++|++.......                             +....          
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~-----------------------------lt~~~----------   73 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVV-----------------------------LCVEL----------   73 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEE-----------------------------EEecc----------
Confidence            34467788999999988865 458999998876421                             11111          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEE-----eCC-----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC
Q 014005          112 IEEKINRVRWCAAPNGSMFILS-----TND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~-----~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  181 (432)
                        ..+.++.|  +|-+.+|.+=     ..+     -.+++|+++++..........           .++  -...|+.+
T Consensus        74 --~~~~~L~f--SP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~-----------Q~~--W~~qfs~d  136 (566)
T KOG2315|consen   74 --KKTYDLLF--SPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKM-----------QNG--WVPQFSID  136 (566)
T ss_pred             --ceeeeeee--cccccccccccccccccCCCCCCCceeeeeeccceehhheehhh-----------hcC--cccccccc
Confidence              45678889  8888887762     112     347799998854222111111           112  25556655


Q ss_pred             CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC--CEEEEE------cCCeEEEEeCCC-----
Q 014005          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA------DDLRINLWNLEI-----  248 (432)
Q Consensus       182 ~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~------~d~~i~lwd~~~-----  248 (432)
                      ..+.+-..   .+.+.+|++..  .......   -|...|+.+.++|.+  ..+|+-      .-+.+++|....     
T Consensus       137 Esl~arlv---~nev~f~~~~~--f~~~~~k---l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~  208 (566)
T KOG2315|consen  137 ESLAARLV---SNEVQFYDLGS--FKTIQHK---LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ  208 (566)
T ss_pred             hhhhhhhh---cceEEEEecCC--ccceeee---eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc
Confidence            44333222   45677777663  1112222   244566666666652  223321      123455554410     


Q ss_pred             ----------------------------------------CCceeeEeecCCC--Cc-CCCCcceEEEEEcCCCCcEEEE
Q 014005          249 ----------------------------------------SDQCFNIVDMKPS--NM-DDLTEVITSAEFHPIYCNLLAY  285 (432)
Q Consensus       249 ----------------------------------------~~~~~~~~~~~~~--~~-~~~~~~v~~~~~~p~~~~~l~~  285 (432)
                                                              ..+.+..+.+...  .. ....++|.++.|+|++ +-|++
T Consensus       209 ~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~-~EF~V  287 (566)
T KOG2315|consen  209 PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSG-REFAV  287 (566)
T ss_pred             hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCC-CEEEE
Confidence                                                    0001111111000  00 1235789999999999 55554


Q ss_pred             --EeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-e-eC--CeEEEEec---C
Q 014005          286 --SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-R-DY--MNLKVFRY---E  356 (432)
Q Consensus       286 --~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~-~~--~~i~iwd~---~  356 (432)
                        |-.-..+.|||++ +..    +..|.               .++-+.+-|+|.|++|+. | +.  |.+.|||+   +
T Consensus       288 vyGfMPAkvtifnlr-~~~----v~df~---------------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K  347 (566)
T KOG2315|consen  288 VYGFMPAKVTIFNLR-GKP----VFDFP---------------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK  347 (566)
T ss_pred             EEecccceEEEEcCC-CCE----eEeCC---------------CCCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence              4466789999998 443    34443               367889999999999876 3 33  99999999   5


Q ss_pred             cceeEeecceeeeehhhhhcccccccccceeeEEEEeec----ccceeeeec
Q 014005          357 PVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTL----YLINLSALS  404 (432)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~i~~~~  404 (432)
                      .+..+.....           .+|.-..+...++.+|.+    -|+.++||.
T Consensus       348 ~i~~~~a~~t-----------t~~eW~PdGe~flTATTaPRlrvdNg~Kiwh  388 (566)
T KOG2315|consen  348 LIAKFKAANT-----------TVFEWSPDGEYFLTATTAPRLRVDNGIKIWH  388 (566)
T ss_pred             hccccccCCc-----------eEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence            5555544332           333322333444445544    378899998

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.28  E-value=9.1e-10  Score=93.40  Aligned_cols=204  Identities=10%  Similarity=0.150  Sum_probs=141.5

Q ss_pred             CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      -..+++++.+.++-..|..|-..|++.-+.+...-.                       ...+.+.+..|.         
T Consensus        67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-----------------------km~~~r~~~~h~---------  114 (404)
T KOG1409|consen   67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-----------------------KMTFLKDYLAHQ---------  114 (404)
T ss_pred             CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-----------------------hcchhhhhhhhh---------
Confidence            366899999999999999999999998887654221                       122335667788         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                         ..|..+-|  +-..+++++.+.|..+.---.+.+.  .+..+...            ..-.+..+  +-.+...|..
T Consensus       115 ---~~v~~~if--~~~~e~V~s~~~dk~~~~hc~e~~~--~lg~Y~~~------------~~~t~~~~--d~~~~fvGd~  173 (404)
T KOG1409|consen  115 ---ARVSAIVF--SLTHEWVLSTGKDKQFAWHCTESGN--RLGGYNFE------------TPASALQF--DALYAFVGDH  173 (404)
T ss_pred             ---cceeeEEe--cCCceeEEEeccccceEEEeeccCC--cccceEee------------ccCCCCce--eeEEEEeccc
Confidence               89999999  6677899999999877655555444  11111100            01111111  1113334443


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                        .+.+.+-.+... .-..+..+ .+|.+.+.+++|.+....+.+| .|..+.+||+.........       ..+|...
T Consensus       174 --~gqvt~lr~~~~-~~~~i~~~-~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e-------l~gh~~k  242 (404)
T KOG1409|consen  174 --SGQITMLKLEQN-GCQLITTF-NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE-------LQGHNDK  242 (404)
T ss_pred             --ccceEEEEEeec-CCceEEEE-cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee-------eccchhh
Confidence              455555554422 33455566 8999999999999999999999 9999999999822222222       3789999


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~  299 (432)
                      |..+..-+.- +.+.+++.||.|-+||+.-
T Consensus       243 V~~l~~~~~t-~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  243 VQALSYAQHT-RQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hhhhhhhhhh-eeeeeccCCCeEEEEeccc
Confidence            9999888877 8899999999999999874

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=1.9e-09  Score=100.91  Aligned_cols=223  Identities=10%  Similarity=0.056  Sum_probs=130.3

Q ss_pred             CCcEEEEEEcCCCCEE---EEecccc--eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           32 VDIVSAIEFDKTGDYL---AVGDRGG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l---~t~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      ...+..-.|+|||+.+   .+...+|  .|.+.++.+++..                         .+..+.        
T Consensus       184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-------------------------~lt~~~--------  230 (428)
T PRK01029        184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-------------------------KILALQ--------  230 (428)
T ss_pred             CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-------------------------EeecCC--------
Confidence            4456778999999752   2444444  4666677766421                         222232        


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeC-----CCeEEEEEccCc---ceeeeeecCCCCccccccccccccccccccC
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTN-----DKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAEKNFMNEHN  178 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~-----d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  178 (432)
                             +.....+|  +|||+.|+..+.     +..+.+|++..+   ....+...  ..           +......|
T Consensus       231 -------g~~~~p~w--SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~--~~-----------~~~~~p~w  288 (428)
T PRK01029        231 -------GNQLMPTF--SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE--AF-----------GTQGNPSF  288 (428)
T ss_pred             -------CCccceEE--CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC--CC-----------CCcCCeEE
Confidence                   33456789  899998887653     223445776643   22222211  00           23356789


Q ss_pred             CCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cC--CeEEEEeCCCCCceee
Q 014005          179 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD--LRINLWNLEISDQCFN  254 (432)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d--~~i~lwd~~~~~~~~~  254 (432)
                      +|++..++..+.. ++...+|.+.....+...+.+ ..+...+....|+|||+.++..  .+  ..|.+||+. +++...
T Consensus       289 SPDG~~Laf~s~~-~g~~~ly~~~~~~~g~~~~~l-t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~-~g~~~~  365 (428)
T PRK01029        289 SPDGTRLVFVSNK-DGRPRIYIMQIDPEGQSPRLL-TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLA-TGRDYQ  365 (428)
T ss_pred             CCCCCEEEEEECC-CCCceEEEEECcccccceEEe-ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECC-CCCeEE
Confidence            9999987765431 454555554321112223333 3344567789999999988865  33  468999998 444332


Q ss_pred             EeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe-C--CCeEEEEEccccccccccceeecccccccCCccceeeeeccee
Q 014005          255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-S--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (432)
Q Consensus       255 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~  331 (432)
                       +       ......+....|+||| +.|+... .  ...|.++|+..++.    ......              .+.+.
T Consensus       366 -L-------t~~~~~~~~p~wSpDG-~~L~f~~~~~g~~~L~~vdl~~g~~----~~Lt~~--------------~g~~~  418 (428)
T PRK01029        366 -L-------TTSPENKESPSWAIDS-LHLVYSAGNSNESELYLISLITKKT----RKIVIG--------------SGEKR  418 (428)
T ss_pred             -c-------cCCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCE----EEeecC--------------CCccc
Confidence             2       2222346778999999 7666443 2  34688889887654    222222              34566


Q ss_pred             EEEEcCCC
Q 014005          332 DIKFANDG  339 (432)
Q Consensus       332 ~~~~s~dg  339 (432)
                      ..+|+|-.
T Consensus       419 ~p~Ws~~~  426 (428)
T PRK01029        419 FPSWGAFP  426 (428)
T ss_pred             CceecCCC
Confidence            78888753

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=1.7e-10  Score=106.73  Aligned_cols=271  Identities=13%  Similarity=0.128  Sum_probs=179.7

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .......|++|+....|+|+|+.||.+++..+.+.....+    .+.+.        -.-+...-+++.||+        
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~----~~gla--------a~snLsmNQtLeGH~--------   71 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLN----KSGLA--------AASNLSMNQTLEGHN--------   71 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCccc----ccccc--------cccccchhhhhccCc--------
Confidence            3455789999999999999999999999999876542110    00000        001334447899999        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                          ..|.-+.|  +.+.+.|-++..+|.|.+|-+-.+.+-.-...+..           .+.|.++.|+.+|..+....
T Consensus        72 ----~sV~vvTW--Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRn-----------KSvV~SmsWn~dG~kIcIvY  134 (1189)
T KOG2041|consen   72 ----ASVMVVTW--NENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRN-----------KSVVVSMSWNLDGTKICIVY  134 (1189)
T ss_pred             ----ceEEEEEe--ccccccccccCCCceEEEEeeecccHHHHHhhCcC-----------ccEEEEEEEcCCCcEEEEEE
Confidence                99999999  78888999999999999999987763221112222           26788999999999988877


Q ss_pred             eeccceEEEEeeccccc-ceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCC-----CC
Q 014005          190 WTENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP-----SN  262 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~-----~~  262 (432)
                      .  ||.|.+-.++.+.. ++.+      .......+.|++|.+.++.+ .+|.+.++|.+ .+-.. .+.+..     ..
T Consensus       135 e--DGavIVGsvdGNRIwgKeL------kg~~l~hv~ws~D~~~~Lf~~ange~hlydnq-gnF~~-Kl~~~c~Vn~tg~  204 (1189)
T KOG2041|consen  135 E--DGAVIVGSVDGNRIWGKEL------KGQLLAHVLWSEDLEQALFKKANGETHLYDNQ-GNFER-KLEKDCEVNGTGI  204 (1189)
T ss_pred             c--cCCEEEEeeccceecchhc------chheccceeecccHHHHHhhhcCCcEEEeccc-ccHHH-hhhhceEEeeeee
Confidence            7  88887776653211 1111      11234478899999999999 99999999987 22110 000000     00


Q ss_pred             cCCCCcceEEEEEc--------CCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEE
Q 014005          263 MDDLTEVITSAEFH--------PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  334 (432)
Q Consensus       263 ~~~~~~~v~~~~~~--------p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~  334 (432)
                      +......|-.+.|.        |+- ..|+.+-.+|.+.|..-.....    ...+..              .-.+.+..
T Consensus       205 ~s~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~~----Pvv~dt--------------gm~~vgak  265 (1189)
T KOG2041|consen  205 FSNFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDPE----PVVVDT--------------GMKIVGAK  265 (1189)
T ss_pred             ecCCCccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCCC----CeEEec--------------ccEeecce
Confidence            01111224555553        465 7899999999988865443332    122222              24688999


Q ss_pred             EcCCCCEEEEee---------C-CeEEEEec--CcceeEeecce
Q 014005          335 FANDGQHLLSRD---------Y-MNLKVFRY--EPVMTLSFCGI  366 (432)
Q Consensus       335 ~s~dg~~l~s~~---------~-~~i~iwd~--~~~~~~~~~~~  366 (432)
                      |+++|..||.++         | +.|.++..  ..+.+++.++.
T Consensus       266 Wnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~  309 (1189)
T KOG2041|consen  266 WNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGS  309 (1189)
T ss_pred             ecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCc
Confidence            999999998742         2 57888887  56666666553

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=2.2e-09  Score=96.79  Aligned_cols=233  Identities=11%  Similarity=0.116  Sum_probs=148.5

Q ss_pred             EEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcc
Q 014005           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (432)
Q Consensus        36 ~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (432)
                      +++.|++|..+.|- -..+.+.+|+..+.+..                            .-.-|.            ..
T Consensus       129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~----------------------------~~kl~~------------~~  167 (566)
T KOG2315|consen  129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI----------------------------QHKLSV------------SG  167 (566)
T ss_pred             cccccccchhhhhh-hhcceEEEEecCCccce----------------------------eeeeec------------cc
Confidence            68899988775433 23357999998774321                            122244            77


Q ss_pred             eeEEEEEEcCCCCEEEEE-----eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          116 INRVRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       116 v~~l~~~~s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                      |..+.++|.|....+|+=     +.-..|++|...............         +. ...-..+.|++-+.-+.....
T Consensus       168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ks---------FF-kadkvqm~WN~~gt~LLvLas  237 (566)
T KOG2315|consen  168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKS---------FF-KADKVQMKWNKLGTALLVLAS  237 (566)
T ss_pred             eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcc---------cc-ccceeEEEeccCCceEEEEEE
Confidence            888999555455566652     445689999876322111110000         00 011223556655543322221


Q ss_pred             e-c---------cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE--E-cCCeEEEEeCCCCCceeeEee
Q 014005          191 T-E---------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVD  257 (432)
Q Consensus       191 ~-~---------~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~-~d~~i~lwd~~~~~~~~~~~~  257 (432)
                      + .         ...+.+.+++   ...+.-.  ....++|.++.|+|+++.+++  | .-..+.++|++  +..+..+ 
T Consensus       238 tdVDktn~SYYGEq~Lyll~t~---g~s~~V~--L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df-  309 (566)
T KOG2315|consen  238 TDVDKTNASYYGEQTLYLLATQ---GESVSVP--LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDF-  309 (566)
T ss_pred             EeecCCCccccccceEEEEEec---CceEEEe--cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeC-
Confidence            1 1         2367777766   2233222  345789999999999988775  5 78899999999  4444422 


Q ss_pred             cCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC---CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEE
Q 014005          258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  334 (432)
Q Consensus       258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~  334 (432)
                              -.++=+++-|+|.| ++++.+|.+   |.|.+||..+.+.    +..+..               ..-+-..
T Consensus       310 --------~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~----i~~~~a---------------~~tt~~e  361 (566)
T KOG2315|consen  310 --------PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKL----IAKFKA---------------ANTTVFE  361 (566)
T ss_pred             --------CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchhh----cccccc---------------CCceEEE
Confidence                    33455789999999 888888754   7899999998665    455655               4556789


Q ss_pred             EcCCCCEEEEee-------CCeEEEEec
Q 014005          335 FANDGQHLLSRD-------YMNLKVFRY  355 (432)
Q Consensus       335 ~s~dg~~l~s~~-------~~~i~iwd~  355 (432)
                      |+|||++++++.       |+.++||+.
T Consensus       362 W~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  362 WSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             EcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            999999998852       478999999

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.23  E-value=1e-09  Score=93.05  Aligned_cols=296  Identities=10%  Similarity=0.110  Sum_probs=170.3

Q ss_pred             cCCCcEEEEEEcCCCC--EEEEecccceEEEEEecCCcCCCC-----ccccchhhhcccccccccc---CCcceeeee-e
Q 014005           30 QDVDIVSAIEFDKTGD--YLAVGDRGGRVILFETVGGKNTPN-----QHISRSELEKQMDFTSTSH---PEYRYKTEF-Q   98 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~--~l~t~~~dg~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---p~~~~~~~~-~   98 (432)
                      .-...|..+.|.++++  .++....|.+|++|.+......+.     .+.....+....-.++..+   .+..+.+.+ .
T Consensus        82 eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aN  161 (433)
T KOG1354|consen   82 EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYAN  161 (433)
T ss_pred             hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccc
Confidence            3456799999998775  456667899999999876543210     0000000000000000001   133344444 3


Q ss_pred             cCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc-ceeeeeecCCCCcccccccccccccccccc
Q 014005           99 SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEH  177 (432)
Q Consensus        99 ~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  177 (432)
                      +|+            .-|++|++  +.|++.++++. |=.|.+|+++-. +.-.+.....+.      -..-..-|++..
T Consensus       162 aHt------------yhiNSIS~--NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~n------mEeLteVITsaE  220 (433)
T KOG1354|consen  162 AHT------------YHINSISV--NSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPAN------MEELTEVITSAE  220 (433)
T ss_pred             cce------------eEeeeeee--cCccceEeecc-ceeeeeccccccCCceeEEEccccC------HHHHHHHHhhhc
Confidence            566            88999999  88998888875 678999998632 211221111110      001124577788


Q ss_pred             CCCCCccee-cceeeccceEEEEeecccccc-eeeEEe-----------ecCCCCCeeEEEeCCCCCEEEEEcCCeEEEE
Q 014005          178 NPPSFAHGY-HLEWTENMATKIANVGNSVHA-RCQKVY-----------PHAHDFNINSISNNSDCETFVSADDLRINLW  244 (432)
Q Consensus       178 ~~~~~~~~~-~~~~~~~~~v~i~d~~~~~~~-~~~~~~-----------~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lw  244 (432)
                      |+|....+. -.+.  .|+|++.|++...-. ...+.+           ..+--..|..+.|+++|+++++-+--+|++|
T Consensus       221 Fhp~~cn~f~YSSS--KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~w  298 (433)
T KOG1354|consen  221 FHPHHCNVFVYSSS--KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLW  298 (433)
T ss_pred             cCHhHccEEEEecC--CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEE
Confidence            888754333 2333  799999999842100 000111           0222356889999999999998877899999


Q ss_pred             eCCCCCceeeEeecCCCC------cCCC--CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccc--c
Q 014005          245 NLEISDQCFNIVDMKPSN------MDDL--TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA--A  314 (432)
Q Consensus       245 d~~~~~~~~~~~~~~~~~------~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h--~  314 (432)
                      |+....+++.++++...-      +-..  --.-..++|+-++ ..+++|+..+.+++++...|..     +.+..+  .
T Consensus       299 D~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~gsk-----~d~tl~asr  372 (433)
T KOG1354|consen  299 DLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFNLARGSK-----EDFTLEASR  372 (433)
T ss_pred             eccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc-ceEecccccceEEEecCCCCcc-----eeecccccc
Confidence            998677777766321110      0000  0123467899888 8999999999999999765543     222211  0


Q ss_pred             cc--cCCc----c--------------ceeeeecceeEEEEcCCCCEEEEeeCCeEEEEe
Q 014005          315 ES--HGSK----S--------------FFTEIIASISDIKFANDGQHLLSRDYMNLKVFR  354 (432)
Q Consensus       315 ~~--~~~~----~--------------~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd  354 (432)
                      ..  +...    .              ..-+....+...+|+|....+|.+..+.+++|.
T Consensus       373 ~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnnlyif~  432 (433)
T KOG1354|consen  373 KNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNNLYIFQ  432 (433)
T ss_pred             cCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCceEEec
Confidence            00  0000    0              000112245566889988888887667777763

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.23  E-value=5.1e-10  Score=107.79  Aligned_cols=114  Identities=16%  Similarity=0.150  Sum_probs=95.7

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEE
Q 014005          215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  293 (432)
Q Consensus       215 ~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~  293 (432)
                      .+|.+.|.++.++.+|+++++. +|.++++|+++. .+...      ...-+|+..|+.++|+|+   .+++++.|.+.+
T Consensus       172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s-~~~~~------~~~fgHsaRvw~~~~~~n---~i~t~gedctcr  241 (967)
T KOG0974|consen  172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS-REVLG------CTGFGHSARVWACCFLPN---RIITVGEDCTCR  241 (967)
T ss_pred             cccCCceEEEEEccCCcEEEEEecCcceeeeeccc-ccccC------cccccccceeEEEEeccc---eeEEeccceEEE
Confidence            6999999999999999999999 999999999993 33322      123689999999999986   699999999999


Q ss_pred             EEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                      +|+... ..    +..+.+|            ....++.++..++...++++ .|+.+++||+
T Consensus       242 vW~~~~-~~----l~~y~~h------------~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  242 VWGVNG-TQ----LEVYDEH------------SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             EEeccc-ce----ehhhhhh------------hhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence            997663 33    4677777            35689999999998888886 6699999999

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=1.3e-09  Score=98.42  Aligned_cols=164  Identities=9%  Similarity=0.136  Sum_probs=114.6

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      +.++++..  ++-..+|++|+.+|.|..||.+............+              |                    
T Consensus       176 ~~lN~v~i--n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~--------------v--------------------  219 (703)
T KOG2321|consen  176 GELNVVSI--NEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS--------------V--------------------  219 (703)
T ss_pred             ccceeeee--cCccceEEecccCceEEEecchhhhhheeeecccc--------------c--------------------
Confidence            78999999  67778999999999999999987652222111100              0                    


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (432)
                                  ...+   . ......|+++.|+.+|-.+++| .+|.+.+||++ ..+++.+-      -.+..-+|..
T Consensus       220 ------------~s~p---g-~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR-a~~pl~~k------dh~~e~pi~~  276 (703)
T KOG2321|consen  220 ------------NSHP---G-GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR-ASKPLLVK------DHGYELPIKK  276 (703)
T ss_pred             ------------CCCc---c-ccccCcceEEEecCCceeEEeeccCCcEEEEEcc-cCCceeec------ccCCccceee
Confidence                        0000   0 1122359999999999999999 99999999999 55554431      1334457899


Q ss_pred             EEEcCCCC-cEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeE
Q 014005          273 AEFHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  350 (432)
Q Consensus       273 ~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i  350 (432)
                      +.|.+.+. +.+++. ....++|||-.+|+.    ...++.              ...++.+++-|++-+++++.+ ..+
T Consensus       277 l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~----~asiEp--------------t~~lND~C~~p~sGm~f~Ane~~~m  337 (703)
T KOG2321|consen  277 LDWQDTDQQNKVVSM-DKRILKIWDECTGKP----MASIEP--------------TSDLNDFCFVPGSGMFFTANESSKM  337 (703)
T ss_pred             ecccccCCCceEEec-chHHhhhcccccCCc----eeeccc--------------cCCcCceeeecCCceEEEecCCCcc
Confidence            99977632 445443 456899999999886    455555              467999999999888888755 555


Q ss_pred             EEEec
Q 014005          351 KVFRY  355 (432)
Q Consensus       351 ~iwd~  355 (432)
                      ..|=+
T Consensus       338 ~~yyi  342 (703)
T KOG2321|consen  338 HTYYI  342 (703)
T ss_pred             eeEEc
Confidence            55544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.15  E-value=3.6e-10  Score=114.34  Aligned_cols=184  Identities=13%  Similarity=0.184  Sum_probs=138.4

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      ..|.++.=  +|...+.+||+.||.|++|....++........            .+..+..+.|+.+|.....+..  |
T Consensus      2209 ~~v~r~~s--Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~------------g~s~vtr~~f~~qGnk~~i~d~--d 2272 (2439)
T KOG1064|consen 2209 ENVRRMTS--HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA------------GNSRVTRSRFNHQGNKFGIVDG--D 2272 (2439)
T ss_pred             CceeeecC--CCCCceEEecCCCceEEEEeccCCCeEEEeecc------------CcchhhhhhhcccCCceeeecc--C
Confidence            45666666  677889999999999999999877633332221            1267889999999888877777  9


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE----cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                      |.+.+|...    .++.... ..|......++|-.  ..++++    +++.+.+||.........+       ...|.+.
T Consensus      2273 g~l~l~q~~----pk~~~s~-qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-------~~~H~~g 2338 (2439)
T KOG1064|consen 2273 GDLSLWQAS----PKPYTSW-QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-------HTCHDGG 2338 (2439)
T ss_pred             CceeecccC----Ccceecc-ccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee-------eeecCCC
Confidence            999999986    3444455 67888888888876  445543    4789999998743332221       1689999


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-C
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M  348 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~  348 (432)
                      ++++++-|.. ++|++|+.+|.|++||++..++    ...++.                      +. ...++++|+. |
T Consensus      2339 aT~l~~~P~~-qllisggr~G~v~l~D~rqrql----~h~~~~----------------------~~-~~~~f~~~ss~g 2390 (2439)
T KOG1064|consen 2339 ATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQL----RHTFQA----------------------LD-TREYFVTGSSEG 2390 (2439)
T ss_pred             ceEEEEcCcc-eEEEecCCcCcEEEeehHHHHH----HHHhhh----------------------hh-hhheeeccCccc
Confidence            9999999999 9999999999999999997664    232221                      33 4568888865 9


Q ss_pred             eEEEEec
Q 014005          349 NLKVFRY  355 (432)
Q Consensus       349 ~i~iwd~  355 (432)
                      .++||++
T Consensus      2391 ~ikIw~~ 2397 (2439)
T KOG1064|consen 2391 NIKIWRL 2397 (2439)
T ss_pred             ceEEEEc
Confidence            9999999

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.15  E-value=1.3e-08  Score=83.72  Aligned_cols=199  Identities=13%  Similarity=0.027  Sum_probs=133.4

Q ss_pred             EEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccce
Q 014005          129 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR  208 (432)
Q Consensus       129 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~  208 (432)
                      .+..++.|.++++.++..+..+.....+             +-.+..+++++++.+++..+.  ...|-.|.+... ...
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~-------------~~~~ns~~~snd~~~~~~Vgd--s~~Vf~y~id~~-sey  193 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQ-------------NLTQNSLHYSNDPSWGSSVGD--SRRVFRYAIDDE-SEY  193 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeecc-------------ccceeeeEEcCCCceEEEecC--CCcceEEEeCCc-cce
Confidence            4777889999999999876544332221             123678899999999998887  778888887754 233


Q ss_pred             eeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCC-cEEEEE
Q 014005          209 CQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-NLLAYS  286 (432)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~  286 (432)
                      .+++......+.=.+..|+.....+|++ .||++.+||++....+....   ..+...|.+.++.+.|+|.|. .+|+..
T Consensus       194 ~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~---sstrp~hnGa~R~c~Fsl~g~lDLLf~s  270 (344)
T KOG4532|consen  194 IENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI---SSTRPHHNGAFRVCRFSLYGLLDLLFIS  270 (344)
T ss_pred             eeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh---cccCCCCCCceEEEEecCCCcceEEEEe
Confidence            3333324455556688899999999999 99999999999555544332   223356899999999998764 456666


Q ss_pred             eCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       287 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                      -.-+.+.+.|+|+++.+.. +.....    .    ++......|..-.|+.++.-+.+.+.-.+.=|++
T Consensus       271 Ehfs~~hv~D~R~~~~~q~-I~i~~d----~----~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni  330 (344)
T KOG4532|consen  271 EHFSRVHVVDTRNYVNHQV-IVIPDD----V----ERKHNTQHIFGTNFNNENESNDVKNELQGAEYNI  330 (344)
T ss_pred             cCcceEEEEEcccCceeeE-EecCcc----c----cccccccccccccccCCCcccccccchhhheeec
Confidence            6678999999999876421 111111    0    0000123477788888877666655444555555

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.15  E-value=1e-07  Score=85.22  Aligned_cols=249  Identities=10%  Similarity=0.086  Sum_probs=136.2

Q ss_pred             EcCCCCEEEEecc----------cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecC-Cccccccc
Q 014005           40 FDKTGDYLAVGDR----------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFDYLK  108 (432)
Q Consensus        40 fsp~g~~l~t~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h-~~~~~~~~  108 (432)
                      +||+|+.|.++..          +..|.+||..+.+..                           ..+..- .|++.   
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~---------------------------~~i~~p~~p~~~---  102 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI---------------------------ADIELPEGPRFL---  102 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE---------------------------eEEccCCCchhh---
Confidence            8999998866654          679999999987643                           222210 00000   


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEe-C-CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILST-N-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                         ....-..+++  +|||+++++.. . +..|.+.|+.+++...........              .-... ....+.+
T Consensus       103 ---~~~~~~~~~l--s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~--------------~vy~t-~e~~~~~  162 (352)
T TIGR02658       103 ---VGTYPWMTSL--TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY--------------HIFPT-ANDTFFM  162 (352)
T ss_pred             ---ccCccceEEE--CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc--------------EEEEe-cCCccEE
Confidence               0022335677  89999988775 3 789999999998854432221100              00111 1111111


Q ss_pred             cceeeccceEEEEeeccccc--ceeeEEeecCCCCCeeE-EEeCC-CCCEEEEEcCCeEEEEeCCCC----CceeeEeec
Q 014005          187 HLEWTENMATKIANVGNSVH--ARCQKVYPHAHDFNINS-ISNNS-DCETFVSADDLRINLWNLEIS----DQCFNIVDM  258 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~--~~~~~~~~~~~~~~i~~-~~~~~-~~~~l~~~~d~~i~lwd~~~~----~~~~~~~~~  258 (432)
                      .+.   ||......+.....  ......+ ......+.. -.+.+ +|+.+.+...|+|.+.|+...    ...+..+..
T Consensus       163 ~~~---Dg~~~~v~~d~~g~~~~~~~~vf-~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~  238 (352)
T TIGR02658       163 HCR---DGSLAKVGYGTKGNPKIKPTEVF-HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTE  238 (352)
T ss_pred             Eee---cCceEEEEecCCCceEEeeeeee-cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccc
Confidence            111   33222222221101  0011111 110000000 03345 888888884499999997521    112222100


Q ss_pred             CCCCcCCCCcceEEEEEcCCCCcEEEEEe----------CCCeEEEEEccccccccccceeecccccccCCccceeeeec
Q 014005          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (432)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  328 (432)
                      ....-.-....+.-++++|++ +.+....          ..+.|.++|..+++.    +..+..              ..
T Consensus       239 ~~~~~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv----i~~i~v--------------G~  299 (352)
T TIGR02658       239 AEKADGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKR----LRKIEL--------------GH  299 (352)
T ss_pred             cccccccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeE----EEEEeC--------------CC
Confidence            000001123444559999999 6555532          225899999999886    455554              36


Q ss_pred             ceeEEEEcCCCC-EEEEe--eCCeEEEEec---CcceeE
Q 014005          329 SISDIKFANDGQ-HLLSR--DYMNLKVFRY---EPVMTL  361 (432)
Q Consensus       329 ~v~~~~~s~dg~-~l~s~--~~~~i~iwd~---~~~~~~  361 (432)
                      .+..++++|||+ +|.+.  ..+.|.+.|.   +.++++
T Consensus       300 ~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       300 EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            889999999999 77654  3489999999   566666

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.14  E-value=3.5e-10  Score=104.97  Aligned_cols=209  Identities=19%  Similarity=0.231  Sum_probs=141.5

Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                      .++.+++.+..+..  +|.|+-++.++.-| +.+.|+...-.....-+...+           ..+....|++....-.-
T Consensus        19 lsl~v~~~~~a~si--~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tp-----------w~vad~qws~h~a~~~w   84 (1081)
T KOG0309|consen   19 LSLKVDGGFNAVSI--NPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITP-----------WQVADVQWSPHPAKPYW   84 (1081)
T ss_pred             eEEEecCcccceee--ccccchhhhhhhcC-eEEEeccCCCCCceeeeccCc-----------chhcceecccCCCCcee
Confidence            34445578889999  78899999998877 555576543211111111222           56777788776543333


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCE-EEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      ........-.+|++...........+ .+|...|+.+-|+|+.+- +++. .|..+..||++.....+..+       ..
T Consensus        85 iVsts~qkaiiwnlA~ss~~aIef~l-hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-------~~  156 (1081)
T KOG0309|consen   85 IVSTSNQKAIIWNLAKSSSNAIEFVL-HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-------SS  156 (1081)
T ss_pred             EEecCcchhhhhhhhcCCccceEEEE-ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-------ec
Confidence            22222556668888765444444444 899999999999998654 5566 89999999999777777655       34


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC--CCEEE
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLL  343 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l~  343 (432)
                      -...-..++|+...+..+ +.+..+.|++||++.|..+   +..+++|             ...|..+.|..-  ++.+-
T Consensus       157 w~s~asqVkwnyk~p~vl-asshg~~i~vwd~r~gs~p---l~s~K~~-------------vs~vn~~~fnr~~~s~~~s  219 (1081)
T KOG0309|consen  157 WRSAASQVKWNYKDPNVL-ASSHGNDIFVWDLRKGSTP---LCSLKGH-------------VSSVNSIDFNRFKYSEIMS  219 (1081)
T ss_pred             ccccCceeeecccCcchh-hhccCCceEEEeccCCCcc---eEEeccc-------------ceeeehHHHhhhhhhhhcc
Confidence            445567899998774555 4566778999999988754   5677776             667777777653  44444


Q ss_pred             EeeCCeEEEEec
Q 014005          344 SRDYMNLKVFRY  355 (432)
Q Consensus       344 s~~~~~i~iwd~  355 (432)
                      +..|++|++||.
T Consensus       220 ~~~d~tvkfw~y  231 (1081)
T KOG0309|consen  220 SSNDGTVKFWDY  231 (1081)
T ss_pred             cCCCCceeeecc
Confidence            456688888887

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.13  E-value=8.4e-10  Score=106.34  Aligned_cols=148  Identities=14%  Similarity=0.255  Sum_probs=119.5

Q ss_pred             EEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeE
Q 014005           39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR  118 (432)
Q Consensus        39 ~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~  118 (432)
                      .++++.-++++|+.-+.|.+|+....+..                           ..+.||+            +.|.+
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p---------------------------~~l~GHe------------G~iF~  180 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHEDNKP---------------------------IRLKGHE------------GSIFS  180 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccccCCc---------------------------ceecccC------------CceEE
Confidence            34566668899999999999998743321                           2578999            99999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEE
Q 014005          119 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI  198 (432)
Q Consensus       119 l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i  198 (432)
                      +.|  +.||+++++.|.|+++++|++++.+....                                              
T Consensus       181 i~~--s~dg~~i~s~SdDRsiRlW~i~s~~~~~~----------------------------------------------  212 (967)
T KOG0974|consen  181 IVT--SLDGRYIASVSDDRSIRLWPIDSREVLGC----------------------------------------------  212 (967)
T ss_pred             EEE--ccCCcEEEEEecCcceeeeecccccccCc----------------------------------------------
Confidence            999  89999999999999999999998762110                                              


Q ss_pred             EeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC-cceEEEEEc
Q 014005          199 ANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVITSAEFH  276 (432)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~  276 (432)
                                  .-  -+|..++..+.+.|+  .++++ .|.++++|+.+  +..+..+       ..|. ..|+.++.+
T Consensus       213 ------------~~--fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y-------~~h~g~~iw~~~~~  267 (967)
T KOG0974|consen  213 ------------TG--FGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVY-------DEHSGKGIWKIAVP  267 (967)
T ss_pred             ------------cc--ccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhh-------hhhhhcceeEEEEc
Confidence                        00  478999999999998  77777 99999999877  4445444       5564 469999999


Q ss_pred             CCCCcEEEEEeCCCeEEEEEccc
Q 014005          277 PIYCNLLAYSSSRGFVRLVDMRQ  299 (432)
Q Consensus       277 p~~~~~l~~~~~dg~i~iwd~~~  299 (432)
                      +.. ...++++.|+.+++||+..
T Consensus       268 ~~~-~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  268 IGV-IIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             CCc-eEEEeeccCcchhhhhhhc
Confidence            988 8999999999999999874

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.11  E-value=6e-09  Score=86.69  Aligned_cols=207  Identities=12%  Similarity=0.121  Sum_probs=133.9

Q ss_pred             cceeEEEEEEc-CCCC-EEEEEeCCCeEEEEEccCccee-eeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          114 EKINRVRWCAA-PNGS-MFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       114 ~~v~~l~~~~s-~~~~-~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                      ..+..+.|+.- .+|. .++-+..+|.|.++........ .+..+....        .......++.|++.+..++.+..
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k--------i~~~~~lslD~~~~~~~i~vs~s  141 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK--------ISVVEALSLDISTSGTKIFVSDS  141 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhh--------hhheeeeEEEeeccCceEEEEcC
Confidence            45667777532 2344 4566777899999987544311 121111111        00012345667777777766665


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                        +|.+.+-+.... .-+..+.+ +.|...+....|+.... .+.+| +|+.+..||++.++..+..      ...-|..
T Consensus       142 --~G~~~~v~~t~~-~le~vq~w-k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~------n~kvH~~  211 (339)
T KOG0280|consen  142 --RGSISGVYETEM-VLEKVQTW-KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH------NSKVHTS  211 (339)
T ss_pred             --CCcEEEEeccee-eeeecccc-cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee------cceeeec
Confidence              666664443311 11222355 78999999999987654 55688 9999999999966654432      2367888


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC--CCEEEEee
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSRD  346 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l~s~~  346 (432)
                      .|.++.-+|..+.++++|+.|-.|++||.|....     ..+.+ +           ..+.|+.+.++|.  ++.|+++-
T Consensus       212 GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k-----Pl~~~-~-----------v~GGVWRi~~~p~~~~~lL~~CM  274 (339)
T KOG0280|consen  212 GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK-----PLFKA-K-----------VGGGVWRIKHHPEIFHRLLAACM  274 (339)
T ss_pred             ceEEEecCCCCCceEEEeccccceeeeehhcccC-----ccccC-c-----------cccceEEEEecchhhhHHHHHHH
Confidence            9999999987779999999999999999996443     22222 1           1478999999996  45566665


Q ss_pred             CCeEEEEec
Q 014005          347 YMNLKVFRY  355 (432)
Q Consensus       347 ~~~i~iwd~  355 (432)
                      .+-.+|-++
T Consensus       275 h~G~ki~~~  283 (339)
T KOG0280|consen  275 HNGAKILDS  283 (339)
T ss_pred             hcCceEEEe
Confidence            555666666

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.10  E-value=6.4e-08  Score=85.91  Aligned_cols=118  Identities=11%  Similarity=0.130  Sum_probs=91.4

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCC-eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDK-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      ..|.-..+  ..+++-++.|..|| .+-++|..+++.+++..--              +.|.++..++++++++.+..  
T Consensus       360 ~~VrY~r~--~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l--------------g~I~av~vs~dGK~~vvaNd--  421 (668)
T COG4946         360 GGVRYRRI--QVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL--------------GNIEAVKVSPDGKKVVVAND--  421 (668)
T ss_pred             CceEEEEE--ccCCcceEEeccCCceEEEEecCCceEEEeeCCc--------------cceEEEEEcCCCcEEEEEcC--
Confidence            66777777  56777899999999 9999999999876654332              78999999999999988876  


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC----CeEEEEeCCCCCceee
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFN  254 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d----~~i~lwd~~~~~~~~~  254 (432)
                      ...+-+.|++   ++.....- +...+-|+.++|+|+++++|-+ -+    ..|+++|+. +++...
T Consensus       422 r~el~vidid---ngnv~~id-kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~-~~Kiy~  483 (668)
T COG4946         422 RFELWVIDID---NGNVRLID-KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD-GGKIYD  483 (668)
T ss_pred             ceEEEEEEec---CCCeeEec-ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC-CCeEEE
Confidence            6677777887   44443333 5567789999999999999987 54    478999998 444443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.09  E-value=4e-09  Score=87.74  Aligned_cols=200  Identities=12%  Similarity=0.124  Sum_probs=133.2

Q ss_pred             EEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhc
Q 014005           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (432)
Q Consensus        35 V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  114 (432)
                      -.++.|++.|..++++..+|.+.+-+.....                         .+..+.++.|+            -
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-------------------------le~vq~wk~He------------~  166 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMV-------------------------LEKVQTWKVHE------------F  166 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceee-------------------------eeecccccccc------------e
Confidence            3567788888888888888888855544432                         22335788898            7


Q ss_pred             ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  194 (432)
                      ..+..+|. ..+.+.+.+|+.|+.+..||++..+ +.                                           
T Consensus       167 E~Wta~f~-~~~pnlvytGgDD~~l~~~D~R~p~-~~-------------------------------------------  201 (339)
T KOG0280|consen  167 EAWTAKFS-DKEPNLVYTGGDDGSLSCWDIRIPK-TF-------------------------------------------  201 (339)
T ss_pred             eeeeeecc-cCCCceEEecCCCceEEEEEecCCc-ce-------------------------------------------
Confidence            78888884 3455789999999999999998332 11                                           


Q ss_pred             eEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (432)
Q Consensus       195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (432)
                         +|.-.            .-|...|.+|.-+| .+.++++| .|..|++||.++.++++..        ....+.|+.
T Consensus       202 ---i~~n~------------kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~--------~~v~GGVWR  258 (339)
T KOG0280|consen  202 ---IWHNS------------KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK--------AKVGGGVWR  258 (339)
T ss_pred             ---eeecc------------eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc--------CccccceEE
Confidence               22111            45777888887776 57789999 9999999999977776652        344578999


Q ss_pred             EEEcCCCC-cEEEEEeCCCeEEEEEccccccccc-cceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC--C
Q 014005          273 AEFHPIYC-NLLAYSSSRGFVRLVDMRQSALCDH-SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M  348 (432)
Q Consensus       273 ~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~--~  348 (432)
                      +..+|.-. .+|+++-.+ -.+|-++..+....+ .....+.|             .+-+..-.|.....+||+++-  +
T Consensus       259 i~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~e~~~~~~s~~~h-------------dSl~YG~DWd~~~~~lATCsFYDk  324 (339)
T KOG0280|consen  259 IKHHPEIFHRLLAACMHN-GAKILDSSDKVLEFQIVLPSDKIH-------------DSLCYGGDWDSKDSFLATCSFYDK  324 (339)
T ss_pred             EEecchhhhHHHHHHHhc-CceEEEecccccchheeeeccccc-------------cceeeccccccccceeeeeecccc
Confidence            99999752 334444444 467777775442100 12223333             556666667544557888642  4


Q ss_pred             eEE-EE
Q 014005          349 NLK-VF  353 (432)
Q Consensus       349 ~i~-iw  353 (432)
                      .++ +|
T Consensus       325 ~~~~~W  330 (339)
T KOG0280|consen  325 KIRQLW  330 (339)
T ss_pred             ceeeee
Confidence            433 55

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.06  E-value=1.9e-09  Score=88.09  Aligned_cols=202  Identities=10%  Similarity=0.021  Sum_probs=114.7

Q ss_pred             CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee---eccceEEEEeec
Q 014005          126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW---TENMATKIANVG  202 (432)
Q Consensus       126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~v~i~d~~  202 (432)
                      -+..++++..||.+.+++.+.-. ..........           ..-.+......+.++.++..   .+-+..+.|+++
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~-~~~~~i~~~~-----------~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~  167 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDL-ALMSRIPSIH-----------SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLD  167 (319)
T ss_pred             cCCceEecCCCceEEEEechHHH-hhhhhccccc-----------ccccccceeecccEEecCCcceEeeccceeeeccc
Confidence            35678999999999999876421 1000000000           11112223334444544432   123456666665


Q ss_pred             ccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCC
Q 014005          203 NSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  280 (432)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  280 (432)
                      ..   +....- ......+.+++-+|..+ .+++| +||.+.+||.+.-..+..       .+..|...++.+-|+|..+
T Consensus       168 p~---~t~~~~-~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S-------~l~ahk~~i~eV~FHpk~p  236 (319)
T KOG4714|consen  168 PI---KTLIPS-KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS-------LLKAHKAEIWEVHFHPKNP  236 (319)
T ss_pred             cc---cccccc-ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH-------HHHHhhhhhhheeccCCCc
Confidence            21   111111 12233499999999655 45577 999999999994322333       2478999999999999988


Q ss_pred             cEEEEEeCCCeEEEEEccccccccccceeecccccc----cC-----CccceeeeecceeEEEEcCCCCEEEEeeC-CeE
Q 014005          281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES----HG-----SKSFFTEIIASISDIKFANDGQHLLSRDY-MNL  350 (432)
Q Consensus       281 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~----~~-----~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i  350 (432)
                      ..|+++++||.+..||..+.-+.-  -..-..|...    +.     ....++.....|+++..  -|..|++|+| +.|
T Consensus       237 ~~Lft~sedGslw~wdas~~~l~i--~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaI  312 (319)
T KOG4714|consen  237 EHLFTCSEDGSLWHWDASTTFLSI--SNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAI  312 (319)
T ss_pred             hheeEecCCCcEEEEcCCCceEEe--cCccccccccccCCcccceEeeeccccccceeeeeeec--cCceEEeccccceE
Confidence            999999999999999977421100  0000111000    00     00122222334444333  3778999877 888


Q ss_pred             EEEe
Q 014005          351 KVFR  354 (432)
Q Consensus       351 ~iwd  354 (432)
                      ++.+
T Consensus       313 yl~~  316 (319)
T KOG4714|consen  313 YLTR  316 (319)
T ss_pred             EEec
Confidence            8875

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.06  E-value=6.4e-08  Score=86.64  Aligned_cols=234  Identities=12%  Similarity=0.183  Sum_probs=145.2

Q ss_pred             cEEEEEEcCCCCEEEEecccc---------------eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee
Q 014005           34 IVSAIEFDKTGDYLAVGDRGG---------------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ   98 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~   98 (432)
                      .|.-+.|+|.++||.+=+..+               .+.+||+.++..+                           ..+.
T Consensus        73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv---------------------------~sf~  125 (561)
T COG5354          73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIV---------------------------FSFN  125 (561)
T ss_pred             CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeE---------------------------eecc
Confidence            578899999999999865433               4889998887643                           3343


Q ss_pred             cCCccccccchhhhhcc--ee-EEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccccc
Q 014005           99 SHEPEFDYLKSLEIEEK--IN-RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (432)
Q Consensus        99 ~h~~~~~~~~~~~~~~~--v~-~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  175 (432)
                      +..            .+  .+ -+.|  +-+..+.|-- -...+.++++ ++............           ..+..
T Consensus       126 ~~~------------q~~~~Wp~~k~--s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~-----------~gi~d  178 (561)
T COG5354         126 GIS------------QPYLGWPVLKF--SIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRP-----------VGILD  178 (561)
T ss_pred             ccC------------Ccccccceeee--eecchhhhhh-ccCeEEEEec-CCccccCchhhccc-----------cceee
Confidence            332            22  33 5677  5666665544 2356899997 44433222222222           56777


Q ss_pred             ccCCCCCcceecceee-----ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-----------C
Q 014005          176 EHNPPSFAHGYHLEWT-----ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-----------D  238 (432)
Q Consensus       176 ~~~~~~~~~~~~~~~~-----~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-----------d  238 (432)
                      ..++|.+..-..+...     ..+.+++|.+...........+ .   -.=..+.|++.|+++++- .           .
T Consensus       179 FsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf-k---~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfge  254 (561)
T COG5354         179 FSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF-K---VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGE  254 (561)
T ss_pred             EEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE-e---ecccEEEEecCCceEEEEEEEeeecccceecc
Confidence            8888875333322222     2568889988733222222222 1   122367899999887742 1           3


Q ss_pred             CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEE--eCCCeEEEEEccccccccccceeecccccc
Q 014005          239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS--SSRGFVRLVDMRQSALCDHSARILRDAAES  316 (432)
Q Consensus       239 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~  316 (432)
                      ..++|++++  +..+..-       ....++|...+|.|.+ +.|++.  -.+..+.++|++.. +    ...+.     
T Consensus       255 snLyl~~~~--e~~i~V~-------~~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~~lr~N-l----~~~~P-----  314 (561)
T COG5354         255 SNLYLLRIT--ERSIPVE-------KDLKDPVHDFTWEPLS-SRFAVISGYMPASVSVFDLRGN-L----RFYFP-----  314 (561)
T ss_pred             ceEEEEeec--cccccee-------ccccccceeeeecccC-CceeEEecccccceeecccccc-e----EEecC-----
Confidence            457777777  3333321       2557889999999998 555554  47889999999954 3    22222     


Q ss_pred             cCCccceeeeecceeEEEEcCCCCEEEE-e-eC--CeEEEEec
Q 014005          317 HGSKSFFTEIIASISDIKFANDGQHLLS-R-DY--MNLKVFRY  355 (432)
Q Consensus       317 ~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~-~~--~~i~iwd~  355 (432)
                                ...=+.+.|||.++|++. | +.  |.+-+||.
T Consensus       315 ----------e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~  347 (561)
T COG5354         315 ----------EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP  347 (561)
T ss_pred             ----------CcccccccccCcccEEEEecCCccccceEEecc
Confidence                      234567889999999887 4 22  99999999

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.03  E-value=1.2e-09  Score=98.42  Aligned_cols=177  Identities=24%  Similarity=0.315  Sum_probs=118.5

Q ss_pred             eeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccc
Q 014005           94 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (432)
Q Consensus        94 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  173 (432)
                      +..+.||+            ..|..+.-  -.+.+.+++++.|++|++|.++...                         
T Consensus       728 L~nf~GH~------------~~iRai~A--idNENSFiSASkDKTVKLWSik~Eg-------------------------  768 (1034)
T KOG4190|consen  728 LCNFTGHQ------------EKIRAIAA--IDNENSFISASKDKTVKLWSIKPEG-------------------------  768 (1034)
T ss_pred             eecccCcH------------HHhHHHHh--cccccceeeccCCceEEEEEecccc-------------------------
Confidence            35678888            77887776  4566789999999999999987432                         


Q ss_pred             ccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCcee
Q 014005          174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCF  253 (432)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~  253 (432)
                                         |+.         .+..|..++ ..|+..|+++.|-.+.+++++. ||.|.+||.- -+..+
T Consensus       769 -------------------D~~---------~tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPF-igr~L  817 (1034)
T KOG4190|consen  769 -------------------DEI---------GTSACQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPF-IGRLL  817 (1034)
T ss_pred             -------------------Ccc---------ccceeeeEh-hhccCcccceeeeeccceeeec-cCcceeeccc-ccchh
Confidence                               000         045577777 8999999999999988877765 8889999986 34333


Q ss_pred             eEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEE
Q 014005          254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  333 (432)
Q Consensus       254 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~  333 (432)
                      ....-  ....+....|.++.-- +..-++|.++...+|+++|.|.++-    ...++- .+.+.+       ..-+.++
T Consensus       818 aq~~d--apk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~----~~E~kV-cna~~P-------na~~R~i  882 (1034)
T KOG4190|consen  818 AQMED--APKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEW----TCELKV-CNAPGP-------NALTRAI  882 (1034)
T ss_pred             Hhhhc--CcccCCCceeEecccC-cchheeeeccchhhheeeecccccc----eeeEEe-ccCCCC-------chheeEE
Confidence            32100  0012222334333211 2213344447889999999998764    233332 222222       4568899


Q ss_pred             EEcCCCCEEEEe-eCCeEEEEec
Q 014005          334 KFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       334 ~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                      +..+.|.++|.+ +.|+|.+.|.
T Consensus       883 aVa~~GN~lAa~LSnGci~~LDa  905 (1034)
T KOG4190|consen  883 AVADKGNKLAAALSNGCIAILDA  905 (1034)
T ss_pred             EeccCcchhhHHhcCCcEEEEec
Confidence            999999999998 6699999999

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=6.5e-09  Score=91.39  Aligned_cols=269  Identities=13%  Similarity=0.118  Sum_probs=172.2

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      .-|.+.|+.+.- .-.+++.+++.||.++.|.-..-.                        -.+++..+..|.       
T Consensus         6 ymhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~is------------------------GvEfVKhFraHL-------   53 (558)
T KOG0882|consen    6 YMHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRIS------------------------GVEFVKHFRAHL-------   53 (558)
T ss_pred             hcccceeeeEee-ehhheEEeeecchhhhhcCCCCcc------------------------ceeehhhhHHHH-------
Confidence            457888888754 345789999999999999854422                        123445667777       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeC-CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC-Cccee
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS-FAHGY  186 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~  186 (432)
                           ..|.+++.  +.++.++.|.+. |..++++|++.-.......+...+           +.+ +...++. ..-++
T Consensus        54 -----~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-----------g~a-~wv~skGd~~s~I  114 (558)
T KOG0882|consen   54 -----GVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-----------GFA-EWVTSKGDKISLI  114 (558)
T ss_pred             -----HHHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCC-----------Cce-EEecCCCCeeeeE
Confidence                 88888888  789989999777 999999999876533222222222           111 1111221 11222


Q ss_pred             cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceee---EeecCCC-
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN---IVDMKPS-  261 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~---~~~~~~~-  261 (432)
                      +.+...++.+.++|-...  ......+..-|..+|.++.+++.+..+++. ..|.|.-|..+..-+..+   .+..+.. 
T Consensus       115 AVs~~~sg~i~VvD~~~d--~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT  192 (558)
T KOG0882|consen  115 AVSLFKSGKIFVVDGFGD--FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET  192 (558)
T ss_pred             EeecccCCCcEEECCcCC--cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccc
Confidence            223333778889887743  222333336789999999999999999999 899999998872111100   1111111 


Q ss_pred             ---CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccc----cccCCc--------------
Q 014005          262 ---NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA----ESHGSK--------------  320 (432)
Q Consensus       262 ---~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~----~~~~~~--------------  320 (432)
                         .+........++.|+|++ ..+++-+.|..|++++.++|++.    +.+..-.    ..+...              
T Consensus       193 dLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklv----qeiDE~~t~~~~q~ks~y~l~~VelgRRmav  267 (558)
T KOG0882|consen  193 DLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLV----QEIDEVLTDAQYQPKSPYGLMHVELGRRMAV  267 (558)
T ss_pred             hhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhh----hhhhccchhhhhccccccccceeehhhhhhH
Confidence               112234567899999999 89999999999999999998863    3333210    000000              


Q ss_pred             -cceeee-ecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          321 -SFFTEI-IASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       321 -~~~~~~-~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                       ..+..+ ...-+.+.|...|.+|+-|+-=-|++.++
T Consensus       268 erelek~~~~~~~~~~fdes~~flly~t~~gikvin~  304 (558)
T KOG0882|consen  268 ERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINL  304 (558)
T ss_pred             HhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEe
Confidence             001111 12345678999999999887766888888

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.02  E-value=3.3e-07  Score=93.09  Aligned_cols=292  Identities=14%  Similarity=0.165  Sum_probs=163.9

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccc----ccc-ccccCCcceeeeeecCCccc--
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQM----DFT-STSHPEYRYKTEFQSHEPEF--  104 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~p~~~~~~~~~~h~~~~--  104 (432)
                      ...|.|++||||++.||..+.++++.+.+.+-.- +     ....+...+    ..+ +-   ..+.-++|+|...+.  
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~-i-----~E~~l~~~~~~~~~~VsVG---WGkKeTQF~Gs~gK~aa  190 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDP-I-----SEVPLDSDDFGESKHVSVG---WGKKETQFHGSAGKAAA  190 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE-E-----EEeecCccccCCCceeeec---cCcccCccCcchhhhhh
Confidence            4589999999999999999989998876532110 0     000000000    000 00   001111222211000  


Q ss_pred             ----c-cc-----chhhhhcceeEEEEEEcCCCCEEEEEeC------CCeEEEEEccCcceeeeeecCCCCccccccccc
Q 014005          105 ----D-YL-----KSLEIEEKINRVRWCAAPNGSMFILSTN------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL  168 (432)
Q Consensus       105 ----~-~~-----~~~~~~~~v~~l~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  168 (432)
                          + .+     ..+..+..-..|+|  ..||++||+.+.      -+.+++|+-+ |.+....+-             
T Consensus       191 ~~~~~p~~~~~d~~~~s~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~-------------  254 (928)
T PF04762_consen  191 RQLRDPTVPKVDEGKLSWDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP-------------  254 (928)
T ss_pred             hhccCCCCCccccCccccCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc-------------
Confidence                0 00     00001255678999  999999999864      2578999866 443333221             


Q ss_pred             cccccccccCCCCCcceecceeec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 014005          169 AEKNFMNEHNPPSFAHGYHLEWTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  246 (432)
Q Consensus       169 ~~~~i~~~~~~~~~~~~~~~~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~  246 (432)
                      ..+--..++|.|+|.++++..... ...|.+|..+.-.-+...-.+ ......|..+.|++++..||.. .|. |.+|-.
T Consensus       255 v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~  332 (928)
T PF04762_consen  255 VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRF-DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR  332 (928)
T ss_pred             CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCC-CCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence            113345689999999999887644 336666665432222211111 2456689999999999999998 555 999988


Q ss_pred             CCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc----ccccc----cccceeeccc-----
Q 014005          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR----QSALC----DHSARILRDA-----  313 (432)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~----~~~~~----~~~~~~~~~h-----  313 (432)
                      .+.--.++.- +   . -.....+..+.|+|..+..|...+.+|.+..++..    .+...    ........|.     
T Consensus       333 ~NYHWYLKqe-i---~-~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllT  407 (928)
T PF04762_consen  333 SNYHWYLKQE-I---R-FSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLT  407 (928)
T ss_pred             eCCEEEEEEE-E---E-ccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEe
Confidence            7332222211 0   0 12223345599999887778888887777666543    11100    0001111111     


Q ss_pred             ----ccccCCc-cceeeeecceeEEEEcCCCCEEEE-eeCCeEEEEec
Q 014005          314 ----AESHGSK-SFFTEIIASISDIKFANDGQHLLS-RDYMNLKVFRY  355 (432)
Q Consensus       314 ----~~~~~~~-~~~~~~~~~v~~~~~s~dg~~l~s-~~~~~i~iwd~  355 (432)
                          ..-|.+- ..--....+|.+++|++++..+|+ -++|.+.+|..
T Consensus       408 pf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~  455 (928)
T PF04762_consen  408 PFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW  455 (928)
T ss_pred             cccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence                1112211 111223578999999999876666 46699999996

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=2e-07  Score=86.77  Aligned_cols=102  Identities=18%  Similarity=0.145  Sum_probs=62.1

Q ss_pred             EEEeCCCCCEEEEE--cCC--eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC---------
Q 014005          223 SISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---------  289 (432)
Q Consensus       223 ~~~~~~~~~~l~~~--~d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---------  289 (432)
                      ...|+|||+.++..  ..+  .|++.|+. ++...++.      ..+..    ...|+|+| +.|+.....         
T Consensus       281 ~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-~g~~~rlt------~~g~~----~~~~SPDG-~~Ia~~~~~~~~~~~~~~  348 (419)
T PRK04043        281 NGNFVEDDKRIVFVSDRLGYPNIFMKKLN-SGSVEQVV------FHGKN----NSSVSTYK-NYIVYSSRETNNEFGKNT  348 (419)
T ss_pred             ccEECCCCCEEEEEECCCCCceEEEEECC-CCCeEeCc------cCCCc----CceECCCC-CEEEEEEcCCCcccCCCC
Confidence            34799999887755  333  67777777 44432321      11211    24899999 666665533         


Q ss_pred             CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eC---CeEEEEec
Q 014005          290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY---MNLKVFRY  355 (432)
Q Consensus       290 g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~---~~i~iwd~  355 (432)
                      ..|.+.|+.++..     +.+...              .......|+|||+.|+-. ..   ..+.+.++
T Consensus       349 ~~I~v~d~~~g~~-----~~LT~~--------------~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l  399 (419)
T PRK04043        349 FNLYLISTNSDYI-----RRLTAN--------------GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL  399 (419)
T ss_pred             cEEEEEECCCCCe-----EECCCC--------------CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence            3688888887763     444431              223358899999988753 22   34556666

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.02  E-value=2.7e-07  Score=95.38  Aligned_cols=225  Identities=8%  Similarity=0.068  Sum_probs=127.8

Q ss_pred             ceeEEEEEEcCCCCEEEEEe-CCCeEEEEEccCcceeeeeecCCCC-cccc--ccccccccccccccCCCCC-cceecce
Q 014005          115 KINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFP-FVSS--ENTLLAEKNFMNEHNPPSF-AHGYHLE  189 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~i~~~~~~~~~-~~~~~~~  189 (432)
                      ....+++  .++++.|+++. ..+.|+++|..++....+....... ....  ......-..-..+++++++ ...++..
T Consensus       625 ~P~GIav--d~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~  702 (1057)
T PLN02919        625 RPQGLAY--NAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA  702 (1057)
T ss_pred             CCcEEEE--eCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence            4578888  77777766664 4567999998877654443211000 0000  0000000122457778744 3334433


Q ss_pred             eeccceEEEEeecccccceeeEEee--------cC------CCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCcee
Q 014005          190 WTENMATKIANVGNSVHARCQKVYP--------HA------HDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCF  253 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~--------~~------~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~  253 (432)
                      .  ++.|++||....   ... .+.        .+      .......++++|+++.+.++  .++.|++||++. +...
T Consensus       703 ~--~~~I~v~d~~~g---~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t-g~~~  775 (1057)
T PLN02919        703 G--QHQIWEYNISDG---VTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT-GGSR  775 (1057)
T ss_pred             C--CCeEEEEECCCC---eEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC-CcEE
Confidence            3  678888887632   211 110        00      11345679999999866655  689999999983 3221


Q ss_pred             eEeecCC---C---CcC--------CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccc--cc
Q 014005          254 NIVDMKP---S---NMD--------DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE--SH  317 (432)
Q Consensus       254 ~~~~~~~---~---~~~--------~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~--~~  317 (432)
                      ......+   .   .+.        ..-.....++++++| +++++-..+++|++||..++..     ..+.+...  ..
T Consensus       776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v-----~tiaG~G~~G~~  849 (1057)
T PLN02919        776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRV-----TTLAGTGKAGFK  849 (1057)
T ss_pred             EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeE-----EEEeccCCcCCC
Confidence            1110000   0   000        011235689999999 8888888999999999987653     33332100  00


Q ss_pred             CCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          318 GSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       318 ~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                      ... ...........++++++|+++++. .+++|++||+
T Consensus       850 dG~-~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        850 DGK-ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             CCc-ccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            000 011122467789999999977775 4499999999

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.01  E-value=4.9e-09  Score=90.96  Aligned_cols=158  Identities=15%  Similarity=0.147  Sum_probs=105.4

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCCCccccccccccccccccccCCCCCcceecceee-cc
Q 014005          117 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT-EN  193 (432)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~  193 (432)
                      ..+..  +++++++|.+..+....+++.....  .+....... +           ..-..+.+.........+... ..
T Consensus        66 ~~~~~--s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~-----------~~~~ai~~~~~~~sv~v~dkagD~  131 (390)
T KOG3914|consen   66 ALVLT--SDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-P-----------KRPTAISFIREDTSVLVADKAGDV  131 (390)
T ss_pred             ccccc--CCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-c-----------cCcceeeeeeccceEEEEeecCCc
Confidence            34445  7888999999888887788776443  111111110 0           122233333333333332221 13


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (432)
                      ..+.+|...   .+.+...  .+|-+.+..++++||+++++++ .|..|++-... .--.+..+      ..||..-|..
T Consensus       132 ~~~di~s~~---~~~~~~~--lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp-a~f~Iesf------clGH~eFVS~  199 (390)
T KOG3914|consen  132 YSFDILSAD---SGRCEPI--LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP-ATFVIESF------CLGHKEFVST  199 (390)
T ss_pred             eeeeeeccc---ccCcchh--hhhhhhhheeeecCCCCEEEEecCCceEEEEecC-cccchhhh------ccccHhheee
Confidence            345555444   3444444  5999999999999999999999 99999998777 33334433      3689999999


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      ++.-++  +.|++||.|+++++||+++|+.
T Consensus       200 isl~~~--~~LlS~sGD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  200 ISLTDN--YLLLSGSGDKTLRLWDITSGKL  227 (390)
T ss_pred             eeeccC--ceeeecCCCCcEEEEecccCCc
Confidence            999987  5699999999999999999986

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.99  E-value=5.5e-08  Score=88.57  Aligned_cols=179  Identities=15%  Similarity=0.142  Sum_probs=125.1

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeeccc
Q 014005          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  204 (432)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~  204 (432)
                      |...++|....||.+++|+...+++..-..-..                               .....+.-..|.+...
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~-------------------------------~~s~t~~~~~w~L~~~   51 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA-------------------------------SLSGTCTYTKWGLSAD   51 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccch-------------------------------hccCcceeEEEEEEec
Confidence            456789999999999999998887443211111                               0000223334443311


Q ss_pred             ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEE
Q 014005          205 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  283 (432)
Q Consensus       205 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  283 (432)
                        ..|++.. .  ...  ...-+.+...++-| ..|.|.+|+.. .++....+     +-..|.+.|+++.++.+- ..|
T Consensus        52 --~s~~k~~-~--~~~--~~~~s~~t~~lvlgt~~g~v~~ys~~-~g~it~~~-----st~~h~~~v~~~~~~~~~-~ci  117 (541)
T KOG4547|consen   52 --YSPMKWL-S--LEK--AKKASLDTSMLVLGTPQGSVLLYSVA-GGEITAKL-----STDKHYGNVNEILDAQRL-GCI  117 (541)
T ss_pred             --cchHHHH-h--HHH--HhhccCCceEEEeecCCccEEEEEec-CCeEEEEE-----ecCCCCCcceeeeccccc-Cce
Confidence              1111111 0  000  01123345567778 89999999998 56655544     336899999999999988 899


Q ss_pred             EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec---Cccee
Q 014005          284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY---EPVMT  360 (432)
Q Consensus       284 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~---~~~~~  360 (432)
                      .+++.|+.+..|+......    .+.+..-             ...+.+++.+|||..|++++ +.|++||+   +.+.+
T Consensus       118 yS~~ad~~v~~~~~~~~~~----~~~~~~~-------------~~~~~sl~is~D~~~l~~as-~~ik~~~~~~kevv~~  179 (541)
T KOG4547|consen  118 YSVGADLKVVYILEKEKVI----IRIWKEQ-------------KPLVSSLCISPDGKILLTAS-RQIKVLDIETKEVVIT  179 (541)
T ss_pred             EecCCceeEEEEeccccee----eeeeccC-------------CCccceEEEcCCCCEEEecc-ceEEEEEccCceEEEE
Confidence            9999999999999998775    5666663             56789999999999999988 89999999   78888


Q ss_pred             Eeecce
Q 014005          361 LSFCGI  366 (432)
Q Consensus       361 ~~~~~~  366 (432)
                      |..|..
T Consensus       180 ftgh~s  185 (541)
T KOG4547|consen  180 FTGHGS  185 (541)
T ss_pred             ecCCCc
Confidence            888875

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.97  E-value=1.2e-07  Score=84.16  Aligned_cols=170  Identities=16%  Similarity=0.157  Sum_probs=117.9

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc-eEEEEeecc
Q 014005          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM-ATKIANVGN  203 (432)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~v~i~d~~~  203 (432)
                      .+|.+++..|. |+..+.+...+-..++..               .+.|+-..+..+..-.+.|..  || .+-++|.+ 
T Consensus       330 ~~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~---------------~~~VrY~r~~~~~e~~vigt~--dgD~l~iyd~~-  390 (668)
T COG4946         330 VNGDYIALVSR-GKAFIMRPWDGYSIQVGK---------------KGGVRYRRIQVDPEGDVIGTN--DGDKLGIYDKD-  390 (668)
T ss_pred             CCCcEEEEEec-CcEEEECCCCCeeEEcCC---------------CCceEEEEEccCCcceEEecc--CCceEEEEecC-
Confidence            46888888876 667776665554332221               134555555555556666666  66 89999997 


Q ss_pred             cccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcE
Q 014005          204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  282 (432)
Q Consensus       204 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  282 (432)
                        .+...+.  ...-+.|.++..+++|++++++ +...+.+.|++ ++....+-       +...+-|+...|||++ ++
T Consensus       391 --~~e~kr~--e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid-ngnv~~id-------kS~~~lItdf~~~~ns-r~  457 (668)
T COG4946         391 --GGEVKRI--EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID-NGNVRLID-------KSEYGLITDFDWHPNS-RW  457 (668)
T ss_pred             --CceEEEe--eCCccceEEEEEcCCCcEEEEEcCceEEEEEEec-CCCeeEec-------ccccceeEEEEEcCCc-ee
Confidence              4443333  4677899999999999999999 88899999999 44433221       3445679999999999 99


Q ss_pred             EEEEeCCC----eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          283 LAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       283 l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      +|.+--+|    .|+++|+..++..    ..-..              .+.=.+-+|.|||++|.-
T Consensus       458 iAYafP~gy~tq~Iklydm~~~Kiy----~vTT~--------------ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         458 IAYAFPEGYYTQSIKLYDMDGGKIY----DVTTP--------------TAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             EEEecCcceeeeeEEEEecCCCeEE----EecCC--------------cccccCcccCCCCcEEEE
Confidence            99987766    6899999987752    22221              233446789999998753

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.96  E-value=3.8e-09  Score=95.18  Aligned_cols=214  Identities=11%  Similarity=0.081  Sum_probs=136.0

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      +|+..|..+.--.+.+-+++++.|.+|++|.+......         .           ....+..+++.|+        
T Consensus       733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------~-----------~tsaCQfTY~aHk--------  784 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------I-----------GTSACQFTYQAHK--------  784 (1034)
T ss_pred             CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc---------c-----------ccceeeeEhhhcc--------
Confidence            56777777755455667889999999999998653210         0           0233557889999        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceee-eeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                          .+|.++.|+  .+.++++++  ||.|.+||.--+.... ...-..         +...+.|.++.- -+.. ++..
T Consensus       785 ----k~i~~igfL--~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk---------~~a~~~ikcl~n-v~~~-iliA  845 (1034)
T KOG4190|consen  785 ----KPIHDIGFL--ADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPK---------EGAGGNIKCLEN-VDRH-ILIA  845 (1034)
T ss_pred             ----Ccccceeee--eccceeeec--cCcceeecccccchhHhhhcCcc---------cCCCceeEeccc-Ccch-heee
Confidence                999999994  566666655  7889999987665221 111110         011123333322 1222 3333


Q ss_pred             eeeccceEEEEeecccccceeeEEee--cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYP--HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      +-.+..+|+++|.+.. ...|....-  .+...-+.++++.+.|+.++.+ .+|.|.+.|.+ ++..+..+       ..
T Consensus       846 gcsaeSTVKl~DaRsc-e~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR-~G~vINsw-------rp  916 (1034)
T KOG4190|consen  846 GCSAESTVKLFDARSC-EWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDAR-NGKVINSW-------RP  916 (1034)
T ss_pred             eccchhhheeeecccc-cceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecC-CCceeccC-------Cc
Confidence            2233789999998844 222322221  2344678899999999999999 99999999999 67777655       22


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEE-EEccccc
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRL-VDMRQSA  301 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i-wd~~~~~  301 (432)
                      .......++ .|.. +.|+....|.++.+ |...++.
T Consensus       917 mecdllqla-apsd-q~L~~saldHslaVnWhaldgi  951 (1034)
T KOG4190|consen  917 MECDLLQLA-APSD-QALAQSALDHSLAVNWHALDGI  951 (1034)
T ss_pred             ccchhhhhc-Cchh-HHHHhhcccceeEeeehhcCCe
Confidence            222232333 2444 77888888889988 8766554

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=1.2e-06  Score=79.41  Aligned_cols=245  Identities=12%  Similarity=0.149  Sum_probs=147.8

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecc-----------cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeee
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDR-----------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF   97 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   97 (432)
                      +.|+ .|.-+.|||+.+||+|-+.           ...++|||+.+|.+.                           +.|
T Consensus       247 F~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk---------------------------rsF  298 (698)
T KOG2314|consen  247 FYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK---------------------------RSF  298 (698)
T ss_pred             ccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh---------------------------cce
Confidence            3454 5788999999999998542           257999999998754                           222


Q ss_pred             ecCCccccccchhhhhcce-eEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccc
Q 014005           98 QSHEPEFDYLKSLEIEEKI-NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE  176 (432)
Q Consensus        98 ~~h~~~~~~~~~~~~~~~v-~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  176 (432)
                      ..-...          ..+ .-..|  |.|++++|--.. ..|.|++...-.  .+..-....           .+|...
T Consensus       299 ~~~~~~----------~~~WP~frW--S~DdKy~Arm~~-~sisIyEtpsf~--lld~Kslki-----------~gIr~F  352 (698)
T KOG2314|consen  299 PVIKSP----------YLKWPIFRW--SHDDKYFARMTG-NSISIYETPSFM--LLDKKSLKI-----------SGIRDF  352 (698)
T ss_pred             eccCCC----------ccccceEEe--ccCCceeEEecc-ceEEEEecCcee--eecccccCC-----------ccccCc
Confidence            221100          112 23578  889988887765 568898865432  222222222           788999


Q ss_pred             cCCCCCcceecceeec---cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c----C------CeEE
Q 014005          177 HNPPSFAHGYHLEWTE---NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----D------LRIN  242 (432)
Q Consensus       177 ~~~~~~~~~~~~~~~~---~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~----d------~~i~  242 (432)
                      .|+|.+..++--....   -..+.+-.+.   ..+.+++- .-+.-.=..+.|..+|.+|+.- +    .      ..+.
T Consensus       353 swsP~~~llAYwtpe~~~~parvtL~evP---s~~~iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~e  428 (698)
T KOG2314|consen  353 SWSPTSNLLAYWTPETNNIPARVTLMEVP---SKREIRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLE  428 (698)
T ss_pred             ccCCCcceEEEEcccccCCcceEEEEecC---ccceeeec-cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEE
Confidence            9999877665443221   1234444444   33333332 1121122246688889888864 1    1      1245


Q ss_pred             EEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe---CCCeEEEEEccccccccccceeecccccccCC
Q 014005          243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGS  319 (432)
Q Consensus       243 lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~  319 (432)
                      |+.++-..-++..+        .....|...+|-|.| ..+++-+   ...++.+|.+.+......+++.+..       
T Consensus       429 IfrireKdIpve~v--------elke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-------  492 (698)
T KOG2314|consen  429 IFRIREKDIPVEVV--------ELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-------  492 (698)
T ss_pred             EEEeeccCCCceee--------ecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhcc-------
Confidence            55555333333333        334568899999999 5555543   3357889988743222222444443       


Q ss_pred             ccceeeeecceeEEEEcCCCCEEEEe---eC-CeEEEEec
Q 014005          320 KSFFTEIIASISDIKFANDGQHLLSR---DY-MNLKVFRY  355 (432)
Q Consensus       320 ~~~~~~~~~~v~~~~~s~dg~~l~s~---~~-~~i~iwd~  355 (432)
                              ...+.+.|+|.|++++.+   +. |.+.++|.
T Consensus       493 --------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~  524 (698)
T KOG2314|consen  493 --------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDT  524 (698)
T ss_pred             --------cccceEEEcCCCcEEEEEEecccccceEEEec
Confidence                    457789999999999873   33 89999999

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.93  E-value=1.3e-06  Score=88.85  Aligned_cols=254  Identities=11%  Similarity=0.086  Sum_probs=155.8

Q ss_pred             CCCcEEEEEEcCCCCEEEEecccceEEEE----EecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILF----ETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      ..+.|.++.|-++...|+.+..+|.|.+.    +.....                         .+.+..+   .     
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-------------------------~E~VG~v---d-----  120 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-------------------------IEIVGSV---D-----  120 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-------------------------eEEEEEE---c-----
Confidence            45689999999999989999999999998    333322                         1111211   1     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc-------------ceeee------eecCCCCcccccccc
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-------------KVKKI------KEMDHFPFVSSENTL  167 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-------------~~~~~------~~~~~~~~~~~~~~~  167 (432)
                             ..|.+++|  |||++.++..+.++++.+-.-.-.             ..+.+      ++-++|.   +..+.
T Consensus       121 -------~GI~a~~W--SPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~G---s~gK~  188 (928)
T PF04762_consen  121 -------SGILAASW--SPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHG---SAGKA  188 (928)
T ss_pred             -------CcEEEEEE--CCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCc---chhhh
Confidence                   88999999  999999999999998887542210             00000      0001100   00110


Q ss_pred             ------------------ccccccccccCCCCCcceecceeec--c--ceEEEEeecccccceeeEEeecCCCCCeeEEE
Q 014005          168 ------------------LAEKNFMNEHNPPSFAHGYHLEWTE--N--MATKIANVGNSVHARCQKVYPHAHDFNINSIS  225 (432)
Q Consensus       168 ------------------~~~~~i~~~~~~~~~~~~~~~~~~~--~--~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~  225 (432)
                                        .....-..++|-.||.+++..+..+  +  ..+++|+.+..    ...+- ..-.+--.+++
T Consensus       189 aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~----L~stS-E~v~gLe~~l~  263 (928)
T PF04762_consen  189 AARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE----LQSTS-EPVDGLEGALS  263 (928)
T ss_pred             hhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce----EEecc-ccCCCccCCcc
Confidence                              0123445678889999999888733  3  58999987632    21111 22233345789


Q ss_pred             eCCCCCEEEEE-c---CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccc
Q 014005          226 NNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA  301 (432)
Q Consensus       226 ~~~~~~~l~~~-~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~  301 (432)
                      |-|.|+++|+. .   ...|.+|..+  |.....|.++.   ......|..+.|++++ .+||..-.|. |.+|-..+..
T Consensus       264 WrPsG~lIA~~q~~~~~~~VvFfErN--GLrhgeF~l~~---~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  264 WRPSGNLIASSQRLPDRHDVVFFERN--GLRHGEFTLRF---DPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             CCCCCCEEEEEEEcCCCcEEEEEecC--CcEeeeEecCC---CCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCE
Confidence            99999999987 3   3456667665  54444443321   2345678999999999 9999977665 9999988765


Q ss_pred             cccccceeecccccccCCccceeeeecceeEEEEcCCC-CEEEEeeC-CeEEEEec
Q 014005          302 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       302 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~s~~~-~~i~iwd~  355 (432)
                      -..  .+.+.-. .           ...+..+.|+|.. ..|..... |.+..+++
T Consensus       337 WYL--Kqei~~~-~-----------~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  337 WYL--KQEIRFS-S-----------SESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             EEE--EEEEEcc-C-----------CCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            322  1222210 0           2344558888853 33444333 66655555

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.88  E-value=1.7e-07  Score=79.85  Aligned_cols=242  Identities=11%  Similarity=0.074  Sum_probs=153.5

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecC-CcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      +|.+.|+....-|...-+++.+.|.++|||--.+ ++.-                        .  .......       
T Consensus        22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~w------------------------p--sI~~~mP-------   68 (404)
T KOG1409|consen   22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYW------------------------P--SIYHYMP-------   68 (404)
T ss_pred             CchhhhhhheeccCCCCeEEccccceeeeEEeccccccC------------------------c--hhhhhCC-------
Confidence            4677888888888888899999999999996443 3211                        0  0111122       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc--ceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                           .+++++++  .++...|+.|-..|++.-+.+...  +.........|.           ..+..+.|+-...+++
T Consensus        69 -----~~~~~~~y--~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~-----------~~v~~~if~~~~e~V~  130 (404)
T KOG1409|consen   69 -----SPCSAMEY--VSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQ-----------ARVSAIVFSLTHEWVL  130 (404)
T ss_pred             -----CCceEeee--eccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhh-----------cceeeEEecCCceeEE
Confidence                 78999999  788889999999999988877532  222222233333           6677777777777777


Q ss_pred             cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCC-CceeeEeecCCCCcC
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMD  264 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~-~~~~~~~~~~~~~~~  264 (432)
                      +.+.  |..+.-.-.+   .+..+..+.  -.....++.+.-  .+...| ..|.+..-.+... -..+..       +.
T Consensus       131 s~~~--dk~~~~hc~e---~~~~lg~Y~--~~~~~t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~-------~~  194 (404)
T KOG1409|consen  131 STGK--DKQFAWHCTE---SGNRLGGYN--FETPASALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITT-------FN  194 (404)
T ss_pred             Eecc--ccceEEEeec---cCCcccceE--eeccCCCCceee--EEEEecccccceEEEEEeecCCceEEE-------Ec
Confidence            6665  3333221111   111100000  000011111111  134455 5666666655521 123333       48


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      +|.+.+.+++|.|.. .+|.+|..|..+.+||+-.++-.   ...+.+|             ...|..+...+--+.|.+
T Consensus       195 ~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~---~~el~gh-------------~~kV~~l~~~~~t~~l~S  257 (404)
T KOG1409|consen  195 GHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGT---AYELQGH-------------NDKVQALSYAQHTRQLIS  257 (404)
T ss_pred             CcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcce---eeeeccc-------------hhhhhhhhhhhhheeeee
Confidence            999999999999998 99999999999999999754432   3556665             677888877777777777


Q ss_pred             e-eCCeEEEEec
Q 014005          345 R-DYMNLKVFRY  355 (432)
Q Consensus       345 ~-~~~~i~iwd~  355 (432)
                      + .||.|.+||+
T Consensus       258 ~~edg~i~~w~m  269 (404)
T KOG1409|consen  258 CGEDGGIVVWNM  269 (404)
T ss_pred             ccCCCeEEEEec
Confidence            5 5699999999

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.86  E-value=4.1e-06  Score=70.25  Aligned_cols=220  Identities=15%  Similarity=0.173  Sum_probs=120.2

Q ss_pred             EEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhccee
Q 014005           38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  117 (432)
Q Consensus        38 ~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~  117 (432)
                      ++.+.+|+.||.- .|..|.|-..++.-..                         .+...+-.+   |.      .-.-.
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~s-------------------------i~~kcqVpk---D~------~PQWR   47 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSS-------------------------IIGKCQVPK---DP------NPQWR   47 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchh-------------------------eeEEEecCC---CC------Cchhe
Confidence            5677899988875 5667777665543210                         111222221   00      03456


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEE
Q 014005          118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK  197 (432)
Q Consensus       118 ~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~  197 (432)
                      .++|  +||+.+||.+...|+|+++|+.+..+..+..-.                    .+..+                
T Consensus        48 kl~W--SpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~--------------------~~~~d----------------   89 (282)
T PF15492_consen   48 KLAW--SPDCTLLAYAESTGTIRVFDLMGSELFVIPPAM--------------------SFPGD----------------   89 (282)
T ss_pred             EEEE--CCCCcEEEEEcCCCeEEEEecccceeEEcCccc--------------------ccCCc----------------
Confidence            7999  999999999999999999999875533221100                    00000                


Q ss_pred             EEeecccccceeeEEeecCCCCCeeEEEeCC-------CCCEEEEEcCCeEEEEeCCC----CCceeeEeecCCCCc-CC
Q 014005          198 IANVGNSVHARCQKVYPHAHDFNINSISNNS-------DCETFVSADDLRINLWNLEI----SDQCFNIVDMKPSNM-DD  265 (432)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~d~~i~lwd~~~----~~~~~~~~~~~~~~~-~~  265 (432)
                                         -...|..+.|.+       ....++....|.++-|-+..    .-+....+     .+ ..
T Consensus        90 -------------------~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsf-----sf~~~  145 (282)
T PF15492_consen   90 -------------------LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSF-----SFSSH  145 (282)
T ss_pred             -------------------cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEE-----Eeccc
Confidence                               011122222211       11234444677666665421    11122222     11 23


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCC-----------CeEEEEEccccccccccceeeccccc-ccC--------Cccce--
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSR-----------GFVRLVDMRQSALCDHSARILRDAAE-SHG--------SKSFF--  323 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~h~~-~~~--------~~~~~--  323 (432)
                      +...|+++.++|.. ++|+.||..           .-+.-|.+-++..-.+.+...+.+.. .+.        ...++  
T Consensus       146 yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~  224 (282)
T PF15492_consen  146 YPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR  224 (282)
T ss_pred             CCCceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec
Confidence            46689999999998 888877622           13566766655432111111111000 000        00111  


Q ss_pred             -eeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          324 -TEIIASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       324 -~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                       ......|..|..||||+.||+..- |.|.+|++
T Consensus       225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i  258 (282)
T PF15492_consen  225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI  258 (282)
T ss_pred             cccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence             112568999999999999999744 99999999

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.81  E-value=9.6e-07  Score=82.52  Aligned_cols=242  Identities=12%  Similarity=0.132  Sum_probs=166.3

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee-cCCccccccc
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLK  108 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h~~~~~~~~  108 (432)
                      +|++.|.-+.|+.+.+.|-|.+.+|-|.+|-+-.+.-.                         . ..+. -.+       
T Consensus        69 GH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~-------------------------E-EMiNnRnK-------  115 (1189)
T KOG2041|consen   69 GHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWC-------------------------E-EMINNRNK-------  115 (1189)
T ss_pred             cCcceEEEEEeccccccccccCCCceEEEEeeecccHH-------------------------H-HHhhCcCc-------
Confidence            78999999999999999999999999999998776421                         0 0111 122       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           +.|.+++|  +.||+.++..-.||.|.+=.+.+..+-   .-..           .......+.|+++...+..+
T Consensus       116 -----SvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNRIw---gKeL-----------kg~~l~hv~ws~D~~~~Lf~  174 (1189)
T KOG2041|consen  116 -----SVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNRIW---GKEL-----------KGQLLAHVLWSEDLEQALFK  174 (1189)
T ss_pred             -----cEEEEEEE--cCCCcEEEEEEccCCEEEEeeccceec---chhc-----------chheccceeecccHHHHHhh
Confidence                 67899999  899999999999999988777655421   1000           01234567899998888887


Q ss_pred             eeeccceEEEEeecccccc----eeeEEe---ecCCCCCeeEEEeC--------CCCCEEEEE-cCCeEEEEeCCCCCce
Q 014005          189 EWTENMATKIANVGNSVHA----RCQKVY---PHAHDFNINSISNN--------SDCETFVSA-DDLRINLWNLEISDQC  252 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~----~~~~~~---~~~~~~~i~~~~~~--------~~~~~l~~~-~d~~i~lwd~~~~~~~  252 (432)
                      ..  +|.+.+||.+.+...    .|.-..   .......|..+.|.        |+...++++ .+|.+.+-.-+....+
T Consensus       175 ~a--nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P  252 (1189)
T KOG2041|consen  175 KA--NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP  252 (1189)
T ss_pred             hc--CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence            77  889999997643211    221111   01222346666665        578889999 9999888766633322


Q ss_pred             eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC---------eEEEEEccccccccccceeecccccccCCccce
Q 014005          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---------FVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (432)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~  323 (432)
                      . ++        ...-.+..+.|+++| .+||.++.+.         .|.+|..- |+.    +..++.-          
T Consensus       253 v-v~--------dtgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i----~gtlkvp----------  307 (1189)
T KOG2041|consen  253 V-VV--------DTGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPY-GHI----VGTLKVP----------  307 (1189)
T ss_pred             e-EE--------ecccEeecceecCCC-cEEEEccCcccccCccccceEEEeccc-hhh----eEEEecC----------
Confidence            2 22        122458899999999 9999998653         45555433 333    4555541          


Q ss_pred             eeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          324 TEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       324 ~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                         ...|++++|-..|-.+|.+-|+.|++=++
T Consensus       308 ---g~~It~lsWEg~gLriA~AvdsfiyfanI  336 (1189)
T KOG2041|consen  308 ---GSCITGLSWEGTGLRIAIAVDSFIYFANI  336 (1189)
T ss_pred             ---CceeeeeEEcCCceEEEEEecceEEEEee
Confidence               56899999998888888877788877776

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.81  E-value=2e-08  Score=85.54  Aligned_cols=160  Identities=10%  Similarity=0.107  Sum_probs=115.6

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEE
Q 014005          120 RWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIA  199 (432)
Q Consensus       120 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~  199 (432)
                      +|.-+..+-. ++.+.+-.|.+-|++++....+.               ..+.|.+..|...+..+..|..  +|.|..+
T Consensus       218 awSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~---------------sksDVfAlQf~~s~nLv~~GcR--ngeI~~i  279 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ---------------SKSDVFALQFAGSDNLVFNGCR--NGEIFVI  279 (425)
T ss_pred             hhhhccceee-ecccccceeEEEEeecccccccc---------------cchhHHHHHhcccCCeeEeccc--CCcEEEE
Confidence            5522223433 55566778999999988644332               1378999999999999999999  9999999


Q ss_pred             eecccc--cceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCce---eeEeecCCCCcCCCCcceEE
Q 014005          200 NVGNSV--HARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQC---FNIVDMKPSNMDDLTEVITS  272 (432)
Q Consensus       200 d~~~~~--~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~  272 (432)
                      |++...  .+.+.+.+  -|++.|+++..-. ++++|.+. .+|+|.+||++ ..++   +..+       .+|.+.-.-
T Consensus       280 DLR~rnqG~~~~a~rl--yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R-~~K~~~~V~qY-------eGHvN~~a~  349 (425)
T KOG2695|consen  280 DLRCRNQGNGWCAQRL--YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR-ATKCKKSVMQY-------EGHVNLSAY  349 (425)
T ss_pred             EeeecccCCCcceEEE--EcCcchhhhhhhccccceEeeccCcCceeEeeeh-hhhcccceeee-------ecccccccc
Confidence            998542  23444444  6899999998776 67777777 99999999999 4455   5544       777554333


Q ss_pred             EE--EcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc
Q 014005          273 AE--FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  312 (432)
Q Consensus       273 ~~--~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (432)
                      +.  .++.. ..+++++.|...+||.++.|.+    +.++.-
T Consensus       350 l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghL----l~tipf  386 (425)
T KOG2695|consen  350 LPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHL----LCTIPF  386 (425)
T ss_pred             ccccccccc-ceEEEccCeeEEEEEecccCce----eeccCC
Confidence            33  34555 7888899999999999999887    455544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.79  E-value=6.8e-06  Score=71.07  Aligned_cols=242  Identities=14%  Similarity=0.126  Sum_probs=148.1

Q ss_pred             cEEEEEEcC-CCCEEEEecccce-EEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           34 IVSAIEFDK-TGDYLAVGDRGGR-VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        34 ~V~~~~fsp-~g~~l~t~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ....++.+| .+..++.+-.-|+ ..+||..+++....       +..            ..-..|.||-          
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~-------~~a------------~~gRHFyGHg----------   56 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQR-------LWA------------PPGRHFYGHG----------   56 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeE-------EcC------------CCCCEEecCE----------
Confidence            456788899 5566777777665 67899988764411       000            0113456664          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEe-----CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          112 IEEKINRVRWCAAPNGSMFILST-----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                              .|  ++||++|++.-     ..|.|-|||.. ....++.++..+.           -.--.+.+.|++..++
T Consensus        57 --------~f--s~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E~~s~G-----------IGPHel~l~pDG~tLv  114 (305)
T PF07433_consen   57 --------VF--SPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIGEFPSHG-----------IGPHELLLMPDGETLV  114 (305)
T ss_pred             --------EE--cCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEeEecCCC-----------cChhhEEEcCCCCEEE
Confidence                    67  89999999973     35899999998 3344555554433           2334567788885554


Q ss_pred             cc--eeec---cc-----------eEEEEeecccccceeeEEe---ecCCCCCeeEEEeCCCCCEEEEE-cCCe------
Q 014005          187 HL--EWTE---NM-----------ATKIANVGNSVHARCQKVY---PHAHDFNINSISNNSDCETFVSA-DDLR------  240 (432)
Q Consensus       187 ~~--~~~~---~~-----------~v~i~d~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~-~d~~------  240 (432)
                      .+  +...   .|           .+...|..   +++.+...   ...|.-.|..+++.++|..+... ..|.      
T Consensus       115 VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~---sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~P  191 (305)
T PF07433_consen  115 VANGGIETHPDSGRAKLNLDTMQPSLVYLDAR---SGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPP  191 (305)
T ss_pred             EEcCCCccCcccCceecChhhcCCceEEEecC---CCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCC
Confidence            43  2211   12           34444444   44444432   12366789999999999766655 3332      


Q ss_pred             -EEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEE-EeCCCeEEEEEccccccccccceeecccccccC
Q 014005          241 -INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHG  318 (432)
Q Consensus       241 -i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~  318 (432)
                       +-+++..   ..+..+...........+.+-+|++++++ ..+++ +-..+.+.+||..+++.    +....-      
T Consensus       192 Lva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~tsPrGg~~~~~d~~tg~~----~~~~~l------  257 (305)
T PF07433_consen  192 LVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVTSPRGGRVAVWDAATGRL----LGSVPL------  257 (305)
T ss_pred             eEEEEcCC---CcceeccCChHHHHhhCCceEEEEEeCCC-CEEEEECCCCCEEEEEECCCCCE----eecccc------
Confidence             3333333   33444433333334556789999999998 66654 44777999999999876    333332      


Q ss_pred             CccceeeeecceeEEEEcCCCCEEEEeeCCeEEEE
Q 014005          319 SKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF  353 (432)
Q Consensus       319 ~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iw  353 (432)
                               ..+..++-.+++ +++|...|.+...
T Consensus       258 ---------~D~cGva~~~~~-f~~ssG~G~~~~~  282 (305)
T PF07433_consen  258 ---------PDACGVAPTDDG-FLVSSGQGQLIRL  282 (305)
T ss_pred             ---------CceeeeeecCCc-eEEeCCCccEEEc
Confidence                     457778877777 7777655554333

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.78  E-value=2.1e-06  Score=70.95  Aligned_cols=190  Identities=11%  Similarity=-0.014  Sum_probs=116.7

Q ss_pred             CEEEEEeCCCeEEEEEccCcce--eeeeecCCCCccccccccccccccccccCCCC-CcceecceeeccceEEEEeeccc
Q 014005          128 SMFILSTNDKTIKLWKVRDQKV--KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS-FAHGYHLEWTENMATKIANVGNS  204 (432)
Q Consensus       128 ~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~v~i~d~~~~  204 (432)
                      .+|+.|+..|...+|...+.+.  ......+              ..|.-..-..+ ..-+..++.  |.++++.++...
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~sn--------------n~v~~~~r~cd~~~~~~i~sn--dht~k~~~~~~~  148 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSN--------------NDVTLVKRYCDLKFPLNIASN--DHTGKTMVVSGD  148 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccc--------------cchhhhhhhcccccceeeccC--CcceeEEEEecC
Confidence            4788888889999999876542  1111110              11111100011 111222222  667788877754


Q ss_pred             ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEE
Q 014005          205 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  283 (432)
Q Consensus       205 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  283 (432)
                      ..+..+..-    .-.+++++++++++++++. +...|..|.++..++.+..+..     ......=.+..|+... ..+
T Consensus       149 s~~~~~h~~----~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~-----a~t~D~gF~~S~s~~~-~~F  218 (344)
T KOG4532|consen  149 SNKFAVHNQ----NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE-----APTSDHGFYNSFSEND-LQF  218 (344)
T ss_pred             cccceeecc----ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe-----cccCCCceeeeeccCc-ceE
Confidence            333333221    1238899999999999987 8889999999855544332211     2223334677899888 899


Q ss_pred             EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC--EEEEeeC-CeEEEEec
Q 014005          284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDY-MNLKVFRY  355 (432)
Q Consensus       284 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~--~l~s~~~-~~i~iwd~  355 (432)
                      |++..||++.|||+|.....-.....-+.|            |.+.+..+.|++.|.  +|.-... +.+.+-|+
T Consensus       219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~------------hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~  281 (344)
T KOG4532|consen  219 AVVFQDGTCAIYDVRNMATPMAEISSTRPH------------HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT  281 (344)
T ss_pred             EEEecCCcEEEEEecccccchhhhcccCCC------------CCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence            999999999999999755321111111111            478999999998764  3444433 89999999

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.77  E-value=5.8e-08  Score=90.68  Aligned_cols=209  Identities=12%  Similarity=0.174  Sum_probs=142.5

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .-.+++.++..+|.|+-+|.++.-| +.+-|++..-.                          ...-+..-+        
T Consensus        22 ~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~--------------------------ppr~l~h~t--------   66 (1081)
T KOG0309|consen   22 KVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT--------------------------PPRWLHHIT--------   66 (1081)
T ss_pred             EecCcccceeeccccchhhhhhhcC-eEEEeccCCCC--------------------------CceeeeccC--------
Confidence            3455788999999999999998865 55667766421                          111111111        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeee-eecCCCCccccccccccccccccccCCCCCc-ceec
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYH  187 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~  187 (432)
                         +-.|-...|+|++...+-++......-.+|++....-..+ .-+.+|.           ..+.++.|+++.. .+++
T Consensus        67 ---pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghs-----------raitd~n~~~q~pdVlat  132 (1081)
T KOG0309|consen   67 ---PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHS-----------RAITDINFNPQHPDVLAT  132 (1081)
T ss_pred             ---cchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCc-----------cceeccccCCCCCcceee
Confidence               0346677887777667777766667778899864432111 1223333           6889999998865 4455


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCE-EEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      .+.  |..+..||++.  ...++..+ ..-......+.|+..... +|+...+.|++||.+..+..+..+       ++|
T Consensus       133 csv--dt~vh~wd~rS--p~~p~ys~-~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~-------K~~  200 (1081)
T KOG0309|consen  133 CSV--DTYVHAWDMRS--PHRPFYST-SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSL-------KGH  200 (1081)
T ss_pred             ccc--cccceeeeccC--CCcceeee-ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEe-------ccc
Confidence            566  88999999984  33444444 344456678899875444 444488899999999666666655       779


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~  299 (432)
                      ...|+.++|..--...+.+++.|++|+.||...
T Consensus       201 vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  201 VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             ceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence            899999999764436788899999999999764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.70  E-value=6.9e-05  Score=65.13  Aligned_cols=223  Identities=15%  Similarity=0.087  Sum_probs=136.9

Q ss_pred             EEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcc
Q 014005           37 AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (432)
Q Consensus        37 ~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (432)
                      ++.|.+ +|.++++--..+.|..|+..+++..                            .+. .             ..
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~----------------------------~~~-~-------------~~   41 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE----------------------------VID-L-------------PG   41 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE----------------------------EEE-S-------------SS
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE----------------------------EEe-c-------------CC
Confidence            578888 7777777767889999998876421                            111 1             22


Q ss_pred             eeEEEEEEc-CCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec--
Q 014005          116 INRVRWCAA-PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE--  192 (432)
Q Consensus       116 v~~l~~~~s-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--  192 (432)
                      ...+.+  . +++ .++.+..++ +.++|..+++...+.......        .......++++.+++.+.++.....  
T Consensus        42 ~~G~~~--~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~--------~~~~~~ND~~vd~~G~ly~t~~~~~~~  109 (246)
T PF08450_consen   42 PNGMAF--DRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGG--------VPFNRPNDVAVDPDGNLYVTDSGGGGA  109 (246)
T ss_dssp             EEEEEE--ECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTC--------SCTEEEEEEEE-TTS-EEEEEECCBCT
T ss_pred             CceEEE--EccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCC--------cccCCCceEEEcCCCCEEEEecCCCcc
Confidence            567777  4 565 556665555 555599988776665542100        0125677889999998665544321  


Q ss_pred             --c--ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCcee---eEeecCCCCc
Q 014005          193 --N--MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCF---NIVDMKPSNM  263 (432)
Q Consensus       193 --~--~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~---~~~~~~~~~~  263 (432)
                        .  +.+..++..    ++.....  ..-...+.++|+|+++.|..+  ..+.|..++++..+..+   +.+    ..+
T Consensus       110 ~~~~~g~v~~~~~~----~~~~~~~--~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~----~~~  179 (246)
T PF08450_consen  110 SGIDPGSVYRIDPD----GKVTVVA--DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF----IDF  179 (246)
T ss_dssp             TCGGSEEEEEEETT----SEEEEEE--EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE----EE-
T ss_pred             ccccccceEEECCC----CeEEEEe--cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeE----EEc
Confidence              1  334444443    1222222  234567899999999988766  68889999886333311   111    011


Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc-CCCCEE
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDGQHL  342 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l  342 (432)
                      ....+....++++.+| ++.++....+.|.++|.. |++    +..+.. +            ...+++++|. ++.+.|
T Consensus       180 ~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~-G~~----~~~i~~-p------------~~~~t~~~fgg~~~~~L  240 (246)
T PF08450_consen  180 PGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD-GKL----LREIEL-P------------VPRPTNCAFGGPDGKTL  240 (246)
T ss_dssp             SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCE----EEEEE--S------------SSSEEEEEEESTTSSEE
T ss_pred             CCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC-ccE----EEEEcC-C------------CCCEEEEEEECCCCCEE
Confidence            2222457899999999 888887789999999987 765    455544 1            2478999994 565444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.69  E-value=5.3e-07  Score=78.56  Aligned_cols=159  Identities=11%  Similarity=0.063  Sum_probs=100.3

Q ss_pred             cccCCCCCcceecceeeccceEEEEeeccccc-ceeeEEeecCCCCCeeEEEeCCCCCEEEEE----cCCeEEEEeCCCC
Q 014005          175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEIS  249 (432)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~d~~i~lwd~~~~  249 (432)
                      ....++.+..++.+..  +....++++..... .++...+  .-...-+++.+..+......+    +...+.+|... .
T Consensus        67 ~~~~s~~~~llAv~~~--~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~-~  141 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATS--SKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD-S  141 (390)
T ss_pred             ccccCCCceEEEEEeC--CCceEEEEEecCCCcceeeeEe--ecccCcceeeeeeccceEEEEeecCCceeeeeeccc-c
Confidence            3445666677776665  55555666553322 2333332  222334455555554444444    34455555555 2


Q ss_pred             CceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee-cccccccCCccceeeeec
Q 014005          250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIA  328 (432)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~  328 (432)
                      +.+.        .+-+|-+.+..++++||+ ++++++..|..|++-....-..    +..| -||             ..
T Consensus       142 ~~~~--------~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~----IesfclGH-------------~e  195 (390)
T KOG3914|consen  142 GRCE--------PILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFV----IESFCLGH-------------KE  195 (390)
T ss_pred             cCcc--------hhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccc----hhhhcccc-------------Hh
Confidence            2222        237999999999999999 9999999999999987764332    2333 345             78


Q ss_pred             ceeEEEEcCCCCEEEE-eeCCeEEEEec---CcceeEeecc
Q 014005          329 SISDIKFANDGQHLLS-RDYMNLKVFRY---EPVMTLSFCG  365 (432)
Q Consensus       329 ~v~~~~~s~dg~~l~s-~~~~~i~iwd~---~~~~~~~~~~  365 (432)
                      -|..++.-++-. |++ |+|+++++||+   +.+.++....
T Consensus       196 FVS~isl~~~~~-LlS~sGD~tlr~Wd~~sgk~L~t~dl~s  235 (390)
T KOG3914|consen  196 FVSTISLTDNYL-LLSGSGDKTLRLWDITSGKLLDTCDLSS  235 (390)
T ss_pred             heeeeeeccCce-eeecCCCCcEEEEecccCCcccccchhH
Confidence            999999887654 565 57899999999   5556655543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.67  E-value=3e-08  Score=94.34  Aligned_cols=215  Identities=17%  Similarity=0.242  Sum_probs=142.1

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .|...-+|++|+-..++|+.|+..|.|+++++.++...                           ....+|+        
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e---------------------------~s~ncH~-------- 1143 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME---------------------------ESVNCHQ-------- 1143 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeeccceEEEEEccCcccc---------------------------ccccccc--------
Confidence            45678899999999999999999999999999988643                           4677888        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCC--eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                          ..|+.+.=  +.+|..+++.+.-.  -..+|++..- ......+               ..-.++.|+....+-+.
T Consensus      1144 ----SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~-~~~~Hsf---------------~ed~~vkFsn~~q~r~~ 1201 (1516)
T KOG1832|consen 1144 ----SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASST-GGPRHSF---------------DEDKAVKFSNSLQFRAL 1201 (1516)
T ss_pred             ----cccccccc--cCCcceeeeeccccCchHHHhccccc-cCccccc---------------cccceeehhhhHHHHHh
Confidence                88888876  88998877764432  5789998642 1111111               22345667766666666


Q ss_pred             ceeeccceEEEEeecccccceeeEEeec---CCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPH---AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (432)
                      |+.  .....+||++   +.....++..   +....-++..|+|....++  .||.  +||++. .+.++.|       .
T Consensus      1202 gt~--~d~a~~YDvq---T~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndGv--LWDvR~-~~aIh~F-------D 1264 (1516)
T KOG1832|consen 1202 GTE--ADDALLYDVQ---TCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDGV--LWDVRI-PEAIHRF-------D 1264 (1516)
T ss_pred             ccc--ccceEEEecc---cCcHHHHhcCcchhhhhhccccccCCCcceEe--eCce--eeeecc-HHHHhhh-------h
Confidence            665  5678899998   4444444211   2233447788999887665  4554  799993 4555544       2


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      ..+ .--.-.|||.| ..++.-+     .|||+|+-++    ++....               -.-..+.|+..|..+..
T Consensus      1265 ~ft-~~~~G~FHP~g-~eVIINS-----EIwD~RTF~l----Lh~VP~---------------Ldqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1265 QFT-DYGGGGFHPSG-NEVIINS-----EIWDMRTFKL----LHSVPS---------------LDQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred             hhe-ecccccccCCC-ceEEeec-----hhhhhHHHHH----HhcCcc---------------ccceEEEeccCccchhh
Confidence            222 11234699999 6555443     5999998765    343332               12346788888876543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.66  E-value=9e-06  Score=84.41  Aligned_cols=236  Identities=10%  Similarity=0.090  Sum_probs=133.5

Q ss_pred             cEEEEEEcCCCCEEEEec-ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCC-cccccc----
Q 014005           34 IVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE-PEFDYL----  107 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~-~~~~~~----  107 (432)
                      .-..++++++++.|.++. ..+.|+++|..++...                            ++.+-. ..+++-    
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~----------------------------tlag~G~~g~~~~gg~~  676 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVR----------------------------TLAGNGTKGSDYQGGKK  676 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE----------------------------EEeccCcccCCCCCChh
Confidence            357788999888665554 4567999998765421                            111100 000000    


Q ss_pred             chhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccc-cccccccccccccccCCCCCcce
Q 014005          108 KSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS-SENTLLAEKNFMNEHNPPSFAHG  185 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~  185 (432)
                      .....-..-..+++  +| ++..+++.+.++.|++||..++....+.......... .......-.....+++++++..+
T Consensus       677 ~~~~~ln~P~gVa~--dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~L  754 (1057)
T PLN02919        677 GTSQVLNSPWDVCF--EPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKEL  754 (1057)
T ss_pred             hhHhhcCCCeEEEE--ecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEE
Confidence            00000023357889  77 5666666678899999999877644332110000000 00000001234568888988755


Q ss_pred             ecceeeccceEEEEeeccccccee----------eEEee-------cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCC
Q 014005          186 YHLEWTENMATKIANVGNSVHARC----------QKVYP-------HAHDFNINSISNNSDCETFVSA-DDLRINLWNLE  247 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~----------~~~~~-------~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~  247 (432)
                      +.... .++.|++||+........          ...+.       .........++++++|+.+++- .++.|++||.+
T Consensus       755 YVADs-~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~  833 (1057)
T PLN02919        755 YIADS-ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA  833 (1057)
T ss_pred             EEEEC-CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence            54332 267999999874211000          00000       0011235688999999877777 89999999998


Q ss_pred             CCCceeeEeecCCC------CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          248 ISDQCFNIVDMKPS------NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       248 ~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                       ++....+......      ...+.-.....++++++| +++++-+.++.|++||+++++.
T Consensus       834 -tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        834 -TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             -CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCcc
Confidence             4443332210000      011223457899999999 8888888999999999998764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.63  E-value=5.9e-06  Score=69.36  Aligned_cols=199  Identities=14%  Similarity=0.184  Sum_probs=107.6

Q ss_pred             EEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhc
Q 014005           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (432)
Q Consensus        35 V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  114 (432)
                      =+.++||||+.+||.+...|+|+++|+.+....                  ...|.    ..+.         ..  ...
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf------------------~I~p~----~~~~---------~d--~~~   92 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF------------------VIPPA----MSFP---------GD--LSD   92 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeE------------------EcCcc----cccC---------Cc--ccc
Confidence            356899999999999999999999999875432                  00010    0000         01  116


Q ss_pred             ceeEEEEEEcCC----CCEEEEEeCCCeEEEEEccCcc---eeee--eec-CCCCccccccccccccccccccCCCCCcc
Q 014005          115 KINRVRWCAAPN----GSMFILSTNDKTIKLWKVRDQK---VKKI--KEM-DHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       115 ~v~~l~~~~s~~----~~~l~s~~~d~~i~iwd~~~~~---~~~~--~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                      .|-.+.|+....    ...|++-..+|.++-+-+..+.   -...  ..+ ...+           ..|.++.++|....
T Consensus        93 Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp-----------~Gi~~~vy~p~h~L  161 (282)
T PF15492_consen   93 AIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP-----------HGINSAVYHPKHRL  161 (282)
T ss_pred             ceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC-----------CceeEEEEcCCCCE
Confidence            677777753111    2245666677877777764321   1111  111 1123           57788888888777


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEE--EE-cCCe------EEEEeCCCCCceeeE
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV--SA-DDLR------INLWNLEISDQCFNI  255 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~--~~-~d~~------i~lwd~~~~~~~~~~  255 (432)
                      ++.|+...+.. ...               .+....+++-.+-.+..+.-  +. .|+.      ..+|.+- +   ++.
T Consensus       162 LlVgG~~~~~~-~~s---------------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~-~---~~~  221 (282)
T PF15492_consen  162 LLVGGCEQNQD-GMS---------------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIP-S---FKF  221 (282)
T ss_pred             EEEeccCCCCC-ccc---------------cccccCceEEEEcCCCCcEEEccccCccccccccccceeecc-c---eee
Confidence            77665422100 000               11122232322222222111  11 1211      1222222 1   111


Q ss_pred             eecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       256 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      +.    ........|..+..|||| +.||+...+|.|.+|++.+-++
T Consensus       222 fs----~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  222 FS----RQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             ee----ccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence            10    002235679999999999 9999999999999999986543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.63  E-value=7.2e-06  Score=73.88  Aligned_cols=194  Identities=11%  Similarity=0.041  Sum_probs=126.3

Q ss_pred             cceeEEEEEEcCCCCEEEE-----EeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          114 EKINRVRWCAAPNGSMFIL-----STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                      ..|...+|+|-.++..|+.     ....+.+++|.+..+.......+..             -.-..+.|.+.+.++..-
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk-------------~~~~qLkW~~~g~~ll~l  240 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK-------------VSGVQLKWQVLGKYLLVL  240 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe-------------ecccEEEEecCCceEEEE
Confidence            5677788854334444544     3567889999997655333222211             112235667777766543


Q ss_pred             eee---------ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEE--EE-cCCeEEEEeCCCCCceeeEe
Q 014005          189 EWT---------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV--SA-DDLRINLWNLEISDQCFNIV  256 (432)
Q Consensus       189 ~~~---------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~--~~-~d~~i~lwd~~~~~~~~~~~  256 (432)
                      ...         +...+.++++.    ...++.. ....+.|...+|.|.++.++  +| .+..+.++|++ ++ .... 
T Consensus       241 ~~t~~ksnKsyfgesnLyl~~~~----e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr-~N-l~~~-  312 (561)
T COG5354         241 VMTHTKSNKSYFGESNLYLLRIT----ERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR-GN-LRFY-  312 (561)
T ss_pred             EEEeeecccceeccceEEEEeec----cccccee-ccccccceeeeecccCCceeEEecccccceeecccc-cc-eEEe-
Confidence            321         13467788775    2233333 35578999999999988776  45 79999999999 33 2222 


Q ss_pred             ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC---CeEEEEEccccccccccceeecccccccCCccceeeeecceeEE
Q 014005          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  333 (432)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~  333 (432)
                              .....=+.+.|+|.+ ++++.++.|   |.|-+||......+   ...+.+               ...+-+
T Consensus       313 --------~Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~~---~~~~~~---------------~n~s~~  365 (561)
T COG5354         313 --------FPEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFKV---AGAFNG---------------LNTSYC  365 (561)
T ss_pred             --------cCCcccccccccCcc-cEEEEecCCccccceEEeccCCceEE---EEEeec---------------CCceEe
Confidence                    222334678899998 888888755   68999998865543   334554               345667


Q ss_pred             EEcCCCCEEEEe-------eCCeEEEEec
Q 014005          334 KFANDGQHLLSR-------DYMNLKVFRY  355 (432)
Q Consensus       334 ~~s~dg~~l~s~-------~~~~i~iwd~  355 (432)
                      .|+|||+++.+.       -|..++|||+
T Consensus       366 ~wspd~qF~~~~~ts~k~~~Dn~i~l~~v  394 (561)
T COG5354         366 DWSPDGQFYDTDTTSEKLRVDNSIKLWDV  394 (561)
T ss_pred             eccCCceEEEecCCCcccccCcceEEEEe
Confidence            899999998763       2478999999

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.61  E-value=2.5e-05  Score=74.05  Aligned_cols=101  Identities=12%  Similarity=0.199  Sum_probs=69.1

Q ss_pred             EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEE---------EeCCCeEEEEEccccc
Q 014005          232 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY---------SSSRGFVRLVDMRQSA  301 (432)
Q Consensus       232 ~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~---------~~~dg~i~iwd~~~~~  301 (432)
                      .+|.| ..|+|.++|+. ++...+.+       .-|++.|.++.|--.. .++-.         ++.-+.+.+-|+++|.
T Consensus       439 LvAvGT~sGTV~vvdvs-t~~v~~~f-------svht~~VkgleW~g~s-slvSfsys~~n~~sg~vrN~l~vtdLrtGl  509 (1062)
T KOG1912|consen  439 LVAVGTNSGTVDVVDVS-TNAVAASF-------SVHTSLVKGLEWLGNS-SLVSFSYSHVNSASGGVRNDLVVTDLRTGL  509 (1062)
T ss_pred             eEEeecCCceEEEEEec-chhhhhhh-------cccccceeeeeeccce-eEEEeeeccccccccceeeeEEEEEccccc
Confidence            45566 77777777777 44444433       6788889999987654 33322         2233467888999987


Q ss_pred             cccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          302 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       302 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                      -     +.|++ ...+.        ..+|..+..|..|+||+.. .+.-+.+||+
T Consensus       510 s-----k~fR~-l~~~d--------espI~~irvS~~~~yLai~Fr~~plEiwd~  550 (1062)
T KOG1912|consen  510 S-----KRFRG-LQKPD--------ESPIRAIRVSSSGRYLAILFRREPLEIWDL  550 (1062)
T ss_pred             c-----ccccc-CCCCC--------cCcceeeeecccCceEEEEecccchHHHhh
Confidence            4     55553 11111        4789999999999999997 4588999999

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.60  E-value=2.1e-07  Score=54.82  Aligned_cols=38  Identities=29%  Similarity=0.799  Sum_probs=35.1

Q ss_pred             ceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 014005           92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK  143 (432)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd  143 (432)
                      +++.++++|+            +.|.+++|  +|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~------------~~i~~i~~--~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHS------------SSINSIAW--SPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSS------------SSEEEEEE--ETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCC------------CcEEEEEE--ecccccceeeCCCCEEEEEC
Confidence            3567899999            99999999  88999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=2.4e-06  Score=74.58  Aligned_cols=251  Identities=7%  Similarity=-0.007  Sum_probs=134.8

Q ss_pred             ccCCCcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           29 LQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ..|...|..++|||..+ +|..++.+..|+|.|+++....                           .++..+       
T Consensus       190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v---------------------------ssy~a~-------  235 (463)
T KOG1645|consen  190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV---------------------------SSYIAY-------  235 (463)
T ss_pred             cccchhhhhhccCccccceeeeeccCceEEEEecccceee---------------------------eheecc-------
Confidence            45677899999999887 7888999999999999986532                           444444       


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcce---eeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV---KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                            ..+++++|.- .+.+++..|...|.|.+||++..+-   ........             .+|..++.-+..+.
T Consensus       236 ------~~~wSC~wDl-de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~-------------~pv~~i~~~~~n~~  295 (463)
T KOG1645|consen  236 ------NQIWSCCWDL-DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTI-------------NPVHKIAPVQPNKI  295 (463)
T ss_pred             ------CCceeeeecc-CCcceeEEeccCceEEEEEccCCCchHhhhhhhhcc-------------CcceeecccCcccc
Confidence                  5789999942 3456777888899999999986541   11111111             22333333222222


Q ss_pred             eecceeec--cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEE-EE-cCC------eEEEE-eCCCCCcee
Q 014005          185 GYHLEWTE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDL------RINLW-NLEISDQCF  253 (432)
Q Consensus       185 ~~~~~~~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~-~d~------~i~lw-d~~~~~~~~  253 (432)
                      ...++...  ...+..|++... ......+.+.+..+...+++..+-.+.++ +. .+-      .+-.. |-. .+..+
T Consensus       296 f~~gglLv~~lt~l~f~ei~~s-~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~-dG~pV  373 (463)
T KOG1645|consen  296 FTSGGLLVFALTVLQFYEIVFS-AECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFR-DGFPV  373 (463)
T ss_pred             ccccceEEeeehhhhhhhhhcc-ccCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccc-cCcee
Confidence            22222211  123445554422 11111111123455566666666444444 33 321      11110 000 11111


Q ss_pred             eEeecCCCCcCCCCc---ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecce
Q 014005          254 NIVDMKPSNMDDLTE---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (432)
Q Consensus       254 ~~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v  330 (432)
                      -.  .++..+.....   .-..+.-.+++.-++.+++..+.+.+||..+.+.    ++.+.-              ..+|
T Consensus       374 c~--~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev----vQ~l~~--------------~epv  433 (463)
T KOG1645|consen  374 CG--KRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV----VQTLAL--------------SEPV  433 (463)
T ss_pred             ee--ecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhe----eeeccc--------------Ccce
Confidence            00  00000000000   0011222345423444566778999999999886    577766              4678


Q ss_pred             eEEEEcCC--CCEEEEeeCCeEEEEec
Q 014005          331 SDIKFAND--GQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       331 ~~~~~s~d--g~~l~s~~~~~i~iwd~  355 (432)
                      .+++...-  +.||+.-.|..++||..
T Consensus       434 ~Dicp~~~n~~syLa~LTd~~v~Iyk~  460 (463)
T KOG1645|consen  434 LDICPNDTNGSSYLALLTDDRVHIYKN  460 (463)
T ss_pred             eecceeecCCcchhhheecceEEEEec
Confidence            77766542  56888878888888864

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.57  E-value=2.7e-07  Score=54.34  Aligned_cols=32  Identities=34%  Similarity=0.403  Sum_probs=31.1

Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd  296 (432)
                      .+|.+.|++++|+|++ ++|++++.|+.|++||
T Consensus         8 ~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    8 RGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             ESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             cCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            8999999999999998 9999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.55  E-value=1.3e-06  Score=71.87  Aligned_cols=144  Identities=16%  Similarity=0.127  Sum_probs=88.5

Q ss_pred             cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEc------CCeEEEEeCCCCCceeeEe
Q 014005          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSAD------DLRINLWNLEISDQCFNIV  256 (432)
Q Consensus       183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------d~~i~lwd~~~~~~~~~~~  256 (432)
                      .-+.++..  ||.+.+.+.+..  .+..+.. ......-.+.+....++.+.++.      -+..+.|+++ ....+.  
T Consensus       102 t~V~~~~~--dg~~~v~s~~~~--~~~~~~i-~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~-p~~t~~--  173 (319)
T KOG4714|consen  102 NRVCIGYA--DGSLAVFSTDKD--LALMSRI-PSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLD-PIKTLI--  173 (319)
T ss_pred             CceEecCC--CceEEEEechHH--Hhhhhhc-ccccccccccceeecccEEecCCcceEeeccceeeeccc-cccccc--
Confidence            34444444  788888877631  1111111 11111222333444555555543      3345566666 221111  


Q ss_pred             ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc
Q 014005          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (432)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s  336 (432)
                         +. .... ..|.+++-+|...+++++|+.||.+-+||+|....+   ...+..|             +.+++.+-|+
T Consensus       174 ---~~-~~~~-~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---~S~l~ah-------------k~~i~eV~FH  232 (319)
T KOG4714|consen  174 ---PS-KKAL-DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---VSLLKAH-------------KAEIWEVHFH  232 (319)
T ss_pred             ---cc-cccc-ccchhhhCCcccccEEEEecCCCeEEEEEcccccch---HHHHHHh-------------hhhhhheecc
Confidence               00 0112 239999999987678889999999999999987543   5667776             8899999999


Q ss_pred             CC-CCEEEEe-eCCeEEEEec
Q 014005          337 ND-GQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       337 ~d-g~~l~s~-~~~~i~iwd~  355 (432)
                      |. +..|+++ .||.+.-||-
T Consensus       233 pk~p~~Lft~sedGslw~wda  253 (319)
T KOG4714|consen  233 PKNPEHLFTCSEDGSLWHWDA  253 (319)
T ss_pred             CCCchheeEecCCCcEEEEcC
Confidence            95 6677776 5599999998

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=3.3e-05  Score=70.46  Aligned_cols=232  Identities=9%  Similarity=0.089  Sum_probs=142.1

Q ss_pred             EEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcc
Q 014005           36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (432)
Q Consensus        36 ~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (432)
                      +-+.|||-|.||+|--.- -|.+|--++-.                           .++.| .|             ..
T Consensus       214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~---------------------------r~~RF-~H-------------p~  251 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFD---------------------------RIQRF-YH-------------PG  251 (698)
T ss_pred             eeEEecCCceEEEEEecc-ceeeecCccHH---------------------------HHHhc-cC-------------CC
Confidence            558899999999997664 58899643321                           11122 24             35


Q ss_pred             eeEEEEEEcCCCCEEEEEeC-----------CCeEEEEEccCcceeeeeecCCCCcccccccccccccc-ccccCCCCCc
Q 014005          116 INRVRWCAAPNGSMFILSTN-----------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF-MNEHNPPSFA  183 (432)
Q Consensus       116 v~~l~~~~s~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~  183 (432)
                      |.-+.|  ||+.++|+|-+.           ...+.|||+.+|.+++.......+           ..+ --..|+.+.+
T Consensus       252 Vq~idf--SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~-----------~~~WP~frWS~DdK  318 (698)
T KOG2314|consen  252 VQFIDF--SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP-----------YLKWPIFRWSHDDK  318 (698)
T ss_pred             ceeeec--CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC-----------ccccceEEeccCCc
Confidence            788899  899999998642           257999999999865433221111           111 1256888888


Q ss_pred             ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--c----CCeEEEEeCCCCCceeeEee
Q 014005          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D----DLRINLWNLEISDQCFNIVD  257 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~----d~~i~lwd~~~~~~~~~~~~  257 (432)
                      +++....   ..+.||+...   ...+-. +.-.-..|....|+|.++.||.-  .    -..+.+-.+. .++.+++. 
T Consensus       319 y~Arm~~---~sisIyEtps---f~lld~-Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evP-s~~~iRt~-  389 (698)
T KOG2314|consen  319 YFARMTG---NSISIYETPS---FMLLDK-KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVP-SKREIRTK-  389 (698)
T ss_pred             eeEEecc---ceEEEEecCc---eeeecc-cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecC-ccceeeec-
Confidence            8877653   5677777651   111100 01234578889999999888843  2    2345556665 34444432 


Q ss_pred             cCCCCcCCCCcceEEEEEcCCCCcEEEEEe----------CCCeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005          258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (432)
Q Consensus       258 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  327 (432)
                            .-+.-.-..+-|-.+| .+|+.--          .-..+.|+.++.....   +..+.-              .
T Consensus       390 ------nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp---ve~vel--------------k  445 (698)
T KOG2314|consen  390 ------NLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP---VEVVEL--------------K  445 (698)
T ss_pred             ------cceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCC---ceeeec--------------c
Confidence                  2222222345566666 5655421          1124667777755443   444444              5


Q ss_pred             cceeEEEEcCCCCEEEE--eeC--CeEEEEec
Q 014005          328 ASISDIKFANDGQHLLS--RDY--MNLKVFRY  355 (432)
Q Consensus       328 ~~v~~~~~s~dg~~l~s--~~~--~~i~iwd~  355 (432)
                      ..|...+|-|.|..++.  |.+  .++.+|.+
T Consensus       446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~  477 (698)
T KOG2314|consen  446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAV  477 (698)
T ss_pred             hheeeeeeccCCCeEEEEEccccccceeEEEe
Confidence            78999999999987765  544  88999988

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.55  E-value=0.00055  Score=61.60  Aligned_cols=217  Identities=9%  Similarity=0.053  Sum_probs=113.8

Q ss_pred             cCCCCEEEEEe----------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          124 APNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       124 s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      +||++.++++.          .+..|.+||..+.+...-......+.      .........+++++++++++.....++
T Consensus        54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~------~~~~~~~~~~~ls~dgk~l~V~n~~p~  127 (352)
T TIGR02658        54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR------FLVGTYPWMTSLTPDNKTLLFYQFSPS  127 (352)
T ss_pred             CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch------hhccCccceEEECCCCCEEEEecCCCC
Confidence            89999888875          47899999999987544333221110      000122346889999999998888778


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce-EE
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-TS  272 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v-~~  272 (432)
                      ..+.+.|+.   +.+.+..+.-  .+...-...+ +..+++-+.||......++..++.. .-..+  -+..-...+ ..
T Consensus       128 ~~V~VvD~~---~~kvv~ei~v--p~~~~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~--vf~~~~~~v~~r  198 (352)
T TIGR02658       128 PAVGVVDLE---GKAFVRMMDV--PDCYHIFPTA-NDTFFMHCRDGSLAKVGYGTKGNPK-IKPTE--VFHPEDEYLINH  198 (352)
T ss_pred             CEEEEEECC---CCcEEEEEeC--CCCcEEEEec-CCccEEEeecCceEEEEecCCCceE-Eeeee--eecCCccccccC
Confidence            999999998   6666666522  1112222222 2222332334444443333222211 10000  001100000 00


Q ss_pred             EEEcC-CCCcEEEEEeCCCeEEEEEcccccccc-ccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee----
Q 014005          273 AEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----  346 (432)
Q Consensus       273 ~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~----  346 (432)
                      -.|.+ ++ +.+..... |+|.+.|+....... .....+.........      ..+.+.-++++++|+.+....    
T Consensus       199 P~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~w------rP~g~q~ia~~~dg~~lyV~~~~~~  270 (352)
T TIGR02658       199 PAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGW------RPGGWQQVAYHRARDRIYLLADQRA  270 (352)
T ss_pred             CceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeecccccccccc------CCCcceeEEEcCCCCEEEEEecCCc
Confidence            14566 76 66665555 999999975433211 001222110000000      123344599999988777631    


Q ss_pred             -----C--CeEEEEec---CcceeEee
Q 014005          347 -----Y--MNLKVFRY---EPVMTLSF  363 (432)
Q Consensus       347 -----~--~~i~iwd~---~~~~~~~~  363 (432)
                           +  +.|.++|.   +.+..+..
T Consensus       271 ~~thk~~~~~V~ViD~~t~kvi~~i~v  297 (352)
T TIGR02658       271 KWTHKTASRFLFVVDAKTGKRLRKIEL  297 (352)
T ss_pred             cccccCCCCEEEEEECCCCeEEEEEeC
Confidence                 1  58999999   45555543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=2.9e-06  Score=80.49  Aligned_cols=198  Identities=11%  Similarity=0.063  Sum_probs=131.0

Q ss_pred             CccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        26 ~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      .+.+...+.++|++++  +++|+.|..+|.|++.+.....                             .+...|.    
T Consensus        33 ~~~~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-----------------------------~~~~~~s----   77 (846)
T KOG2066|consen   33 VKNFLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-----------------------------KTNFDHS----   77 (846)
T ss_pred             cHHHHhhhHHHHHHhh--cceeeeccccceEEEEecCCcc-----------------------------ccccccc----
Confidence            3345557789999987  7899999999999999976542                             1222333    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC----
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS----  181 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----  181 (432)
                              ..        ..+|.++++|+.||+|.|-.+.+.+......+.              -++..++++|+    
T Consensus        78 --------~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~--------------rpiksial~Pd~~~~  127 (846)
T KOG2066|consen   78 --------SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK--------------RPIKSIALHPDFSRQ  127 (846)
T ss_pred             --------cc--------ccCCceEEEecCCCcEEEeeccCCccceeEecC--------------CcceeEEeccchhhh
Confidence                    11        357999999999999999999887754444443              46788888887    


Q ss_pred             -CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCC
Q 014005          182 -FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP  260 (432)
Q Consensus       182 -~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~  260 (432)
                       .+..++|+.  .| +.++.-+.......+ .+ ....+.|.++.|  .|+++|-++|-.|++||+. .++.+..++...
T Consensus       128 ~sk~fv~GG~--ag-lvL~er~wlgnk~~v-~l-~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~-~~~~l~~i~~p~  199 (846)
T KOG2066|consen  128 QSKQFVSGGM--AG-LVLSERNWLGNKDSV-VL-SEGEGPIHSIKW--RGNLIAWANDDGVKVYDTP-TRQRLTNIPPPS  199 (846)
T ss_pred             hhhheeecCc--ce-EEEehhhhhcCccce-ee-ecCccceEEEEe--cCcEEEEecCCCcEEEecc-ccceeeccCCCC
Confidence             445566655  44 666654422122222 23 567889999999  4678888878889999999 555544331111


Q ss_pred             CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccc
Q 014005          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  300 (432)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~  300 (432)
                       ...........+.|.++.  .|+.| ...+|+|..++.+
T Consensus       200 -~~~R~e~fpphl~W~~~~--~LVIG-W~d~v~i~~I~~~  235 (846)
T KOG2066|consen  200 -QSVRPELFPPHLHWQDED--RLVIG-WGDSVKICSIKKR  235 (846)
T ss_pred             -CCCCcccCCCceEecCCC--eEEEe-cCCeEEEEEEecc
Confidence             111112234567888875  44445 4458999998843

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=1.9e-05  Score=75.73  Aligned_cols=232  Identities=13%  Similarity=0.146  Sum_probs=140.1

Q ss_pred             hhhhhhhhcCCCCCccccCCC-cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCc
Q 014005           13 EWKCSQAFGERNPDEELQDVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY   91 (432)
Q Consensus        13 ~w~~~~~~~~~~~~~~~~h~~-~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   91 (432)
                      -|+=-+.|..+.......-.+ .|+|  +++.+..++.|+.+|.|.+.+-.-                            
T Consensus         5 qWrrF~lFq~~~i~~~~~~~G~~isc--~~s~~~~vvigt~~G~V~~Ln~s~----------------------------   54 (933)
T KOG2114|consen    5 QWRRFSLFQWKEIPSLENFVGNAISC--CSSSTGSVVIGTADGRVVILNSSF----------------------------   54 (933)
T ss_pred             hcceeeeeeeeecCCcccCCCCceeE--EcCCCceEEEeeccccEEEecccc----------------------------
Confidence            354444444333322222223 5665  458888999999999888776432                            


Q ss_pred             ceeeeeecCCccccccchhhhhcc-eeEEEEEEcCCCCEEEEEeCCC-----eEEEEEccCcc----eeeeeecCCCCcc
Q 014005           92 RYKTEFQSHEPEFDYLKSLEIEEK-INRVRWCAAPNGSMFILSTNDK-----TIKLWKVRDQK----VKKIKEMDHFPFV  161 (432)
Q Consensus        92 ~~~~~~~~h~~~~~~~~~~~~~~~-v~~l~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~~----~~~~~~~~~~~~~  161 (432)
                      ..+..+++++            .. |..+..  ..+..+|++-+.|+     .+++|+++.-+    ...+..+...   
T Consensus        55 ~~~~~fqa~~------------~siv~~L~~--~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~---  117 (933)
T KOG2114|consen   55 QLIRGFQAYE------------QSIVQFLYI--LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIF---  117 (933)
T ss_pred             eeeehheecc------------hhhhhHhhc--ccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeee---
Confidence            2335677776            55 333333  22334666655554     59999996432    1111111000   


Q ss_pred             ccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe
Q 014005          162 SSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR  240 (432)
Q Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~  240 (432)
                       .........++..++.+.+-..++.|..  +|.|..+.-+..........+.....++|+.+++..++..++.. .-..
T Consensus       118 -~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~--nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~  194 (933)
T KOG2114|consen  118 -TIKNPTNPSPASSLAVSEDLKTIVCGFT--NGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQ  194 (933)
T ss_pred             -ccCCCCCCCcceEEEEEccccEEEEEec--CcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecce
Confidence             0011112366777888888888888888  99988886442212222233324567799999999988874444 7778


Q ss_pred             EEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccc
Q 014005          241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  303 (432)
Q Consensus       241 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~  303 (432)
                      |.+|.+.........+       ..|....+|..+++.. ..|++|+. .-+.+||....+.|
T Consensus       195 V~~y~l~gr~p~~~~l-------d~~G~~lnCss~~~~t-~qfIca~~-e~l~fY~sd~~~~c  248 (933)
T KOG2114|consen  195 VMLYSLSGRTPSLKVL-------DNNGISLNCSSFSDGT-YQFICAGS-EFLYFYDSDGRGPC  248 (933)
T ss_pred             eEEEEecCCCcceeee-------ccCCccceeeecCCCC-ccEEEecC-ceEEEEcCCCccee
Confidence            9999998222123333       6777889999999876 54665654 46999998866654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.50  E-value=1.3e-07  Score=90.14  Aligned_cols=188  Identities=7%  Similarity=0.107  Sum_probs=130.2

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      ...+|++|  +.+.+.|+.|+..|.|+++++.+|..  ....+.|.           +.++.+..+.++....+.+....
T Consensus      1102 ~~fTc~af--s~~~~hL~vG~~~Geik~~nv~sG~~--e~s~ncH~-----------SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1102 ALFTCIAF--SGGTNHLAVGSHAGEIKIFNVSSGSM--EESVNCHQ-----------SAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred             cceeeEEe--ecCCceEEeeeccceEEEEEccCccc--cccccccc-----------cccccccccCCcceeeeeccccC
Confidence            78899999  78889999999999999999999873  33455555           78888888889888877665434


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (432)
                      -...+|++..  .....++| .    .-.++.|+.....-+.| ......+||++ +...+.++ +.  ...+.+..-+.
T Consensus      1167 PlsaLW~~~s--~~~~~Hsf-~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvq-T~~~l~ty-lt--~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1167 PLSALWDASS--TGGPRHSF-D----EDKAVKFSNSLQFRALGTEADDALLYDVQ-TCSPLQTY-LT--DTVTSSYSNNL 1235 (1516)
T ss_pred             chHHHhcccc--ccCccccc-c----ccceeehhhhHHHHHhcccccceEEEecc-cCcHHHHh-cC--cchhhhhhccc
Confidence            4677898874  44555555 1    34567888776666666 66778899999 44444332 00  01122223477


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEE
Q 014005          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKV  352 (432)
Q Consensus       273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~i  352 (432)
                      ..|+|+. .+++   .||.  +||.|..+.    ++.|..              ..--..-.|+|.|.-++.-+.    |
T Consensus      1236 a~FsP~D-~LIl---ndGv--LWDvR~~~a----Ih~FD~--------------ft~~~~G~FHP~g~eVIINSE----I 1287 (1516)
T KOG1832|consen 1236 AHFSPCD-TLIL---NDGV--LWDVRIPEA----IHRFDQ--------------FTDYGGGGFHPSGNEVIINSE----I 1287 (1516)
T ss_pred             cccCCCc-ceEe---eCce--eeeeccHHH----Hhhhhh--------------heecccccccCCCceEEeech----h
Confidence            8999998 7776   6764  899997654    456654              122234579999988887653    7


Q ss_pred             Eec
Q 014005          353 FRY  355 (432)
Q Consensus       353 wd~  355 (432)
                      ||+
T Consensus      1288 wD~ 1290 (1516)
T KOG1832|consen 1288 WDM 1290 (1516)
T ss_pred             hhh
Confidence            887

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.50  E-value=9.1e-05  Score=73.96  Aligned_cols=240  Identities=13%  Similarity=0.096  Sum_probs=133.6

Q ss_pred             CcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  112 (432)
                      +.|.++.|..++.-++.+..+|.|.+-|.++...                             .+-|..           
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------------------------eivg~v-----------  108 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-----------------------------EIVGNV-----------  108 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccce-----------------------------eeeeec-----------
Confidence            5899999999999899999999999998877542                             222322           


Q ss_pred             hcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      +..|.+++|  +||++.++..+.++++.+-.-. -.  .+.....+.+.      .+.+....+-|-...+.+-..    
T Consensus       109 d~GI~aasw--S~Dee~l~liT~~~tll~mT~~-f~--~i~E~~L~~d~------~~~sk~v~VGwGrkeTqfrgs----  173 (1265)
T KOG1920|consen  109 DNGISAASW--SPDEELLALITGRQTLLFMTKD-FE--PIAEKPLDADD------ERKSKFVNVGWGRKETQFRGS----  173 (1265)
T ss_pred             cCceEEEee--cCCCcEEEEEeCCcEEEEEecc-cc--chhcccccccc------ccccccceecccccceeeecc----
Confidence            178999999  9999999999888877764321 11  11100000000      000111111121111000000    


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-----cC-CeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----DD-LRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-----~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      .|.....+...  ..+....  ....+.=.++.|--||+++|+.     .+ ..|++||.+  +..-.+-       ...
T Consensus       174 ~gr~~~~~~~~--~ek~~~~--~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE--g~Lns~s-------e~~  240 (1265)
T KOG1920|consen  174 EGRQAARQKIE--KEKALEQ--IEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE--GALNSTS-------EPV  240 (1265)
T ss_pred             hhhhccccccc--ccccccc--hhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc--chhhccc-------Ccc
Confidence            00000000000  0000000  0122334578999999999973     24 799999988  3221110       222


Q ss_pred             CcceEEEEEcCCCCcEEEEEe---CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005          267 TEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  343 (432)
                      .+-=.+++|-|.| .++|+-.   +|+.|.+|.-+ |-.-    ..|.- +.        +.....+..++|+.++..||
T Consensus       241 ~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErN-GL~h----g~f~l-~~--------p~de~~ve~L~Wns~sdiLA  305 (1265)
T KOG1920|consen  241 EGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERN-GLRH----GEFVL-PF--------PLDEKEVEELAWNSNSDILA  305 (1265)
T ss_pred             cccccceeecCCC-CeEeeeeecCCCCcEEEEecC-Cccc----ccccc-CC--------cccccchheeeecCCCCcee
Confidence            2334578999998 8888753   56679999844 4321    11111 00        01134499999999999999


Q ss_pred             E---eeC-CeEEEEec
Q 014005          344 S---RDY-MNLKVFRY  355 (432)
Q Consensus       344 s---~~~-~~i~iwd~  355 (432)
                      .   ... ..|++|-+
T Consensus       306 v~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  306 VVTSNLENSLVQLWTT  321 (1265)
T ss_pred             eeecccccceEEEEEe
Confidence            7   333 55999988

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.43  E-value=0.0003  Score=65.50  Aligned_cols=258  Identities=12%  Similarity=0.029  Sum_probs=133.0

Q ss_pred             CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEE
Q 014005           44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA  123 (432)
Q Consensus        44 g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~  123 (432)
                      +..+++++.+|.+..+|..+++..                           ..+....            .......   
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~---------------------------W~~~~~~------------~~~~~p~---  102 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRL---------------------------WRVDLDE------------RLSGGVG---  102 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEe---------------------------eeecCCC------------CcccceE---
Confidence            667888888999999998887643                           2222111            1011122   


Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecc
Q 014005          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  203 (432)
Q Consensus       124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~  203 (432)
                       .++..++.++.++.+..+|..+++..-.....              +.+...... .+..++.+..  ++.+..+|.+ 
T Consensus       103 -v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--------------~~~~~~p~v-~~~~v~v~~~--~g~l~a~d~~-  163 (377)
T TIGR03300       103 -ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS--------------SEVLSPPLV-ANGLVVVRTN--DGRLTALDAA-  163 (377)
T ss_pred             -EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC--------------ceeecCCEE-ECCEEEEECC--CCeEEEEEcC-
Confidence             24667888888999999999888754322221              111100000 1223333333  7888888887 


Q ss_pred             cccceeeEEeecCCCCCe-----eEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC--cc---e-E
Q 014005          204 SVHARCQKVYPHAHDFNI-----NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EV---I-T  271 (432)
Q Consensus       204 ~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~--~~---v-~  271 (432)
                        +++.+..+ ......+     .+.... + ..++.+ .++.+..+|.+ +++.+........  .+..  ..   + .
T Consensus       164 --tG~~~W~~-~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~-tG~~~W~~~~~~~--~g~~~~~~~~~~~~  235 (377)
T TIGR03300       164 --TGERLWTY-SRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQ-TGQPLWEQRVALP--KGRTELERLVDVDG  235 (377)
T ss_pred             --CCceeeEE-ccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEcc-CCCEeeeeccccC--CCCCchhhhhccCC
Confidence              55554444 1111111     011111 2 366677 88999999998 5554432211000  0000  00   0 1


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeE
Q 014005          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNL  350 (432)
Q Consensus       272 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i  350 (432)
                      +..+  .+ ..++.++.+|.+..+|..+|+..    -....               ........  ++..+..+ .+|.+
T Consensus       236 ~p~~--~~-~~vy~~~~~g~l~a~d~~tG~~~----W~~~~---------------~~~~~p~~--~~~~vyv~~~~G~l  291 (377)
T TIGR03300       236 DPVV--DG-GQVYAVSYQGRVAALDLRSGRVL----WKRDA---------------SSYQGPAV--DDNRLYVTDADGVV  291 (377)
T ss_pred             ccEE--EC-CEEEEEEcCCEEEEEECCCCcEE----Eeecc---------------CCccCceE--eCCEEEEECCCCeE
Confidence            1112  23 56777888999999999988752    22211               11112222  24455544 45999


Q ss_pred             EEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005          351 KVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       351 ~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                      ..+|.   +.+........      .....+..   ..   -.+..++.+|.+.+++..
T Consensus       292 ~~~d~~tG~~~W~~~~~~~------~~~ssp~i---~g---~~l~~~~~~G~l~~~d~~  338 (377)
T TIGR03300       292 VALDRRSGSELWKNDELKY------RQLTAPAV---VG---GYLVVGDFEGYLHWLSRE  338 (377)
T ss_pred             EEEECCCCcEEEccccccC------CccccCEE---EC---CEEEEEeCCCEEEEEECC
Confidence            99998   22222211000      00011110   11   146677889999999843

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.37  E-value=9.1e-06  Score=68.72  Aligned_cols=173  Identities=12%  Similarity=0.164  Sum_probs=106.5

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCccccccccccccccccccCCCCCccee-cceee
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY-HLEWT  191 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~  191 (432)
                      .-|+++++  +.|.+.++++. |=.|.+|+++-.. .-.+.....+.      -..-..-|++..|+|....+. -.+. 
T Consensus       173 yhiNSiS~--NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~n------meeLteVItSaeFhp~~cn~fmYSsS-  242 (460)
T COG5170         173 YHINSISF--NSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHN------MEELTEVITSAEFHPEMCNVFMYSSS-  242 (460)
T ss_pred             eEeeeeee--cCchheeeecc-ceeeeeccccccCCceEEEeccCcc------HHHHHHHHhhcccCHhHcceEEEecC-
Confidence            78999999  77887777774 6789999986432 11111111111      000124566777887644332 2222 


Q ss_pred             ccceEEEEeecccccce-eeEEe-----------ecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecC
Q 014005          192 ENMATKIANVGNSVHAR-CQKVY-----------PHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMK  259 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~-~~~~~-----------~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~  259 (432)
                       .|.|++-|++...... ..+.+           ..+-...|..+.|+++|+++++-+--++++||.+....++.++++.
T Consensus       243 -kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         243 -KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             -CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechH
Confidence             7899999988421100 00111           0223457889999999999998888899999999878888876332


Q ss_pred             CCCcC-----CCCcc---eEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005          260 PSNMD-----DLTEV---ITSAEFHPIYCNLLAYSSSRGFVRLVDMR  298 (432)
Q Consensus       260 ~~~~~-----~~~~~---v~~~~~~p~~~~~l~~~~~dg~i~iwd~~  298 (432)
                      ..-+.     --...   -..+.|+-|. ..+++|+..+..-+|-..
T Consensus       322 ~~l~~~l~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         322 CDLMDELNDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             HHHHHHHHhhhhccceeeeEEEEecCCc-ccccccccccceeeeccc
Confidence            11000     00112   2457788887 888889888877777643

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.35  E-value=0.00058  Score=59.37  Aligned_cols=212  Identities=14%  Similarity=0.085  Sum_probs=125.7

Q ss_pred             cceeEEEEEEcC-CCCEEEEEeCCC-eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          114 EKINRVRWCAAP-NGSMFILSTNDK-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       114 ~~v~~l~~~~s~-~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                      .....++.  +| ....++.+-.-| ...+||..+++......-....           --.---.|++++.++++....
T Consensus         5 ~RgH~~a~--~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR-----------HFyGHg~fs~dG~~LytTEnd   71 (305)
T PF07433_consen    5 ARGHGVAA--HPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR-----------HFYGHGVFSPDGRLLYTTEND   71 (305)
T ss_pred             ccccceee--CCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC-----------EEecCEEEcCCCCEEEEeccc
Confidence            44556777  66 455666676554 4778999888754433221111           112235789999999887542


Q ss_pred             c---cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcC--------CeEEEEeCCCCCceeeEeecCC
Q 014005          192 E---NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD--------LRINLWNLEISDQCFNIVDMKP  260 (432)
Q Consensus       192 ~---~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d--------~~i~lwd~~~~~~~~~~~~~~~  260 (432)
                      .   .|.|-|||...  .-+.+..+ ..+.-....+.+.|||+.|+++..        |..++ +++++...+..++...
T Consensus        72 ~~~g~G~IgVyd~~~--~~~ri~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~s  147 (305)
T PF07433_consen   72 YETGRGVIGVYDAAR--GYRRIGEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARS  147 (305)
T ss_pred             cCCCcEEEEEEECcC--CcEEEeEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCC
Confidence            2   67999999983  34455556 666667788999999988887632        22222 2332222222221111


Q ss_pred             C------Cc--CCCCcceEEEEEcCCCCcEEEEEeCCC-------eEEEEEccccccccccceeecccccccCCccceee
Q 014005          261 S------NM--DDLTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (432)
Q Consensus       261 ~------~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  325 (432)
                      .      .+  ..|...|+.++++++| ..++..-..|       .+.+++..  +.    +..+.. +     ......
T Consensus       148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g--~~----~~~~~~-p-----~~~~~~  214 (305)
T PF07433_consen  148 GALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRG--GA----LRLLPA-P-----EEQWRR  214 (305)
T ss_pred             CceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCC--Cc----ceeccC-C-----hHHHHh
Confidence            1      22  3467789999999998 6665544443       23333322  11    122221 0     001111


Q ss_pred             eecceeEEEEcCCCCEEEEeeC--CeEEEEec
Q 014005          326 IIASISDIKFANDGQHLLSRDY--MNLKVFRY  355 (432)
Q Consensus       326 ~~~~v~~~~~s~dg~~l~s~~~--~~i~iwd~  355 (432)
                      ..+.+-+++++++|.+++..+-  +++.+||.
T Consensus       215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~  246 (305)
T PF07433_consen  215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA  246 (305)
T ss_pred             hCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence            2468999999999998876533  99999999

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.29  E-value=7.4e-05  Score=69.22  Aligned_cols=127  Identities=17%  Similarity=0.187  Sum_probs=83.0

Q ss_pred             EEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEE
Q 014005          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  274 (432)
Q Consensus       196 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  274 (432)
                      -.+|++... ..+++....-.....+.+.+++|+...++.| .||+|.+||.. .+....         ....-.++.++
T Consensus       238 ~ciYE~~r~-klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~-~~~t~~---------~ka~~~P~~ia  306 (545)
T PF11768_consen  238 SCIYECSRN-KLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTT-RGVTLL---------AKAEFIPTLIA  306 (545)
T ss_pred             EEEEEeecC-ceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcC-CCeeee---------eeecccceEEE
Confidence            345555422 2333333334677899999999999999999 99999999998 332211         22234478899


Q ss_pred             EcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc-----cceeeeecceeEEEEcCCCC
Q 014005          275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-----SFFTEIIASISDIKFANDGQ  340 (432)
Q Consensus       275 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~-----~~~~~~~~~v~~~~~s~dg~  340 (432)
                      |||+| .++++|+..|.+.+||+.-+...   .+.+.+   ++.+.     +.+-.+...+..+.|++...
T Consensus       307 WHp~g-ai~~V~s~qGelQ~FD~ALspi~---~qLlsE---d~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~  370 (545)
T PF11768_consen  307 WHPDG-AIFVVGSEQGELQCFDMALSPIK---MQLLSE---DATPKSTLQLSKYFRVSSSLVHIQWAPAPQ  370 (545)
T ss_pred             EcCCC-cEEEEEcCCceEEEEEeecCccc---eeeccc---cCCCccEEeeehhccCcchhheeEeccCCC
Confidence            99999 99999999999999999865432   222222   22221     11112345677888886543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.28  E-value=6e-06  Score=70.80  Aligned_cols=125  Identities=10%  Similarity=0.113  Sum_probs=88.3

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc---eeeeeecCCCCccccccccccccccccccCCC-CCcceecce
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGYHLE  189 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~  189 (432)
                      +.|.++.|  ...+.+++.|+..|.|...|++.+.   ......+ .|           .+.|.++..-. +..++....
T Consensus       253 sDVfAlQf--~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh-----------~Ssvtslq~Lq~s~q~LmaS~  318 (425)
T KOG2695|consen  253 SDVFALQF--AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YH-----------DSSVTSLQILQFSQQKLMASD  318 (425)
T ss_pred             hhHHHHHh--cccCCeeEecccCCcEEEEEeeecccCCCcceEEE-Ec-----------CcchhhhhhhccccceEeecc
Confidence            67899999  6678899999999999999998652   1111111 12           26777776655 778888888


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCee--EEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEe
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNIN--SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV  256 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~  256 (432)
                      .  +|.|++||++....++.++.+ .+|-..-.  -+.+.+....++++ +|...++|.++ .+..+.++
T Consensus       319 M--~gkikLyD~R~~K~~~~V~qY-eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~-~ghLl~ti  384 (425)
T KOG2695|consen  319 M--TGKIKLYDLRATKCKKSVMQY-EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD-SGHLLCTI  384 (425)
T ss_pred             C--cCceeEeeehhhhcccceeee-ecccccccccccccccccceEEEccCeeEEEEEecc-cCceeecc
Confidence            8  999999999944333347777 67654322  23345556666666 99999999999 67766654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.27  E-value=1.2e-05  Score=77.41  Aligned_cols=185  Identities=12%  Similarity=0.129  Sum_probs=128.4

Q ss_pred             CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccc
Q 014005          126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV  205 (432)
Q Consensus       126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~  205 (432)
                      ++..++-|+....+..+|+.+.+..+......             +.+  .....+++++.+|..  .|+|.+-|.+   
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a-------------~~v--~imR~Nnr~lf~G~t--~G~V~LrD~~---  205 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA-------------SGV--TIMRYNNRNLFCGDT--RGTVFLRDPN---  205 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccC-------------Cce--EEEEecCcEEEeecc--cceEEeecCC---
Confidence            45567778777888888998877555444321             122  223345677888887  8999999999   


Q ss_pred             cceeeEEeecCCCCCeeEEEeCCCCCEEEEE--c--------CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEE
Q 014005          206 HARCQKVYPHAHDFNINSISNNSDCETFVSA--D--------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF  275 (432)
Q Consensus       206 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~--------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  275 (432)
                      +.+.++++ ..|.+.|.++..  .|+.|+++  +        |.-|++||+++ -+.+..+       .-+.+ ..-+.|
T Consensus       206 s~~~iht~-~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRm-mral~PI-------~~~~~-P~flrf  273 (1118)
T KOG1275|consen  206 SFETIHTF-DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRM-MRALSPI-------QFPYG-PQFLRF  273 (1118)
T ss_pred             cCceeeee-eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhh-hhccCCc-------ccccC-chhhhh
Confidence            78889999 899999988766  56677653  3        55689999994 3333221       22222 256789


Q ss_pred             cCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEe
Q 014005          276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFR  354 (432)
Q Consensus       276 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd  354 (432)
                      +|.-+..+++++..|...+-|..+-....  ...+.-|+.           ...+.++++|++|..||.|+. |.|.+|.
T Consensus       274 ~Psl~t~~~V~S~sGq~q~vd~~~lsNP~--~~~~~v~p~-----------~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  274 HPSLTTRLAVTSQSGQFQFVDTATLSNPP--AGVKMVNPN-----------GSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccccceEEEEecccceeeccccccCCCc--cceeEEccC-----------CCcceeEEecCCCceEEEecccCcEeeec
Confidence            99887889999999999999944321110  122222211           356999999999999999976 9999997


Q ss_pred             c
Q 014005          355 Y  355 (432)
Q Consensus       355 ~  355 (432)
                      -
T Consensus       341 ~  341 (1118)
T KOG1275|consen  341 D  341 (1118)
T ss_pred             C
Confidence            6

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.25  E-value=0.00079  Score=58.48  Aligned_cols=201  Identities=11%  Similarity=0.050  Sum_probs=118.1

Q ss_pred             EEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCC-CCCcceecceeeccce
Q 014005          118 RVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP-PSFAHGYHLEWTENMA  195 (432)
Q Consensus       118 ~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~  195 (432)
                      ++.|  .+ ++.++++-...+.|..|+..++.......                .....+++. +++.++++.    .+.
T Consensus         4 gp~~--d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~----------------~~~~G~~~~~~~g~l~v~~----~~~   61 (246)
T PF08450_consen    4 GPVW--DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL----------------PGPNGMAFDRPDGRLYVAD----SGG   61 (246)
T ss_dssp             EEEE--ETTTTEEEEEETTTTEEEEEETTTTEEEEEES----------------SSEEEEEEECTTSEEEEEE----TTC
T ss_pred             ceEE--ECCCCEEEEEEcCCCEEEEEECCCCeEEEEec----------------CCCceEEEEccCCEEEEEE----cCc
Confidence            4677  55 67677777778999999998876443221                123445555 555554443    234


Q ss_pred             EEEEeecccccceeeEEee---cC-CCCCeeEEEeCCCCCEEEEE-cC--------CeEEEEeCCCCCceeeEeecCCCC
Q 014005          196 TKIANVGNSVHARCQKVYP---HA-HDFNINSISNNSDCETFVSA-DD--------LRINLWNLEISDQCFNIVDMKPSN  262 (432)
Q Consensus       196 v~i~d~~~~~~~~~~~~~~---~~-~~~~i~~~~~~~~~~~l~~~-~d--------~~i~lwd~~~~~~~~~~~~~~~~~  262 (432)
                      +.++|..   +++......   .. .....+.+++.|+|++.++. ..        |.+..++..  ++....       
T Consensus        62 ~~~~d~~---~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~-------  129 (246)
T PF08450_consen   62 IAVVDPD---TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVV-------  129 (246)
T ss_dssp             EEEEETT---TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEE-------
T ss_pred             eEEEecC---CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEE-------
Confidence            4555776   333322221   11 45678899999999977765 32        446666655  332222       


Q ss_pred             cCCCCcceEEEEEcCCCCcEE-EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005          263 MDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (432)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~  341 (432)
                       ...-...+.++|+|++ +.| ++-+..+.|..+++..........+.+..-+          ...+..-.+++..+|++
T Consensus       130 -~~~~~~pNGi~~s~dg-~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~----------~~~g~pDG~~vD~~G~l  197 (246)
T PF08450_consen  130 -ADGLGFPNGIAFSPDG-KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP----------GGPGYPDGLAVDSDGNL  197 (246)
T ss_dssp             -EEEESSEEEEEEETTS-SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S----------SSSCEEEEEEEBTTS-E
T ss_pred             -ecCcccccceEECCcc-hheeecccccceeEEEeccccccceeeeeeEEEcC----------CCCcCCCcceEcCCCCE
Confidence             2223457899999999 655 4667788999999864321000012221100          00124778999999988


Q ss_pred             EEEee-CCeEEEEec--CcceeEeec
Q 014005          342 LLSRD-YMNLKVFRY--EPVMTLSFC  364 (432)
Q Consensus       342 l~s~~-~~~i~iwd~--~~~~~~~~~  364 (432)
                      .++.- .+.|.++|.  +.+..+..+
T Consensus       198 ~va~~~~~~I~~~~p~G~~~~~i~~p  223 (246)
T PF08450_consen  198 WVADWGGGRIVVFDPDGKLLREIELP  223 (246)
T ss_dssp             EEEEETTTEEEEEETTSCEEEEEE-S
T ss_pred             EEEEcCCCEEEEECCCccEEEEEcCC
Confidence            77753 499999999  666666655

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.23  E-value=0.00034  Score=65.46  Aligned_cols=106  Identities=8%  Similarity=0.077  Sum_probs=62.8

Q ss_pred             CeeEEEeCCCCCEEEEE--c--CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe-CCC--eE
Q 014005          220 NINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRG--FV  292 (432)
Q Consensus       220 ~i~~~~~~~~~~~l~~~--~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i  292 (432)
                      ......|+|||+.++..  .  +..|.++|+. ++.... +       ..+........|+||| +.|+..+ ..+  .|
T Consensus       234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~-~g~~~~-L-------T~~~~~d~~p~~SPDG-~~I~F~Sdr~g~~~I  303 (419)
T PRK04043        234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN-TKTLTQ-I-------TNYPGIDVNGNFVEDD-KRIVFVSDRLGYPNI  303 (419)
T ss_pred             cEEeeEECCCCCEEEEEEccCCCcEEEEEECC-CCcEEE-c-------ccCCCccCccEECCCC-CEEEEEECCCCCceE
Confidence            34456799999887754  2  4567788887 443322 2       2222223456899999 5555444 333  57


Q ss_pred             EEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eC---------CeEEEEec
Q 014005          293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY---------MNLKVFRY  355 (432)
Q Consensus       293 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~---------~~i~iwd~  355 (432)
                      .+.|+.+++.     +.+...             ...  ...|||||++|+-. ..         ..|.+.|+
T Consensus       304 y~~dl~~g~~-----~rlt~~-------------g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~  356 (419)
T PRK04043        304 FMKKLNSGSV-----EQVVFH-------------GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIST  356 (419)
T ss_pred             EEEECCCCCe-----EeCccC-------------CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEEC
Confidence            7888877664     222220             111  24899999988763 21         25666676

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.19  E-value=0.0013  Score=60.69  Aligned_cols=276  Identities=14%  Similarity=0.076  Sum_probs=133.2

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhh-------c---ccccc-c--cccC----Ccceeee
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELE-------K---QMDFT-S--TSHP----EYRYKTE   96 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-------~---~~~~~-~--~~~p----~~~~~~~   96 (432)
                      .|++++|+++..-|++|...|.|.||.....+.... +.....++       .   .+..+ +  ...|    ...+..-
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN-REQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc-cCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            589999999988899999999999999876653310 00000000       0   01100 0  0111    1223333


Q ss_pred             eecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccc
Q 014005           97 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE  176 (432)
Q Consensus        97 ~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  176 (432)
                      ++..+            ++|++++.  + |=-+++.|..+|.+.|.|+++..+........+.     ........+.++
T Consensus        82 ~~~~~------------g~vtal~~--S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~-----~~~~~~~~vt~i  141 (395)
T PF08596_consen   82 LDAKQ------------GPVTALKN--S-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESF-----LSKSSSSYVTSI  141 (395)
T ss_dssp             E---S-------------SEEEEEE----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG-------T-SS----EEEE
T ss_pred             eeccC------------CcEeEEec--C-CCcEEEEEecCCcEEEEECCCCeEEeeccccccc-----cccccccCeeEE
Confidence            34444            89999998  5 4449999999999999999877644332222200     011122344445


Q ss_pred             cCC-----CC---CcceecceeeccceEEEEeecccccc----eeeEEeecCCCCCeeEEE-eCCC-C------------
Q 014005          177 HNP-----PS---FAHGYHLEWTENMATKIANVGNSVHA----RCQKVYPHAHDFNINSIS-NNSD-C------------  230 (432)
Q Consensus       177 ~~~-----~~---~~~~~~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~~~~~i~~~~-~~~~-~------------  230 (432)
                      .|.     .+   .-.+..|+.  .|.+.+|.+.-...+    ...... ..+.+.|..+. ++.+ |            
T Consensus       142 eF~vm~~~~D~ySSi~L~vGTn--~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~  218 (395)
T PF08596_consen  142 EFSVMTLGGDGYSSICLLVGTN--SGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESALATISAMQG  218 (395)
T ss_dssp             EEEEEE-TTSSSEEEEEEEEET--TSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHG
T ss_pred             EEEEEecCCCcccceEEEEEeC--CCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcccCchhHhhc
Confidence            443     22   245566666  788888876521112    111111 24556665554 3222 1            


Q ss_pred             -------C-EEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEE-----cCCCCcEEEEEeCCCeEEEEEc
Q 014005          231 -------E-TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF-----HPIYCNLLAYSSSRGFVRLVDM  297 (432)
Q Consensus       231 -------~-~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~p~~~~~l~~~~~dg~i~iwd~  297 (432)
                             + +++++.+..++++.....+...+.+        ........+.+     ...+ ..|++-..+|.|++|.+
T Consensus       219 l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~--------~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SL  289 (395)
T PF08596_consen  219 LSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF--------DDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSL  289 (395)
T ss_dssp             GGGT----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEET
T ss_pred             cccCCCcCcEEEEEcccceEEEeCCCCcccceee--------ccccccceEEEEeecccCCc-eEEEEEECCCcEEEEEC
Confidence                   1 3444478889999888433333322        11122333444     2244 78888899999999999


Q ss_pred             cccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                      ..=+.    +..+.-. ..        .....+....++++|..+.-.+...+.++.+
T Consensus       290 P~Lke----i~~~~l~-~~--------~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv  334 (395)
T PF08596_consen  290 PSLKE----IKSVSLP-PP--------LDSRRLSSSSISRNGDIFYWTGPSEIQLFSV  334 (395)
T ss_dssp             TT--E----EEEEE-S-S-----------HHHHTT-EE-TTS-EEEE-SSSEEEEEEE
T ss_pred             CCchH----hhcccCC-Cc--------cccccccccEECCCCCEEEEeCcccEEEEEE
Confidence            86443    2333321 00        0124566788899999887655455555555

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.18  E-value=0.00021  Score=71.43  Aligned_cols=194  Identities=14%  Similarity=0.203  Sum_probs=108.8

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc-ccccCCcceeeeeecCCcc---c---
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT-STSHPEYRYKTEFQSHEPE---F---  104 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~h~~~---~---  104 (432)
                      .+.|.+++||||++.++..+.++++.+-..+- ..+...+- ..+..+....+ +-+   .+.-+.|.|....   .   
T Consensus       109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f-~~i~E~~L-~~d~~~~sk~v~VGw---GrkeTqfrgs~gr~~~~~~~  183 (1265)
T KOG1920|consen  109 DNGISAASWSPDEELLALITGRQTLLFMTKDF-EPIAEKPL-DADDERKSKFVNVGW---GRKETQFRGSEGRQAARQKI  183 (1265)
T ss_pred             cCceEEEeecCCCcEEEEEeCCcEEEEEeccc-cchhcccc-ccccccccccceecc---cccceeeecchhhhcccccc
Confidence            45799999999999999888887776654311 10000000 00000000000 000   1111122221110   0   


Q ss_pred             ---cccchhhhhcceeEEEEEEcCCCCEEEEE-----eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccc
Q 014005          105 ---DYLKSLEIEEKINRVRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE  176 (432)
Q Consensus       105 ---~~~~~~~~~~~v~~l~~~~s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  176 (432)
                         ..+...+..+.=.+|+|  ..||+++++.     ...+.|++||-+ +.+.....-.             .+.-.++
T Consensus       184 ~~ek~~~~~~~~~~~~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~-------------~~l~~~L  247 (1265)
T KOG1920|consen  184 EKEKALEQIEQDDHKTSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPV-------------EGLQHSL  247 (1265)
T ss_pred             cccccccchhhccCCceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcc-------------cccccce
Confidence               01111112233456999  8999999984     233899999987 5433322211             2445578


Q ss_pred             cCCCCCcceecceeec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE---E-cCCeEEEEeCC
Q 014005          177 HNPPSFAHGYHLEWTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS---A-DDLRINLWNLE  247 (432)
Q Consensus       177 ~~~~~~~~~~~~~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~---~-~d~~i~lwd~~  247 (432)
                      +|-|.|..+++-.... ++.|.++..+.-..+.-.-.+ ......+..++|+.++..|++   . ....|++|-+.
T Consensus       248 sWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~-p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  248 SWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF-PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             eecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC-cccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence            9999998888765533 667888887643222222222 223334899999999999997   4 55669999887

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.16  E-value=0.0011  Score=56.82  Aligned_cols=214  Identities=13%  Similarity=0.151  Sum_probs=112.4

Q ss_pred             cceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          114 EKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      ..+..|+|  +|+ +.++++....+.|...+.. |++.....+...            +....+++..++.+++....  
T Consensus        22 ~e~SGLTy--~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~------------~D~EgI~y~g~~~~vl~~Er--   84 (248)
T PF06977_consen   22 DELSGLTY--NPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGF------------GDYEGITYLGNGRYVLSEER--   84 (248)
T ss_dssp             S-EEEEEE--ETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-------------SSEEEEEE-STTEEEEEETT--
T ss_pred             CCccccEE--cCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCC------------CCceeEEEECCCEEEEEEcC--
Confidence            67999999  776 4466777778888888875 444333333221            45677788777777776544  


Q ss_pred             cceEEEEeecccc---cceeeEEee----cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCC--CCceeeEeecCC-C
Q 014005          193 NMATKIANVGNSV---HARCQKVYP----HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI--SDQCFNIVDMKP-S  261 (432)
Q Consensus       193 ~~~v~i~d~~~~~---~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~--~~~~~~~~~~~~-~  261 (432)
                      ++.+.+.++....   .....+.+.    ..+...+-.++|+|.++.|..+ ...-..++.++.  ....+....... .
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~  164 (248)
T PF06977_consen   85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD  164 (248)
T ss_dssp             TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred             CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence            6778777774221   111112221    2344568999999998888888 665556666552  122222211100 0


Q ss_pred             CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (432)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~  341 (432)
                      ........+.++.++|...++++.+..+..+-.+| .+|+.    +..+.-. ..   ...+.........++|.++|++
T Consensus       165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~----~~~~~L~-~g---~~gl~~~~~QpEGIa~d~~G~L  235 (248)
T PF06977_consen  165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRV----VSSLSLD-RG---FHGLSKDIPQPEGIAFDPDGNL  235 (248)
T ss_dssp             -HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--E----EEEEE-S-TT---GGG-SS---SEEEEEE-TT--E
T ss_pred             cccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCE----EEEEEeC-Cc---ccCcccccCCccEEEECCCCCE
Confidence            01223345889999998767888888899999999 55664    2332220 00   0000011246789999999988


Q ss_pred             EEEeeCCeEEEE
Q 014005          342 LLSRDYMNLKVF  353 (432)
Q Consensus       342 l~s~~~~~i~iw  353 (432)
                      .+++.-+..++|
T Consensus       236 YIvsEpNlfy~f  247 (248)
T PF06977_consen  236 YIVSEPNLFYRF  247 (248)
T ss_dssp             EEEETTTEEEEE
T ss_pred             EEEcCCceEEEe
Confidence            777755666655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.13  E-value=0.00045  Score=65.97  Aligned_cols=225  Identities=16%  Similarity=0.192  Sum_probs=133.9

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      .-.++.|+|.| +||.|+.. .|.+-|..+-+                           .++.+.-|+            
T Consensus        17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q---------------------------~iqsie~h~------------   55 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQ---------------------------LIQSIELHQ------------   55 (1062)
T ss_pred             cccccccCccc-eEEEecCc-eEEEEehhhhh---------------------------hhhccccCc------------
Confidence            35688999988 57777654 78888876654                           336788888            


Q ss_pred             cceeEEEEEEcCC----------CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005          114 EKINRVRWCAAPN----------GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (432)
Q Consensus       114 ~~v~~l~~~~s~~----------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  183 (432)
                      ..|+.+.|.|.|.          .-.++++...|+|.+||...+.....                               
T Consensus        56 s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~-------------------------------  104 (1062)
T KOG1912|consen   56 SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW-------------------------------  104 (1062)
T ss_pred             cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh-------------------------------
Confidence            8999999966321          12466667778899998875542111                               


Q ss_pred             ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC---CCCEEE-EE-cCCeEEEEeCCCCCceeeEeec
Q 014005          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFV-SA-DDLRINLWNLEISDQCFNIVDM  258 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~-~~-~d~~i~lwd~~~~~~~~~~~~~  258 (432)
                                                   + ..+.+.+..++|-+   +.+.++ +- ...++.+|+.. +++.+...  
T Consensus       105 -----------------------------l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd-tG~k~Wk~--  151 (1062)
T KOG1912|consen  105 -----------------------------L-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD-TGEKFWKY--  151 (1062)
T ss_pred             -----------------------------h-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc-CCceeecc--
Confidence                                         1 33444555666654   343444 44 78899999999 56655433  


Q ss_pred             CCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee---cccccccCCc-ccee----------
Q 014005          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL---RDAAESHGSK-SFFT----------  324 (432)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~h~~~~~~~-~~~~----------  324 (432)
                           ........++.++|-.++.+..-+..|.+-+-+.-.-.+.....+.|   ..|...+..+ ...+          
T Consensus       152 -----~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s  226 (1062)
T KOG1912|consen  152 -----DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS  226 (1062)
T ss_pred             -----ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence                 33445567799999776777777778887777654322222112222   2221100000 0000          


Q ss_pred             -eeecceeEEEEcCCCCEEEEeeC-CeEEEEec---CcceeEeecceee
Q 014005          325 -EIIASISDIKFANDGQHLLSRDY-MNLKVFRY---EPVMTLSFCGIYV  368 (432)
Q Consensus       325 -~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~~~~~  368 (432)
                       ...-....++|+|.-+.+.--.. ..+.++|+   .++..+.....+.
T Consensus       227 a~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~a  275 (1062)
T KOG1912|consen  227 AYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGA  275 (1062)
T ss_pred             hhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCc
Confidence             00011234678887554443333 78999999   6677776666533

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.08  E-value=0.00097  Score=62.06  Aligned_cols=182  Identities=8%  Similarity=0.034  Sum_probs=96.2

Q ss_pred             CEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC--CCcceecceeeccceEEEEeecccc
Q 014005          128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--SFAHGYHLEWTENMATKIANVGNSV  205 (432)
Q Consensus       128 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~v~i~d~~~~~  205 (432)
                      ..++.+..++.+..+|+++++..-.........      .........+.-+|  .+..++.+..  ++.+..+|..   
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g------~~~~~~~~~~~~~p~~~~~~vy~~~~--~g~l~a~d~~---  259 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG------RTELERLVDVDGDPVVDGGQVYAVSY--QGRVAALDLR---  259 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeeccccCCC------CCchhhhhccCCccEEECCEEEEEEc--CCEEEEEECC---
Confidence            367778888999999998887432211110000      00000000011111  1334444444  7888999987   


Q ss_pred             cceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEE
Q 014005          206 HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (432)
Q Consensus       206 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  284 (432)
                      +++.+... . . .......  ..+..+..+ .+|.+..+|.. +++.+...  .  .+..  ....+...  .+ ..++
T Consensus       260 tG~~~W~~-~-~-~~~~~p~--~~~~~vyv~~~~G~l~~~d~~-tG~~~W~~--~--~~~~--~~~ssp~i--~g-~~l~  324 (377)
T TIGR03300       260 SGRVLWKR-D-A-SSYQGPA--VDDNRLYVTDADGVVVALDRR-SGSELWKN--D--ELKY--RQLTAPAV--VG-GYLV  324 (377)
T ss_pred             CCcEEEee-c-c-CCccCce--EeCCEEEEECCCCeEEEEECC-CCcEEEcc--c--cccC--CccccCEE--EC-CEEE
Confidence            45544443 1 1 1111222  245567667 89999999998 55544322  0  0011  11122222  24 6788


Q ss_pred             EEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecce-eEEEEcCCCCEEEEeeCCeEEEE
Q 014005          285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLSRDYMNLKVF  353 (432)
Q Consensus       285 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v-~~~~~s~dg~~l~s~~~~~i~iw  353 (432)
                      +++.+|.+.++|..+|++    +..+..+             ...+ ....+. ++++++.+.+|.|+.|
T Consensus       325 ~~~~~G~l~~~d~~tG~~----~~~~~~~-------------~~~~~~sp~~~-~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       325 VGDFEGYLHWLSREDGSF----VARLKTD-------------GSGIASPPVVV-GDGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEeCCCEEEEEECCCCCE----EEEEEcC-------------CCccccCCEEE-CCEEEEEeCCceEEEe
Confidence            899999999999999886    4455442             1122 222333 3455555566888765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.07  E-value=2.7e-06  Score=78.78  Aligned_cols=211  Identities=15%  Similarity=0.162  Sum_probs=133.9

Q ss_pred             CCCcEEEEEEcCCC--CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        31 h~~~V~~~~fsp~g--~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ....+.|++.+-+.  .+++.|..+|.|.+-........                         -.....+|.       
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-------------------------s~E~tp~~a-------  102 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-------------------------SAEVTPGYA-------  102 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-------------------------cceeccccc-------
Confidence            35578888876544  47889999999999887654311                         001233444       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEE----eCCCeEEEEEccCcce--eeeeecCCCCccccccccccccccccccCCCCC
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILS----TNDKTIKLWKVRDQKV--KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~----~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  182 (432)
                           ...++++|.+ -|.+.||.|    -.|-.+.|||+.++-.  +....+...          .......++|..+.
T Consensus       103 -----r~Ct~lAwne-LDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~----------~l~gqns~cwlrd~  166 (783)
T KOG1008|consen  103 -----RPCTSLAWNE-LDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS----------TLDGQNSVCWLRDT  166 (783)
T ss_pred             -----cccccccccc-ccHHHHHhhhhhhcccCCccceecccccCCCccccccccc----------cccCccccccccCc
Confidence                 7889999953 456677777    3466899999987732  111111110          12445578888888


Q ss_pred             cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEEcCCeEEEEe-CCCCCceeeEeecCC
Q 014005          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSADDLRINLWN-LEISDQCFNIVDMKP  260 (432)
Q Consensus       183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~d~~i~lwd-~~~~~~~~~~~~~~~  260 (432)
                      +.+.+|..  ...+.++|++.... ++ .   .-.+..+..+.+.| .+.++++-.||.|.+|| .+.-+..+.++...+
T Consensus       167 klvlaGm~--sr~~~ifdlRqs~~-~~-~---svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~  239 (783)
T KOG1008|consen  167 KLVLAGMT--SRSVHIFDLRQSLD-SV-S---SVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNE  239 (783)
T ss_pred             chhhcccc--cchhhhhhhhhhhh-hh-h---hhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCC
Confidence            88888887  77899999873211 11 1   11233566678888 67777777999999999 432233333321111


Q ss_pred             CCcCCCCcceEEEEEcCCCCcEEEEEeCC-CeEEEEEccc
Q 014005          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDMRQ  299 (432)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~iwd~~~  299 (432)
                         ......+..++|.|....++++...| ++|+++|+..
T Consensus       240 ---N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  240 ---NKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ---CCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence               11223589999999875677776654 6899999873

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.06  E-value=1.4e-05  Score=73.87  Aligned_cols=81  Identities=19%  Similarity=0.345  Sum_probs=65.9

Q ss_pred             CCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005           25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (432)
Q Consensus        25 ~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~  104 (432)
                      ....+..+..|.|++++|+.+.|+.|+.||+|.+||...+.                             +.+....   
T Consensus       252 svtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~-----------------------------t~~~ka~---  299 (545)
T PF11768_consen  252 SVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV-----------------------------TLLAKAE---  299 (545)
T ss_pred             EEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe-----------------------------eeeeeec---
Confidence            44556778899999999999999999999999999987653                             2222222   


Q ss_pred             cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc
Q 014005          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK  148 (432)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~  148 (432)
                               -..+.++|  +|+|..+++|+..|.+.+||+.-..
T Consensus       300 ---------~~P~~iaW--Hp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  300 ---------FIPTLIAW--HPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ---------ccceEEEE--cCCCcEEEEEcCCceEEEEEeecCc
Confidence                     45678999  8999999999999999999987544

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=0.0001  Score=65.62  Aligned_cols=213  Identities=10%  Similarity=-0.017  Sum_probs=130.0

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      +.|+.+.-   ...+++++++.||+++.|.-..-. .+.+..+..|.           +.+..++.+.++....+... +
T Consensus        10 d~i~hv~~---tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL-----------~~I~sl~~S~dg~L~~Sv~d-~   74 (558)
T KOG0882|consen   10 DVITHVFP---TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHL-----------GVILSLAVSYDGWLFRSVED-P   74 (558)
T ss_pred             ceeeeEee---ehhheEEeeecchhhhhcCCCCccceeehhhhHHHH-----------HHHHhhhccccceeEeeccC-c
Confidence            56666554   456799999999999999865422 22332233333           66777777777776666432 3


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC--CEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      |..++++|+.+.-....++.  ....+.+. ...++..  ..++++  +++.+.++|-.........+      ..-|.+
T Consensus        75 Dhs~KvfDvEn~DminmiKL--~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f------kklH~s  145 (558)
T KOG0882|consen   75 DHSVKVFDVENFDMINMIKL--VDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF------KKLHFS  145 (558)
T ss_pred             ccceeEEEeeccchhhhccc--ccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee------cccccC
Confidence            78899999874311112221  11222222 2222321  134444  79999999988333222222      267889


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccc-cccccccceeecc-cccccCCccceeeeecceeEEEEcCCCCEEEE-e
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLS-R  345 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~  345 (432)
                      +|..+.++|-+ ..+++....|.|.-|.... -+.... ...+.- |...   .-.+........++.|+|+|..+++ +
T Consensus       146 PV~~i~y~qa~-Ds~vSiD~~gmVEyWs~e~~~qfPr~-~l~~~~K~eTd---Ly~f~K~Kt~pts~Efsp~g~qistl~  220 (558)
T KOG0882|consen  146 PVKKIRYNQAG-DSAVSIDISGMVEYWSAEGPFQFPRT-NLNFELKHETD---LYGFPKAKTEPTSFEFSPDGAQISTLN  220 (558)
T ss_pred             ceEEEEeeccc-cceeeccccceeEeecCCCcccCccc-cccccccccch---hhcccccccCccceEEccccCcccccC
Confidence            99999999998 8888888999999999772 111000 000000 0000   0011223567889999999999998 5


Q ss_pred             eCCeEEEEec
Q 014005          346 DYMNLKVFRY  355 (432)
Q Consensus       346 ~~~~i~iwd~  355 (432)
                      .|..|++++.
T Consensus       221 ~DrkVR~F~~  230 (558)
T KOG0882|consen  221 PDRKVRGFVF  230 (558)
T ss_pred             cccEEEEEEe
Confidence            6699999998

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.95  E-value=0.0011  Score=62.08  Aligned_cols=100  Identities=16%  Similarity=0.234  Sum_probs=57.6

Q ss_pred             eeEEEeCCCCCEEEEE-cCCeEEEE-eCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005          221 INSISNNSDCETFVSA-DDLRINLW-NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  298 (432)
Q Consensus       221 i~~~~~~~~~~~l~~~-~d~~i~lw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~  298 (432)
                      -..++|.+.++ +|+- .+++|.++ +.+  ....+.+     ...   ..+..+-.   | .+|+..+.+ .|.+||..
T Consensus        71 g~~~vw~~~n~-yAv~~~~~~I~I~kn~~--~~~~k~i-----~~~---~~~~~If~---G-~LL~~~~~~-~i~~yDw~  134 (443)
T PF04053_consen   71 GLSFVWSSRNR-YAVLESSSTIKIYKNFK--NEVVKSI-----KLP---FSVEKIFG---G-NLLGVKSSD-FICFYDWE  134 (443)
T ss_dssp             -SEEEE-TSSE-EEEE-TTS-EEEEETTE--E-TT----------S---S-EEEEE----S-SSEEEEETT-EEEEE-TT
T ss_pred             eeEEEEecCcc-EEEEECCCeEEEEEcCc--cccceEE-----cCC---cccceEEc---C-cEEEEECCC-CEEEEEhh
Confidence            34678888554 6666 78889986 333  2221221     011   12333322   6 777777655 89999999


Q ss_pred             ccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       299 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                      +++.    ++.+..               .+|..+.|+++|.++|..++..+.|++.
T Consensus       135 ~~~~----i~~i~v---------------~~vk~V~Ws~~g~~val~t~~~i~il~~  172 (443)
T PF04053_consen  135 TGKL----IRRIDV---------------SAVKYVIWSDDGELVALVTKDSIYILKY  172 (443)
T ss_dssp             T--E----EEEESS----------------E-EEEEE-TTSSEEEEE-S-SEEEEEE
T ss_pred             Hcce----eeEEec---------------CCCcEEEEECCCCEEEEEeCCeEEEEEe
Confidence            9876    577765               3589999999999999987788888887

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=0.00033  Score=67.12  Aligned_cols=187  Identities=14%  Similarity=0.092  Sum_probs=121.4

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      ..++++++    .++.|+.|+.+|.|++.+..... .....+.              .      -...|.++++++.  |
T Consensus        40 D~is~~av----~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s--------------~------~~~~Gey~asCS~--D   92 (846)
T KOG2066|consen   40 DAISCCAV----HDKFFALGTHRGAVYLTTCQGNP-KTNFDHS--------------S------SILEGEYVASCSD--D   92 (846)
T ss_pred             hHHHHHHh----hcceeeeccccceEEEEecCCcc-ccccccc--------------c------cccCCceEEEecC--C
Confidence            56777777    36789999999999999976543 2211110              0      1567889999998  9


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-----CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-----CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      |.+.|..+.   +.+....+  .-..++.+++++|+     .+.+++| ..| +.++..+.-+....+      ......
T Consensus        93 Gkv~I~sl~---~~~~~~~~--df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v------~l~~~e  160 (846)
T KOG2066|consen   93 GKVVIGSLF---TDDEITQY--DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV------VLSEGE  160 (846)
T ss_pred             CcEEEeecc---CCccceeE--ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce------eeecCc
Confidence            999988877   33333332  23458999999998     5567777 666 888766533322221      125566


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~  347 (432)
                      ++|.++.|.  | +++|-++.+| |++||+.+++.    +..++- + ....+.     ......+.|.++.++++ |-.
T Consensus       161 G~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~~----l~~i~~-p-~~~~R~-----e~fpphl~W~~~~~LVI-GW~  224 (846)
T KOG2066|consen  161 GPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQR----LTNIPP-P-SQSVRP-----ELFPPHLHWQDEDRLVI-GWG  224 (846)
T ss_pred             cceEEEEec--C-cEEEEecCCC-cEEEeccccce----eeccCC-C-CCCCCc-----ccCCCceEecCCCeEEE-ecC
Confidence            889999997  5 7888888776 89999998765    233322 1 111110     22345688988776555 422


Q ss_pred             CeEEEEec
Q 014005          348 MNLKVFRY  355 (432)
Q Consensus       348 ~~i~iwd~  355 (432)
                      .+|+|..+
T Consensus       225 d~v~i~~I  232 (846)
T KOG2066|consen  225 DSVKICSI  232 (846)
T ss_pred             CeEEEEEE
Confidence            47777777

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.89  E-value=0.003  Score=58.05  Aligned_cols=259  Identities=12%  Similarity=0.133  Sum_probs=118.9

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ...+....|||+|+.+|... ++.|.+++..++...        .+...+..           ..+.|-.   |++..-+
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~--------~lT~dg~~-----------~i~nG~~---dwvyeEE   98 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET--------QLTTDGEP-----------GIYNGVP---DWVYEEE   98 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE--------ESES--TT-----------TEEESB-----HHHHHH
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE--------Eeccccce-----------eEEcCcc---ceecccc
Confidence            35688899999999999875 578999987665422        00000000           0011111   2221111


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeC-CCeEEEEEc---cCc-----ceeeeee-cCC--CCccc------------ccc--
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKV---RDQ-----KVKKIKE-MDH--FPFVS------------SEN--  165 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~---~~~-----~~~~~~~-~~~--~~~~~------------~~~--  165 (432)
                      +-+.-..+.|  +||+++|+.... +..|+.+.+   ...     +...+.- ..+  ++.+.            .+.  
T Consensus        99 v~~~~~~~~W--Spd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~  176 (353)
T PF00930_consen   99 VFDRRSAVWW--SPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPP  176 (353)
T ss_dssp             TSSSSBSEEE---TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---
T ss_pred             ccccccceEE--CCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeec
Confidence            1123456788  888888887743 333433332   111     1111100 000  00000            000  


Q ss_pred             --ccccccccccccCCCCCcceecceeec---cceEEEEeecccccceeeEEeecCCCCCe---eEEEeC-CCCCEEE-E
Q 014005          166 --TLLAEKNFMNEHNPPSFAHGYHLEWTE---NMATKIANVGNSVHARCQKVYPHAHDFNI---NSISNN-SDCETFV-S  235 (432)
Q Consensus       166 --~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~v~i~d~~~~~~~~~~~~~~~~~~~~i---~~~~~~-~~~~~l~-~  235 (432)
                        .......+..+.|.+++..++.....-   ...+.+.|...   +.+...........|   ....+. +++..++ .
T Consensus       177 ~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t---g~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~  253 (353)
T PF00930_consen  177 NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST---GETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWI  253 (353)
T ss_dssp             HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT---TTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEE
T ss_pred             cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC---CceeEEEEecCCcceeeecccccccCCCCEEEEE
Confidence              011234445566666666333332211   11445555543   222222212233333   245554 6655555 4


Q ss_pred             E-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE-EEEEcCCCCcEEEEEeCCC----eEEEEEcc-ccccccccce
Q 014005          236 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSSRG----FVRLVDMR-QSALCDHSAR  308 (432)
Q Consensus       236 ~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~~~~~dg----~i~iwd~~-~~~~~~~~~~  308 (432)
                      . .+|.-+|+-++..+...+.+       ....-.|+ -+.+++++..+.++|..++    .+..-++. .+.     .+
T Consensus       254 s~~~G~~hly~~~~~~~~~~~l-------T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-----~~  321 (353)
T PF00930_consen  254 SERDGYRHLYLYDLDGGKPRQL-------TSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-----PK  321 (353)
T ss_dssp             EETTSSEEEEEEETTSSEEEES-------S-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-----EE
T ss_pred             EEcCCCcEEEEEcccccceecc-------ccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-----eE
Confidence            4 77765555554334443333       33344464 4678888745556666533    45555555 333     35


Q ss_pred             eecccccccCCccceeeeecce-eEEEEcCCCCEEEE
Q 014005          309 ILRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLS  344 (432)
Q Consensus       309 ~~~~h~~~~~~~~~~~~~~~~v-~~~~~s~dg~~l~s  344 (432)
                      .+...              ... ..+.|||+|++++-
T Consensus       322 ~LT~~--------------~~~~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  322 CLTCE--------------DGDHYSASFSPDGKYYVD  344 (353)
T ss_dssp             ESSTT--------------SSTTEEEEE-TTSSEEEE
T ss_pred             eccCC--------------CCCceEEEECCCCCEEEE
Confidence            55542              233 58999999999875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.89  E-value=0.0054  Score=52.87  Aligned_cols=186  Identities=11%  Similarity=-0.004  Sum_probs=99.5

Q ss_pred             CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccc
Q 014005          126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV  205 (432)
Q Consensus       126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~  205 (432)
                      ++..+++++.++.+..||..+++..-......              .+.... ...+..++....  ++.+..+|..   
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~--------------~~~~~~-~~~~~~v~v~~~--~~~l~~~d~~---   94 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPG--------------PISGAP-VVDGGRVYVGTS--DGSLYALDAK---   94 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSS--------------CGGSGE-EEETTEEEEEET--TSEEEEEETT---
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccc--------------ccccee-eecccccccccc--eeeeEecccC---
Confidence            46678888899999999999988554433321              111111 122223333333  6688888877   


Q ss_pred             cceeeEEeecCC--C-CCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC---CcceEEEEEcCC
Q 014005          206 HARCQKVYPHAH--D-FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL---TEVITSAEFHPI  278 (432)
Q Consensus       206 ~~~~~~~~~~~~--~-~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~  278 (432)
                      +++.+.......  . ..........++..++.+ .++.+..+|.+ +++.+............+   ...+..-....+
T Consensus        95 tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (238)
T PF13360_consen   95 TGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPK-TGKLLWKYPVGEPRGSSPISSFSDINGSPVISD  173 (238)
T ss_dssp             TSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETT-TTEEEEEEESSTT-SS--EEEETTEEEEEECCT
T ss_pred             CcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecC-CCcEEEEeecCCCCCCcceeeecccccceEEEC
Confidence            555555521111  1 111122222236777777 79999999999 677665553311110110   011222223334


Q ss_pred             CCcEEEEEeCCCe-EEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005          279 YCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       279 ~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~  355 (432)
                      +  .+..++.++. +.+ |+.+++.    +  ++..             ...+... ...++..|+.++ ++.+..||+
T Consensus       174 ~--~v~~~~~~g~~~~~-d~~tg~~----~--w~~~-------------~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  174 G--RVYVSSGDGRVVAV-DLATGEK----L--WSKP-------------ISGIYSL-PSVDGGTLYVTSSDGRLYALDL  229 (238)
T ss_dssp             T--EEEEECCTSSEEEE-ETTTTEE----E--EEEC-------------SS-ECEC-EECCCTEEEEEETTTEEEEEET
T ss_pred             C--EEEEEcCCCeEEEE-ECCCCCE----E--EEec-------------CCCccCC-ceeeCCEEEEEeCCCEEEEEEC
Confidence            3  4555666665 555 9998874    1  2220             0122221 345666777654 599999998

...

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=0.0029  Score=61.37  Aligned_cols=196  Identities=11%  Similarity=0.102  Sum_probs=120.7

Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCC-CCCcceecceeecc--c-eEEEE
Q 014005          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP-PSFAHGYHLEWTEN--M-ATKIA  199 (432)
Q Consensus       124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~--~-~v~i~  199 (432)
                      ++.+..++.|+.+|.|.+.+-.-   +....++..+           ..+...-+. .+..++++.+....  - .+++|
T Consensus        32 ~s~~~~vvigt~~G~V~~Ln~s~---~~~~~fqa~~-----------~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw   97 (933)
T KOG2114|consen   32 SSSTGSVVIGTADGRVVILNSSF---QLIRGFQAYE-----------QSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIW   97 (933)
T ss_pred             cCCCceEEEeeccccEEEecccc---eeeehheecc-----------hhhhhHhhcccCceEEEEEeecCCCCceEEEEe
Confidence            67888999999999988876432   2223333333           232233333 33345555444221  1 69999


Q ss_pred             eecccc---cceee---EEee---cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC-ceeeEeecCCCCcCCCCc
Q 014005          200 NVGNSV---HARCQ---KVYP---HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       200 d~~~~~---~~~~~---~~~~---~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~  268 (432)
                      +++...   ...|.   +.++   .....++.+++++.+-..+|+| .||.|.++.-+... +..+.-     -...-..
T Consensus        98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~-----~~~~~~~  172 (933)
T KOG2114|consen   98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD-----YSHRGKE  172 (933)
T ss_pred             cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee-----eeccCCC
Confidence            987531   13455   3331   1235678899999999999999 99999988543111 111110     1134457


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCC
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM  348 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~  348 (432)
                      +|+.+.+..++...+.++. ...|.+|.+.... +.  .+.+..|             ..++.+.+|++....++++...
T Consensus       173 pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~-p~--~~~ld~~-------------G~~lnCss~~~~t~qfIca~~e  235 (933)
T KOG2114|consen  173 PITGLALRSDGKSVLFVAT-TEQVMLYSLSGRT-PS--LKVLDNN-------------GISLNCSSFSDGTYQFICAGSE  235 (933)
T ss_pred             CceeeEEecCCceeEEEEe-cceeEEEEecCCC-cc--eeeeccC-------------CccceeeecCCCCccEEEecCc
Confidence            8999999988833233333 4579999988433 21  3445554             6788888888765546666558


Q ss_pred             eEEEEec
Q 014005          349 NLKVFRY  355 (432)
Q Consensus       349 ~i~iwd~  355 (432)
                      .+.+||.
T Consensus       236 ~l~fY~s  242 (933)
T KOG2114|consen  236 FLYFYDS  242 (933)
T ss_pred             eEEEEcC
Confidence            9999999

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.85  E-value=0.00036  Score=67.76  Aligned_cols=152  Identities=11%  Similarity=0.078  Sum_probs=101.6

Q ss_pred             ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec--
Q 014005          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE--  192 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--  192 (432)
                      .|.-|+.    +++.+++|...|+|.+-|..+-+  .+..+..|.           +.+  .+|+-.++.+++++.+.  
T Consensus       179 ~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~--~iht~~aHs-----------~si--SDfDv~GNlLitCG~S~R~  239 (1118)
T KOG1275|consen  179 GVTIMRY----NNRNLFCGDTRGTVFLRDPNSFE--TIHTFDAHS-----------GSI--SDFDVQGNLLITCGYSMRR  239 (1118)
T ss_pred             ceEEEEe----cCcEEEeecccceEEeecCCcCc--eeeeeeccc-----------cce--eeeeccCCeEEEeeccccc
Confidence            3555554    67899999999999999998766  333444444           444  34556677777776532  


Q ss_pred             -----cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEe---CCCCCceeeEeecCCCC
Q 014005          193 -----NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWN---LEISDQCFNIVDMKPSN  262 (432)
Q Consensus       193 -----~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd---~~~~~~~~~~~~~~~~~  262 (432)
                           |..|++||++....-.++...     ....-+.|.|. ...+++. ..|...+-|   +.........+      
T Consensus       240 ~~l~~D~FvkVYDLRmmral~PI~~~-----~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v------  308 (1118)
T KOG1275|consen  240 YNLAMDPFVKVYDLRMMRALSPIQFP-----YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV------  308 (1118)
T ss_pred             ccccccchhhhhhhhhhhccCCcccc-----cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEE------
Confidence                 678999999965444444332     12244667775 3345555 889988888   33221122222      


Q ss_pred             cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  298 (432)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~  298 (432)
                       ....+.+..+++++++ +.+|.|..+|.|.+|.-+
T Consensus       309 -~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  309 -NPNGSGISAFDISSNG-DALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             -ccCCCcceeEEecCCC-ceEEEecccCcEeeecCC
Confidence             3445569999999999 999999999999999833

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.84  E-value=0.0013  Score=61.23  Aligned_cols=185  Identities=13%  Similarity=0.077  Sum_probs=110.5

Q ss_pred             cceeEEEEEEcCCCCEEEEE---eCC-CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          114 EKINRVRWCAAPNGSMFILS---TND-KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~---~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                      ..+..-+|  +++++.++..   ... ..+.++++.+++...+....              +.-...+|+|+++.++-..
T Consensus       193 ~~~~~p~w--s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~--------------g~~~~P~fspDG~~l~f~~  256 (425)
T COG0823         193 SLILTPAW--SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN--------------GNNGAPAFSPDGSKLAFSS  256 (425)
T ss_pred             cceecccc--CcCCCceEEEEEecCCCceEEEEeccCCccceeeccC--------------CccCCccCCCCCCEEEEEE
Confidence            45566778  7788776554   223 46999999988866665544              3445678999998887765


Q ss_pred             eec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          190 WTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       190 ~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      ... .-.+.+.|+...   . ...+ ....+.-..-.|+|+|+.++..  ..|.-.+|-++..+.....+       ...
T Consensus       257 ~rdg~~~iy~~dl~~~---~-~~~L-t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri-------T~~  324 (425)
T COG0823         257 SRDGSPDIYLMDLDGK---N-LPRL-TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL-------TFS  324 (425)
T ss_pred             CCCCCccEEEEcCCCC---c-ceec-ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe-------ecc
Confidence            432 225666666632   2 2223 2223333366799999999866  55654444443223332322       122


Q ss_pred             CcceEEEEEcCCCCcEEEEEeC-CCe--EEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005          267 TEVITSAEFHPIYCNLLAYSSS-RGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  343 (432)
                      ...-..-.|+||| .+++..+. +|.  |.+.|+.++..    .+.+..              ........|.++|+.+.
T Consensus       325 ~~~~~~p~~SpdG-~~i~~~~~~~g~~~i~~~~~~~~~~----~~~lt~--------------~~~~e~ps~~~ng~~i~  385 (425)
T COG0823         325 GGGNSNPVWSPDG-DKIVFESSSGGQWDIDKNDLASGGK----IRILTS--------------TYLNESPSWAPNGRMIM  385 (425)
T ss_pred             CCCCcCccCCCCC-CEEEEEeccCCceeeEEeccCCCCc----EEEccc--------------cccCCCCCcCCCCceEE
Confidence            2222277899999 66665553 454  66666665552    345544              34455678888888877


Q ss_pred             Ee
Q 014005          344 SR  345 (432)
Q Consensus       344 s~  345 (432)
                      ..
T Consensus       386 ~~  387 (425)
T COG0823         386 FS  387 (425)
T ss_pred             Ee
Confidence            63

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.81  E-value=1.3e-05  Score=74.33  Aligned_cols=208  Identities=11%  Similarity=0.111  Sum_probs=125.4

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC-Ccceeccee--
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS-FAHGYHLEW--  190 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~--  190 (432)
                      ..+.|+++.-..+...++.|..+|.|.+-.++...-........+           ....++++|++- ...++.|..  
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~-----------ar~Ct~lAwneLDtn~LAagldkh  125 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGY-----------ARPCTSLAWNELDTNHLAAGLDKH  125 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccc-----------cccccccccccccHHHHHhhhhhh
Confidence            456666663233445688889999999988765432111111122           256778888775 445555532  


Q ss_pred             eccceEEEEeecccccceeeE--EeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          191 TENMATKIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      -.+..+.|||+....+ .+..  .|..+.....++++|..+.+.+.+| ....+.++|++.......         .-.+
T Consensus       126 rnds~~~Iwdi~s~lt-vPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~---------svnT  195 (783)
T KOG1008|consen  126 RNDSSLKIWDINSLLT-VPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS---------SVNT  195 (783)
T ss_pred             cccCCccceecccccC-CCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh---------hhhh
Confidence            1266899999985422 1211  1212244566789999889999999 888999999993322222         1223


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEE-ccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC-EEEE-
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVD-MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLS-  344 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~s-  344 (432)
                      ..+..+..+|-..+++++.. ||.|.+|| .+.-+.   ++..+.. ...+.        ...+..++|.|... .+++ 
T Consensus       196 k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnien---pl~~i~~-~~N~~--------~~~l~~~aycPtrtglla~l  262 (783)
T KOG1008|consen  196 KYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIEN---PLQIILR-NENKK--------PKQLFALAYCPTRTGLLAVL  262 (783)
T ss_pred             hhcccceecCCCCCceeccc-cCceeeccchhhhcc---HHHHHhh-CCCCc--------ccceeeEEeccCCcchhhhh
Confidence            34667788884437777555 99999999 443221   1232222 11111        13588999999643 3333 


Q ss_pred             eeC-CeEEEEec
Q 014005          345 RDY-MNLKVFRY  355 (432)
Q Consensus       345 ~~~-~~i~iwd~  355 (432)
                      ..+ ++|+++|+
T Consensus       263 ~RdS~tIrlydi  274 (783)
T KOG1008|consen  263 SRDSITIRLYDI  274 (783)
T ss_pred             ccCcceEEEecc
Confidence            444 99999999

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.78  E-value=0.007  Score=52.18  Aligned_cols=188  Identities=16%  Similarity=0.067  Sum_probs=104.0

Q ss_pred             CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEE
Q 014005           43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC  122 (432)
Q Consensus        43 ~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~  122 (432)
                      ++.++++++.++.+..||..+++..                           ..+....             .+....  
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~---------------------------W~~~~~~-------------~~~~~~--   72 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVL---------------------------WRFDLPG-------------PISGAP--   72 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEE---------------------------EEEECSS-------------CGGSGE--
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEE---------------------------EEeeccc-------------ccccee--
Confidence            4666777788999999999888643                           2232211             111111  


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEccCcceeee-eecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEee
Q 014005          123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANV  201 (432)
Q Consensus       123 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~  201 (432)
                       ..++..++.++.++.+..+|..+++.... .......          ............+..++.+..  ++.+..+|+
T Consensus        73 -~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~--~g~l~~~d~  139 (238)
T PF13360_consen   73 -VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP----------AGVRSSSSPAVDGDRLYVGTS--SGKLVALDP  139 (238)
T ss_dssp             -EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT----------CSTB--SEEEEETTEEEEEET--CSEEEEEET
T ss_pred             -eecccccccccceeeeEecccCCcceeeeeccccccc----------cccccccCceEecCEEEEEec--cCcEEEEec
Confidence             12355677777888999999998885443 1211111          000111112222455555554  788889998


Q ss_pred             cccccceeeEEeecCCCCC----------eeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          202 GNSVHARCQKVYPHAHDFN----------INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                      +   +++.+..+. .....          +..-....++ .+..+ .++.+..+|+. +++.+...       .  ...+
T Consensus       140 ~---tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~-tg~~~w~~-------~--~~~~  204 (238)
T PF13360_consen  140 K---TGKLLWKYP-VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLA-TGEKLWSK-------P--ISGI  204 (238)
T ss_dssp             T---TTEEEEEEE-SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETT-TTEEEEEE-------C--SS-E
T ss_pred             C---CCcEEEEee-cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECC-CCCEEEEe-------c--CCCc
Confidence            8   667666652 22211          1222233345 44444 66654444998 55433221       1  1112


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      ... ..+++ ..|+.++.++.+..||+++|+.
T Consensus       205 ~~~-~~~~~-~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  205 YSL-PSVDG-GTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             CEC-EECCC-TEEEEEETTTEEEEEETTTTEE
T ss_pred             cCC-ceeeC-CEEEEEeCCCEEEEEECCCCCE
Confidence            221 34555 6777777999999999999875

...

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.76  E-value=0.0044  Score=59.26  Aligned_cols=113  Identities=9%  Similarity=0.033  Sum_probs=70.8

Q ss_pred             CCCCcceecceeeccceEEEEeeccc--ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceee
Q 014005          179 PPSFAHGYHLEWTENMATKIANVGNS--VHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN  254 (432)
Q Consensus       179 ~~~~~~~~~~~~~~~~~v~i~d~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~  254 (432)
                      .+++++...    .++.|.+.|....  .....+..+  .-......+.++|||++++++  .+.++.+.|++.....+.
T Consensus       285 vkdGK~~~V----~gn~V~VID~~t~~~~~~~v~~yI--PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~  358 (635)
T PRK02888        285 VKAGKFKTI----GGSKVPVVDGRKAANAGSALTRYV--PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD  358 (635)
T ss_pred             hhCCCEEEE----CCCEEEEEECCccccCCcceEEEE--ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence            345554443    2567889888730  002333333  344577889999999998876  699999999984332110


Q ss_pred             EeecCCCC----cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005          255 IVDMKPSN----MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (432)
Q Consensus       255 ~~~~~~~~----~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~  299 (432)
                      - .+++..    -..-.......+|+++| +...+--.|..|..||+.+
T Consensus       359 ~-~~~~~~~vvaevevGlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        359 G-KIKPRDAVVAEPELGLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             c-cCCccceEEEeeccCCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence            0 000000    00112234567899998 8888888999999999886

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.67  E-value=0.0019  Score=63.96  Aligned_cols=137  Identities=15%  Similarity=0.131  Sum_probs=91.8

Q ss_pred             cceEEEEeecccccceeeEEeecCCC-CCeeEEEeCC-----CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHD-FNINSISNNS-----DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~-----~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      ...+.-.|++   .++.+..+ ..+. ..|..++-..     +......| +++.+..||.|..+..+..-  .... -.
T Consensus       503 ~~~ly~mDLe---~GKVV~eW-~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~--~~k~-Y~  575 (794)
T PF08553_consen  503 PNKLYKMDLE---RGKVVEEW-KVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS--QSKQ-YS  575 (794)
T ss_pred             CCceEEEecC---CCcEEEEe-ecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec--cccc-cc
Confidence            4567777777   78888888 3443 3355554321     13345667 99999999999655322110  0001 12


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                      .....+|++-+.+|  +||+|+.+|.||+|| +.|+..   ...+.+             ...+|.++..+.||+||++-
T Consensus       576 ~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd-~~g~~A---KT~lp~-------------lG~pI~~iDvt~DGkwilaT  636 (794)
T PF08553_consen  576 SKNNFSCFATTEDG--YIAVGSNKGDIRLYD-RLGKRA---KTALPG-------------LGDPIIGIDVTADGKWILAT  636 (794)
T ss_pred             cCCCceEEEecCCc--eEEEEeCCCcEEeec-ccchhh---hhcCCC-------------CCCCeeEEEecCCCcEEEEe
Confidence            34457888888887  789999999999999 444432   222322             35799999999999999876


Q ss_pred             eCCeEEEEec
Q 014005          346 DYMNLKVFRY  355 (432)
Q Consensus       346 ~~~~i~iwd~  355 (432)
                      .+..+.+++.
T Consensus       637 c~tyLlLi~t  646 (794)
T PF08553_consen  637 CKTYLLLIDT  646 (794)
T ss_pred             ecceEEEEEE
Confidence            6678888887

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.59  E-value=0.067  Score=50.14  Aligned_cols=37  Identities=19%  Similarity=0.131  Sum_probs=28.3

Q ss_pred             cceeEEEEcCCCCEEEEeeC-CeEEEEec---CcceeEeec
Q 014005          328 ASISDIKFANDGQHLLSRDY-MNLKVFRY---EPVMTLSFC  364 (432)
Q Consensus       328 ~~v~~~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~  364 (432)
                      +++..++.||+|++||.-.+ |.+.+.+.   +.+..+...
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~  257 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD  257 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence            68999999999999998655 89888877   444444443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.57  E-value=0.00066  Score=64.19  Aligned_cols=120  Identities=11%  Similarity=0.145  Sum_probs=87.1

Q ss_pred             CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 014005          217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (432)
Q Consensus       217 ~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iw  295 (432)
                      +...+.--+++..+++++.| +-|.+++|+.. .+.....      +..+..+.+.....|++. .++|.|+..|.|.++
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~-~~~~~~~------~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~  103 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRH-TGEMRKL------KNEGATGITCVRSVSSVE-YLVAAGTASGRVSVF  103 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecC-chhhhcc------cccCccceEEEEEecchh-HhhhhhcCCceEEee
Confidence            44455556677889999999 99999999988 4433221      123445567778889988 999999999999999


Q ss_pred             EccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       296 d~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      -+..+..... ...-..|   .       .|...|++++|++|++.+.+|++ |+|..-.+
T Consensus       104 ql~~~~p~~~-~~~t~~d---~-------~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L  153 (726)
T KOG3621|consen  104 QLNKELPRDL-DYVTPCD---K-------SHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL  153 (726)
T ss_pred             hhhccCCCcc-eeecccc---c-------cCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence            9887443211 1111111   0       13689999999999999999988 99988877

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.00033  Score=61.71  Aligned_cols=82  Identities=17%  Similarity=0.109  Sum_probs=65.8

Q ss_pred             eEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe
Q 014005          210 QKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  287 (432)
Q Consensus       210 ~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  287 (432)
                      ...+ ..+...|..++|+|..+ .+..+ -+..|++.|++ +......+       ..+ ..+++++|+-+..+++.+|.
T Consensus       186 sq~l-p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle-t~~~vssy-------~a~-~~~wSC~wDlde~h~IYaGl  255 (463)
T KOG1645|consen  186 SQIL-PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE-TSCVVSSY-------IAY-NQIWSCCWDLDERHVIYAGL  255 (463)
T ss_pred             hhcc-cccchhhhhhccCccccceeeeeccCceEEEEecc-cceeeehe-------ecc-CCceeeeeccCCcceeEEec
Confidence            3444 67888999999999887 45566 89999999999 55555544       444 77999999998877888888


Q ss_pred             CCCeEEEEEccccc
Q 014005          288 SRGFVRLVDMRQSA  301 (432)
Q Consensus       288 ~dg~i~iwd~~~~~  301 (432)
                      .+|.|.+||+|..+
T Consensus       256 ~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  256 QNGMVLVYDMRQPE  269 (463)
T ss_pred             cCceEEEEEccCCC
Confidence            99999999999644

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.49  E-value=0.032  Score=52.43  Aligned_cols=216  Identities=12%  Similarity=0.146  Sum_probs=106.2

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      ....++++|+|++++.+ .||.-.|+......                           ...     .            
T Consensus        34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r---------------------------~k~-----~------------   68 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWR---------------------------NKA-----F------------   68 (443)
T ss_dssp             --SEEEE-TTSSEEEEE-ETTEEEEEETTTTE---------------------------EEE-----E------------
T ss_pred             CCeeEEECCCCCEEEEE-cCCEEEEEEccCCc---------------------------ccc-----c------------
Confidence            46789999999998884 56788888732211                           001     1            


Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcce-eeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      +.-....|  .+.+ .+|+-...++|.++.--.... +.+ ...              ..+..+..   |..+...+   
T Consensus        69 G~g~~~vw--~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i-~~~--------------~~~~~If~---G~LL~~~~---  124 (443)
T PF04053_consen   69 GSGLSFVW--SSRN-RYAVLESSSTIKIYKNFKNEVVKSI-KLP--------------FSVEKIFG---GNLLGVKS---  124 (443)
T ss_dssp             EE-SEEEE---TSS-EEEEE-TTS-EEEEETTEE-TT------S--------------S-EEEEE----SSSEEEEE---
T ss_pred             CceeEEEE--ecCc-cEEEEECCCeEEEEEcCccccceEE-cCC--------------cccceEEc---CcEEEEEC---
Confidence            44456788  5644 577777788899974322221 111 111              01111111   44444433   


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCC--------C--ceeeEeecCCCC
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEIS--------D--QCFNIVDMKPSN  262 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~--------~--~~~~~~~~~~~~  262 (432)
                      ++.+.+||..   +++.++.+ .  -..|..+.|++++.+++...+..+.+++.+..        +  ..+..+      
T Consensus       125 ~~~i~~yDw~---~~~~i~~i-~--v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~------  192 (443)
T PF04053_consen  125 SDFICFYDWE---TGKLIRRI-D--VSAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELI------  192 (443)
T ss_dssp             TTEEEEE-TT---T--EEEEE-S--S-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEE------
T ss_pred             CCCEEEEEhh---HcceeeEE-e--cCCCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEE------
Confidence            5579999999   77788876 2  22488999999999999886778888887621        0  023322      


Q ss_pred             cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (432)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  342 (432)
                       ......|.+.+|.-+   .|+..+.. .++-  +..|..     .++..             ...++.=+...+....+
T Consensus       193 -~E~~~~IkSg~W~~d---~fiYtT~~-~lkY--l~~Ge~-----~~i~~-------------ld~~~yllgy~~~~~~l  247 (443)
T PF04053_consen  193 -HEISERIKSGCWVED---CFIYTTSN-HLKY--LVNGET-----GIIAH-------------LDKPLYLLGYLPKENRL  247 (443)
T ss_dssp             -EEE-S--SEEEEETT---EEEEE-TT-EEEE--EETTEE-----EEEEE--------------SS--EEEEEETTTTEE
T ss_pred             -EEecceeEEEEEEcC---EEEEEcCC-eEEE--EEcCCc-----ceEEE-------------cCCceEEEEEEccCCEE
Confidence             222456778888744   45545444 5655  444432     22221             02345556666654455


Q ss_pred             EEeeC-CeEEEEec
Q 014005          343 LSRDY-MNLKVFRY  355 (432)
Q Consensus       343 ~s~~~-~~i~iwd~  355 (432)
                      ...+. +.+..+.+
T Consensus       248 y~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  248 YLIDRDGNVISYEL  261 (443)
T ss_dssp             EEE-TT--EEEEE-
T ss_pred             EEEECCCCEEEEEE
Confidence            55433 66666666

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.48  E-value=0.077  Score=49.70  Aligned_cols=60  Identities=10%  Similarity=-0.041  Sum_probs=37.6

Q ss_pred             CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       230 ~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      +..+..+ .++.+..+|.. +++.+...+     ..    ....+..  .+ ..++.++.+|.+..+|..+|+.
T Consensus       256 ~~~vy~~~~~g~l~ald~~-tG~~~W~~~-----~~----~~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~~  316 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLR-SGQIVWKRE-----YG----SVNDFAV--DG-GRIYLVDQNDRVYALDTRGGVE  316 (394)
T ss_pred             CCEEEEEEcCCeEEEEECC-CCCEEEeec-----CC----CccCcEE--EC-CEEEEEcCCCeEEEEECCCCcE
Confidence            3345555 88999999998 555443221     01    1111222  34 5677788899999999998875

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=0.00077  Score=62.98  Aligned_cols=75  Identities=23%  Similarity=0.218  Sum_probs=62.5

Q ss_pred             CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE-EEEEcCCCCcEEEEEeCCCeEEEE
Q 014005          218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLV  295 (432)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~~~~~dg~i~iw  295 (432)
                      ...+.-+.|+|.-..+|.+ .+|.+.+..++  -+.+.++       .-+...++ +++|.||| ++||.|-.||+|++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwti-------p~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~   89 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTI-------PIPGENVTASLCWRPDG-KLLAVGFKDGTIRLH   89 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec--cceeEec-------cCCCCccceeeeecCCC-CEEEEEecCCeEEEE
Confidence            3467789999999999999 99999998887  4555554       44555555 99999999 999999999999999


Q ss_pred             Ecccccc
Q 014005          296 DMRQSAL  302 (432)
Q Consensus       296 d~~~~~~  302 (432)
                      |..++..
T Consensus        90 Dve~~~~   96 (665)
T KOG4640|consen   90 DVEKGGR   96 (665)
T ss_pred             EccCCCc
Confidence            9998875

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.45  E-value=0.015  Score=53.66  Aligned_cols=131  Identities=13%  Similarity=0.129  Sum_probs=89.1

Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-------EEEEE-cCCeEEEEeCCCCCc-eeeEeecCCCCcC
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-------TFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMD  264 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~-~d~~i~lwd~~~~~~-~~~~~~~~~~~~~  264 (432)
                      ..++-.|++   .++.+..+ .-+.. |+-+.+.|+..       .-+.| +|..|.-||.+..+. .+...       +
T Consensus       356 ~~l~klDIE---~GKIVeEW-k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~-------q  423 (644)
T KOG2395|consen  356 DKLYKLDIE---RGKIVEEW-KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV-------Q  423 (644)
T ss_pred             Ccceeeecc---cceeeeEe-eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee-------e
Confidence            455556666   77777777 33443 77788888654       23457 899999999995554 22221       2


Q ss_pred             CC----CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005          265 DL----TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (432)
Q Consensus       265 ~~----~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~  340 (432)
                      +|    .....|.+-..+|  ++++|+.+|.|++||- .+...   ...+.+             ...+|..+..+.||+
T Consensus       424 ~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~A---KTAlPg-------------LG~~I~hVdvtadGK  484 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRA---KTALPG-------------LGDAIKHVDVTADGK  484 (644)
T ss_pred             ccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhh---hhcccc-------------cCCceeeEEeeccCc
Confidence            22    2235566666665  7899999999999995 55542   233333             367999999999999


Q ss_pred             EEEEeeCCeEEEEec
Q 014005          341 HLLSRDYMNLKVFRY  355 (432)
Q Consensus       341 ~l~s~~~~~i~iwd~  355 (432)
                      +|++-.+..+.+-++
T Consensus       485 wil~Tc~tyLlLi~t  499 (644)
T KOG2395|consen  485 WILATCKTYLLLIDT  499 (644)
T ss_pred             EEEEecccEEEEEEE
Confidence            988766677777777

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.38  E-value=0.0035  Score=58.48  Aligned_cols=144  Identities=13%  Similarity=0.085  Sum_probs=85.3

Q ss_pred             cccccccCCCCCcceecceeeccc--eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeE--EEE
Q 014005          171 KNFMNEHNPPSFAHGYHLEWTENM--ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRI--NLW  244 (432)
Q Consensus       171 ~~i~~~~~~~~~~~~~~~~~~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i--~lw  244 (432)
                      ..+....|++++..+........+  .+.+++++..   +..+..  .-.+.-..-+|+|||+.++..  .||..  ++.
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g---~~~~i~--~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~  267 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG---KRPVIL--NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM  267 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCC---ccceee--ccCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence            456677888988887766654433  5888888843   333332  122334457899999998865  67765  455


Q ss_pred             eCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC--eEEEEEccccccccccceeecccccccCCccc
Q 014005          245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSF  322 (432)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~  322 (432)
                      |+.  +.....+       ....+.-+.-.|+|||..++++.+..|  .|.++|+..+..     ..+..+         
T Consensus       268 dl~--~~~~~~L-------t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-----~riT~~---------  324 (425)
T COG0823         268 DLD--GKNLPRL-------TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-----TRLTFS---------  324 (425)
T ss_pred             cCC--CCcceec-------ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-----eEeecc---------
Confidence            555  3322222       222233346789999944444444555  466666665443     222221         


Q ss_pred             eeeeecceeEEEEcCCCCEEEEee
Q 014005          323 FTEIIASISDIKFANDGQHLLSRD  346 (432)
Q Consensus       323 ~~~~~~~v~~~~~s~dg~~l~s~~  346 (432)
                          ...-....|||||++|+..+
T Consensus       325 ----~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         325 ----GGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             ----CCCCcCccCCCCCCEEEEEe
Confidence                12222778999999998753

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.36  E-value=0.025  Score=41.12  Aligned_cols=65  Identities=18%  Similarity=0.260  Sum_probs=45.5

Q ss_pred             EEEEEEc---CCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           35 VSAIEFD---KTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        35 V~~~~fs---p~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      |+++++.   .+| +.|++|+.|..||+|+-+.                             .+.++.-.          
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----------------------------~~~Ei~e~----------   42 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----------------------------IVAEITET----------   42 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----------------------------EEEEEecc----------
Confidence            4555544   444 4799999999999998543                             22333322          


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV  144 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~  144 (432)
                         +.|.++.-  .. +..|+.+..+|+|-+|+-
T Consensus        43 ---~~v~~L~~--~~-~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen   43 ---DKVTSLCS--LG-GGRFAYALANGTVGVYDR   70 (111)
T ss_pred             ---cceEEEEE--cC-CCEEEEEecCCEEEEEeC
Confidence               56777777  33 368999999999999974

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.36  E-value=0.01  Score=50.35  Aligned_cols=85  Identities=13%  Similarity=0.075  Sum_probs=50.5

Q ss_pred             CCCCeeEEEeCCCCCEEEEE-cCC----eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEE-EEeCCC
Q 014005          217 HDFNINSISNNSDCETFVSA-DDL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRG  290 (432)
Q Consensus       217 ~~~~i~~~~~~~~~~~l~~~-~d~----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg  290 (432)
                      +.-.|..++..+||...+.. ..|    .--+--....++.++.+++.+.......+.|-+++.+.+. .+++ ++-..+
T Consensus       224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~-glV~lTSP~GN  302 (366)
T COG3490         224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRD-GLVALTSPRGN  302 (366)
T ss_pred             hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccC-CeEEEecCCCC
Confidence            34467778888888766544 222    1111111224455555544444434455678889998766 4444 444566


Q ss_pred             eEEEEEcccccc
Q 014005          291 FVRLVDMRQSAL  302 (432)
Q Consensus       291 ~i~iwd~~~~~~  302 (432)
                      ...+||..+|..
T Consensus       303 ~~vi~da~tG~v  314 (366)
T COG3490         303 RAVIWDAATGAV  314 (366)
T ss_pred             eEEEEEcCCCcE
Confidence            788999999985

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.34  E-value=0.00049  Score=66.38  Aligned_cols=110  Identities=10%  Similarity=-0.003  Sum_probs=84.2

Q ss_pred             ccccCCCCCcceecceeec--cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC
Q 014005          174 MNEHNPPSFAHGYHLEWTE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD  250 (432)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~  250 (432)
                      .-..|+|...+++..++++  .|.|.||--..    .+.+-.  ..+-.+.+++|+|..-.|+.| .-|.+.+|... ..
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtG----EPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~-~~   91 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFADTG----EPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN-TT   91 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEecCC----CCCccc--ccceehhhhccChHHHHHhhccccceeEEEecC-Cc
Confidence            3467899999998888766  77888885432    222211  122356789999999889999 89999999988 33


Q ss_pred             ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  298 (432)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~  298 (432)
                      +.....       ..|..+|..+.|||+| ..|+++..-|.+.+|...
T Consensus        92 e~htv~-------~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   92 ETHTVV-------ETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeeec-------cCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence            332222       6899999999999999 999999999999999765

>smart00320 WD40 WD40 repeats

Probab=97.31  E-value=0.0008  Score=38.39  Aligned_cols=37  Identities=27%  Similarity=0.626  Sum_probs=31.6

Q ss_pred             eeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 014005           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK  143 (432)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd  143 (432)
                      +...+..|.            ..|.++.|  .+++.++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~------------~~i~~~~~--~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHT------------GPVTSVAF--SPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecC------------CceeEEEE--CCCCCEEEEecCCCeEEEcC
Confidence            345666777            89999999  78889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.30  E-value=0.093  Score=45.08  Aligned_cols=208  Identities=11%  Similarity=0.133  Sum_probs=106.1

Q ss_pred             CcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeee--eecCCccccccch
Q 014005           33 DIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEPEFDYLKS  109 (432)
Q Consensus        33 ~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~h~~~~~~~~~  109 (432)
                      +.++.+.|+|+.+ ++++....+.|...+.+ ++.+                           +.  +.+.         
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vl---------------------------r~i~l~g~---------   64 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVL---------------------------RRIPLDGF---------   64 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EE---------------------------EEEE-SS----------
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEE---------------------------EEEeCCCC---------
Confidence            4699999999755 56667777787766754 3322                           22  2221         


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc----eeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK----VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (432)
                          +..-.|++  ..++.++++.-.++.+.++++....    ......+....      ....+..+..++|++....+
T Consensus        65 ----~D~EgI~y--~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~------~~~~N~G~EGla~D~~~~~L  132 (248)
T PF06977_consen   65 ----GDYEGITY--LGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGF------PNKGNKGFEGLAYDPKTNRL  132 (248)
T ss_dssp             ----SSEEEEEE---STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---------S---SS--EEEEEETTTTEE
T ss_pred             ----CCceeEEE--ECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEeccc------ccCCCcceEEEEEcCCCCEE
Confidence                45678888  5677666666678999999984321    11111111000      01134678999999987777


Q ss_pred             ecceeeccceEEEEeecccccceeeEEe-------ecCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCCCCCceeeEe
Q 014005          186 YHLEWTENMATKIANVGNSVHARCQKVY-------PHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIV  256 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~  256 (432)
                      ..+..  ..-..++.+............       .......+.+++++|.. ++++.+ .+..+..+|.+  ++.+..+
T Consensus       133 ~v~kE--~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~  208 (248)
T PF06977_consen  133 FVAKE--RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSL  208 (248)
T ss_dssp             EEEEE--SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEE
T ss_pred             EEEeC--CCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEE
Confidence            76655  444455555431001111100       01234468889999864 455566 88899999966  6666666


Q ss_pred             ecCCC--CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 014005          257 DMKPS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (432)
Q Consensus       257 ~~~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iw  295 (432)
                      .+...  .+...-...-.|+|+++| ++.+ .++-+..++|
T Consensus       209 ~L~~g~~gl~~~~~QpEGIa~d~~G-~LYI-vsEpNlfy~f  247 (248)
T PF06977_consen  209 SLDRGFHGLSKDIPQPEGIAFDPDG-NLYI-VSEPNLFYRF  247 (248)
T ss_dssp             E-STTGGG-SS---SEEEEEE-TT---EEE-EETTTEEEEE
T ss_pred             EeCCcccCcccccCCccEEEECCCC-CEEE-EcCCceEEEe
Confidence            44332  111122356789999998 6555 4455555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.29  E-value=0.027  Score=54.12  Aligned_cols=59  Identities=14%  Similarity=0.134  Sum_probs=41.3

Q ss_pred             CCCCcEEEEEeCCCeEEEEEccc----cccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee--CCeE
Q 014005          277 PIYCNLLAYSSSRGFVRLVDMRQ----SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNL  350 (432)
Q Consensus       277 p~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~--~~~i  350 (432)
                      ++| ++...  .++.|.+.|.++    +...   +..+.-              ......+.+||||++++.++  ++++
T Consensus       286 kdG-K~~~V--~gn~V~VID~~t~~~~~~~v---~~yIPV--------------GKsPHGV~vSPDGkylyVanklS~tV  345 (635)
T PRK02888        286 KAG-KFKTI--GGSKVPVVDGRKAANAGSAL---TRYVPV--------------PKNPHGVNTSPDGKYFIANGKLSPTV  345 (635)
T ss_pred             hCC-CEEEE--CCCEEEEEECCccccCCcce---EEEEEC--------------CCCccceEECCCCCEEEEeCCCCCcE
Confidence            455 44443  367899999887    2211   333333              35778999999999998853  3999


Q ss_pred             EEEec
Q 014005          351 KVFRY  355 (432)
Q Consensus       351 ~iwd~  355 (432)
                      .|.|+
T Consensus       346 SVIDv  350 (635)
T PRK02888        346 TVIDV  350 (635)
T ss_pred             EEEEC
Confidence            99999

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.28  E-value=0.0027  Score=60.29  Aligned_cols=78  Identities=15%  Similarity=0.172  Sum_probs=54.9

Q ss_pred             CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      +...|.=-+++..+++++.|+.-|.+.+|+..+++...                          ....+-.         
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~--------------------------~~~~~~~---------   76 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK--------------------------LKNEGAT---------   76 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc--------------------------ccccCcc---------
Confidence            34455555667889999999999999999988775320                          1111222         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK  148 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~  148 (432)
                         +.+..+..  +++..++|.|+..|.|.++-+..+.
T Consensus        77 ---~~~~~~~v--s~~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   77 ---GITCVRSV--SSVEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             ---ceEEEEEe--cchhHhhhhhcCCceEEeehhhccC
Confidence               44445555  7888888999999999999887643

>smart00320 WD40 WD40 repeats

Probab=97.25  E-value=0.00099  Score=37.99  Aligned_cols=32  Identities=34%  Similarity=0.399  Sum_probs=29.2

Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd  296 (432)
                      ..|...|+++.|++.+ .++++++.|+.+++||
T Consensus         9 ~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        9 KGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            5677889999999998 8999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.20  E-value=0.14  Score=47.96  Aligned_cols=149  Identities=8%  Similarity=0.043  Sum_probs=75.0

Q ss_pred             CEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC--CCcceecceeeccceEEEEeecccc
Q 014005          128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--SFAHGYHLEWTENMATKIANVGNSV  205 (432)
Q Consensus       128 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~v~i~d~~~~~  205 (432)
                      ..++.++.++.+...|..+++..-.........      .........+..+|  .+..++.+..  ++.+..+|..   
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~------~~~~~~~~~~~~sP~v~~~~vy~~~~--~g~l~ald~~---  274 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG------ATEIDRLVDVDTTPVVVGGVVYALAY--NGNLVALDLR---  274 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCC------ccchhcccccCCCcEEECCEEEEEEc--CCeEEEEECC---
Confidence            356667788999999988887432211110000      00000011111122  1233444444  6777777776   


Q ss_pred             cceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEE
Q 014005          206 HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (432)
Q Consensus       206 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  284 (432)
                      +++.+.....   .....+..  .+..+..+ .++.+..+|.+ +++.+...  .  . ... ....+....  + ..|+
T Consensus       275 tG~~~W~~~~---~~~~~~~~--~~~~vy~~~~~g~l~ald~~-tG~~~W~~--~--~-~~~-~~~~sp~v~--~-g~l~  339 (394)
T PRK11138        275 SGQIVWKREY---GSVNDFAV--DGGRIYLVDQNDRVYALDTR-GGVELWSQ--S--D-LLH-RLLTAPVLY--N-GYLV  339 (394)
T ss_pred             CCCEEEeecC---CCccCcEE--ECCEEEEEcCCCeEEEEECC-CCcEEEcc--c--c-cCC-CcccCCEEE--C-CEEE
Confidence            4444333211   11111222  34455556 89999999998 45443221  0  0 000 111122222  3 5677


Q ss_pred             EEeCCCeEEEEEcccccc
Q 014005          285 YSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       285 ~~~~dg~i~iwd~~~~~~  302 (432)
                      .++.||.+...|..+|+.
T Consensus       340 v~~~~G~l~~ld~~tG~~  357 (394)
T PRK11138        340 VGDSEGYLHWINREDGRF  357 (394)
T ss_pred             EEeCCCEEEEEECCCCCE
Confidence            889999999999999886

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.19  E-value=0.00075  Score=65.15  Aligned_cols=105  Identities=17%  Similarity=0.185  Sum_probs=79.0

Q ss_pred             EEEeCCCCCEEEEE-----cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005          223 SISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (432)
Q Consensus       223 ~~~~~~~~~~l~~~-----~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~  297 (432)
                      -..|+|...+++++     ..|.|.||--.  +++.+-        -...-.+++++|+|.. -+|+.|-.-|.+.+|..
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfadt--GEPqr~--------Vt~P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~   88 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFADT--GEPQRD--------VTYPVHATSLCWHPEE-FVLAQGWEMGVSDVQKT   88 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEecC--CCCCcc--------cccceehhhhccChHH-HHHhhccccceeEEEec
Confidence            45799999998865     36788887443  333221        1122336789999997 88999999999999998


Q ss_pred             cccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      .+.+.    -.....|             ..+|..+.||++|..|.+++. |.+.+|.+
T Consensus        89 ~~~e~----htv~~th-------------~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~  130 (1416)
T KOG3617|consen   89 NTTET----HTVVETH-------------PAPIQGLDWSHDGTVLMTLDNPGSVHLWRY  130 (1416)
T ss_pred             CCcee----eeeccCC-------------CCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence            86553    1233344             789999999999999999988 99999988

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.18  E-value=0.16  Score=46.78  Aligned_cols=213  Identities=14%  Similarity=0.240  Sum_probs=104.2

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCc-ccccccccc----ccccccccCCCCCcceecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF-VSSENTLLA----EKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~~~~~  188 (432)
                      ..+....|  +|+|+.++... ++.|.+++..++....+..-. ... ...+.--..    =+.-..+-|+|++++++..
T Consensus        43 ~~~~~~~~--sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~  118 (353)
T PF00930_consen   43 PKLQDAKW--SPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL  118 (353)
T ss_dssp             TTBSEEEE---SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred             ccccccee--ecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence            67888999  89999998886 578999998777544333211 110 000000000    0223567789999888766


Q ss_pred             eeecc----------------------------------ceEEEEeecccccceeeEE-ee---cCCCCCeeEEEeCCCC
Q 014005          189 EWTEN----------------------------------MATKIANVGNSVHARCQKV-YP---HAHDFNINSISNNSDC  230 (432)
Q Consensus       189 ~~~~~----------------------------------~~v~i~d~~~~~~~~~~~~-~~---~~~~~~i~~~~~~~~~  230 (432)
                      .....                                  -.+.++|+...   +.... ..   ......+..+.|.+++
T Consensus       119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~---~~~~~~~~~~~~~~~~yl~~v~W~~d~  195 (353)
T PF00930_consen  119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASG---KTTELDPPNSLNPQDYYLTRVGWSPDG  195 (353)
T ss_dssp             EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSST---CCCEE---HHHHTSSEEEEEEEEEETT
T ss_pred             EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCC---cEEEeeeccccCCCccCcccceecCCC
Confidence            53210                                  02333444321   11110 00   1234457778888888


Q ss_pred             CEEEEE---cC---CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEc-CCCCcEEEEEeCCCe--EEEEEccccc
Q 014005          231 ETFVSA---DD---LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGF--VRLVDMRQSA  301 (432)
Q Consensus       231 ~~l~~~---~d---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~dg~--i~iwd~~~~~  301 (432)
                      +.++..   .+   ..+.+.|.. ++.+-.......   .+.-..-....|. +++..++.....||-  |.+++...+.
T Consensus       196 ~~l~~~~~nR~q~~~~l~~~d~~-tg~~~~~~~e~~---~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~  271 (353)
T PF00930_consen  196 KRLWVQWLNRDQNRLDLVLCDAS-TGETRVVLEETS---DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK  271 (353)
T ss_dssp             EEEEEEEEETTSTEEEEEEEEEC-TTTCEEEEEEES---SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE
T ss_pred             cEEEEEEcccCCCEEEEEEEECC-CCceeEEEEecC---CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc
Confidence            744432   22   235556666 333222221111   1111222345554 666566666777775  4455555444


Q ss_pred             cccccceeecccccccCCccceeeeeccee-EEEEcCCCCEEE-Eee--C-CeEEEEec
Q 014005          302 LCDHSARILRDAAESHGSKSFFTEIIASIS-DIKFANDGQHLL-SRD--Y-MNLKVFRY  355 (432)
Q Consensus       302 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~-s~~--~-~~i~iwd~  355 (432)
                      .     +.+...             .-.|. -+.|+++++.|. ++.  . ..-.+|.+
T Consensus       272 ~-----~~lT~G-------------~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v  312 (353)
T PF00930_consen  272 P-----RQLTSG-------------DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV  312 (353)
T ss_dssp             E-----EESS-S-------------SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred             e-----eccccC-------------ceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence            2     333331             34553 477888877554 332  2 45555555

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.16  E-value=0.052  Score=39.51  Aligned_cols=65  Identities=17%  Similarity=0.184  Sum_probs=40.3

Q ss_pred             CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEc---CCCCcEEEEEeCCCeEE
Q 014005          218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH---PIYCNLLAYSSSRGFVR  293 (432)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~~l~~~~~dg~i~  293 (432)
                      .+.|.+++-... ..++.+ .+|+|-+|+..  .+..++        +. ...++++.+.   -+|..-|++|-.+|.|-
T Consensus        42 ~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi--------KS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   42 TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI--------KS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee--------cc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            346667766655 468888 99999999775  222221        11 1225555443   34446799999999875


Q ss_pred             E
Q 014005          294 L  294 (432)
Q Consensus       294 i  294 (432)
                      +
T Consensus       110 ~  110 (111)
T PF14783_consen  110 V  110 (111)
T ss_pred             e
Confidence            3

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.15  E-value=0.034  Score=55.43  Aligned_cols=71  Identities=11%  Similarity=0.156  Sum_probs=51.9

Q ss_pred             CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 014005          217 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV  295 (432)
Q Consensus       217 ~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iw  295 (432)
                      ......|++-+.+| ++|+| .+|.||+||.-  +...++      .+.+...+|..|..+.|| +++++.+ +..+-|+
T Consensus       576 ~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~--g~~AKT------~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi  644 (794)
T PF08553_consen  576 SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL--GKRAKT------ALPGLGDPIIGIDVTADG-KWILATC-KTYLLLI  644 (794)
T ss_pred             cCCCceEEEecCCc-eEEEEeCCCcEEeeccc--chhhhh------cCCCCCCCeeEEEecCCC-cEEEEee-cceEEEE
Confidence            34467788888888 67777 99999999954  322222      246778999999999999 7766444 5577788


Q ss_pred             Ecc
Q 014005          296 DMR  298 (432)
Q Consensus       296 d~~  298 (432)
                      +..
T Consensus       645 ~t~  647 (794)
T PF08553_consen  645 DTL  647 (794)
T ss_pred             EEe
Confidence            764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.13  E-value=0.25  Score=46.70  Aligned_cols=241  Identities=13%  Similarity=0.142  Sum_probs=123.7

Q ss_pred             cEEEEEEcCCCCEEEEe-c----ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           34 IVSAIEFDKTGDYLAVG-D----RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~-~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      .+....+||+|+++|.+ +    ....++++|+++++.+                          ...+..         
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l--------------------------~d~i~~---------  169 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL--------------------------PDGIEN---------  169 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE--------------------------EEEEEE---------
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc--------------------------CCcccc---------
Confidence            34467899999998864 2    2246999999998632                          011111         


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCC-----------CeEEEEEccCccee--eeeecCCCCcccccccccccccccc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTND-----------KTIKLWKVRDQKVK--KIKEMDHFPFVSSENTLLAEKNFMN  175 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d-----------~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~  175 (432)
                           ..-..+.|  .++++.|+....+           ..|..|++.+....  .+.......           .....
T Consensus       170 -----~~~~~~~W--~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~-----------~~~~~  231 (414)
T PF02897_consen  170 -----PKFSSVSW--SDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEP-----------FWFVS  231 (414)
T ss_dssp             -----EESEEEEE--CTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCT-----------TSEEE
T ss_pred             -----cccceEEE--eCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCC-----------cEEEE
Confidence                 11223899  7888877666433           24778888766533  332222211           11456


Q ss_pred             ccCCCCCcceecceeec-c-ceEEEEeeccc--ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE----cCCeEEEEeCC
Q 014005          176 EHNPPSFAHGYHLEWTE-N-MATKIANVGNS--VHARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLE  247 (432)
Q Consensus       176 ~~~~~~~~~~~~~~~~~-~-~~v~i~d~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~d~~i~lwd~~  247 (432)
                      +..+++++++....... + ..+.+.++...  ......... ....+....+... ++.+++..    .++.|.-.++.
T Consensus       232 ~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~-~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~  309 (414)
T PF02897_consen  232 VSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS-PREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLA  309 (414)
T ss_dssp             EEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE-ESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETT
T ss_pred             EEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe-CCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEeccc
Confidence            77789999887665533 3 56777777642  112222322 2233333334333 44444433    25677777777


Q ss_pred             CCCc--eeeEeecCCCCcCCCCc--ceEEEEEcCCCCcEEEEEeCCC--eEEEEEcc-ccccccccceeecccccccCCc
Q 014005          248 ISDQ--CFNIVDMKPSNMDDLTE--VITSAEFHPIYCNLLAYSSSRG--FVRLVDMR-QSALCDHSARILRDAAESHGSK  320 (432)
Q Consensus       248 ~~~~--~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~  320 (432)
                      ....  ....+       ..+..  .+..+....+  .+++....++  .|+++|+. +...     ..... +.     
T Consensus       310 ~~~~~~~~~~l-------~~~~~~~~l~~~~~~~~--~Lvl~~~~~~~~~l~v~~~~~~~~~-----~~~~~-p~-----  369 (414)
T PF02897_consen  310 DPSPAEWWTVL-------IPEDEDVSLEDVSLFKD--YLVLSYRENGSSRLRVYDLDDGKES-----REIPL-PE-----  369 (414)
T ss_dssp             STSGGGEEEEE-------E--SSSEEEEEEEEETT--EEEEEEEETTEEEEEEEETT-TEEE-----EEEES-SS-----
T ss_pred             ccccccceeEE-------cCCCCceeEEEEEEECC--EEEEEEEECCccEEEEEECCCCcEE-----eeecC-Cc-----
Confidence            4332  11122       33333  3555554432  4555555555  57888888 3322     22221 00     


Q ss_pred             cceeeeecceeEEEEcCCCCEEE-E-eeC---CeEEEEec
Q 014005          321 SFFTEIIASISDIKFANDGQHLL-S-RDY---MNLKVFRY  355 (432)
Q Consensus       321 ~~~~~~~~~v~~~~~s~dg~~l~-s-~~~---~~i~iwd~  355 (432)
                            .+.|..+...+++..+. + .+.   .+++-||+
T Consensus       370 ------~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~  403 (414)
T PF02897_consen  370 ------AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDL  403 (414)
T ss_dssp             ------SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEET
T ss_pred             ------ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence                  24455666556655433 2 222   78888887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.0022  Score=60.04  Aligned_cols=75  Identities=19%  Similarity=0.326  Sum_probs=62.9

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ...|.-+.|+|.-.++|++..+|.+.+..++-.+                            +.++.-|.          
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR----------------------------lwtip~p~----------   61 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQR----------------------------LWTIPIPG----------   61 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEeccce----------------------------eEeccCCC----------
Confidence            4578889999999999999999999988886433                            24555455          


Q ss_pred             hhccee-EEEEEEcCCCCEEEEEeCCCeEEEEEccCcc
Q 014005          112 IEEKIN-RVRWCAAPNGSMFILSTNDKTIKLWKVRDQK  148 (432)
Q Consensus       112 ~~~~v~-~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~  148 (432)
                        ..++ +++|  .|||+.++.|-.||+|++.|++++.
T Consensus        62 --~~v~~sL~W--~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   62 --ENVTASLCW--RPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             --Cccceeeee--cCCCCEEEEEecCCeEEEEEccCCC
Confidence              5566 9999  8999999999999999999999876

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.06  E-value=0.058  Score=48.90  Aligned_cols=149  Identities=14%  Similarity=0.070  Sum_probs=88.2

Q ss_pred             Ccceecceeec-------c-ceEEEEeeccc-c-cceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCc
Q 014005          182 FAHGYHLEWTE-------N-MATKIANVGNS-V-HARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ  251 (432)
Q Consensus       182 ~~~~~~~~~~~-------~-~~v~i~d~~~~-~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~  251 (432)
                      ..+++.|+...       . |.+.++++... . ..+..........+.|++++-- ++ .++++.++.|.+|++.....
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~~  119 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNSKT  119 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETTSS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEeecCEEEEEEccCccc
Confidence            46666665422       2 88999999852 0 0122222234557889988766 34 57777789999999994331


Q ss_pred             eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeeccee
Q 014005          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (432)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~  331 (432)
                      ....-      .......+.++...  + ++++.|.....+.++..+.....   +..+...   .        ...+++
T Consensus       120 l~~~~------~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~~~~---l~~va~d---~--------~~~~v~  176 (321)
T PF03178_consen  120 LLKKA------FYDSPFYITSLSVF--K-NYILVGDAMKSVSLLRYDEENNK---LILVARD---Y--------QPRWVT  176 (321)
T ss_dssp             EEEEE------EE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEEEETTTE----EEEEEEE---S--------S-BEEE
T ss_pred             chhhh------eecceEEEEEEecc--c-cEEEEEEcccCEEEEEEEccCCE---EEEEEec---C--------CCccEE
Confidence            22221      11122256666555  4 68889998888888865531110   1222210   0        035788


Q ss_pred             EEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          332 DIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       332 ~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      ++.|-+|+..++.++. |.+.++..
T Consensus       177 ~~~~l~d~~~~i~~D~~gnl~~l~~  201 (321)
T PF03178_consen  177 AAEFLVDEDTIIVGDKDGNLFVLRY  201 (321)
T ss_dssp             EEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred             EEEEecCCcEEEEEcCCCeEEEEEE
Confidence            9999866677777766 99999988

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.99  E-value=0.26  Score=44.71  Aligned_cols=182  Identities=10%  Similarity=0.063  Sum_probs=82.3

Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccC--CCCCcceecceee----------
Q 014005          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN--PPSFAHGYHLEWT----------  191 (432)
Q Consensus       124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~----------  191 (432)
                      +++++.++-......|+-.|+.+.+...+......-             .-...|  +.++..++.....          
T Consensus        89 s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~-------------~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~  155 (386)
T PF14583_consen   89 SPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDW-------------KGYGTWVANSDCTKLVGIEISREDWKPLTKW  155 (386)
T ss_dssp             -TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTE-------------EEEEEEEE-TTSSEEEEEEEEGGG-----SH
T ss_pred             ecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccc-------------ccccceeeCCCccEEEEEEEeehhccCcccc
Confidence            677777766655677888888887765554443211             111111  2223222221110          


Q ss_pred             --------c--cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE-E----cCCe-EEEEeCCCCCceeeE
Q 014005          192 --------E--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A----DDLR-INLWNLEISDQCFNI  255 (432)
Q Consensus       192 --------~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~----~d~~-i~lwd~~~~~~~~~~  255 (432)
                              +  ...|.--|+.   +++....+  .....+..+.|+|....+++ +    .+.. -+||-++..+...+.
T Consensus       156 ~~f~e~~~a~p~~~i~~idl~---tG~~~~v~--~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~  230 (386)
T PF14583_consen  156 KGFREFYEARPHCRIFTIDLK---TGERKVVF--EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKK  230 (386)
T ss_dssp             HHHHHHHHC---EEEEEEETT---T--EEEEE--EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EE
T ss_pred             HHHHHHHhhCCCceEEEEECC---CCceeEEE--ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCccee
Confidence                    0  1233334444   44443333  34567889999997665553 3    2332 367777655555544


Q ss_pred             eecCCCCcCCCCcceEEEEEcCCCCcEEEEEe----CCCeEEEEEccccccccccceeecccccccCCccceeeeeccee
Q 014005          256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (432)
Q Consensus       256 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~  331 (432)
                      +  ..   ......+..=-|.|||..+...+.    .+..|.-+|+.+++.     +.+..              ..+..
T Consensus       231 v--~~---~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-----~~~~~--------------~p~~~  286 (386)
T PF14583_consen  231 V--HR---RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-----RRLME--------------MPWCS  286 (386)
T ss_dssp             S--S------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-----EEEEE--------------E-SEE
T ss_pred             e--ec---CCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-----eEEEe--------------CCcee
Confidence            3  11   112344566678999944333332    233566677777653     22221              23455


Q ss_pred             EEEEcCCCCEEEE-eeC
Q 014005          332 DIKFANDGQHLLS-RDY  347 (432)
Q Consensus       332 ~~~~s~dg~~l~s-~~~  347 (432)
                      .+--++||++++. |++
T Consensus       287 H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  287 HFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EEEE-TTSSEEEEEE--
T ss_pred             eeEEcCCCCEEEecCCC
Confidence            6667899999887 443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.98  E-value=0.049  Score=50.44  Aligned_cols=156  Identities=12%  Similarity=0.096  Sum_probs=81.5

Q ss_pred             ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  194 (432)
                      .|+.++|  .++..-|++|...|.|.+|.....+...-....               .-....+.+-.   ..     ++
T Consensus         3 ~v~~vs~--a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~---------------~~~~~~~~~~~---~~-----~~   57 (395)
T PF08596_consen    3 SVTHVSF--APETLELAVGLESGEVVLFKFGKNQNYGNREQP---------------PDLDYNFRRFS---LN-----NS   57 (395)
T ss_dssp             -EEEEEE--ETTTTEEEEEETTS-EEEEEEEE---------------------------------S-----GG-----GS
T ss_pred             eEEEEEe--cCCCceEEEEccCCcEEEEEcccCCCCCccCCC---------------cccCccccccc---cc-----CC
Confidence            5788999  778888999999999999998765422100000               00000000000   00     11


Q ss_pred             eEEEEeecccc------cceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC-CcCCC
Q 014005          195 ATKIANVGNSV------HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-NMDDL  266 (432)
Q Consensus       195 ~v~i~d~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~-~~~~~  266 (432)
                      .-.+-|+....      .-.+...+ ....+.|++++.+.-| ++|.| .+|.+.+.|+| ....+..-.+... .-...
T Consensus        58 ~~~l~di~~r~~~~~~~gf~P~~l~-~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~R-GPavI~~~~i~~~~~~~~~  134 (395)
T PF08596_consen   58 PGKLTDISDRAPPSLKEGFLPLTLL-DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLR-GPAVIYNENIRESFLSKSS  134 (395)
T ss_dssp             S-SEEE-GGG--TT-SEEEEEEEEE----S-SEEEEEE-BTS-EEEEEETTSEEEEEETT-TTEEEEEEEGGG--T-SS-
T ss_pred             CcceEEehhhCCcccccccCchhhe-eccCCcEeEEecCCCc-EEEEEecCCcEEEEECC-CCeEEeecccccccccccc
Confidence            11222222110      11233334 4558899999998555 99999 99999999999 4444443323221 11223


Q ss_pred             CcceEEEEEcC-----CC--CcEEEEEeCCCeEEEEEcc
Q 014005          267 TEVITSAEFHP-----IY--CNLLAYSSSRGFVRLVDMR  298 (432)
Q Consensus       267 ~~~v~~~~~~p-----~~--~~~l~~~~~dg~i~iwd~~  298 (432)
                      ...++++.|..     |+  .-.|++|...|.+.+|.+.
T Consensus       135 ~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  135 SSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             ---EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred             ccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence            45688888862     11  2578889999999999876

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.92  E-value=0.28  Score=43.74  Aligned_cols=86  Identities=9%  Similarity=0.108  Sum_probs=53.5

Q ss_pred             eEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          117 NRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                      -.+..  +|+++.+++++          ..-.|.+||..+-....-..+...+.      .........++++.++++++
T Consensus        39 ~~~~~--spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R------~~~~~~~~~~~ls~dgk~~~  110 (342)
T PF06433_consen   39 GNVAL--SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR------AQVVPYKNMFALSADGKFLY  110 (342)
T ss_dssp             EEEEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--------BS--GGGEEE-TTSSEEE
T ss_pred             CceeE--CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch------heecccccceEEccCCcEEE
Confidence            34556  78999888753          34579999998876444333332100      00012334567889999999


Q ss_pred             cceeeccceEEEEeecccccceeeEEe
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVY  213 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~  213 (432)
                      ....++...|.+-|+.   ..+.+..+
T Consensus       111 V~N~TPa~SVtVVDl~---~~kvv~ei  134 (342)
T PF06433_consen  111 VQNFTPATSVTVVDLA---AKKVVGEI  134 (342)
T ss_dssp             EEEESSSEEEEEEETT---TTEEEEEE
T ss_pred             EEccCCCCeEEEEECC---CCceeeee
Confidence            9988888899999998   55555554

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.91  E-value=0.0032  Score=38.07  Aligned_cols=32  Identities=25%  Similarity=0.373  Sum_probs=29.0

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecC
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVG   63 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~   63 (432)
                      ...|.+++|+|..++||.|..+|.|.|+.++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            44799999999999999999999999999844

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.78  E-value=0.36  Score=43.01  Aligned_cols=207  Identities=14%  Similarity=0.121  Sum_probs=104.1

Q ss_pred             EEEEcCCCCEEEEe--cccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhc
Q 014005           37 AIEFDKTGDYLAVG--DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (432)
Q Consensus        37 ~~~fsp~g~~l~t~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  114 (432)
                      .++++.+|+++...  +--..|.|-|+..++..                           .++.-               
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv---------------------------~ei~~---------------  136 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVV---------------------------GEIDT---------------  136 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEE---------------------------EEEEG---------------
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCcee---------------------------eeecC---------------
Confidence            35677888877653  33456888888776532                           22211               


Q ss_pred             ceeEEEEEEcCCCCEEEEEeCCCeEEEEEcc-CcceeeeeecCCCCcccccccccccccc-ccccCCCCCcceecceeec
Q 014005          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNF-MNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~  192 (432)
                       --|.-..|+.+ +.|.+-|.||.+.-..+. .|+......-.+++         .+.++ ..-++...+..++--+.  
T Consensus       137 -PGC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~---------~~dp~f~~~~~~~~~~~~~F~Sy--  203 (342)
T PF06433_consen  137 -PGCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDP---------DDDPLFEHPAYSRDGGRLYFVSY--  203 (342)
T ss_dssp             -TSEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEEESST---------TTS-B-S--EEETTTTEEEEEBT--
T ss_pred             -CCEEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeeccccCC---------CCcccccccceECCCCeEEEEec--
Confidence             11333345443 357788899999999886 44433211111111         00111 11122222222222233  


Q ss_pred             cceEEEEeecccccceeeEEeec---------CCCCCeeEEEeCCCCCEEEEE-c--------CC--eEEEEeCCCCCce
Q 014005          193 NMATKIANVGNSVHARCQKVYPH---------AHDFNINSISNNSDCETFVSA-D--------DL--RINLWNLEISDQC  252 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~-~--------d~--~i~lwd~~~~~~~  252 (432)
                      +|.|+--|+... ..+....+..         .-.+.-.-+++++..+.|.+- .        |+  .|.++|+. +++.
T Consensus       204 ~G~v~~~dlsg~-~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~-t~kr  281 (342)
T PF06433_consen  204 EGNVYSADLSGD-SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK-THKR  281 (342)
T ss_dssp             TSEEEEEEETTS-SEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT-TTEE
T ss_pred             CCEEEEEeccCC-cccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC-CCeE
Confidence            666666666543 1122222210         012334457777655444442 1        22  35666777 5666


Q ss_pred             eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEE-eCCCeEEEEEccccccccccceeecc
Q 014005          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRD  312 (432)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (432)
                      +..++        ....+.++..+.+...+|++. ..++.+.+||..+|+.    ++.+++
T Consensus       282 v~Ri~--------l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~----~~~~~~  330 (342)
T PF06433_consen  282 VARIP--------LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL----VRSIEQ  330 (342)
T ss_dssp             EEEEE--------EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E----EEEE--
T ss_pred             EEEEe--------CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE----Eeehhc
Confidence            66551        123477999999875566554 4689999999999987    566554

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.61  E-value=0.18  Score=45.75  Aligned_cols=145  Identities=14%  Similarity=0.105  Sum_probs=86.3

Q ss_pred             CCEEEEEeC----------CCeEEEEEccCc-----ceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          127 GSMFILSTN----------DKTIKLWKVRDQ-----KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       127 ~~~l~s~~~----------d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                      ..+++.|+.          .|.|.++++...     +++.+.....            +++|.++..- .+. ++.+.  
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~------------~g~V~ai~~~-~~~-lv~~~--  105 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV------------KGPVTAICSF-NGR-LVVAV--  105 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE------------SS-EEEEEEE-TTE-EEEEE--
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee------------cCcceEhhhh-CCE-EEEee--
Confidence            467777743          289999999874     3443333222            2566666554 233 33333  


Q ss_pred             ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                       ++.+.+|++.....-.....+  .....+.++...  +++++.| ....+.++..+.....+..+     .......++
T Consensus       106 -g~~l~v~~l~~~~~l~~~~~~--~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~v-----a~d~~~~~v  175 (321)
T PF03178_consen  106 -GNKLYVYDLDNSKTLLKKAFY--DSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILV-----ARDYQPRWV  175 (321)
T ss_dssp             -TTEEEEEEEETTSSEEEEEEE---BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEE-----EEESS-BEE
T ss_pred             -cCEEEEEEccCcccchhhhee--cceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEE-----EecCCCccE
Confidence             679999999854311222222  223355555554  5688899 67777777555224434433     113335678


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMR  298 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~  298 (432)
                      +++.|-+++ ..++.+..+|.+.++...
T Consensus       176 ~~~~~l~d~-~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  176 TAAEFLVDE-DTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEEEE-SS-SEEEEEETTSEEEEEEE-
T ss_pred             EEEEEecCC-cEEEEEcCCCeEEEEEEC
Confidence            999999887 689999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.53  E-value=0.54  Score=41.96  Aligned_cols=148  Identities=12%  Similarity=0.015  Sum_probs=81.7

Q ss_pred             cccccccCCCCCcceeccee-----ec--cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeE
Q 014005          171 KNFMNEHNPPSFAHGYHLEW-----TE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRI  241 (432)
Q Consensus       171 ~~i~~~~~~~~~~~~~~~~~-----~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i  241 (432)
                      ...++....|++.+-++...     ..  ...-.+|.+..  .+..++.+ ..+-..-+.++||||++.+..+  ..+.|
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p--~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT~~~~i  187 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP--DGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADTPANRI  187 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC--CCCEEEee-cCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence            34445556666655544332     11  11124454441  12333333 4556677899999999999888  45788


Q ss_pred             EEEeCCC-CCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC-eEEEEEccccccccccceeecccccccCC
Q 014005          242 NLWNLEI-SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-FVRLVDMRQSALCDHSARILRDAAESHGS  319 (432)
Q Consensus       242 ~lwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~h~~~~~~  319 (432)
                      .-|++.. .......-  .........+..-.++...+| ++.+++..+| .|.+|+.. |++    +..+.-.      
T Consensus       188 ~r~~~d~~~g~~~~~~--~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v~~~~pd-G~l----~~~i~lP------  253 (307)
T COG3386         188 HRYDLDPATGPIGGRR--GFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRVVRFNPD-GKL----LGEIKLP------  253 (307)
T ss_pred             EEEecCcccCccCCcc--eEEEccCCCCCCCceEEeCCC-CEEEecccCCceEEEECCC-CcE----EEEEECC------
Confidence            8887761 11110000  000112234556677888888 7665555554 89999988 665    4555551      


Q ss_pred             ccceeeeecceeEEEEcC-CCCEE
Q 014005          320 KSFFTEIIASISDIKFAN-DGQHL  342 (432)
Q Consensus       320 ~~~~~~~~~~v~~~~~s~-dg~~l  342 (432)
                             ...+++++|-- +.+.|
T Consensus       254 -------~~~~t~~~FgG~~~~~L  270 (307)
T COG3386         254 -------VKRPTNPAFGGPDLNTL  270 (307)
T ss_pred             -------CCCCccceEeCCCcCEE
Confidence                   25677777753 44433

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.41  E-value=0.4  Score=47.08  Aligned_cols=113  Identities=9%  Similarity=0.076  Sum_probs=60.2

Q ss_pred             cccccccCCCCCcceecceeeccceEEEEeecccccce-ee---EEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeC
Q 014005          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR-CQ---KVYPHAHDFNINSISNNSDCETFVSADDLRINLWNL  246 (432)
Q Consensus       171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~-~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~  246 (432)
                      +.|..+.|+|++..++...   ++.|.+--+.....+. .+   +.+.......+.++.|..++.+++...++...+|.+
T Consensus       448 g~Issl~wSpDG~RiA~i~---~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v  524 (591)
T PRK13616        448 GPISELQLSRDGVRAAMII---GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYV  524 (591)
T ss_pred             CCcCeEEECCCCCEEEEEE---CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEE
Confidence            5799999999999887654   4566553222111221 11   112123344468899999998553335444445555


Q ss_pred             CCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEE
Q 014005          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  294 (432)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  294 (432)
                      ...+.....+     .-......+..++-+++  . ++....+|.+.+
T Consensus       525 ~vDG~~~~~~-----~~~n~~~~v~~vaa~~~--~-iyv~~~~g~~~l  564 (591)
T PRK13616        525 NLDGSNSDAL-----PSRNLSAPVVAVAASPS--T-VYVTDARAVLQL  564 (591)
T ss_pred             ecCCcccccc-----CCCCccCceEEEecCCc--e-EEEEcCCceEEe
Confidence            4334332211     00123456777777763  3 444566664443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.38  E-value=0.51  Score=39.93  Aligned_cols=65  Identities=15%  Similarity=0.280  Sum_probs=44.7

Q ss_pred             CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEE
Q 014005           44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA  123 (432)
Q Consensus        44 g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~  123 (432)
                      |++++.|...|.+.+.+.+++.+.                           ..+..-             +.|-+-+-+ 
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~---------------------------w~f~~~-------------~~vk~~a~~-  101 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQI---------------------------WNFVIL-------------ETVKVRAQC-  101 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhhe---------------------------eeeeeh-------------hhhccceEE-
Confidence            567788888888888888887533                           222222             222222222 


Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCcce
Q 014005          124 APNGSMFILSTNDKTIKLWKVRDQKV  149 (432)
Q Consensus       124 s~~~~~l~s~~~d~~i~iwd~~~~~~  149 (432)
                      .+++.++..|+.|++.+..|.++...
T Consensus       102 d~~~glIycgshd~~~yalD~~~~~c  127 (354)
T KOG4649|consen  102 DFDGGLIYCGSHDGNFYALDPKTYGC  127 (354)
T ss_pred             cCCCceEEEecCCCcEEEecccccce
Confidence            57899999999999999999987663

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.21  E-value=0.021  Score=34.59  Aligned_cols=31  Identities=16%  Similarity=0.503  Sum_probs=28.1

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccC
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD  146 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~  146 (432)
                      ..|..++|  +|...++|.++.+|.|.++.+..
T Consensus        12 ~~v~~~~w--~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   12 SRVSCMSW--CPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CcEEEEEE--CCCCCEEEEEECCCeEEEEECCC
Confidence            67999999  78999999999999999999843

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.21  E-value=0.94  Score=41.27  Aligned_cols=183  Identities=13%  Similarity=0.058  Sum_probs=76.6

Q ss_pred             eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee-ec-cc-eEEEEeecccccceeeEEe-
Q 014005          138 TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW-TE-NM-ATKIANVGNSVHARCQKVY-  213 (432)
Q Consensus       138 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~-~~-~v~i~d~~~~~~~~~~~~~-  213 (432)
                      .|.--|+.+|+.+.+..-.              ..+.-+.|+|....++.-+. .+ +. .-+||-++..  +...+.+ 
T Consensus       169 ~i~~idl~tG~~~~v~~~~--------------~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d--g~~~~~v~  232 (386)
T PF14583_consen  169 RIFTIDLKTGERKVVFEDT--------------DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD--GSNVKKVH  232 (386)
T ss_dssp             EEEEEETTT--EEEEEEES--------------S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT--S---EESS
T ss_pred             eEEEEECCCCceeEEEecC--------------ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC--CCcceeee
Confidence            3444566666655544322              34556677776555554433 11 22 2377877753  2222222 


Q ss_pred             ecCCCCCeeEEEeCCCCCEEEE-E--c---CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe
Q 014005          214 PHAHDFNINSISNNSDCETFVS-A--D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  287 (432)
Q Consensus       214 ~~~~~~~i~~~~~~~~~~~l~~-~--~---d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  287 (432)
                      +......+..=-|.|+|..+.- +  .   +..|.-+|.. ++......         ...+....-.++|+ ++++-=+
T Consensus       233 ~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~-t~~~~~~~---------~~p~~~H~~ss~Dg-~L~vGDG  301 (386)
T PF14583_consen  233 RRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD-TGERRRLM---------EMPWCSHFMSSPDG-KLFVGDG  301 (386)
T ss_dssp             ---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT-T--EEEEE---------EE-SEEEEEE-TTS-SEEEEEE
T ss_pred             cCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC-CCCceEEE---------eCCceeeeEEcCCC-CEEEecC
Confidence            1122233444568899987664 2  2   3356666777 33322211         11124456667888 7766433


Q ss_pred             CCC----------------eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC--Ce
Q 014005          288 SRG----------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MN  349 (432)
Q Consensus       288 ~dg----------------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~--~~  349 (432)
                      .|.                -|+++++..+..     ..+..|..+......  .....=-...|+|||++++-.++  |.
T Consensus       302 ~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~-----~~l~~h~~sw~v~~~--~~q~~hPhp~FSPDgk~VlF~Sd~~G~  374 (386)
T PF14583_consen  302 GDAPVDVADAGGYKIENDPWIYLFDVEAGRF-----RKLARHDTSWKVLDG--DRQVTHPHPSFSPDGKWVLFRSDMEGP  374 (386)
T ss_dssp             -------------------EEEEEETTTTEE-----EEEEE-------BTT--BSSTT----EE-TTSSEEEEEE-TTSS
T ss_pred             CCCCccccccccceecCCcEEEEeccccCce-----eeeeeccCcceeecC--CCccCCCCCccCCCCCEEEEECCCCCC
Confidence            332                456677765543     333333110000000  00001135799999999886544  66


Q ss_pred             EEEEe
Q 014005          350 LKVFR  354 (432)
Q Consensus       350 i~iwd  354 (432)
                      ..||=
T Consensus       375 ~~vY~  379 (386)
T PF14583_consen  375 PAVYL  379 (386)
T ss_dssp             -EEEE
T ss_pred             ccEEE
Confidence            66653

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.04  E-value=0.89  Score=39.40  Aligned_cols=181  Identities=13%  Similarity=0.142  Sum_probs=110.4

Q ss_pred             cccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCC
Q 014005          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS  249 (432)
Q Consensus       171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~  249 (432)
                      ..+.++.|+|+.+.+.+...  ...-.++ +..  .+..+++++...-.....+.+..++++.++- .++.+.++.++..
T Consensus        86 ~nvS~LTynp~~rtLFav~n--~p~~iVE-lt~--~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTN--KPAAIVE-LTK--EGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccceeeCCCcceEEEecC--CCceEEE-Eec--CCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            45889999999998887764  2222222 221  5566666643444556678888888888888 8999999988833


Q ss_pred             CceeeEe--ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccc-cccCC-ccceee
Q 014005          250 DQCFNIV--DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA-ESHGS-KSFFTE  325 (432)
Q Consensus       250 ~~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~-~~~~~-~~~~~~  325 (432)
                      ...+..-  .++.......+...-.++|+|.. ..|..+-+.+=+.||....+.      ..+..|. ..+.- +..+  
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~------~~l~~~~~~~~~~~~~~f--  231 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSP------SSLSVHASLDPTADRDLF--  231 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCC------cccccccccCcccccceE--
Confidence            2322211  11122222225668899999998 777778777777777766332      2233320 00110 0111  


Q ss_pred             eecceeEEEEcCC-CCEEEEeeC-CeEEEEec--CcceeEeecce
Q 014005          326 IIASISDIKFAND-GQHLLSRDY-MNLKVFRY--EPVMTLSFCGI  366 (432)
Q Consensus       326 ~~~~v~~~~~s~d-g~~l~s~~~-~~i~iwd~--~~~~~~~~~~~  366 (432)
                       -..|+++.|.+. +.+|+-++. +.+.-.|.  +++..+..+..
T Consensus       232 -~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g  275 (316)
T COG3204         232 -VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKG  275 (316)
T ss_pred             -eeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccC
Confidence             346888999875 555665655 77777787  56666665553

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.03  E-value=1.3  Score=41.26  Aligned_cols=199  Identities=9%  Similarity=0.056  Sum_probs=124.4

Q ss_pred             EEEEEcCCCCE-EEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhc
Q 014005           36 SAIEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (432)
Q Consensus        36 ~~~~fsp~g~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  114 (432)
                      ..+++++.+.. .++...++.|.+.|..+.+..                          .....+              .
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~--------------------------~~~~vG--------------~  116 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL--------------------------GSIPVG--------------L  116 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCccccee--------------------------eEeeec--------------c
Confidence            46778888774 445555678999996654422                          001111              2


Q ss_pred             ceeEEEEEEcCCCCEEEEEeC---CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          115 KINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                      .-..+++  ++++..+..+..   ++++.+.|-.+.+.... .....            .+ ..++++|++..++... .
T Consensus       117 ~P~~~~~--~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~vG~------------~P-~~~a~~p~g~~vyv~~-~  179 (381)
T COG3391         117 GPVGLAV--DPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IPVGN------------TP-TGVAVDPDGNKVYVTN-S  179 (381)
T ss_pred             CCceEEE--CCCCCEEEEEecccCCceEEEEeCCCCeEEEE-EecCC------------Cc-ceEEECCCCCeEEEEe-c
Confidence            3456888  888887777644   68888888887764443 11111            12 7789999999777665 2


Q ss_pred             ccceEEEEeecccccceeeE-Ee--ecCCCCCeeEEEeCCCCCEEEEE-c-C--CeEEEEeCCCCCceeeEeecCCCCcC
Q 014005          192 ENMATKIANVGNSVHARCQK-VY--PHAHDFNINSISNNSDCETFVSA-D-D--LRINLWNLEISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~-~~--~~~~~~~i~~~~~~~~~~~l~~~-~-d--~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (432)
                      .++.+.+.|....   ...+ .-  ...-......+.++|++..+.+. . +  +.+...|.. .+...... .    ..
T Consensus       180 ~~~~v~vi~~~~~---~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~-~~~v~~~~-~----~~  250 (381)
T COG3391         180 DDNTVSVIDTSGN---SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA-TGNVTATD-L----PV  250 (381)
T ss_pred             CCCeEEEEeCCCc---ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCC-CceEEEec-c----cc
Confidence            3788889886632   2221 00  01233455678999999977776 3 2  588888888 44443321 0    01


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEcccccc
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSAL  302 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~  302 (432)
                      +.. ....+..+|++ ..+.... ..+.+.+.|..+...
T Consensus       251 ~~~-~~~~v~~~p~g-~~~yv~~~~~~~V~vid~~~~~v  287 (381)
T COG3391         251 GSG-APRGVAVDPAG-KAAYVANSQGGTVSVIDGATDRV  287 (381)
T ss_pred             ccC-CCCceeECCCC-CEEEEEecCCCeEEEEeCCCCce
Confidence            122 45678999999 7776664 448899999887664

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.95  E-value=0.033  Score=55.88  Aligned_cols=103  Identities=14%  Similarity=0.178  Sum_probs=68.8

Q ss_pred             CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccc
Q 014005          229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA  307 (432)
Q Consensus       229 ~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  307 (432)
                      .+..++.| +.|.+-..|+..+-..+.       .-..-.++|++++|+.+| ..++.|-.+|.|.+||+..+++    +
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~-------~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~----l  165 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLH-------QNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKI----L  165 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhh-------cCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcc----e
Confidence            44567777 888888888873211111       113445789999999999 9999999999999999998776    5


Q ss_pred             eeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       308 ~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      +.+..|..          ....|-.+.+..++..+.+++. |.  +|++
T Consensus       166 ~~i~e~~a----------p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  166 KVITEHGA----------PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eeeeecCC----------ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            66665410          0123333444455556666655 54  7877

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.89  E-value=0.032  Score=45.93  Aligned_cols=105  Identities=12%  Similarity=0.098  Sum_probs=65.1

Q ss_pred             CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce-EEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccc
Q 014005          229 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS  306 (432)
Q Consensus       229 ~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  306 (432)
                      -+..+++| .+|.|++|.....+.....+       ..-...| +.+.--.++ .+..+++.||.|+.|++.-++.    
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~-------~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~----  136 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRV-------CSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKV----  136 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhh-------hcccccceecccccccc-ceeEEeccCCceeeeccccCce----
Confidence            35578888 99999999887333332221       1112222 223333344 6888899999999999987665    


Q ss_pred             ceeecccccccCCccceeeee-cceeEEEEcCCCCEEEEe---eCCeEEEEecCcc
Q 014005          307 ARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSR---DYMNLKVFRYEPV  358 (432)
Q Consensus       307 ~~~~~~h~~~~~~~~~~~~~~-~~v~~~~~s~dg~~l~s~---~~~~i~iwd~~~~  358 (432)
                      +.....|             . .++..+..+..+++|+.+   .+..++.|++.++
T Consensus       137 ~g~~g~h-------------~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  137 LGYVGQH-------------NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             eeeeccc-------------cCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            3444444             2 455555566666777664   3377888888333

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.82  E-value=0.3  Score=45.56  Aligned_cols=69  Identities=12%  Similarity=0.146  Sum_probs=49.9

Q ss_pred             CCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005          219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (432)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~  297 (432)
                      ....|.+-..+| ++++| .+|.|++||.- .......       +++...+|..+..+.+| +++++ ..+..+-+.++
T Consensus       431 ~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~~AKTA-------lPgLG~~I~hVdvtadG-Kwil~-Tc~tyLlLi~t  499 (644)
T KOG2395|consen  431 NNFSCFATTESG-YIVVGSLKGDIRLYDRI-GRRAKTA-------LPGLGDAIKHVDVTADG-KWILA-TCKTYLLLIDT  499 (644)
T ss_pred             cccceeeecCCc-eEEEeecCCcEEeehhh-hhhhhhc-------ccccCCceeeEEeeccC-cEEEE-ecccEEEEEEE
Confidence            456677777777 66666 99999999984 3332222       47888999999999999 76654 34667777776


Q ss_pred             c
Q 014005          298 R  298 (432)
Q Consensus       298 ~  298 (432)
                      .
T Consensus       500 ~  500 (644)
T KOG2395|consen  500 L  500 (644)
T ss_pred             e
Confidence            5

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.81  E-value=1.1  Score=38.62  Aligned_cols=199  Identities=8%  Similarity=0.042  Sum_probs=104.0

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCC--eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                      .-...+.|  ..++.++-+.+.-|  .|+.+|+.+++......+...-  ....-...++.+..+.|.            
T Consensus        45 aFTQGL~~--~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~--FgEGit~~~d~l~qLTWk------------  108 (264)
T PF05096_consen   45 AFTQGLEF--LDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY--FGEGITILGDKLYQLTWK------------  108 (264)
T ss_dssp             -EEEEEEE--EETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEETTEEEEEESS------------
T ss_pred             ccCccEEe--cCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc--cceeEEEECCEEEEEEec------------
Confidence            45567888  46787888877666  7999999998855443332110  000000001111122221            


Q ss_pred             ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                       ++...+||..   +-+.+..+.-  .+.=..++  .++..|+.+ ....++.+|.+ +-+..+.+.+...  ...-..+
T Consensus       109 -~~~~f~yd~~---tl~~~~~~~y--~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~-~f~~~~~i~V~~~--g~pv~~L  177 (264)
T PF05096_consen  109 -EGTGFVYDPN---TLKKIGTFPY--PGEGWGLT--SDGKRLIMSDGSSRLYFLDPE-TFKEVRTIQVTDN--GRPVSNL  177 (264)
T ss_dssp             -SSEEEEEETT---TTEEEEEEE---SSS--EEE--ECSSCEEEE-SSSEEEEE-TT-T-SEEEEEE-EET--TEE---E
T ss_pred             -CCeEEEEccc---cceEEEEEec--CCcceEEE--cCCCEEEEECCccceEEECCc-ccceEEEEEEEEC--CEECCCc
Confidence             5677888887   5566666622  23444555  466777777 78899999987 4445554433211  1112346


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccccc---CCccceeeeecceeEEEEcCC-CCEEEEee
Q 014005          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH---GSKSFFTEIIASISDIKFAND-GQHLLSRD  346 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~---~~~~~~~~~~~~v~~~~~s~d-g~~l~s~~  346 (432)
                      +.+.|- +| .+.|-.=....|...|..+|+.    ...+.-....+   ..... .....-.+.+++.|. +++++||-
T Consensus       178 NELE~i-~G-~IyANVW~td~I~~Idp~tG~V----~~~iDls~L~~~~~~~~~~-~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  178 NELEYI-NG-KIYANVWQTDRIVRIDPETGKV----VGWIDLSGLRPEVGRDKSR-QPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEEEE-TT-EEEEEETTSSEEEEEETTT-BE----EEEEE-HHHHHHHTSTTST---TTS-EEEEEEETTTTEEEEEET
T ss_pred             EeEEEE-cC-EEEEEeCCCCeEEEEeCCCCeE----EEEEEhhHhhhcccccccc-cccCCeeEeEeEeCCCCEEEEEeC
Confidence            777776 45 6666565677788888888875    23322110000   00000 000356789999886 45667775

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.76  E-value=1.7  Score=40.47  Aligned_cols=195  Identities=10%  Similarity=0.075  Sum_probs=122.0

Q ss_pred             EEEEEEcCCCCE-EEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee-ccce
Q 014005          118 RVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT-ENMA  195 (432)
Q Consensus       118 ~l~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~  195 (432)
                      .+..  ++.+.. ++....++.|.+.|.............              .....+++++++..++..... .++.
T Consensus        78 ~i~v--~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG--------------~~P~~~~~~~~~~~vYV~n~~~~~~~  141 (381)
T COG3391          78 GVAV--NPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG--------------LGPVGLAVDPDGKYVYVANAGNGNNT  141 (381)
T ss_pred             ceee--CCCCCeEEEecCCCCeEEEEcCcccceeeEeeec--------------cCCceEEECCCCCEEEEEecccCCce
Confidence            4566  667764 444455689999997665533332221              245678889998877776653 2567


Q ss_pred             EEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEE
Q 014005          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (432)
Q Consensus       196 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  273 (432)
                      +.+.|..   +.+.......+. .+ ..++++|+|..+...  .++.+.+.|.+ .....+ -  .+.....-......+
T Consensus       142 vsvid~~---t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~-~~~v~~-~--~~~~~~~~~~~P~~i  212 (381)
T COG3391         142 VSVIDAA---TNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS-GNSVVR-G--SVGSLVGVGTGPAGI  212 (381)
T ss_pred             EEEEeCC---CCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCC-Ccceec-c--ccccccccCCCCceE
Confidence            7777766   445555442232 23 789999999977776  69999999977 333221 0  000011222345778


Q ss_pred             EEcCCCCcEEEEEe-CC--CeEEEEEcccccccccccee-ecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eC-
Q 014005          274 EFHPIYCNLLAYSS-SR--GFVRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-  347 (432)
Q Consensus       274 ~~~p~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~-  347 (432)
                      .++|++ +.+.... .+  +.+...|..++...    .. ...-            .. ....+..+|+|+++... .. 
T Consensus       213 ~v~~~g-~~~yV~~~~~~~~~v~~id~~~~~v~----~~~~~~~------------~~-~~~~v~~~p~g~~~yv~~~~~  274 (381)
T COG3391         213 AVDPDG-NRVYVANDGSGSNNVLKIDTATGNVT----ATDLPVG------------SG-APRGVAVDPAGKAAYVANSQG  274 (381)
T ss_pred             EECCCC-CEEEEEeccCCCceEEEEeCCCceEE----Eeccccc------------cC-CCCceeECCCCCEEEEEecCC
Confidence            999999 5444433 33  58999998887642    21 1110            01 45678999999988876 33 


Q ss_pred             CeEEEEec
Q 014005          348 MNLKVFRY  355 (432)
Q Consensus       348 ~~i~iwd~  355 (432)
                      +.+.+-|.
T Consensus       275 ~~V~vid~  282 (381)
T COG3391         275 GTVSVIDG  282 (381)
T ss_pred             CeEEEEeC
Confidence            88888888

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.74  E-value=0.25  Score=48.17  Aligned_cols=90  Identities=19%  Similarity=0.386  Sum_probs=58.9

Q ss_pred             cccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccccc
Q 014005            9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSH   88 (432)
Q Consensus         9 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (432)
                      .....|.....+...        -...+-+.-|.-++..++-+...++.|||...+...                     
T Consensus        14 ~~~~~w~~t~~~~T~--------i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE---------------------   64 (631)
T PF12234_consen   14 SNKIEWLLTSTFETG--------ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLE---------------------   64 (631)
T ss_pred             CCeEEEEEEEEEecC--------CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEE---------------------
Confidence            456677777555421        113334444455555444444558999999876421                     


Q ss_pred             CCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 014005           89 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV  144 (432)
Q Consensus        89 p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~  144 (432)
                          ....+ ...            +.|.++.|...|+++.+++.+..+.|.++.-
T Consensus        65 ----~~~~f-~~~------------~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   65 ----YEESF-SED------------DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             ----Eeeee-cCC------------CceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence                22233 222            7899999988899999999999999999864

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.58  E-value=0.71  Score=43.92  Aligned_cols=152  Identities=11%  Similarity=0.098  Sum_probs=85.3

Q ss_pred             ccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC----CC-EEEEEcCCeEEEEeC
Q 014005          172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD----CE-TFVSADDLRINLWNL  246 (432)
Q Consensus       172 ~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~-~l~~~~d~~i~lwd~  246 (432)
                      ++..++|......+.+.-..-+|.+++-|..      .+     +.-..|..+.|.|-    .. +||+-....|.+|.+
T Consensus        21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGds~------vi-----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL   89 (671)
T PF15390_consen   21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGDSK------VI-----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL   89 (671)
T ss_pred             cccceEecCCCEEEEEeeeeeCCccccCCcc------Ee-----eccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence            4556666554444444333224444433322      22     33457889999985    32 344448899999998


Q ss_pred             CCCCc----ee--eEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc
Q 014005          247 EISDQ----CF--NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK  320 (432)
Q Consensus       247 ~~~~~----~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~  320 (432)
                      .....    .+  ++-++.    +...--...+.|||.. .+|+.-..+..-.+++.+....-  ....+..        
T Consensus        90 ~~s~~e~~K~l~sQtcEi~----e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~sr--VkaDi~~--------  154 (671)
T PF15390_consen   90 CPSTTERNKLLMSQTCEIR----EPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSR--VKADIKT--------  154 (671)
T ss_pred             ccCccccccceeeeeeecc----CCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCce--EEEeccC--------
Confidence            62111    00  111000    0111112467899998 77777666655556666633210  0233444        


Q ss_pred             cceeeeecceeEEEEcCCCCEEEEe--eCCeEEEEec
Q 014005          321 SFFTEIIASISDIKFANDGQHLLSR--DYMNLKVFRY  355 (432)
Q Consensus       321 ~~~~~~~~~v~~~~~s~dg~~l~s~--~~~~i~iwd~  355 (432)
                            .+-|.+.+|.+||+.|+.+  +.=.-++||-
T Consensus       155 ------~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  155 ------SGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             ------CceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence                  5789999999999988775  3345678887

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.51  E-value=1.7  Score=38.82  Aligned_cols=127  Identities=11%  Similarity=0.049  Sum_probs=76.5

Q ss_pred             CCeeEEEeCCCCCEEEEE-cC---------CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeC
Q 014005          219 FNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  288 (432)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~-~d---------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  288 (432)
                      ...+.....|+|.+.++. ..         ..-.+|.+.-.+...+.+       ..+-..-+.++||||+ +.|..+..
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~-------~~~~~~~NGla~SpDg-~tly~aDT  182 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL-------DDDLTIPNGLAFSPDG-KTLYVADT  182 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee-------cCcEEecCceEECCCC-CEEEEEeC
Confidence            567788899999877765 40         011334333113333332       4444556899999999 66666654


Q ss_pred             -CCeEEEEEccc--cccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eC-CeEEEEec--CcceeE
Q 014005          289 -RGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKVFRY--EPVMTL  361 (432)
Q Consensus       289 -dg~i~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~-~~i~iwd~--~~~~~~  361 (432)
                       .+.|.-|++..  +....+....+..            ...+..-.++...+|.+-+++ .. +.|..|+.  +++..+
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~------------~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i  250 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGRRGFVDFD------------EEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEI  250 (307)
T ss_pred             CCCeEEEEecCcccCccCCcceEEEcc------------CCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEE
Confidence             47888887752  2221110111111            013556678888999888654 33 49999999  788888


Q ss_pred             eecc
Q 014005          362 SFCG  365 (432)
Q Consensus       362 ~~~~  365 (432)
                      ..+.
T Consensus       251 ~lP~  254 (307)
T COG3386         251 KLPV  254 (307)
T ss_pred             ECCC
Confidence            7774

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.44  E-value=0.067  Score=53.83  Aligned_cols=37  Identities=22%  Similarity=0.350  Sum_probs=33.4

Q ss_pred             CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCC
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNT   67 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~   67 (432)
                      -..+|++++|+.+|..++.|-.+|.|.+||...++..
T Consensus       129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l  165 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL  165 (1206)
T ss_pred             cCCcceeeEecCCCceeccccCCCcEEEEEccCCcce
Confidence            4679999999999999999999999999999987644

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.29  E-value=0.076  Score=31.10  Aligned_cols=32  Identities=31%  Similarity=0.547  Sum_probs=27.4

Q ss_pred             cceEEEEEcCCCC--cEEEEEeCCCeEEEEEccc
Q 014005          268 EVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQ  299 (432)
Q Consensus       268 ~~v~~~~~~p~~~--~~l~~~~~dg~i~iwd~~~  299 (432)
                      +.|+++.|+|...  .+|+.+-..|.|.|+|+|+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3589999998763  5899999999999999995

It contains a characteristic DLL sequence motif.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.27  E-value=1.2  Score=43.55  Aligned_cols=117  Identities=16%  Similarity=0.135  Sum_probs=70.8

Q ss_pred             CCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEc--CCCCcEEEEEeCCCeEEEE
Q 014005          219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLV  295 (432)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~dg~i~iw  295 (432)
                      ..+.-+.-+.-++..++. +...+.|||.+ .+. ++.-    ..+ ...+.|..+.|.  |++ +.+++-|....|.++
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~-~~~-lE~~----~~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~  101 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTR-SGV-LEYE----ESF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLY  101 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcC-CcE-EEEe----eee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEE
Confidence            345555556655555555 67789999999 343 2211    011 346779999885  677 777778888889888


Q ss_pred             Ecc-----ccccccccceeecccccccCCccceeeee-cceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          296 DMR-----QSALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       296 d~~-----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~-~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                      --.     ........++.+.-           ..+. .+|.+..|.++|.+++.++ +.+.|+|-
T Consensus       102 ~Q~R~dy~~~~p~w~~i~~i~i-----------~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk  155 (631)
T PF12234_consen  102 TQLRYDYTNKGPSWAPIRKIDI-----------SSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDK  155 (631)
T ss_pred             EccchhhhcCCcccceeEEEEe-----------ecCCCCCccceeEecCCeEEEEeC-CEEEEECC
Confidence            532     11111111222211           1112 5789999999997666544 78888876

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.25  E-value=1.7  Score=42.91  Aligned_cols=165  Identities=10%  Similarity=0.008  Sum_probs=85.1

Q ss_pred             cccccccCCCCCcceecceee----ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC-CeEEEE
Q 014005          171 KNFMNEHNPPSFAHGYHLEWT----ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-LRINLW  244 (432)
Q Consensus       171 ~~i~~~~~~~~~~~~~~~~~~----~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d-~~i~lw  244 (432)
                      ..+...+.++++..++.....    .+..-.+|-....  +...... .+.  ....-.|+|+|..+++. +. ..+++.
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt-~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVL-EGH--SLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--Ccceeee-cCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence            356678889998877655421    1333344433321  1122222 232  37788999999888877 33 233343


Q ss_pred             eCCCCCceeeEeecCCCCcC-CCCcceEEEEEcCCCCcEEEEEeCCCeEEE---EEccccccccccceeecccccccCCc
Q 014005          245 NLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRL---VDMRQSALCDHSARILRDAAESHGSK  320 (432)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i---wd~~~~~~~~~~~~~~~~h~~~~~~~  320 (432)
                      +-. ....+..+++...... .....|..+.||||| ..+|... +|.|.+   -....|..-......+..        
T Consensus       425 ~~~-~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~--------  493 (591)
T PRK13616        425 RDP-ATGQLARTPVDASAVASRVPGPISELQLSRDG-VRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGP--------  493 (591)
T ss_pred             ccC-CCceEEEEeccCchhhhccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEEEeCCCCceeecccEEeec--------
Confidence            333 1222222222111111 234569999999999 6666554 567766   333333210000011111        


Q ss_pred             cceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          321 SFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       321 ~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                          .....+.++.|.+++.+++....+...+|.+
T Consensus       494 ----~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v  524 (591)
T PRK13616        494 ----GLGDTAVSLDWRTGDSLVVGRSDPEHPVWYV  524 (591)
T ss_pred             ----ccCCccccceEecCCEEEEEecCCCCceEEE
Confidence                1123468899999998665443333445555

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.21  E-value=1.3  Score=38.24  Aligned_cols=148  Identities=9%  Similarity=0.019  Sum_probs=81.6

Q ss_pred             cccCCCCCcceecceeeccceEEEEeecccccceeeEEeec-CCCCCeeEEEeCCCCCEEEEE-c-----CCeEEEEeCC
Q 014005          175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPH-AHDFNINSISNNSDCETFVSA-D-----DLRINLWNLE  247 (432)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~-~-----d~~i~lwd~~  247 (432)
                      .++++|.....+.-..-+.....++|...   .+...++.. .....--.=.|+|||++|... .     -|.|-+||.+
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~---~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNG---AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCC---CcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            45555555444433332344566777663   222222201 001111123589999999876 3     3679999998


Q ss_pred             CCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC------------------CeEEEEEcccccccccccee
Q 014005          248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR------------------GFVRLVDMRQSALCDHSARI  309 (432)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------------------g~i~iwd~~~~~~~~~~~~~  309 (432)
                      ..-+.+-       .+..|.-....+.+.+|| +.++.+...                  -++.+.|..+|.+..+  .+
T Consensus       149 ~~fqrvg-------E~~t~GiGpHev~lm~DG-rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liek--h~  218 (366)
T COG3490         149 EGFQRVG-------EFSTHGIGPHEVTLMADG-RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK--HT  218 (366)
T ss_pred             cccceec-------ccccCCcCcceeEEecCC-cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhh--cc
Confidence            3333333       236676667889999999 777765421                  1234445445544321  11


Q ss_pred             ecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005          310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (432)
Q Consensus       310 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~  346 (432)
                      +..           ..+..+|..++..+||+.++.+.
T Consensus       219 Lp~-----------~l~~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         219 LPA-----------SLRQLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             Cch-----------hhhhcceeeeeeCCCCcEEEEEE
Confidence            110           01246788899999998777643

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.17  E-value=2.1  Score=37.74  Aligned_cols=249  Identities=11%  Similarity=0.077  Sum_probs=125.8

Q ss_pred             CCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEE
Q 014005           42 KTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW  121 (432)
Q Consensus        42 p~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~  121 (432)
                      ..++.|+.|..+| +.+++.......                           .... +.            ..|..+..
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~---------------------------~~i~-~~------------~~I~ql~v   43 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKP---------------------------TRIL-KL------------SSITQLSV   43 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccc---------------------------eeEe-ec------------ceEEEEEE
Confidence            4578899998888 888888322211                           1111 11            45888888


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEccCcceeeeee-cCCCCcccccccccccccccccc---CCCCCcceecceeeccceEE
Q 014005          122 CAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKE-MDHFPFVSSENTLLAEKNFMNEH---NPPSFAHGYHLEWTENMATK  197 (432)
Q Consensus       122 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~v~  197 (432)
                      .  ++-+.+++-+ |+.+.++++..-....... .......+..........+...+   -......++.+ .  ...+.
T Consensus        44 l--~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~--kk~i~  117 (275)
T PF00780_consen   44 L--PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-V--KKKIL  117 (275)
T ss_pred             e--cccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-E--CCEEE
Confidence            4  4555555443 5999999987543222110 00000000000000011222222   11122222222 2  55888


Q ss_pred             EEeecccc-cc-eeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCC-----cCCCCcce
Q 014005          198 IANVGNSV-HA-RCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN-----MDDLTEVI  270 (432)
Q Consensus       198 i~d~~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~-----~~~~~~~v  270 (432)
                      +|...... .. +..+.+  .-...+.+++|.  ++.++.|..+...+.|++ ++.....++.....     ......++
T Consensus       118 i~~~~~~~~~f~~~~ke~--~lp~~~~~i~~~--~~~i~v~~~~~f~~idl~-~~~~~~l~~~~~~~~~~~~~~~~~~~~  192 (275)
T PF00780_consen  118 IYEWNDPRNSFSKLLKEI--SLPDPPSSIAFL--GNKICVGTSKGFYLIDLN-TGSPSELLDPSDSSSSFKSRNSSSKPL  192 (275)
T ss_pred             EEEEECCcccccceeEEE--EcCCCcEEEEEe--CCEEEEEeCCceEEEecC-CCCceEEeCccCCcchhhhcccCCCce
Confidence            88877531 22 344444  345788899998  567888855557788998 45444443221111     01112234


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeE
Q 014005          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL  350 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i  350 (432)
                      ..+.... + .+|++.  |..-.+.|. .|+...  ...++=              ...+.++++.  ..||+.-.++.|
T Consensus       193 ~~~~~~~-~-e~Ll~~--~~~g~fv~~-~G~~~r--~~~i~W--------------~~~p~~~~~~--~pyli~~~~~~i  249 (275)
T PF00780_consen  193 GIFQLSD-N-EFLLCY--DNIGVFVNK-NGEPSR--KSTIQW--------------SSAPQSVAYS--SPYLIAFSSNSI  249 (275)
T ss_pred             EEEEeCC-c-eEEEEe--cceEEEEcC-CCCcCc--ccEEEc--------------CCchhEEEEE--CCEEEEECCCEE
Confidence            4444443 3 555543  333334443 344321  011111              2345566664  458888766789


Q ss_pred             EEEec---CcceeEeecc
Q 014005          351 KVFRY---EPVMTLSFCG  365 (432)
Q Consensus       351 ~iwd~---~~~~~~~~~~  365 (432)
                      .||++   +.++++..+.
T Consensus       250 EV~~~~~~~lvQ~i~~~~  267 (275)
T PF00780_consen  250 EVRSLETGELVQTIPLPN  267 (275)
T ss_pred             EEEECcCCcEEEEEECCC
Confidence            99999   6777776654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.91  E-value=1.1  Score=42.60  Aligned_cols=153  Identities=9%  Similarity=0.002  Sum_probs=82.6

Q ss_pred             cceeEEEEEEcCCCCEEEEEe---CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc----cee
Q 014005          114 EKINRVRWCAAPNGSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA----HGY  186 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~  186 (432)
                      .++..++|   .||+.++-..   ..|.+++=|     ...+..+               +-|..+.|.|-+.    -+.
T Consensus        20 HPvhGlaW---TDGkqVvLT~L~l~~gE~kfGd-----s~viGqF---------------EhV~GlsW~P~~~~~~paLL   76 (671)
T PF15390_consen   20 HPVHGLAW---TDGKQVVLTDLQLHNGEPKFGD-----SKVIGQF---------------EHVHGLSWAPPCTADTPALL   76 (671)
T ss_pred             ccccceEe---cCCCEEEEEeeeeeCCccccCC-----ccEeecc---------------ceeeeeeecCcccCCCCceE
Confidence            67899999   5776654442   234443322     1122222               3566777776532    222


Q ss_pred             cceeeccceEEEEeeccccc--ceeeEEeecCCCC----CeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecC
Q 014005          187 HLEWTENMATKIANVGNSVH--ARCQKVYPHAHDF----NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK  259 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~--~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~  259 (432)
                      ....  ...|.+|.+.....  .+.+..-......    -...+.|+|....|++- ....-.+++++..+..++.-   
T Consensus        77 AVQH--kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD---  151 (671)
T PF15390_consen   77 AVQH--KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD---  151 (671)
T ss_pred             EEec--cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe---
Confidence            2223  67899999863322  2222111011111    12346799998888765 33333456776444444421   


Q ss_pred             CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  298 (432)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~  298 (432)
                          -...+.|.|.+|.+||.+++++.+..=.-++||-.
T Consensus       152 ----i~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  152 ----IKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ----ccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence                23456799999999994444444443345788744

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.88  E-value=4  Score=39.50  Aligned_cols=24  Identities=13%  Similarity=0.008  Sum_probs=19.9

Q ss_pred             CEEEEEeCCCeEEEEEccCcceee
Q 014005          128 SMFILSTNDKTIKLWKVRDQKVKK  151 (432)
Q Consensus       128 ~~l~s~~~d~~i~iwd~~~~~~~~  151 (432)
                      ..++.++.++.|.-+|.++++..-
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W  134 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVW  134 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEee
Confidence            578888889999999999988443

The alignment model contains an 8-bladed beta-propeller.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.68  E-value=2.7  Score=36.57  Aligned_cols=169  Identities=12%  Similarity=0.129  Sum_probs=101.5

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      ..+.++.|  +|+.+.|++......-.++=-..|++.....+.+-            .....+.+.-.+.+.++-..  +
T Consensus        86 ~nvS~LTy--np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~------------~DpE~Ieyig~n~fvi~dER--~  149 (316)
T COG3204          86 ANVSSLTY--NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF------------SDPETIEYIGGNQFVIVDER--D  149 (316)
T ss_pred             ccccceee--CCCcceEEEecCCCceEEEEecCCceEEEeccccc------------CChhHeEEecCCEEEEEehh--c
Confidence            66999999  88998888887777666665566665444333321            23445666666777666655  6


Q ss_pred             ceEEEEeecccccceeeE----Ee-e-cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecC-C-CCcC
Q 014005          194 MATKIANVGNSVHARCQK----VY-P-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK-P-SNMD  264 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~----~~-~-~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~-~-~~~~  264 (432)
                      +.+.+..+..........    .+ . .........++|.|..+.|..+ .-.-+.||.+......+..-... + ....
T Consensus       150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~  229 (316)
T COG3204         150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRD  229 (316)
T ss_pred             ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccc
Confidence            677776665321111111    11 0 1114567789999999888888 66666776665222222110000 0 0001


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  298 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~  298 (432)
                      -.-..|.++.|++....+|+-+.+++.+.-.|..
T Consensus       230 ~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         230 LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             eEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence            1123578889997665788888888888888866

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.63  E-value=1.4  Score=44.28  Aligned_cols=92  Identities=16%  Similarity=0.276  Sum_probs=52.1

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccc--cccc--cccceeecccccccCCccce-eeeecceeEEEEcCC---C
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ--SALC--DHSARILRDAAESHGSKSFF-TEIIASISDIKFAND---G  339 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~--~~~~--~~~~~~~~~h~~~~~~~~~~-~~~~~~v~~~~~s~d---g  339 (432)
                      -.|..+.++|+| .+||..|..|. .|..+..  |+..  ..-...... ...+....+| ......|..+.|+|.   +
T Consensus        85 f~v~~i~~n~~g-~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~C-rt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   85 FEVHQISLNPTG-SLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINC-RTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             eeEEEEEECCCC-CEEEEEcCCcE-EEEEeccccCccccccCCCcceeE-EEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            468999999999 99998888764 4444431  1100  000000000 0000011111 122458899999997   3


Q ss_pred             CEEEE-eeCCeEEEEec----CcceeEe
Q 014005          340 QHLLS-RDYMNLKVFRY----EPVMTLS  362 (432)
Q Consensus       340 ~~l~s-~~~~~i~iwd~----~~~~~~~  362 (432)
                      ..|+. .+|+++|+||+    .+.+.+.
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             CeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence            56665 57799999999    4555554

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA02713 hypothetical protein; Provisional

Probab=94.35  E-value=2  Score=42.28  Aligned_cols=30  Identities=20%  Similarity=0.475  Sum_probs=21.2

Q ss_pred             CCCEEEEEeCCC-----eEEEEEccCcceeeeeec
Q 014005          126 NGSMFILSTNDK-----TIKLWKVRDQKVKKIKEM  155 (432)
Q Consensus       126 ~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~  155 (432)
                      ++...+.|+.++     .+..||..+..+..+..+
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~m  385 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDM  385 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCC
Confidence            677778887653     488899988876655443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.29  E-value=6.8  Score=39.62  Aligned_cols=34  Identities=29%  Similarity=0.649  Sum_probs=27.1

Q ss_pred             cceeEEEEEE-cCCCCEEEEEeCCCeEEEEEccCc
Q 014005          114 EKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQ  147 (432)
Q Consensus       114 ~~v~~l~~~~-s~~~~~l~s~~~d~~i~iwd~~~~  147 (432)
                      ..|..+.|+| +.++..|+.=..|+++++||+...
T Consensus       147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            6789999965 234678888888999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.22  E-value=0.2  Score=29.42  Aligned_cols=31  Identities=32%  Similarity=0.504  Sum_probs=26.0

Q ss_pred             CcEEEEEEcCC-C--CEEEEecccceEEEEEecC
Q 014005           33 DIVSAIEFDKT-G--DYLAVGDRGGRVILFETVG   63 (432)
Q Consensus        33 ~~V~~~~fsp~-g--~~l~t~~~dg~i~iw~~~~   63 (432)
                      ++|.++.|+|. +  ++|+.+-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            37899999984 4  5888888889999999985

It contains a characteristic DLL sequence motif.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.12  E-value=3.3  Score=35.31  Aligned_cols=140  Identities=9%  Similarity=0.034  Sum_probs=86.6

Q ss_pred             CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEE
Q 014005           44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA  123 (432)
Q Consensus        44 g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~  123 (432)
                      ..+++.|+..+.+.--|..+++..                         ..+.+               +.+|.+-+.. 
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~-------------------------We~il---------------g~RiE~sa~v-   61 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLI-------------------------WEAIL---------------GVRIECSAIV-   61 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEE-------------------------eehhh---------------CceeeeeeEE-
Confidence            456788899999988888887642                         00111               1344443332 


Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCccccccccccccccc-cccCCCCCcceecceeeccceEEEEee
Q 014005          124 APNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFM-NEHNPPSFAHGYHLEWTENMATKIANV  201 (432)
Q Consensus       124 s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~v~i~d~  201 (432)
                        -|++++.|+..|.+++.+.++|. ...+...               +.|. .....+++..+..++.  |+.....|.
T Consensus        62 --vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~---------------~~vk~~a~~d~~~glIycgsh--d~~~yalD~  122 (354)
T KOG4649|consen   62 --VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL---------------ETVKVRAQCDFDGGLIYCGSH--DGNFYALDP  122 (354)
T ss_pred             --ECCEEEEEEccCcEEEEEecchhheeeeeeh---------------hhhccceEEcCCCceEEEecC--CCcEEEecc
Confidence              37789999999999999999984 3222222               2222 2345678888999988  999999998


Q ss_pred             cccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEEcCCeEEEEeCC
Q 014005          202 GNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSADDLRINLWNLE  247 (432)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~d~~i~lwd~~  247 (432)
                      +   +..|+... +...+-..+-+..| ++...++...|.+.--..+
T Consensus       123 ~---~~~cVyks-kcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen  123 K---TYGCVYKS-KCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             c---ccceEEec-ccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence            8   66777665 33333333445556 4443333355554443433

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.05  E-value=5.5  Score=37.61  Aligned_cols=113  Identities=12%  Similarity=0.174  Sum_probs=65.6

Q ss_pred             EEEEEEcCCCCEEEEE-eCCC----eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          118 RVRWCAAPNGSMFILS-TNDK----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       118 ~l~~~~s~~~~~l~s~-~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      ...+  +|+++++|.+ +..|    .+++.|+.+++...-. +.             ......+.|.+++..++......
T Consensus       128 ~~~~--Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~-------------~~~~~~~~W~~d~~~~~y~~~~~  191 (414)
T PF02897_consen  128 GFSV--SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IE-------------NPKFSSVSWSDDGKGFFYTRFDE  191 (414)
T ss_dssp             EEEE--TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EE-------------EEESEEEEECTTSSEEEEEECST
T ss_pred             eeeE--CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-cc-------------ccccceEEEeCCCCEEEEEEeCc
Confidence            3445  9999998876 3333    5999999998633211 10             01122388888876655544322


Q ss_pred             ---------cceEEEEeecccccceeeEEeecCCCCC-eeEEEeCCCCCEEEEE--c--C-CeEEEEeCC
Q 014005          193 ---------NMATKIANVGNSVHARCQKVYPHAHDFN-INSISNNSDCETFVSA--D--D-LRINLWNLE  247 (432)
Q Consensus       193 ---------~~~v~i~d~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~--~--d-~~i~lwd~~  247 (432)
                               ...|..|.+...... ....+....... ...+..++++++++..  .  + ..+.+.|+.
T Consensus       192 ~~~~~~~~~~~~v~~~~~gt~~~~-d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~  260 (414)
T PF02897_consen  192 DQRTSDSGYPRQVYRHKLGTPQSE-DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD  260 (414)
T ss_dssp             TTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred             ccccccCCCCcEEEEEECCCChHh-CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence                     335777777644222 223442222233 6788899999998754  2  3 457777887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.99  E-value=5.2  Score=37.15  Aligned_cols=105  Identities=10%  Similarity=0.030  Sum_probs=52.1

Q ss_pred             cceEEEEeecccccceeeEEeecCCCC-CeeEEEeC--CCCCEEEEE--cCCeEEEEeCCCCCc--eeeEeecCCCCcCC
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDF-NINSISNN--SDCETFVSA--DDLRINLWNLEISDQ--CFNIVDMKPSNMDD  265 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~-~i~~~~~~--~~~~~l~~~--~d~~i~lwd~~~~~~--~~~~~~~~~~~~~~  265 (432)
                      ...+.+||+.   +.+.++++..+..+ ....+.|.  |+..+-.+|  -.++|..|-....+.  .-+++++.+....+
T Consensus       221 G~~l~vWD~~---~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~  297 (461)
T PF05694_consen  221 GHSLHVWDWS---TRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG  297 (461)
T ss_dssp             --EEEEEETT---TTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred             cCeEEEEECC---CCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence            4589999999   78888887444333 35567665  444443333  455665554421232  22333333321111


Q ss_pred             ------------CCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccc
Q 014005          266 ------------LTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSA  301 (432)
Q Consensus       266 ------------~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~  301 (432)
                                  -..-|+.|.+|.|. ++|..+. .+|.|+.||+..-.
T Consensus       298 ~~lp~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  298 WILPEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             S---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SSTT
T ss_pred             ccccccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCCCC
Confidence                        13558999999998 7776655 78999999998643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.98  E-value=0.17  Score=41.91  Aligned_cols=104  Identities=14%  Similarity=0.045  Sum_probs=57.6

Q ss_pred             CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeE-EEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecC
Q 014005          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINS-ISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK  259 (432)
Q Consensus       182 ~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~  259 (432)
                      ...++.|+.  +|.|.+|.....  +.....+ ......|.+ +....++.+..++ .||.|+.|++. ..+.+-..   
T Consensus        70 ~~~~~vG~~--dg~v~~~n~n~~--g~~~d~~-~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~-p~k~~g~~---  140 (238)
T KOG2444|consen   70 SAKLMVGTS--DGAVYVFNWNLE--GAHSDRV-CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK-PNKVLGYV---  140 (238)
T ss_pred             CceEEeecc--cceEEEecCCcc--chHHHhh-hcccccceeccccccccceeEEeccCCceeeeccc-cCceeeee---
Confidence            345566666  888888877621  1111111 111222322 2223345566777 99999999998 55544433   


Q ss_pred             CCCcCCCC-cceEEEEEcCCCCcEEEEE--eCCCeEEEEEccc
Q 014005          260 PSNMDDLT-EVITSAEFHPIYCNLLAYS--SSRGFVRLVDMRQ  299 (432)
Q Consensus       260 ~~~~~~~~-~~v~~~~~~p~~~~~l~~~--~~dg~i~iwd~~~  299 (432)
                          ..|. .++.....+..+ ..++.+  |.|..++.|++..
T Consensus       141 ----g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  141 ----GQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ----ccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence                4444 444444444444 566666  6677777777653

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.93  E-value=3.9  Score=35.54  Aligned_cols=153  Identities=9%  Similarity=0.017  Sum_probs=81.5

Q ss_pred             ceeEEEEEEcCCCCEEEEEe---CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          115 KINRVRWCAAPNGSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                      .+.+.++  +++++.++...   ....+.++...... .....               ...+....|++++........ 
T Consensus        25 ~~~s~Av--S~dg~~~A~v~~~~~~~~L~~~~~~~~~-~~~~~---------------g~~l~~PS~d~~g~~W~v~~~-   85 (253)
T PF10647_consen   25 DVTSPAV--SPDGSRVAAVSEGDGGRSLYVGPAGGPV-RPVLT---------------GGSLTRPSWDPDGWVWTVDDG-   85 (253)
T ss_pred             cccceEE--CCCCCeEEEEEEcCCCCEEEEEcCCCcc-eeecc---------------CCccccccccCCCCEEEEEcC-
Confidence            5778888  88998776655   33445555543322 12111               146777788888544433332 


Q ss_pred             ccceEEEEe-ecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE----cCCeEEEEeCCCCCce-eeEeecCCC-CcC
Q 014005          192 ENMATKIAN-VGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQC-FNIVDMKPS-NMD  264 (432)
Q Consensus       192 ~~~~v~i~d-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~d~~i~lwd~~~~~~~-~~~~~~~~~-~~~  264 (432)
                       +...+++. ... ........-.......|.+++++|||..++..    .++.|.+=-+.....- -..+ ..+. ...
T Consensus        86 -~~~~~~~~~~~~-g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l-~~~~~~~~  162 (253)
T PF10647_consen   86 -SGGVRVVRDSAS-GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL-TGPRRVAP  162 (253)
T ss_pred             -CCceEEEEecCC-CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee-ccceEecc
Confidence             33444442 111 12222222101112289999999999988865    2677776654322211 1111 0111 112


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEeCCC
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSSSRG  290 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~~dg  290 (432)
                      .....++.+.|.+++ .+++.+...+
T Consensus       163 ~~~~~v~~v~W~~~~-~L~V~~~~~~  187 (253)
T PF10647_consen  163 PLLSDVTDVAWSDDS-TLVVLGRSAG  187 (253)
T ss_pred             cccCcceeeeecCCC-EEEEEeCCCC
Confidence            334678999999998 7666655443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.89  E-value=0.096  Score=51.80  Aligned_cols=172  Identities=10%  Similarity=0.148  Sum_probs=95.3

Q ss_pred             cCCCCCeeEEEeCCC-CCEEEEEcCCeEEEEeCCC-CCceeeEeecCCCCcCCCCcceEEEEEcC---CCCcEEEEEeCC
Q 014005          215 HAHDFNINSISNNSD-CETFVSADDLRINLWNLEI-SDQCFNIVDMKPSNMDDLTEVITSAEFHP---IYCNLLAYSSSR  289 (432)
Q Consensus       215 ~~~~~~i~~~~~~~~-~~~l~~~~d~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~~l~~~~~d  289 (432)
                      ++-.+.+-.++|-.. ...+. -.-|.+.+||++. .++....+.+++.  ......+.-+.|.|   +. -++.++-.+
T Consensus       129 kgf~G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~--~p~gs~~~~V~wcp~~~~~-~~ic~~~~~  204 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLEVTPI--TPYGSDPQLVSWCPIAVNK-VYICYGLKG  204 (1283)
T ss_pred             hcCCCCcccccccccCChHHH-HHhhhhheeehHhhccccccceEEeec--CcCCCCcceeeeccccccc-ceeeeccCC
Confidence            445566666666421 11111 1346777888752 1222222222222  22233445566655   43 567777788


Q ss_pred             CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec--------Cccee
Q 014005          290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY--------EPVMT  360 (432)
Q Consensus       290 g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~--------~~~~~  360 (432)
                      +.|++.+.....     ...+.+|...+....+|.+..-.+.  ..||||..+|.+ .||.+++|.+        +++..
T Consensus       205 ~~i~lL~~~ra~-----~~l~rsHs~~~~d~a~~~~g~~~l~--~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhe  277 (1283)
T KOG1916|consen  205 GEIRLLNINRAL-----RSLFRSHSQRVTDMAFFAEGVLKLA--SLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHE  277 (1283)
T ss_pred             CceeEeeechHH-----HHHHHhcCCCcccHHHHhhchhhhe--eeCCCCcEEEEeecCCccceeeeeeeccccHhhhhc
Confidence            899988876543     2556667433333333322222232  389999999985 6799999988        56666


Q ss_pred             EeecceeeeehhhhhcccccccccceeeE--------EEEeeccc-ceeeeeccC
Q 014005          361 LSFCGIYVWILRQLQHSRFMSIYALSCVI--------YIITTLYL-INLSALSAG  406 (432)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~~~-~~i~~~~~~  406 (432)
                      .+.|+.         +.+.|.++-+..+.        ++++++.- ..+++|...
T Consensus       278 wkphd~---------~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a  323 (1283)
T KOG1916|consen  278 WKPHDK---------HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEA  323 (1283)
T ss_pred             cCCCCC---------CCceeeeeccccccCCccceeEEEEecccCCcceeEeecc
Confidence            666652         45666654333211        45666554 458888743

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=93.84  E-value=5.9  Score=37.28  Aligned_cols=55  Identities=11%  Similarity=-0.020  Sum_probs=37.7

Q ss_pred             CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCC
Q 014005          218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  279 (432)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  279 (432)
                      .+.+..+++||+++++|.- .+|.+.+...+. .+.+..+++      ........+.|.-+.
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~------~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDT------DSKSPPKQMAWCGND  271 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeec------CcCCCCcEEEEECCC
Confidence            4589999999999999988 889999988773 344443322      122345566676543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.81  E-value=4.6  Score=35.97  Aligned_cols=116  Identities=16%  Similarity=0.108  Sum_probs=61.1

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEE
Q 014005          215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  293 (432)
Q Consensus       215 ~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~  293 (432)
                      ....+.+..+..+++|++++++ ......-||-...  .....      .......|..+.|.|++ .+.+.+ ..|.|+
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~--~w~~~------~r~~~~riq~~gf~~~~-~lw~~~-~Gg~~~  210 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT--TWQPH------NRNSSRRIQSMGFSPDG-NLWMLA-RGGQIQ  210 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S--S-EEE------E--SSS-EEEEEE-TTS--EEEEE-TTTEEE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc--cceEE------ccCccceehhceecCCC-CEEEEe-CCcEEE
Confidence            4455778899999999999999 4555556776521  11111      03345789999999998 665544 888888


Q ss_pred             EEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEE
Q 014005          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKV  352 (432)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~i  352 (432)
                      .=+....      ...+..+ ..+...     ..-.+.+++|.++++..|+|..|.+..
T Consensus       211 ~s~~~~~------~~~w~~~-~~~~~~-----~~~~~ld~a~~~~~~~wa~gg~G~l~~  257 (302)
T PF14870_consen  211 FSDDPDD------GETWSEP-IIPIKT-----NGYGILDLAYRPPNEIWAVGGSGTLLV  257 (302)
T ss_dssp             EEE-TTE------EEEE----B-TTSS-------S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred             EccCCCC------ccccccc-cCCccc-----CceeeEEEEecCCCCEEEEeCCccEEE
Confidence            8772211      1333321 111100     023588999999999999887665543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.59  E-value=3.4  Score=38.31  Aligned_cols=154  Identities=8%  Similarity=-0.046  Sum_probs=75.3

Q ss_pred             cccccccCCCCCcceeccee----------eccceEEEEeec-ccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCC
Q 014005          171 KNFMNEHNPPSFAHGYHLEW----------TENMATKIANVG-NSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDL  239 (432)
Q Consensus       171 ~~i~~~~~~~~~~~~~~~~~----------~~~~~v~i~d~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~  239 (432)
                      .....++|.+++...+....          .....|.+++-. ..........+ .......+.+++.+++ .+++....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-a~~l~~p~Gi~~~~~G-lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-AEELSMVTGLAVAVGG-VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-ecCCCCccceeEecCC-EEEeCCCe
Confidence            34556777777776655321          001255555432 11122223344 3334456889999988 44443444


Q ss_pred             eEEEEeCCCCC----ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC-------------------CeEEEEE
Q 014005          240 RINLWNLEISD----QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-------------------GFVRLVD  296 (432)
Q Consensus       240 ~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-------------------g~i~iwd  296 (432)
                      ..++.|.+..+    +...++.--+.....+....+.++|.||| .+.++-+..                   |.|.-+|
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            33444554211    11111110000001123457889999998 665544421                   3344444


Q ss_pred             ccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                      ..+++.     ..+..             .......++|+++|+++++-
T Consensus       171 pdg~~~-----e~~a~-------------G~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       171 PDGGKL-----RVVAH-------------GFQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             cCCCeE-----EEEec-------------CcCCCccceECCCCCEEEEc
Confidence            443321     22211             12345789999999998874

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.41  E-value=3  Score=38.65  Aligned_cols=123  Identities=10%  Similarity=0.054  Sum_probs=60.8

Q ss_pred             eeEEEEEEcCCCCEEEEEe--------------------CCCeEEEEEccCcceeeeeecCCCCcccccccccccccccc
Q 014005          116 INRVRWCAAPNGSMFILST--------------------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (432)
Q Consensus       116 v~~l~~~~s~~~~~l~s~~--------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  175 (432)
                      -+...|  .|..+.++|+.                    ...++.+||+.+.+..+...+....           .-...
T Consensus       183 gYDfw~--qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g-----------~~pLE  249 (461)
T PF05694_consen  183 GYDFWY--QPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG-----------QMPLE  249 (461)
T ss_dssp             ---EEE--ETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE-----------EEEEE
T ss_pred             CCCeEE--cCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC-----------CceEE
Confidence            345666  56777788764                    2468999999999877666554221           22333


Q ss_pred             cc--CCCCCcceecceeeccceEEEEeecccccceeeEEee--c----C------------CCCCeeEEEeCCCCCEEEE
Q 014005          176 EH--NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYP--H----A------------HDFNINSISNNSDCETFVS  235 (432)
Q Consensus       176 ~~--~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~--~----~------------~~~~i~~~~~~~~~~~l~~  235 (432)
                      +.  ..|...+-.++........++|..+.. ..+..++..  .    +            -..-|+.|..|.|.++|..
T Consensus       250 vRflH~P~~~~gFvg~aLss~i~~~~k~~~g-~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYv  328 (461)
T PF05694_consen  250 VRFLHDPDANYGFVGCALSSSIWRFYKDDDG-EWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYV  328 (461)
T ss_dssp             EEE-SSTT--EEEEEEE--EEEEEEEE-ETT-EEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEE
T ss_pred             EEecCCCCccceEEEEeccceEEEEEEcCCC-CeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEE
Confidence            33  456666666655433333334332221 222222220  0    0            0345789999999999987


Q ss_pred             E--cCCeEEEEeCCCCCce
Q 014005          236 A--DDLRINLWNLEISDQC  252 (432)
Q Consensus       236 ~--~d~~i~lwd~~~~~~~  252 (432)
                      +  ..|.++.||+......
T Consensus       329 s~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  329 SNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             EETTTTEEEEEE-SSTTS-
T ss_pred             EcccCCcEEEEecCCCCCC
Confidence            7  7999999999854443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.29  E-value=7.1  Score=36.50  Aligned_cols=82  Identities=12%  Similarity=-0.030  Sum_probs=48.8

Q ss_pred             eeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec---CcceeEeecc--eeeeehhhhhccc------ccccccceeeEE
Q 014005          323 FTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY---EPVMTLSFCG--IYVWILRQLQHSR------FMSIYALSCVIY  390 (432)
Q Consensus       323 ~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~  390 (432)
                      +.+....+.+++.+|++++.|+.+. |+|.++|+   ..++.++.-.  ..-|+........      ........+.++
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence            4444557889999999998888766 99999999   2233332211  1123322221111      000011224567


Q ss_pred             EEeecccceeeeec
Q 014005          391 IITTLYLINLSALS  404 (432)
Q Consensus       391 ~~~g~~~~~i~~~~  404 (432)
                      ++-.-.-|.|.||.
T Consensus       383 vIyaprRg~lEvW~  396 (415)
T PF14655_consen  383 VIYAPRRGILEVWS  396 (415)
T ss_pred             EEEeccCCeEEEEe
Confidence            78888889999998

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.19  E-value=7.1  Score=36.19  Aligned_cols=17  Identities=24%  Similarity=0.272  Sum_probs=13.5

Q ss_pred             cEEEEEEcCCCCEEEEe
Q 014005           34 IVSAIEFDKTGDYLAVG   50 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~   50 (432)
                      ....|+|+++|+++++-
T Consensus        15 ~P~~ia~d~~G~l~V~e   31 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAE   31 (367)
T ss_pred             CCceeeECCCCCEEEEe
Confidence            45678999999987764

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.11  E-value=4.7  Score=33.89  Aligned_cols=143  Identities=13%  Similarity=0.082  Sum_probs=85.4

Q ss_pred             cccccccccCCCCCcceecceeec--------cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cC
Q 014005          169 AEKNFMNEHNPPSFAHGYHLEWTE--------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD  238 (432)
Q Consensus       169 ~~~~i~~~~~~~~~~~~~~~~~~~--------~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d  238 (432)
                      .+....+-..+|++++ ..|....        .+.++.|-...    +....  ...-+--+.++|+.+.+.+...  -+
T Consensus       107 kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h----~v~~i--~~~v~IsNgl~Wd~d~K~fY~iDsln  179 (310)
T KOG4499|consen  107 KKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGH----QVELI--WNCVGISNGLAWDSDAKKFYYIDSLN  179 (310)
T ss_pred             HhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCC----Cceee--ehhccCCccccccccCcEEEEEccCc
Confidence            3466677778899988 4444322        33455554321    11111  1222345678899888877766  57


Q ss_pred             CeEEEEeCCCC-Cc---eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccc
Q 014005          239 LRINLWNLEIS-DQ---CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA  314 (432)
Q Consensus       239 ~~i~lwd~~~~-~~---~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~  314 (432)
                      -.|.-||.+.. +.   .-.+++++...-..+. ..-.++.+-+| ++.++.-..++|...|..+|++    +..+.- |
T Consensus       180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~tGK~----L~eikl-P  252 (310)
T KOG4499|consen  180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESL-EPDGMTIDTEG-NLYVATFNGGTVQKVDPTTGKI----LLEIKL-P  252 (310)
T ss_pred             eEEeeeecCCCcccccCcceeEEeccCCCcCCC-CCCcceEccCC-cEEEEEecCcEEEEECCCCCcE----EEEEEc-C
Confidence            77877885422 21   1223333332111221 12345556677 8888888899999999999997    566655 1


Q ss_pred             cccCCccceeeeecceeEEEEcC
Q 014005          315 ESHGSKSFFTEIIASISDIKFAN  337 (432)
Q Consensus       315 ~~~~~~~~~~~~~~~v~~~~~s~  337 (432)
                                  ...|++++|--
T Consensus       253 ------------t~qitsccFgG  263 (310)
T KOG4499|consen  253 ------------TPQITSCCFGG  263 (310)
T ss_pred             ------------CCceEEEEecC
Confidence                        46899999974

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.10  E-value=2.8  Score=41.27  Aligned_cols=151  Identities=9%  Similarity=0.011  Sum_probs=72.3

Q ss_pred             CCCCEEEEEeCCC-----eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec-c---ce
Q 014005          125 PNGSMFILSTNDK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-N---MA  195 (432)
Q Consensus       125 ~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~---~~  195 (432)
                      -+|...++|+.||     +|..||..+.++.....+....           ...  -.-.-.+...+.|+... .   ..
T Consensus       379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r-----------~~~--gv~~~~g~iYi~GG~~~~~~~l~s  445 (571)
T KOG4441|consen  379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR-----------SGH--GVAVLGGKLYIIGGGDGSSNCLNS  445 (571)
T ss_pred             ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce-----------eee--EEEEECCEEEEEcCcCCCccccce
Confidence            3688888998885     4778888877765554332211           000  01112334444444321 2   46


Q ss_pred             EEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC-----eEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL-----RINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       196 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                      +..||...+ ....+..+ ....... .++. -++.+.+.| .|+     ++..||.+ +++-...-     .+......
T Consensus       446 ve~YDP~t~-~W~~~~~M-~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~-~~~W~~v~-----~m~~~rs~  515 (571)
T KOG4441|consen  446 VECYDPETN-TWTLIAPM-NTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPE-TNQWTMVA-----PMTSPRSA  515 (571)
T ss_pred             EEEEcCCCC-ceeecCCc-ccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCC-CCceeEcc-----cCcccccc
Confidence            777887643 22222222 1111111 1222 255566666 554     36677777 33322211     11112222


Q ss_pred             eEEEEEcCCCCcEEEEEeCCC-----eEEEEEccccc
Q 014005          270 ITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSA  301 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg-----~i~iwd~~~~~  301 (432)
                      +-.+.+  ++ .+.+.|+.||     +|..||..+.+
T Consensus       516 ~g~~~~--~~-~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  516 VGVVVL--GG-KLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             ccEEEE--CC-EEEEEecccCccccceeEEcCCCCCc
Confidence            222222  23 7888888776     46666655443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=93.08  E-value=7.7  Score=36.33  Aligned_cols=52  Identities=13%  Similarity=0.113  Sum_probs=34.7

Q ss_pred             cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005          237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  298 (432)
Q Consensus       237 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~  298 (432)
                      .||.+.+++-+  ...+..+      +.+ .--.-.+.|.+.- ..|++++.+..+.-|...
T Consensus       153 ~DG~L~~feqe--~~~f~~~------lp~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  153 MDGSLSFFEQE--SFAFSRF------LPD-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             cCceEEEEeCC--cEEEEEE------cCC-CCCCcCeEEeecC-CEEEEecCceeEEEecHH
Confidence            79999999988  3332222      011 2223356888877 788899988888888754

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.08  E-value=6.9  Score=38.68  Aligned_cols=49  Identities=12%  Similarity=0.071  Sum_probs=35.0

Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCC
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLE  247 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~  247 (432)
                      -.++|++..    ++.+... ....+.+-.+.|+.+...++...+|++++|++-
T Consensus        64 ~~I~If~~s----G~lL~~~-~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~  112 (829)
T KOG2280|consen   64 PYIRIFNIS----GQLLGRI-LWKHGELIGMGWSDDEELICVQKDGTVHVYGLL  112 (829)
T ss_pred             eeEEEEecc----ccchHHH-HhcCCCeeeecccCCceEEEEeccceEEEeecc
Confidence            357777774    4444443 233347889999988877766699999999987

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.04  E-value=0.16  Score=50.42  Aligned_cols=95  Identities=13%  Similarity=0.058  Sum_probs=58.1

Q ss_pred             cceEEEEeecccccceeeEE----eecCCCCCeeEEEeCC---CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005          193 NMATKIANVGNSVHARCQKV----YPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~----~~~~~~~~i~~~~~~~---~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (432)
                      -|.+.+|++..- .++....    ........+.-+.|.|   +.-++..+ +++.+++..++...+  ..+       .
T Consensus       152 vg~lfVy~vd~l-~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~-------r  221 (1283)
T KOG1916|consen  152 VGELFVYDVDVL-QGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLF-------R  221 (1283)
T ss_pred             hhhhheeehHhh-ccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--HHH-------H
Confidence            456678887631 2222111    1122233344455554   56677778 889998887773333  222       4


Q ss_pred             CCCcceEEE-----------EEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005          265 DLTEVITSA-----------EFHPIYCNLLAYSSSRGFVRLVDMR  298 (432)
Q Consensus       265 ~~~~~v~~~-----------~~~p~~~~~l~~~~~dg~i~iwd~~  298 (432)
                      +|..++..+           .++||| ..||.+..||.++.|.+.
T Consensus       222 sHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  222 SHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             hcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeee
Confidence            465554443           368999 999999999999999865

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.03  E-value=5.5  Score=34.45  Aligned_cols=193  Identities=10%  Similarity=0.027  Sum_probs=95.9

Q ss_pred             CcEEEEEEcCCCCEEEEecccc--eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           33 DIVSAIEFDKTGDYLAVGDRGG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      .-...+.|..+|.++-+.+.-|  .|+.+|+.+++...                         ...+...          
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~-------------------------~~~l~~~----------   89 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQ-------------------------SVPLPPR----------   89 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEE-------------------------EEE-TTT----------
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEE-------------------------EEECCcc----------
Confidence            3466788877888777766555  68999998876320                         0011000          


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                         --=-.+..  . +++.+...=.++...+||..+-+......+....           .   .++  .++..++....
T Consensus        90 ---~FgEGit~--~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EG-----------W---GLt--~dg~~Li~SDG  147 (264)
T PF05096_consen   90 ---YFGEGITI--L-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEG-----------W---GLT--SDGKRLIMSDG  147 (264)
T ss_dssp             -----EEEEEE--E-TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS----------------EEE--ECSSCEEEE-S
T ss_pred             ---ccceeEEE--E-CCEEEEEEecCCeEEEEccccceEEEEEecCCcc-----------e---EEE--cCCCEEEEECC
Confidence               01112333  1 2223333335678888888765533333332111           1   122  33333333322


Q ss_pred             eccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC------
Q 014005          191 TENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN------  262 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~------  262 (432)
                        ...+.++|...-...+.+.... ...-..++-+.+- +|...|-. ....|...|.. ++.....+++....      
T Consensus       148 --S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~-tG~V~~~iDls~L~~~~~~~  223 (264)
T PF05096_consen  148 --SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPE-TGKVVGWIDLSGLRPEVGRD  223 (264)
T ss_dssp             --SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETT-T-BEEEEEE-HHHHHHHTST
T ss_pred             --ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCC-CCeEEEEEEhhHhhhccccc
Confidence              4467777765321222222210 1112356667765 56566655 67778888888 77777777543221      


Q ss_pred             --cCCCCcceEEEEEcCCCCcEEEEE
Q 014005          263 --MDDLTEVITSAEFHPIYCNLLAYS  286 (432)
Q Consensus       263 --~~~~~~~v~~~~~~p~~~~~l~~~  286 (432)
                        ........+.|+++|....+++||
T Consensus       224 ~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  224 KSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             ccccccCCeeEeEeEeCCCCEEEEEe
Confidence              011245689999999885666655

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.93  E-value=5  Score=33.72  Aligned_cols=48  Identities=13%  Similarity=0.117  Sum_probs=36.1

Q ss_pred             EEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCC
Q 014005          223 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  278 (432)
Q Consensus       223 ~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  278 (432)
                      .+++..+|.+.++. ..++|...|.. +++.+..+       .-....|++++|--.
T Consensus       216 Gm~ID~eG~L~Va~~ng~~V~~~dp~-tGK~L~ei-------klPt~qitsccFgGk  264 (310)
T KOG4499|consen  216 GMTIDTEGNLYVATFNGGTVQKVDPT-TGKILLEI-------KLPTPQITSCCFGGK  264 (310)
T ss_pred             cceEccCCcEEEEEecCcEEEEECCC-CCcEEEEE-------EcCCCceEEEEecCC
Confidence            34556688888888 89999999999 67777766       333667999999643

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.91  E-value=1.1  Score=46.08  Aligned_cols=151  Identities=9%  Similarity=-0.056  Sum_probs=93.0

Q ss_pred             cccccccCCCCCcceecceeeccceEEEEeecccccce-----eeEEe--ecCCCCCeeEEEeCCCCCE-EEEE-cCCeE
Q 014005          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR-----CQKVY--PHAHDFNINSISNNSDCET-FVSA-DDLRI  241 (432)
Q Consensus       171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~-----~~~~~--~~~~~~~i~~~~~~~~~~~-l~~~-~d~~i  241 (432)
                      -.+..+...++....+......+..|..+|++.-....     +++.-  .........++.|+|.-.. .++. .|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            34555556677666666555445588999987431111     11110  0122335567888887443 3444 89999


Q ss_pred             EEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcc
Q 014005          242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS  321 (432)
Q Consensus       242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~  321 (432)
                      ++..+.........        .......++++|+|.| +.++.|-..|++.-|... .+.    .+.+.+ +.  ... 
T Consensus       181 ~V~~~~~~~~~v~s--------~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~-lei----k~~ip~-Pp--~~e-  242 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTS--------FPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPS-LEI----KSEIPE-PP--VEE-  242 (1405)
T ss_pred             hhhhhhhhhhhhcc--------cCcccceeeEEecccc-ceeeEecCCCeEEEeecc-cce----eecccC-CC--cCC-
Confidence            88877633332221        2345678999999999 999999999999988765 232    233322 11  110 


Q ss_pred             ceeeeecceeEEEEcCCCCEEEE
Q 014005          322 FFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       322 ~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                           ...|.+++|-..-.+|+.
T Consensus       243 -----~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  243 -----NYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             -----CcceeEEEEecceeEEEE
Confidence                 367999999988888876

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.88  E-value=7.3  Score=35.48  Aligned_cols=71  Identities=15%  Similarity=0.121  Sum_probs=39.3

Q ss_pred             cceEEEEEcCCC------CcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005          268 EVITSAEFHPIY------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (432)
Q Consensus       268 ~~v~~~~~~p~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~  341 (432)
                      ..+..+.|....      ..+|++.-..+.|....+..+.........+..             ....+.++++.|||.+
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------------~~~r~~~v~~~pDG~L  319 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGG-------------FGGRPRDVAQGPDGAL  319 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTT-------------SSS-EEEEEEETTSEE
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcccc-------------CCCCceEEEEcCCCeE
Confidence            557777776432      145665555667877777644321111122222             1347899999999988


Q ss_pred             EEEee-CCeEE
Q 014005          342 LLSRD-YMNLK  351 (432)
Q Consensus       342 l~s~~-~~~i~  351 (432)
                      .++-+ +|.|+
T Consensus       320 yv~~d~~G~iy  330 (331)
T PF07995_consen  320 YVSDDSDGKIY  330 (331)
T ss_dssp             EEEE-TTTTEE
T ss_pred             EEEECCCCeEe
Confidence            77754 46653

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=92.76  E-value=8.8  Score=37.90  Aligned_cols=156  Identities=8%  Similarity=-0.032  Sum_probs=76.4

Q ss_pred             eeEEEEEEcCCCCEEEEEeCC------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          116 INRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       116 v~~l~~~~s~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                      -.+++.   -++...++|+.|      .++..||...+++.....++...             ...-.-.-.+...+.|+
T Consensus       325 ~~~~~~---~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R-------------~~~~v~~l~g~iYavGG  388 (571)
T KOG4441|consen  325 RVGVAV---LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR-------------SDFGVAVLDGKLYAVGG  388 (571)
T ss_pred             cccEEE---ECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc-------------ccceeEEECCEEEEEec
Confidence            344555   356788888888      46778888888766654443222             00001112334444455


Q ss_pred             eec---cceEEEEeecccccceeeEEeecCCCCCeeEEE-eCCCCCEEEEE-cCC------eEEEEeCCCCCceeeEeec
Q 014005          190 WTE---NMATKIANVGNSVHARCQKVYPHAHDFNINSIS-NNSDCETFVSA-DDL------RINLWNLEISDQCFNIVDM  258 (432)
Q Consensus       190 ~~~---~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~-~d~------~i~lwd~~~~~~~~~~~~~  258 (432)
                      ...   -..+..||.... ....+..+    ........ ..-+|...++| .++      ++..||.. ++.-...-  
T Consensus       389 ~dg~~~l~svE~YDp~~~-~W~~va~m----~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~-t~~W~~~~--  460 (571)
T KOG4441|consen  389 FDGEKSLNSVECYDPVTN-KWTPVAPM----LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPE-TNTWTLIA--  460 (571)
T ss_pred             cccccccccEEEecCCCC-cccccCCC----CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCC-CCceeecC--
Confidence            421   125777777643 22222211    11111221 12256666666 443      46677777 33322211  


Q ss_pred             CCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC-----eEEEEEccccc
Q 014005          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSA  301 (432)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----~i~iwd~~~~~  301 (432)
                         .+..-..... ++.- ++ .+.+.||.|+     +|..||.++.+
T Consensus       461 ---~M~~~R~~~g-~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  461 ---PMNTRRSGFG-VAVL-NG-KIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             ---Ccccccccce-EEEE-CC-EEEEECCccCCCccceEEEEcCCCCc
Confidence               1111111111 2222 34 7888888776     37778887655

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.72  E-value=2.3  Score=39.60  Aligned_cols=80  Identities=16%  Similarity=0.143  Sum_probs=52.8

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc----ceEEEEEcC------------
Q 014005          215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE----VITSAEFHP------------  277 (432)
Q Consensus       215 ~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~p------------  277 (432)
                      ......+.+++.+|++++.|+. .=|.|.++|+. .+..++.+       ++..+    ++....-..            
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~-~~~vvrmW-------KGYRdAqc~wi~~~~~~~~~~~~~~~~~~~  375 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVA-RGIVVRMW-------KGYRDAQCGWIEVPEEGDRDRSNSNSPKSS  375 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECC-CChhhhhh-------ccCccceEEEEEeecccccccccccccCCC
Confidence            4455678899999999988888 78999999998 66666655       33221    111111100            


Q ss_pred             -CCC-cEEEEEeCCCeEEEEEcccccc
Q 014005          278 -IYC-NLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       278 -~~~-~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                       ... -+++.+-..|.|.||+++.|..
T Consensus       376 ~~~~l~LvIyaprRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  376 SRFALFLVIYAPRRGILEVWSMRQGPR  402 (415)
T ss_pred             CcceEEEEEEeccCCeEEEEecCCCCE
Confidence             000 2445567899999999998765

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.98  E-value=5.1  Score=36.47  Aligned_cols=57  Identities=21%  Similarity=0.230  Sum_probs=36.2

Q ss_pred             CeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCC
Q 014005          220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI  278 (432)
Q Consensus       220 ~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  278 (432)
                      ..++|+|.|+|+.+++-..|.|++++.+ .........+ +............++++|+
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~-~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADL-PEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE--TTTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceeccc-ccccccccCCcccceeccc
Confidence            4678999999988776699999999944 2221121111 1222344557899999995

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=91.93  E-value=7.9  Score=33.67  Aligned_cols=155  Identities=10%  Similarity=0.076  Sum_probs=89.9

Q ss_pred             cEEEEEEcCCCCEEEEec---ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           34 IVSAIEFDKTGDYLAVGD---RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      .+.+.+.+++|+.+|...   ....+.++.......                            ..+.+           
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~----------------------------~~~~g-----------   65 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR----------------------------PVLTG-----------   65 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce----------------------------eeccC-----------
Confidence            688999999999876655   233455554433211                            01111           


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEE-ccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK-VRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                         ..+..-+|  ++++...+....+...+++. ...+....... ....         ..+.|..+.++|++..++...
T Consensus        66 ---~~l~~PS~--d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v-~~~~---------~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen   66 ---GSLTRPSW--DPDGWVWTVDDGSGGVRVVRDSASGTGEPVEV-DWPG---------LRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             ---Cccccccc--cCCCCEEEEEcCCCceEEEEecCCCcceeEEe-cccc---------cCCceEEEEECCCCcEEEEEE
Confidence               45677788  78887777766666666664 23333222111 1100         012789999999999887766


Q ss_pred             eec-cceEEEEeecccccc------eeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEE
Q 014005          190 WTE-NMATKIANVGNSVHA------RCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINL  243 (432)
Q Consensus       190 ~~~-~~~v~i~d~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~l  243 (432)
                      ... ++.+.+--+.....+      ...... ......+.+++|.+++.+++.+  .++.+..
T Consensus       131 ~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~-~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  131 EDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA-PPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR  192 (253)
T ss_pred             ecCCCCeEEEEEEEeCCCCCcceeccceEec-ccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence            432 456666654432223      112222 2335688999999999887776  3443433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=91.81  E-value=13  Score=35.99  Aligned_cols=23  Identities=9%  Similarity=0.083  Sum_probs=17.3

Q ss_pred             EEEEE-cCCeEEEEeCCCCCceeeE
Q 014005          232 TFVSA-DDLRINLWNLEISDQCFNI  255 (432)
Q Consensus       232 ~l~~~-~d~~i~lwd~~~~~~~~~~  255 (432)
                      .++.+ .+|.+...|.+ +++.+..
T Consensus       303 ~V~~g~~~G~l~ald~~-tG~~~W~  326 (488)
T cd00216         303 AIVHAPKNGFFYVLDRT-TGKLISA  326 (488)
T ss_pred             EEEEECCCceEEEEECC-CCcEeeE
Confidence            46667 89999999999 6665543

The alignment model contains an 8-bladed beta-propeller.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.54  E-value=7.4  Score=36.70  Aligned_cols=133  Identities=14%  Similarity=0.144  Sum_probs=79.3

Q ss_pred             eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-------EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-------TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      .+.-.|++   .++.+..+ .-|..-  -+.+.|+..       .-++| ++..|.-.|.+..+..+...+.+.  .. .
T Consensus       491 kLykmDIE---rGkvveeW-~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKd--Y~-t  561 (776)
T COG5167         491 KLYKMDIE---RGKVVEEW-DLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKD--YK-T  561 (776)
T ss_pred             cceeeecc---cceeeeEe-ecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehh--cc-c
Confidence            44444555   56666666 444433  567777532       34456 777777778775554443321111  01 1


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~  346 (432)
                      .....+..-...  -++|.|+..|-|++||-- |...   ...+.+             ....|..+..+.+|+++++-.
T Consensus       562 Kn~Fss~~tTes--GyIa~as~kGDirLyDRi-g~rA---KtalP~-------------lG~aIk~idvta~Gk~ilaTC  622 (776)
T COG5167         562 KNKFSSGMTTES--GYIAAASRKGDIRLYDRI-GKRA---KTALPG-------------LGDAIKHIDVTANGKHILATC  622 (776)
T ss_pred             cccccccccccC--ceEEEecCCCceeeehhh-cchh---hhcCcc-------------cccceeeeEeecCCcEEEEee
Confidence            122333333333  589999999999999943 4432   122222             256899999999999887654


Q ss_pred             CCeEEEEec
Q 014005          347 YMNLKVFRY  355 (432)
Q Consensus       347 ~~~i~iwd~  355 (432)
                      ...+.+-|+
T Consensus       623 k~yllL~d~  631 (776)
T COG5167         623 KNYLLLTDV  631 (776)
T ss_pred             cceEEEEec
Confidence            578888888

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.33  E-value=7.4  Score=36.14  Aligned_cols=74  Identities=11%  Similarity=0.076  Sum_probs=49.6

Q ss_pred             CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~  346 (432)
                      .++|.++.|++|+ +.+|+--.++.|.+++....+........-+..             ...|.+..|+.+ +-+|.-.
T Consensus        66 ~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k-------------~~~IlGF~W~~s-~e~A~i~  130 (657)
T KOG2377|consen   66 KGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK-------------NANILGFCWTSS-TEIAFIT  130 (657)
T ss_pred             CCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHhccC-------------cceeEEEEEecC-eeEEEEe
Confidence            4589999999999 999999999999999974322110001111110             346888999876 5555554


Q ss_pred             CCeEEEEec
Q 014005          347 YMNLKVFRY  355 (432)
Q Consensus       347 ~~~i~iwd~  355 (432)
                      +.-+.+|.+
T Consensus       131 ~~G~e~y~v  139 (657)
T KOG2377|consen  131 DQGIEFYQV  139 (657)
T ss_pred             cCCeEEEEE
Confidence            555677776

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=91.21  E-value=9.9  Score=33.42  Aligned_cols=119  Identities=9%  Similarity=0.037  Sum_probs=67.1

Q ss_pred             CeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeec-CCC-----CcCCCCcceEEEE--EcCCCCcEEEEEeCCCe
Q 014005          220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDM-KPS-----NMDDLTEVITSAE--FHPIYCNLLAYSSSRGF  291 (432)
Q Consensus       220 ~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~-~~~-----~~~~~~~~v~~~~--~~p~~~~~l~~~~~dg~  291 (432)
                      .|..+...++-+.+++-.|+.++++++..-......-.. .+.     ........+...+  -.+.+...|+++ ...+
T Consensus        37 ~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~  115 (275)
T PF00780_consen   37 SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKK  115 (275)
T ss_pred             eEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECCE
Confidence            388888888877777667799999998722111100000 000     0011222344444  122332445544 4558


Q ss_pred             EEEEEcccccccc-ccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          292 VRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       292 i~iwd~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                      |.+|......... +..+.+.-              ...+..++|.  +..|+.|..+...+.|+
T Consensus       116 i~i~~~~~~~~~f~~~~ke~~l--------------p~~~~~i~~~--~~~i~v~~~~~f~~idl  164 (275)
T PF00780_consen  116 ILIYEWNDPRNSFSKLLKEISL--------------PDPPSSIAFL--GNKICVGTSKGFYLIDL  164 (275)
T ss_pred             EEEEEEECCcccccceeEEEEc--------------CCCcEEEEEe--CCEEEEEeCCceEEEec
Confidence            9999887642211 22445544              4678889998  55777775667888888

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.12  E-value=1.5  Score=37.04  Aligned_cols=74  Identities=9%  Similarity=0.109  Sum_probs=50.0

Q ss_pred             EcCCCCcEEEEEeCCCeEEEEEccccccccccce---eecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEE
Q 014005          275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK  351 (432)
Q Consensus       275 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~  351 (432)
                      +..++ ++|++-+.+|.+++||+.+++.......   .+..  . +....   .....|..+.++.+|.-|++-++|..+
T Consensus        18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~--~-~~~~~---~~~~~i~~~~lt~~G~PiV~lsng~~y   90 (219)
T PF07569_consen   18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNS--S-PVSDK---SSSPNITSCSLTSNGVPIVTLSNGDSY   90 (219)
T ss_pred             EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcc--c-ccccC---CCCCcEEEEEEcCCCCEEEEEeCCCEE
Confidence            44456 7899999999999999998775321100   0110  0 00000   125688999999999988887778899


Q ss_pred             EEec
Q 014005          352 VFRY  355 (432)
Q Consensus       352 iwd~  355 (432)
                      .|+.
T Consensus        91 ~y~~   94 (219)
T PF07569_consen   91 SYSP   94 (219)
T ss_pred             Eecc
Confidence            9998

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.92  E-value=13  Score=35.33  Aligned_cols=62  Identities=13%  Similarity=0.058  Sum_probs=39.2

Q ss_pred             CCCCeeEEEeCCCCCEEEEEc-CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCC
Q 014005          217 HDFNINSISNNSDCETFVSAD-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY  279 (432)
Q Consensus       217 ~~~~i~~~~~~~~~~~l~~~~-d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  279 (432)
                      .-...+.|+|.|++++|++-. .|.|++++.. .........+..............|+++|+-
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~-~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPE-TGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCC-CCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            345778999999998888775 7999999865 2222112111111011125668999999873

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=90.83  E-value=22  Score=36.65  Aligned_cols=70  Identities=9%  Similarity=0.200  Sum_probs=43.3

Q ss_pred             ceEEEEEcCCCCcEEEEEe----------CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005          269 VITSAEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d  338 (432)
                      .|.++.|..|.+.++++|.          ..|+|.+|.+..++.    ++....|           ...+.+.++.- -+
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~----L~~v~e~-----------~v~Gav~aL~~-fn  839 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS----LELVAET-----------VVKGAVYALVE-FN  839 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc----eeeeeee-----------eeccceeehhh-hC
Confidence            4666678887437777776          347888888876222    2333332           11345555442 25


Q ss_pred             CCEEEEeeCCeEEEEec
Q 014005          339 GQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       339 g~~l~s~~~~~i~iwd~  355 (432)
                      |++||+=+ ..|++|++
T Consensus       840 gkllA~In-~~vrLye~  855 (1096)
T KOG1897|consen  840 GKLLAGIN-QSVRLYEW  855 (1096)
T ss_pred             CeEEEecC-cEEEEEEc
Confidence            78887644 58999999

>PRK13684 Ycf48-like protein; Provisional

Probab=90.59  E-value=13  Score=33.84  Aligned_cols=157  Identities=9%  Similarity=-0.046  Sum_probs=85.4

Q ss_pred             cccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCC
Q 014005          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD  250 (432)
Q Consensus       171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~  250 (432)
                      +.+..+.+.+++.+++.+..   |.+..- .+.  .++.-..........++++.+.++++.+++|..|.+.+=..+ .+
T Consensus       173 g~~~~i~~~~~g~~v~~g~~---G~i~~s-~~~--gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d-~G  245 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVSSR---GNFYST-WEP--GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPD-DL  245 (334)
T ss_pred             ceEEEEEECCCCeEEEEeCC---ceEEEE-cCC--CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCC-CC
Confidence            45666777777766655442   322211 110  111111111344567899999999998888877776532233 33


Q ss_pred             ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecce
Q 014005          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (432)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v  330 (432)
                      ........ +.  ......+..+.+.|++ ..++ ++.+|.+. .....++.    .+....+.          ......
T Consensus       246 ~sW~~~~~-~~--~~~~~~l~~v~~~~~~-~~~~-~G~~G~v~-~S~d~G~t----W~~~~~~~----------~~~~~~  305 (334)
T PRK13684        246 ESWSKPII-PE--ITNGYGYLDLAYRTPG-EIWA-GGGNGTLL-VSKDGGKT----WEKDPVGE----------EVPSNF  305 (334)
T ss_pred             CccccccC-Cc--cccccceeeEEEcCCC-CEEE-EcCCCeEE-EeCCCCCC----CeECCcCC----------CCCcce
Confidence            33332100 00  1122357889999987 6555 55577554 33343332    12221100          002357


Q ss_pred             eEEEEcCCCCEEEEeeCCeEEEEe
Q 014005          331 SDIKFANDGQHLLSRDYMNLKVFR  354 (432)
Q Consensus       331 ~~~~~s~dg~~l~s~~~~~i~iwd  354 (432)
                      ..+.|..+++.+++|..|.|.-|+
T Consensus       306 ~~~~~~~~~~~~~~G~~G~il~~~  329 (334)
T PRK13684        306 YKIVFLDPEKGFVLGQRGVLLRYV  329 (334)
T ss_pred             EEEEEeCCCceEEECCCceEEEec
Confidence            788888888999999888887765

>PHA03098 kelch-like protein; Provisional

Probab=90.57  E-value=13  Score=36.44  Aligned_cols=28  Identities=18%  Similarity=0.423  Sum_probs=19.0

Q ss_pred             CCCEEEEEeCC-----CeEEEEEccCcceeeee
Q 014005          126 NGSMFILSTND-----KTIKLWKVRDQKVKKIK  153 (432)
Q Consensus       126 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~  153 (432)
                      ++..++.|+.+     ..+..||..++++....
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  374 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEP  374 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence            56677777765     35778888877765543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.22  E-value=11  Score=39.31  Aligned_cols=152  Identities=5%  Similarity=0.043  Sum_probs=79.0

Q ss_pred             ceeEEEEEEcCCCCEEEE--EeCCCeEEEEEccCcceee---eeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          115 KINRVRWCAAPNGSMFIL--STNDKTIKLWKVRDQKVKK---IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s--~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                      .+..+..  .+|+...++  .+.+-.|..||++.-....   ..-+..+.     .......-..++.|+|.-.......
T Consensus       102 pi~~~v~--~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~-----ts~ek~vf~~~~~wnP~vp~n~av~  174 (1405)
T KOG3630|consen  102 PIVIFVC--FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSA-----TSFEKPVFQLKNVWNPLVPLNSAVD  174 (1405)
T ss_pred             cceEEEe--ccCCceEEEEEecCCceEEEEehHhhhhhhhhhcccccccc-----chhccccccccccccCCccchhhhh
Confidence            3444444  566554433  3445588999997532111   00000000     0111123445666766543222211


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      . .|+.|++..+...  ......+  .-....++++|+|.|..++.| .+|++.-|...  .+....+. .|...+  ..
T Consensus       175 l-~dlsl~V~~~~~~--~~~v~s~--p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip-~Pp~~e--~y  244 (1405)
T KOG3630|consen  175 L-SDLSLRVKSTKQL--AQNVTSF--PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIP-EPPVEE--NY  244 (1405)
T ss_pred             c-cccchhhhhhhhh--hhhhccc--CcccceeeEEeccccceeeEecCCCeEEEeecc--cceeeccc-CCCcCC--Cc
Confidence            1 1566666554421  1111211  334578899999999999999 99999888766  33333221 111112  56


Q ss_pred             ceEEEEEcCCCCcEEE
Q 014005          269 VITSAEFHPIYCNLLA  284 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~  284 (432)
                      .|.+++|-... .+++
T Consensus       245 rvl~v~Wl~t~-eflv  259 (1405)
T KOG3630|consen  245 RVLSVTWLSTQ-EFLV  259 (1405)
T ss_pred             ceeEEEEecce-eEEE
Confidence            79999997665 4444

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.76  E-value=7.6  Score=38.76  Aligned_cols=121  Identities=18%  Similarity=0.164  Sum_probs=70.9

Q ss_pred             CeeEEEeCC--CCCEEEEE-cCCeEEEEeCCC-------C----CceeeEeecCCCCcCCCCcceEEEEEc--CCCCcEE
Q 014005          220 NINSISNNS--DCETFVSA-DDLRINLWNLEI-------S----DQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLL  283 (432)
Q Consensus       220 ~i~~~~~~~--~~~~l~~~-~d~~i~lwd~~~-------~----~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l  283 (432)
                      .|+.|.+..  +...|+.+ +||.|.+|.++.       .    ........++|.-........++++++  ... +++
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEE
Confidence            455555443  45567777 999999997630       0    000001122333223345578999998  776 899


Q ss_pred             EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC-----C-EEEEeeC-CeEEEEec
Q 014005          284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-----Q-HLLSRDY-MNLKVFRY  355 (432)
Q Consensus       284 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg-----~-~l~s~~~-~~i~iwd~  355 (432)
                      |+++....|.||-...............              +...|.+++|-++.     . +|++++= |.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~--------------~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQ--------------HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccc--------------cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            9999888888887654211000001111              24678889988753     2 4544433 88888877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.52  E-value=2.8  Score=35.48  Aligned_cols=85  Identities=13%  Similarity=0.120  Sum_probs=52.5

Q ss_pred             EcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEE
Q 014005           40 FDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV  119 (432)
Q Consensus        40 fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l  119 (432)
                      +..++++|++-+.+|.+++||+.+++...........+..          .. ....  ...            ..|..+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~----------~~-~~~~--~~~------------~~i~~~   72 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNS----------SP-VSDK--SSS------------PNITSC   72 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcc----------cc-cccC--CCC------------CcEEEE
Confidence            4467899999999999999999998754110000000000          00 0000  122            678888


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEccCcceeee
Q 014005          120 RWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI  152 (432)
Q Consensus       120 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  152 (432)
                      ..  +.+|.-+++-+ +|....|+..-+.+..+
T Consensus        73 ~l--t~~G~PiV~ls-ng~~y~y~~~L~~W~~v  102 (219)
T PF07569_consen   73 SL--TSNGVPIVTLS-NGDSYSYSPDLGCWIRV  102 (219)
T ss_pred             EE--cCCCCEEEEEe-CCCEEEeccccceeEEe
Confidence            88  78887776655 57889999876665544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.19  E-value=17  Score=33.02  Aligned_cols=125  Identities=17%  Similarity=0.158  Sum_probs=70.8

Q ss_pred             CeeEEEeCCCCCEEEEE-cC------CeEEEEeCCCCCceeeEeecCCC--------CcCCCCcceEEEEEcCCCCcEEE
Q 014005          220 NINSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPS--------NMDDLTEVITSAEFHPIYCNLLA  284 (432)
Q Consensus       220 ~i~~~~~~~~~~~l~~~-~d------~~i~lwd~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~p~~~~~l~  284 (432)
                      ..-+|++.+++.++++. .+      ..|..++.+  +.....+.+...        .-...+...-+++++|+| +.|.
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~  162 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLF  162 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCC-CEEE
Confidence            44567777788888887 67      778888876  555554433221        112345578999999999 7555


Q ss_pred             EEeC-----CC--e-------EEEE--Eccc-cccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-ee
Q 014005          285 YSSS-----RG--F-------VRLV--DMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD  346 (432)
Q Consensus       285 ~~~~-----dg--~-------i~iw--d~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~  346 (432)
                      ++..     |+  .       ++++  |..+ ++.    ...+.- +.++.....   ....++.+.+-+++++|+. .+
T Consensus       163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~----~~~~~y-~ld~~~~~~---~~~~isd~~al~d~~lLvLER~  234 (326)
T PF13449_consen  163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEP----VAEYAY-PLDPPPTAP---GDNGISDIAALPDGRLLVLERD  234 (326)
T ss_pred             EEECccccCCCcccccccCceEEEEEecCCCCCcc----ceEEEE-eCCcccccc---CCCCceeEEEECCCcEEEEEcc
Confidence            5442     22  1       4444  4433 211    122221 111000000   1468899999999998886 12


Q ss_pred             -----CCeEEEEec
Q 014005          347 -----YMNLKVFRY  355 (432)
Q Consensus       347 -----~~~i~iwd~  355 (432)
                           ...++|+.+
T Consensus       235 ~~~~~~~~~ri~~v  248 (326)
T PF13449_consen  235 FSPGTGNYKRIYRV  248 (326)
T ss_pred             CCCCccceEEEEEE
Confidence                 256666666

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.00  E-value=4  Score=42.88  Aligned_cols=80  Identities=18%  Similarity=0.246  Sum_probs=54.0

Q ss_pred             CCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCC---C---ceeeEeecC--------C--CCcC-CCCcceEEEEEcCCC
Q 014005          217 HDFNINSISNNSDCETFVSADDLRINLWNLEIS---D---QCFNIVDMK--------P--SNMD-DLTEVITSAEFHPIY  279 (432)
Q Consensus       217 ~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~---~---~~~~~~~~~--------~--~~~~-~~~~~v~~~~~~p~~  279 (432)
                      ....|+++....+|+.+.+|.||.  +|.+-..   +   +..+.+.+.        |  .++. .+..+|..+..+..-
T Consensus       177 dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             CCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            355788999889999999996664  4444210   0   100111000        0  1223 566789999999886


Q ss_pred             CcEEEEEeCCCeEEEEEccc
Q 014005          280 CNLLAYSSSRGFVRLVDMRQ  299 (432)
Q Consensus       280 ~~~l~~~~~dg~i~iwd~~~  299 (432)
                       +++.+-+..|+|.+||+..
T Consensus       255 -~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  255 -NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             -ceeeeeccCceEEEEEccC
Confidence             8999999999999999986

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=88.88  E-value=17  Score=32.52  Aligned_cols=157  Identities=11%  Similarity=-0.012  Sum_probs=80.1

Q ss_pred             cccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCC
Q 014005          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD  250 (432)
Q Consensus       171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~  250 (432)
                      +.+..+..++++.+++.+..  .....-|+.... ...+..   .....+|.++.|.|++...+.+..|.|+.=+..   
T Consensus       145 gs~~~~~r~~dG~~vavs~~--G~~~~s~~~G~~-~w~~~~---r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~---  215 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSR--GNFYSSWDPGQT-TWQPHN---RNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDP---  215 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETT--SSEEEEE-TT-S-S-EEEE-----SSS-EEEEEE-TTS-EEEEETTTEEEEEE-T---
T ss_pred             ceeEeEEECCCCcEEEEECc--ccEEEEecCCCc-cceEEc---cCccceehhceecCCCCEEEEeCCcEEEEccCC---
Confidence            56777778899998888765  445555654321 112211   345678999999999887777789998887722   


Q ss_pred             ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecce
Q 014005          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (432)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v  330 (432)
                      .....+...........-.+..++|.+++ .+.|+|+.. .+ +.....|+-    -+.... . .+        .....
T Consensus       216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg~G-~l-~~S~DgGkt----W~~~~~-~-~~--------~~~n~  278 (302)
T PF14870_consen  216 DDGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVGGSG-TL-LVSTDGGKT----WQKDRV-G-EN--------VPSNL  278 (302)
T ss_dssp             TEEEEE---B-TTSS--S-EEEEEESSSS--EEEEESTT--E-EEESSTTSS-----EE-GG-G-TT--------SSS--
T ss_pred             CCccccccccCCcccCceeeEEEEecCCC-CEEEEeCCc-cE-EEeCCCCcc----ceECcc-c-cC--------CCCce
Confidence            11222211001111223348899999987 777766644 33 333344443    122211 0 00        12467


Q ss_pred             eEEEEcCCCCEEEEeeCCeEEEE
Q 014005          331 SDIKFANDGQHLLSRDYMNLKVF  353 (432)
Q Consensus       331 ~~~~~s~dg~~l~s~~~~~i~iw  353 (432)
                      ..+.|.++.+-++.|.+|.|-=|
T Consensus       279 ~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  279 YRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             -EEEEEETTEEEEE-STTEEEEE
T ss_pred             EEEEEcCCCceEEECCCcEEEEe
Confidence            88999888888999988877544

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=88.74  E-value=4.1  Score=33.03  Aligned_cols=31  Identities=29%  Similarity=0.241  Sum_probs=26.3

Q ss_pred             ceEEEEEcCCC-----CcEEEEEeCCCeEEEEEccc
Q 014005          269 VITSAEFHPIY-----CNLLAYSSSRGFVRLVDMRQ  299 (432)
Q Consensus       269 ~v~~~~~~p~~-----~~~l~~~~~dg~i~iwd~~~  299 (432)
                      .+..++|||.|     ..+||+.+.++.+.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            78999999965     25899999999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=88.57  E-value=17  Score=36.15  Aligned_cols=35  Identities=20%  Similarity=0.452  Sum_probs=29.8

Q ss_pred             CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCc
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK   65 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~   65 (432)
                      ....++++.-+|.|+-++.+..||+|++|+.....
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~   47 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR   47 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence            34568889999999999999999999999986543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.54  E-value=11  Score=35.11  Aligned_cols=106  Identities=10%  Similarity=0.125  Sum_probs=69.0

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEE
Q 014005          215 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  293 (432)
Q Consensus       215 ~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~  293 (432)
                      ....+.|.++.|++|.+.+|+- .+++|.+++.. +++.......   +.+..+..|....|+.+  .-+|.-...| +.
T Consensus        63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~-~d~~~l~~~~---~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~e  135 (657)
T KOG2377|consen   63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFI-PDNSQLEYTQ---ECKTKNANILGFCWTSS--TEIAFITDQG-IE  135 (657)
T ss_pred             ecCCCceeEEEeccCcceEEEEecCceEEEEecC-CCchhhHHHH---HhccCcceeEEEEEecC--eeEEEEecCC-eE
Confidence            3456799999999999999999 99999999986 3433322211   11333456889999865  3455555443 66


Q ss_pred             EEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (432)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  343 (432)
                      +|.....+..   ++..+.|             ...|.--.|.++-+.+.
T Consensus       136 ~y~v~pekrs---lRlVks~-------------~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  136 FYQVLPEKRS---LRLVKSH-------------NLNVNWYMYCPETAVIL  169 (657)
T ss_pred             EEEEchhhhh---hhhhhhc-------------ccCccEEEEccccceEe
Confidence            7765543322   3555554             56677778888776544

>PRK10115 protease 2; Provisional

Probab=87.67  E-value=35  Score=34.76  Aligned_cols=197  Identities=8%  Similarity=0.033  Sum_probs=96.8

Q ss_pred             cEEEEEEcCCCCEEEEec-----ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           34 IVSAIEFDKTGDYLAVGD-----RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      .+..+.++|+|++|+.+.     ....|++.|+.+++.+.                          ..+.          
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~--------------------------~~i~----------  171 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP--------------------------ELLD----------  171 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC--------------------------cccc----------
Confidence            467788999999887643     23368888887765220                          0110          


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCC------CeEEEEEccCc--ceeeeeecCCCCccccccccccccccccccCCC
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTND------KTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  180 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d------~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  180 (432)
                           ..-..++|  .+|++.|+.+..+      ..|..+++.++  +-..+.......            .......+.
T Consensus       172 -----~~~~~~~w--~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~------------~~~~~~~s~  232 (686)
T PRK10115        172 -----NVEPSFVW--ANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDT------------FYVSLHKTT  232 (686)
T ss_pred             -----CcceEEEE--eeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCC------------EEEEEEEcC
Confidence                 11145899  7788776665432      36777888777  322332211111            111223344


Q ss_pred             CCcceecceeec-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-CC--eEEEEeCCCCCceeeE
Q 014005          181 SFAHGYHLEWTE-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DL--RINLWNLEISDQCFNI  255 (432)
Q Consensus       181 ~~~~~~~~~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~--~i~lwd~~~~~~~~~~  255 (432)
                      ++.+++...... ++.+.+++.... .......+ ....+....+. +..+.+++.. . ..  .|...++...+ ..+.
T Consensus       233 d~~~l~i~~~~~~~~~~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~-~~~~  308 (686)
T PRK10115        233 SKHYVVIHLASATTSEVLLLDAELA-DAEPFVFL-PRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQ-QWEE  308 (686)
T ss_pred             CCCEEEEEEECCccccEEEEECcCC-CCCceEEE-ECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcc-cCeE
Confidence            666665443322 567888885421 12222222 11122222222 2233333333 2 22  33333443111 1122


Q ss_pred             eecCCCCcCCC--CcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005          256 VDMKPSNMDDL--TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR  298 (432)
Q Consensus       256 ~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~  298 (432)
                      +       -.+  ...+..+.+..+  .++++...+|.-+++-+.
T Consensus       309 l-------~~~~~~~~i~~~~~~~~--~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        309 L-------IPPRENIMLEGFTLFTD--WLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             E-------ECCCCCCEEEEEEEECC--EEEEEEEeCCEEEEEEEc
Confidence            2       222  236778888733  677777777765555443

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.07  E-value=12  Score=35.58  Aligned_cols=83  Identities=10%  Similarity=0.137  Sum_probs=46.6

Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccc------ccccCCccceeee-ecceeEEEEcCCC-
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA------AESHGSKSFFTEI-IASISDIKFANDG-  339 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h------~~~~~~~~~~~~~-~~~v~~~~~s~dg-  339 (432)
                      -.|..+..++.| ..++-+|.+|.+.++=.+....    -..++.-      ..-+....+|... .-.+..++|+|+. 
T Consensus       104 feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~----~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~  178 (741)
T KOG4460|consen  104 FEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGK----NSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSI  178 (741)
T ss_pred             EEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCc----cceecCCCceEEEEeecccceeeccCCceeeeeccccCCcc
Confidence            357788899999 8888899999766553221110    0111100      0000011111111 1246678999975 


Q ss_pred             ---CEEEEeeCCeEEEEec
Q 014005          340 ---QHLLSRDYMNLKVFRY  355 (432)
Q Consensus       340 ---~~l~s~~~~~i~iwd~  355 (432)
                         .+++-.+|+.+|+||+
T Consensus       179 ~D~hL~iL~sdnviRiy~l  197 (741)
T KOG4460|consen  179 LDPHLVLLTSDNVIRIYSL  197 (741)
T ss_pred             CCceEEEEecCcEEEEEec
Confidence               3444567799999999

>PHA02790 Kelch-like protein; Provisional

Probab=86.94  E-value=31  Score=33.39  Aligned_cols=30  Identities=10%  Similarity=0.333  Sum_probs=19.5

Q ss_pred             CCCEEEEEeCC--CeEEEEEccCcceeeeeec
Q 014005          126 NGSMFILSTND--KTIKLWKVRDQKVKKIKEM  155 (432)
Q Consensus       126 ~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~  155 (432)
                      ++...+.|+.+  ..+..||..++++.....+
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            67777777753  4578888877665554433

>PHA02713 hypothetical protein; Provisional

Probab=86.62  E-value=7.6  Score=38.31  Aligned_cols=94  Identities=4%  Similarity=-0.117  Sum_probs=44.6

Q ss_pred             eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec----cceEEEEeecccccceeeEEe
Q 014005          138 TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE----NMATKIANVGNSVHARCQKVY  213 (432)
Q Consensus       138 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~v~i~d~~~~~~~~~~~~~  213 (432)
                      .+..||..+.++..+..+....             .......-++...+.|+...    ...+..||.+.......+..+
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r-------------~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m  499 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGT-------------IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT  499 (557)
T ss_pred             eEEEECCCCCeEeecCCCCccc-------------ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc
Confidence            5778888887766554432211             11111112233333333311    124567887741133333333


Q ss_pred             ecCCCCCeeEEEeCCCCCEEEEE-cCC--eEEEEeCC
Q 014005          214 PHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLE  247 (432)
Q Consensus       214 ~~~~~~~i~~~~~~~~~~~l~~~-~d~--~i~lwd~~  247 (432)
                       .........+.+  ++.+.++| .++  .+..||..
T Consensus       500 -~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~  533 (557)
T PHA02713        500 -ESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVY  533 (557)
T ss_pred             -CcccccceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence             222222223333  66777777 666  66777776

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=86.57  E-value=8.9  Score=26.99  Aligned_cols=44  Identities=11%  Similarity=0.126  Sum_probs=28.6

Q ss_pred             EeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005          286 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (432)
Q Consensus       286 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~  347 (432)
                      +..+|++.-||..+++.    ...+.+              -.-.+.+++++|+.+|+.+..
T Consensus        33 ~~~~GRll~ydp~t~~~----~vl~~~--------------L~fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKET----TVLLDG--------------LYFPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             T---EEEEEEETTTTEE----EEEEEE--------------ESSEEEEEE-TTSSEEEEEEG
T ss_pred             CCCCcCEEEEECCCCeE----EEehhC--------------CCccCeEEEcCCCCEEEEEec
Confidence            34567888899888764    223333              456789999999998887643

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.16  E-value=19  Score=30.10  Aligned_cols=77  Identities=14%  Similarity=0.103  Sum_probs=44.0

Q ss_pred             CCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCc---eeeEeecCCCCcCCCCc-ceEEEEEcCCCCcEEEEEeCCCeE
Q 014005          217 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQ---CFNIVDMKPSNMDDLTE-VITSAEFHPIYCNLLAYSSSRGFV  292 (432)
Q Consensus       217 ~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~~dg~i  292 (432)
                      -...+.+++-.|-...|+.|.++++.+|.+.....   .+..++....-+.-|.+ .+..+++.  + .++|..+ +-.+
T Consensus       133 l~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic--~-~yiA~~s-~~ev  208 (215)
T PF14761_consen  133 LSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAIC--E-GYIAVMS-DLEV  208 (215)
T ss_pred             CCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEE--e-eEEEEec-CCEE
Confidence            35578889888876678888888999998872111   11222222111122222 24566665  3 5677655 4466


Q ss_pred             EEEEc
Q 014005          293 RLVDM  297 (432)
Q Consensus       293 ~iwd~  297 (432)
                      +++.+
T Consensus       209 ~Vlkl  213 (215)
T PF14761_consen  209 LVLKL  213 (215)
T ss_pred             EEEEE
Confidence            66654

>PRK10115 protease 2; Provisional

Probab=85.46  E-value=29  Score=35.28  Aligned_cols=110  Identities=12%  Similarity=0.080  Sum_probs=62.4

Q ss_pred             CeeEEEeCCCCCEEEEE-c-CC----eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC----
Q 014005          220 NINSISNNSDCETFVSA-D-DL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----  289 (432)
Q Consensus       220 ~i~~~~~~~~~~~l~~~-~-d~----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----  289 (432)
                      .+..+.++|++++|+.+ + +|    .|++-|+. ++..+..      .+.+-   -..++|.+|+ +.|+....+    
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~-tg~~l~~------~i~~~---~~~~~w~~D~-~~~~y~~~~~~~~  196 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE-TGNWYPE------LLDNV---EPSFVWANDS-WTFYYVRKHPVTL  196 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECC-CCCCCCc------cccCc---ceEEEEeeCC-CEEEEEEecCCCC
Confidence            46678899999999977 3 22    57778887 4432211      11111   1469999998 656555432    


Q ss_pred             --CeEEEEEccccccccccceeecccccccCCccceeeeeccee-EEEEcCCCCEEEEe----eCCeEEEEec
Q 014005          290 --GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS-DIKFANDGQHLLSR----DYMNLKVFRY  355 (432)
Q Consensus       290 --g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~s~----~~~~i~iwd~  355 (432)
                        ..|+.+++.++....  ...++..             ..... ....+.|+++++..    .++.+.+++.
T Consensus       197 ~~~~v~~h~lgt~~~~d--~lv~~e~-------------~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        197 LPYQVWRHTIGTPASQD--ELVYEEK-------------DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCEEEEEECCCChhHC--eEEEeeC-------------CCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence              357777777663111  2344331             11222 33345588876652    2267888884

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=85.21  E-value=3.3  Score=38.26  Aligned_cols=57  Identities=11%  Similarity=0.073  Sum_probs=39.6

Q ss_pred             cEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       281 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                      +-+++-+..|++.++...+.+.     -.++.             .-..+.-+++||++.+|++-+.|.++++.+
T Consensus       329 kgF~~l~~~G~L~~f~st~~~~-----lL~~~-------------~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l  385 (733)
T COG4590         329 KGFYSLYRNGTLQSFYSTSEKL-----LLFER-------------AYQAPQLVAMSPNQAYLLSEDQGKIRLAQL  385 (733)
T ss_pred             ceEEEEcCCCceeeeecccCcc-----eehhh-------------hhcCcceeeeCcccchheeecCCceEEEEe
Confidence            4566667777777776554332     11111             023567789999999999987799999998

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=85.16  E-value=50  Score=34.19  Aligned_cols=109  Identities=18%  Similarity=0.206  Sum_probs=68.1

Q ss_pred             CeeEEEeCCC-CCEEEEE-c----------CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe
Q 014005          220 NINSISNNSD-CETFVSA-D----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  287 (432)
Q Consensus       220 ~i~~~~~~~~-~~~l~~~-~----------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  287 (432)
                      .|.+..|..| +.++++| .          .|.|.++... ....++.+     .-..-.+.+.++..- +| +++|  +
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~-e~~~L~~v-----~e~~v~Gav~aL~~f-ng-kllA--~  845 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFE-ELNSLELV-----AETVVKGAVYALVEF-NG-KLLA--G  845 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEe-cCCceeee-----eeeeeccceeehhhh-CC-eEEE--e
Confidence            3445557776 6666665 2          4778888887 34444433     001123344444332 23 5554  5


Q ss_pred             CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          288 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       288 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      -...|++|+..+.+.    ++.-..|             ..++..+...-.|..++.|+- +.+.+-..
T Consensus       846 In~~vrLye~t~~~e----Lr~e~~~-------------~~~~~aL~l~v~gdeI~VgDlm~Sitll~y  897 (1096)
T KOG1897|consen  846 INQSVRLYEWTTERE----LRIECNI-------------SNPIIALDLQVKGDEIAVGDLMRSITLLQY  897 (1096)
T ss_pred             cCcEEEEEEccccce----ehhhhcc-------------cCCeEEEEEEecCcEEEEeeccceEEEEEE
Confidence            667899999988754    3444443             578888888889999999976 77766655

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.13  E-value=0.2  Score=46.30  Aligned_cols=139  Identities=17%  Similarity=0.142  Sum_probs=89.1

Q ss_pred             EEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhccee
Q 014005           38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  117 (432)
Q Consensus        38 ~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~  117 (432)
                      ..|-|.+.-++.++.+..+..||-......                              .+..           +....
T Consensus        40 ~~w~~e~~nlavaca~tiv~~YD~agq~~l------------------------------e~n~-----------tg~al   78 (615)
T KOG2247|consen   40 HRWRPEGHNLAVACANTIVIYYDKAGQVIL------------------------------ELNP-----------TGKAL   78 (615)
T ss_pred             eeEecCCCceehhhhhhHHHhhhhhcceec------------------------------ccCC-----------chhHh
Confidence            456677777888888888888886553311                              1111           14556


Q ss_pred             EEEEEEcCCCCEEE-EEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceE
Q 014005          118 RVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  196 (432)
Q Consensus       118 ~l~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v  196 (432)
                      .++|  ..++..++ .+-..+.+.+||+.+.....+..-..             ..-.-..|++....++.+..  .+.+
T Consensus        79 dm~w--DkegdvlavlAek~~piylwd~n~eytqqLE~gg~-------------~s~sll~wsKg~~el~ig~~--~gn~  141 (615)
T KOG2247|consen   79 DMAW--DKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGT-------------SSKSLLAWSKGTPELVIGNN--AGNI  141 (615)
T ss_pred             hhhh--ccccchhhhhhhcCCCeeechhhhhhHHHHhccCc-------------chHHHHhhccCCcccccccc--ccce
Confidence            6777  56666544 45677899999998654322221111             12223778888888888876  8899


Q ss_pred             EEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcC
Q 014005          197 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD  238 (432)
Q Consensus       197 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d  238 (432)
                      .+++..   ..+..-.. ..|..++.++++.+.+..+..+.|
T Consensus       142 viynhg---tsR~iiv~-Gkh~RRgtq~av~lEd~vil~dcd  179 (615)
T KOG2247|consen  142 VIYNHG---TSRRIIVM-GKHQRRGTQIAVTLEDYVILCDCD  179 (615)
T ss_pred             EEEecc---chhhhhhh-cccccceeEEEecccceeeecCcH
Confidence            999887   33333333 348889999999998865444333

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=83.83  E-value=51  Score=33.23  Aligned_cols=76  Identities=12%  Similarity=0.169  Sum_probs=50.6

Q ss_pred             CCCeeEEEeC--CCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCC--Cc---EEEEEeCC
Q 014005          218 DFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY--CN---LLAYSSSR  289 (432)
Q Consensus       218 ~~~i~~~~~~--~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~---~l~~~~~d  289 (432)
                      ....+.++++  ...+++|++ ....|.+|-...........   +  -..+...|-+|.|-++.  +.   .+++++-.
T Consensus       163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~---~--s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~  237 (717)
T PF08728_consen  163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV---P--SHQHSHNIPNVSFLDDDLDPNGHVKVVATDIS  237 (717)
T ss_pred             CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc---c--ccccccCCCeeEeecCCCCCccceEEEEEecc
Confidence            4478889988  788889988 67777777665221111110   0  12355568889987654  12   78889999


Q ss_pred             CeEEEEEcc
Q 014005          290 GFVRLVDMR  298 (432)
Q Consensus       290 g~i~iwd~~  298 (432)
                      |.+.+|++.
T Consensus       238 G~v~~~~I~  246 (717)
T PF08728_consen  238 GEVWTFKIK  246 (717)
T ss_pred             CcEEEEEEE
Confidence            999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=82.97  E-value=4.9  Score=23.14  Aligned_cols=26  Identities=19%  Similarity=0.229  Sum_probs=18.0

Q ss_pred             CCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          277 PIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       277 p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      |++..++++...+++|.++|..+++.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~   26 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKV   26 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeE
Confidence            56623455555688999999987665

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PRK13684 Ycf48-like protein; Provisional

Probab=82.74  E-value=38  Score=30.90  Aligned_cols=112  Identities=12%  Similarity=0.023  Sum_probs=65.7

Q ss_pred             CCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005          218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (432)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~  297 (432)
                      ...+.++.+.|++.+++++..|.+..- .+..++.....      ...-...++++.+.|++ +.++++ ..|.+.+=..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~------~~~~~~~l~~i~~~~~g-~~~~vg-~~G~~~~~s~  242 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPH------QRNSSRRLQSMGFQPDG-NLWMLA-RGGQIRFNDP  242 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEe------eCCCcccceeeeEcCCC-CEEEEe-cCCEEEEccC
Confidence            457889999999988888877765532 11122333222      02334578999999998 776654 5676653223


Q ss_pred             cccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEE
Q 014005          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK  351 (432)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~  351 (432)
                      ..|...    .....    +...     ....+.++.+.++++.++.|.+|.+.
T Consensus       243 d~G~sW----~~~~~----~~~~-----~~~~l~~v~~~~~~~~~~~G~~G~v~  283 (334)
T PRK13684        243 DDLESW----SKPII----PEIT-----NGYGYLDLAYRTPGEIWAGGGNGTLL  283 (334)
T ss_pred             CCCCcc----ccccC----Cccc-----cccceeeEEEcCCCCEEEEcCCCeEE
Confidence            333321    11111    0000     02357889999999988888776554

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=82.49  E-value=27  Score=29.01  Aligned_cols=33  Identities=6%  Similarity=0.041  Sum_probs=21.9

Q ss_pred             eEEEEEEcCCCCEEEEEeC--CCeEEEEEccCcceeee
Q 014005          117 NRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI  152 (432)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~  152 (432)
                      ..+.+   -+|.++.+.+.  ...|++||+.+++....
T Consensus        49 QGL~~---~~g~i~esTG~yg~S~ir~~~L~~gq~~~s   83 (262)
T COG3823          49 QGLEY---LDGHILESTGLYGFSKIRVSDLTTGQEIFS   83 (262)
T ss_pred             cceee---eCCEEEEeccccccceeEEEeccCceEEEE
Confidence            35566   35666666654  35799999998875443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=81.87  E-value=0.27  Score=45.43  Aligned_cols=101  Identities=8%  Similarity=0.088  Sum_probs=67.8

Q ss_pred             CCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 014005          219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (432)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd  296 (432)
                      +....++|..++..++..  ..+.+.+||+.. . ....++    .-..+....  +.|++.. ..++.+...|.+.|++
T Consensus        75 g~aldm~wDkegdvlavlAek~~piylwd~n~-e-ytqqLE----~gg~~s~sl--l~wsKg~-~el~ig~~~gn~viyn  145 (615)
T KOG2247|consen   75 GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS-E-YTQQLE----SGGTSSKSL--LAWSKGT-PELVIGNNAGNIVIYN  145 (615)
T ss_pred             hhHhhhhhccccchhhhhhhcCCCeeechhhh-h-hHHHHh----ccCcchHHH--HhhccCC-ccccccccccceEEEe
Confidence            345567788787777654  789999999982 2 212110    001222222  7788887 7888888999999999


Q ss_pred             ccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                      ..+.+.    +-....|             ...++.++|.+.+..+..+
T Consensus       146 hgtsR~----iiv~Gkh-------------~RRgtq~av~lEd~vil~d  177 (615)
T KOG2247|consen  146 HGTSRR----IIVMGKH-------------QRRGTQIAVTLEDYVILCD  177 (615)
T ss_pred             ccchhh----hhhhccc-------------ccceeEEEecccceeeecC
Confidence            988765    2334435             6788999999987655443

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.42  E-value=50  Score=31.60  Aligned_cols=82  Identities=7%  Similarity=0.048  Sum_probs=46.9

Q ss_pred             CeeEEEeCCCCCEEEEE-cCCeEEEEeCCC--------CCce---eeEeecCCCCcC-CCCcceEEEEEcCCC--CcEEE
Q 014005          220 NINSISNNSDCETFVSA-DDLRINLWNLEI--------SDQC---FNIVDMKPSNMD-DLTEVITSAEFHPIY--CNLLA  284 (432)
Q Consensus       220 ~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~--------~~~~---~~~~~~~~~~~~-~~~~~v~~~~~~p~~--~~~l~  284 (432)
                      .|..+..++.|..++-+ .+|.+.++=.+.        .++.   -+++.+...-+. ...-.+..++|||+.  ...|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            46667777877777755 666554432110        1111   111111111111 112246788999986  46788


Q ss_pred             EEeCCCeEEEEEccccc
Q 014005          285 YSSSRGFVRLVDMRQSA  301 (432)
Q Consensus       285 ~~~~dg~i~iwd~~~~~  301 (432)
                      .-+.|+.||+||+..-.
T Consensus       185 iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEecCcEEEEEecCCcc
Confidence            88899999999988643

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=80.30  E-value=62  Score=31.76  Aligned_cols=28  Identities=14%  Similarity=0.129  Sum_probs=19.3

Q ss_pred             CCCEEEEee-CCeEEEEec---CcceeEeecc
Q 014005          338 DGQHLLSRD-YMNLKVFRY---EPVMTLSFCG  365 (432)
Q Consensus       338 dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~  365 (432)
                      .|.+++.++ +|.++.+|.   +.+-.++...
T Consensus       471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~  502 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS  502 (527)
T ss_pred             CCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence            344555665 599999999   6777666654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=80.25  E-value=42  Score=29.79  Aligned_cols=82  Identities=17%  Similarity=0.136  Sum_probs=51.8

Q ss_pred             cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcC------CCCcEEEEEeCCCeEEEEEccccccccccceee
Q 014005          237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL  310 (432)
Q Consensus       237 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  310 (432)
                      .-|.|.+||..  +..++.+     ...+.-+..+.++..|      .+ .+|+---.||+|..||..+++.    +-.+
T Consensus       220 G~G~VdvFd~~--G~l~~r~-----as~g~LNaPWG~a~APa~FG~~sg-~lLVGNFGDG~InaFD~~sG~~----~g~L  287 (336)
T TIGR03118       220 GLGYVNVFTLN--GQLLRRV-----ASSGRLNAPWGLAIAPESFGSLSG-ALLVGNFGDGTINAYDPQSGAQ----LGQL  287 (336)
T ss_pred             CcceEEEEcCC--CcEEEEe-----ccCCcccCCceeeeChhhhCCCCC-CeEEeecCCceeEEecCCCCce----eeee
Confidence            45789999998  6666655     1234445667787755      33 5666555799999999998875    3334


Q ss_pred             cccccccCCccceeeeecceeEEEEcC
Q 014005          311 RDAAESHGSKSFFTEIIASISDIKFAN  337 (432)
Q Consensus       311 ~~h~~~~~~~~~~~~~~~~v~~~~~s~  337 (432)
                      ..-...       .-....++.++|-.
T Consensus       288 ~~~~G~-------pi~i~GLWgL~fGn  307 (336)
T TIGR03118       288 LDPDNH-------PVKVDGLWSLTFGN  307 (336)
T ss_pred             cCCCCC-------eEEecCeEEeeeCC
Confidence            331000       11145678888876

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	432
3dw8_B	447	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		1e-73

>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 447

Iteration: 1
 Score =  273 bits (698), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 152/377 (40%), Positives = 226/377 (59%), Gaps = 44/377 (11%)
Query: 12  LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQH 71
           ++W  SQ  G    D+++ + DI+S +EF+ +G+ LA GD+GGRV++F+           
Sbjct: 10  IQWCFSQVKGA--VDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQ---------- 57
Query: 72  ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFI 131
                 E++    S S  EY   + FQSHEPEFDYLKSLEIEEKIN++RW    N + F+
Sbjct: 58  ------EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111
Query: 132 LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191
           LSTNDKTIKLWK        I E D  P    E   L E++    +  P+      +   
Sbjct: 112 LSTNDKTIKLWK--------ISERDKRP----EGYNLKEED--GRYRDPTTVTTLRVPVF 157
Query: 192 ENMATKIANVGNSVHARCQKVYPHAHDFXXXXXXXXXDCETFVSADDLRINLWNLEISDQ 251
             M          V A  ++++ +AH +         D ET++SADDLRINLW+LEI+D+
Sbjct: 158 RPMDLM-------VEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDR 210
Query: 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR 311
            FNIVD+KP+NM++LTEVIT+AEFHP  CN   YSSS+G +RL DMR SALCD  +++  
Sbjct: 211 SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE 270
Query: 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRYEPVMTLSFCGIYVWIL 371
           +  E   ++SFF+EII+SISD+KF++ G+++++RDY+++KV+     + +    +  + +
Sbjct: 271 E-PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWD----LNMENRPVETYQV 325
Query: 372 RQLQHSRFMSIYALSCV 388
            +   S+  S+Y   C+
Sbjct: 326 HEYLRSKLCSLYENDCI 342

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	432
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.98
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.98
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.98
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.98
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.98
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.83
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.83
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.82
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.82
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.81
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.81
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.75
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.75
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.74
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.74
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.73
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.72
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.71
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.7
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.68
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.68
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.68
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.68
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.64
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.63
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.63
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.61
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.59
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.59
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.58
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.57
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.56
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.56
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.55
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.52
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.52
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.51
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.5
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.49
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.47
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.47
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.43
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.42
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.41
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.4
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.39
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.38
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.38
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.35
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.34
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.33
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.32
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.3
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.28
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.27
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.26
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.26
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.23
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.23
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.22
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.2
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.18
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.16
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.16
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.11
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.07
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.03
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.01
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.0
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.97
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.96
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.91
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.84
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.84
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.8
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.8
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.77
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.75
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.7
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.7
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.69
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.68
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.66
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.66
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.64
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.6
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.58
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.56
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.55
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.54
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.53
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.49
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.47
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.47
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.47
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.42
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.41
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.41
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.37
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.36
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.33
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.33
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.32
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.23
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.21
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.19
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.19
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.18
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.18
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.18
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.18
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.1
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.07
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.05
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.04
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.01
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.98
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.96
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.94
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.83
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.83
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.82
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.82
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.81
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.79
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.78
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.76
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.73
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.7
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.67
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.66
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.65
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.65
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.64
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.58
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.56
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.46
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.45
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.41
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.4
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.34
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.34
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.31
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.29
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.27
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.24
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.22
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.21
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.18
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.17
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.14
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.12
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.03
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.81
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.79
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.78
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.7
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.44
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.24
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.23
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.19
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.03
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.44
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.42
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.2
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.85
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.64
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.55
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.45
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.42
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.18
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.16
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.78
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	93.72
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.6
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.49
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.46
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.27
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.11
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.93
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	92.55
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.53
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.21
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	91.79
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.33
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	91.18
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	90.19
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	88.42
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	86.16
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	85.44
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	84.95
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	84.06
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	82.61
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	82.43

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.4e-42  Score=321.70  Aligned_cols=281  Identities=16%  Similarity=0.240  Sum_probs=242.2

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ...|.+.|++++|+|++++|++|+.||+|+|||+.+++..                           ..+.+|.      
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~---------------------------~~l~~h~------  150 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE---------------------------RTLKGHT------  150 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC---------------------------EEECCCS------
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE---------------------------EEEeccC------
Confidence            3478999999999999999999999999999999887643                           6889999      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                            ..|.+++|  +|++++|++|+.|++|++||+.+++.  +..+..|.           ..|.+++|+|++.++++
T Consensus       151 ------~~V~~v~~--~~~~~~l~sgs~D~~i~iwd~~~~~~--~~~~~~h~-----------~~V~~v~~~p~~~~l~s  209 (410)
T 1vyh_C          151 ------DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFEC--IRTMHGHD-----------HNVSSVSIMPNGDHIVS  209 (410)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCE--EECCCCCS-----------SCEEEEEECSSSSEEEE
T ss_pred             ------CcEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCce--eEEEcCCC-----------CCEEEEEEeCCCCEEEE
Confidence                  99999999  89999999999999999999988763  33445555           78999999999999999


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      ++.  |+.|++||++   .+.++..+ .+|...|.+++++|++.++++| .|++|++||++ .+.+...+       .+|
T Consensus       210 ~s~--D~~i~~wd~~---~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~-~~~~~~~~-------~~h  275 (410)
T 1vyh_C          210 ASR--DKTIKMWEVQ---TGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA-TKECKAEL-------REH  275 (410)
T ss_dssp             EET--TSEEEEEETT---TCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEE-------CCC
T ss_pred             EeC--CCeEEEEECC---CCcEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECC-CCceeeEe-------cCC
Confidence            998  9999999998   77888888 7999999999999999999999 99999999999 56666655       789


Q ss_pred             CcceEEEEEcCC--------------------CCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeee
Q 014005          267 TEVITSAEFHPI--------------------YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (432)
Q Consensus       267 ~~~v~~~~~~p~--------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  326 (432)
                      ...|.+++|+|+                    + .+|++|+.|+.|++||+++++.    +..+.+|             
T Consensus       276 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~sgs~D~~i~iwd~~~~~~----~~~~~~h-------------  337 (410)
T 1vyh_C          276 RHVVECISWAPESSYSSISEATGSETKKSGKPG-PFLLSGSRDKTIKMWDVSTGMC----LMTLVGH-------------  337 (410)
T ss_dssp             SSCEEEEEECCSCGGGGGGGCCSCC-------C-CEEEEEETTSEEEEEETTTTEE----EEEEECC-------------
T ss_pred             CceEEEEEEcCcccccchhhhccccccccCCCC-CEEEEEeCCCeEEEEECCCCce----EEEEECC-------------
Confidence            999999999996                    4 6899999999999999998876    6788887             


Q ss_pred             ecceeEEEEcCCCCEEEEeeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeee
Q 014005          327 IASISDIKFANDGQHLLSRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSA  402 (432)
Q Consensus       327 ~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~  402 (432)
                      ...|.+++|+|+|++|++|++ ++|++||+   +++..+..|..           .+..+.......++++|+.|+.|++
T Consensus       338 ~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~-----------~v~~l~~~~~~~~l~sgs~D~~i~v  406 (410)
T 1vyh_C          338 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-----------FVTSLDFHKTAPYVVTGSVDQTVKV  406 (410)
T ss_dssp             SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS-----------CEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC-----------cEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            789999999999999999754 99999999   67777877764           2222222222235899999999999


Q ss_pred             ecc
Q 014005          403 LSA  405 (432)
Q Consensus       403 ~~~  405 (432)
                      |+.
T Consensus       407 W~~  409 (410)
T 1vyh_C          407 WEC  409 (410)
T ss_dssp             EC-
T ss_pred             EeC
Confidence            983

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.3e-41  Score=307.73  Aligned_cols=282  Identities=16%  Similarity=0.167  Sum_probs=234.6

Q ss_pred             ccCCCcEEEEEEcCC----CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005           29 LQDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~----g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~  104 (432)
                      ..|.+.|++++|+|+    +++|++|+.|++|+||++..++.                         .....+.+|.   
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-------------------------~~~~~l~gh~---   80 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-------------------------DLQWSLEGHQ---   80 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-------------------------EEEEEECCCS---
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-------------------------eeeeeeccCC---
Confidence            479999999999985    67899999999999999987542                         2345788999   


Q ss_pred             cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                               ..|.+++|  ++++.++++++.|++|++||+.+++....  +..+.           ..+..++|+|++.+
T Consensus        81 ---------~~v~~~~~--~~~~~~l~s~s~D~~i~lWd~~~~~~~~~--~~~~~-----------~~~~~~~~spdg~~  136 (321)
T 3ow8_A           81 ---------LGVVSVDI--SHTLPIAASSSLDAHIRLWDLENGKQIKS--IDAGP-----------VDAWTLAFSPDSQY  136 (321)
T ss_dssp             ---------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEE--EECCT-----------TCCCCEEECTTSSE
T ss_pred             ---------CCEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCCEEEE--EeCCC-----------ccEEEEEECCCCCE
Confidence                     99999999  89999999999999999999998874332  33333           56888999999999


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (432)
                      +++++.  ++.+++|+++   ..+....+ ..+...+.+++|+|++++|++| .|+.|++||++ +++.+..+       
T Consensus       137 l~~g~~--dg~v~i~~~~---~~~~~~~~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~-~~~~~~~~-------  202 (321)
T 3ow8_A          137 LATGTH--VGKVNIFGVE---SGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA-TGKLLHTL-------  202 (321)
T ss_dssp             EEEECT--TSEEEEEETT---TCSEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEE-------
T ss_pred             EEEEcC--CCcEEEEEcC---CCceeEEe-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECC-CCcEEEEE-------
Confidence            999988  9999999998   56666666 6788899999999999999999 99999999999 67777766       


Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  343 (432)
                      .+|...|++++|+|++ ++|++|+.||.|++||+++++.    ...+.+|             ...|.+++|+|+|++|+
T Consensus       203 ~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h-------------~~~v~~~~~sp~~~~l~  264 (321)
T 3ow8_A          203 EGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANL----AGTLSGH-------------ASWVLNVAFCPDDTHFV  264 (321)
T ss_dssp             CCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCE----EEEECCC-------------SSCEEEEEECTTSSEEE
T ss_pred             cccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcce----eEEEcCC-------------CCceEEEEECCCCCEEE
Confidence            7899999999999999 9999999999999999998775    5788887             78999999999999999


Q ss_pred             Eee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          344 SRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       344 s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      +++ |++|++||+   +++.++..|..           .+..+........+++|+.|+.|++|+.
T Consensus       265 s~s~D~~v~iwd~~~~~~~~~~~~h~~-----------~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          265 SSSSDKSVKVWDVGTRTCVHTFFDHQD-----------QVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSS-----------CEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             EEeCCCcEEEEeCCCCEEEEEEcCCCC-----------cEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            975 499999999   56666666653           2222222222235889999999999983

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.3e-40  Score=302.32  Aligned_cols=283  Identities=16%  Similarity=0.205  Sum_probs=232.1

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ...|.+.|++++|+|+|++|++|+.||+|+|||..+++.                           ...+..|.      
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~---------------------------~~~~~~~~------   97 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---------------------------VHAIPLRS------   97 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE---------------------------EEEEECSS------
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc---------------------------ceEeecCC------
Confidence            346899999999999999999999999999999887653                           36778888      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (432)
                            ..|.+++|  +|+++++++|+.|+.|++|++.++.  ......+..|.           +.+.++.|++++. +
T Consensus        98 ------~~v~~~~~--s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~-l  157 (340)
T 1got_B           98 ------SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-----------GYLSCCRFLDDNQ-I  157 (340)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCS-----------SCEEEEEEEETTE-E
T ss_pred             ------ccEEEEEE--CCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCC-----------ccEEEEEECCCCc-E
Confidence                  89999999  8999999999999999999997653  22333344444           7788899988776 6


Q ss_pred             ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (432)
                      ++++.  |+.+++||++   +++++..+ .+|.+.|.+++|+|+++++++| .|+.|++||++ .+.+...+       .
T Consensus       158 ~s~s~--d~~i~~wd~~---~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~-~~~~~~~~-------~  223 (340)
T 1got_B          158 VTSSG--DTTCALWDIE---TGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-EGMCRQTF-------T  223 (340)
T ss_dssp             EEEET--TSCEEEEETT---TTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCSEEEEE-------C
T ss_pred             EEEEC--CCcEEEEECC---CCcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC-CCeeEEEE-------c
Confidence            66666  9999999998   77888888 8999999999999999999999 99999999999 66677665       8


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      +|...|++++|+|++ ++|++|+.||.|++||+++++.    +..+..+ .          +...|.+++|+|+|++|++
T Consensus       224 ~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~----~~~~~~~-~----------~~~~v~~~~~s~~g~~l~~  287 (340)
T 1got_B          224 GHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQE----LMTYSHD-N----------IICGITSVSFSKSGRLLLA  287 (340)
T ss_dssp             CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEECCT-T----------CCSCEEEEEECTTSSEEEE
T ss_pred             CCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcE----EEEEccC-C----------cccceEEEEECCCCCEEEE
Confidence            899999999999999 9999999999999999998764    3444321 0          1357999999999999999


Q ss_pred             eeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          345 RDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       345 ~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      |++ +.|++||+   +.+..+..|..           .+..+.......++++|+.|+.|++|+
T Consensus       288 g~~d~~i~vwd~~~~~~~~~~~~h~~-----------~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          288 GYDDFNCNVWDALKADRAGVLAGHDN-----------RVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSS-----------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ECCCCeEEEEEcccCcEeeEeecCCC-----------cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            855 99999999   56666766654           222222222233589999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=8.2e-40  Score=293.93  Aligned_cols=252  Identities=16%  Similarity=0.208  Sum_probs=214.8

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .|.+.|++++|+|+|++|++|+.||+|+|||+++++                           .+..+.+|.        
T Consensus        11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~---------------------------~~~~~~~~~--------   55 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV---------------------------EVRSIQVTE--------   55 (304)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS--------
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc---------------------------eeEEeeccC--------
Confidence            688999999999999999999999999999998865                           336788898        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                          ..|.+++|  +|++++|++|+.|+.|++||+.+++.  +..+..|.           +.|.+++|+|++.++++++
T Consensus        56 ----~~v~~~~~--~~~~~~l~s~s~d~~i~vwd~~~~~~--~~~~~~h~-----------~~v~~~~~~~~~~~l~sgs  116 (304)
T 2ynn_A           56 ----TPVRAGKF--IARKNWIIVGSDDFRIRVFNYNTGEK--VVDFEAHP-----------DYIRSIAVHPTKPYVLSGS  116 (304)
T ss_dssp             ----SCEEEEEE--EGGGTEEEEEETTSEEEEEETTTCCE--EEEEECCS-----------SCEEEEEECSSSSEEEEEE
T ss_pred             ----CcEEEEEE--eCCCCEEEEECCCCEEEEEECCCCcE--EEEEeCCC-----------CcEEEEEEcCCCCEEEEEC
Confidence                89999999  78999999999999999999998873  33344455           7899999999999999999


Q ss_pred             eeccceEEEEeecccccc-eeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          190 WTENMATKIANVGNSVHA-RCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      .  |+.|++||++   .. .+.+.+ .+|...|.+++|+| ++..+++| .|++|++||++.........       .+|
T Consensus       117 ~--D~~v~lWd~~---~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-------~~~  183 (304)
T 2ynn_A          117 D--DLTVKLWNWE---NNWALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-------TGQ  183 (304)
T ss_dssp             T--TSCEEEEEGG---GTTEEEEEE-CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE-------CCC
T ss_pred             C--CCeEEEEECC---CCcchhhhh-cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec-------cCC
Confidence            8  9999999998   33 445566 79999999999999 67889999 99999999998433333222       466


Q ss_pred             CcceEEEEEcC--CCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          267 TEVITSAEFHP--IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       267 ~~~v~~~~~~p--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      ...+..+.|+|  ++ .+|++|+.|+.|++||+++++.    +..+.+|             ...|..++|+|++++|++
T Consensus       184 ~~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~~~~----~~~~~~h-------------~~~v~~~~~~p~~~~l~s  245 (304)
T 2ynn_A          184 ERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSC----VATLEGH-------------MSNVSFAVFHPTLPIIIS  245 (304)
T ss_dssp             TTCEEEEEECCSTTC-CEEEEEETTSEEEEEETTTTEE----EEEEECC-------------SSCEEEEEECSSSSEEEE
T ss_pred             cCcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCCCCcc----ceeeCCC-------------CCCEEEEEECCCCCEEEE
Confidence            67899999987  55 7999999999999999998876    6888887             789999999999999999


Q ss_pred             ee-CCeEEEEec---CcceeEeecce
Q 014005          345 RD-YMNLKVFRY---EPVMTLSFCGI  366 (432)
Q Consensus       345 ~~-~~~i~iwd~---~~~~~~~~~~~  366 (432)
                      |+ |++|++||+   +.++.+..+..
T Consensus       246 ~s~Dg~i~iWd~~~~~~~~~~~~~~~  271 (304)
T 2ynn_A          246 GSEDGTLKIWNSSTYKVEKTLNVGLE  271 (304)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCSSS
T ss_pred             EcCCCeEEEEECCCCceeeeccCCCc
Confidence            85 499999999   56667766543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.4e-39  Score=289.29  Aligned_cols=291  Identities=14%  Similarity=0.132  Sum_probs=229.8

Q ss_pred             ccCCCcEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ..|.+.|++++|+|++ ++|++|+.|++|++|++......                      ....+..+.+|.      
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------------~~~~~~~~~~h~------   65 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------------FGVPVRSFKGHS------   65 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------------EEEEEEEEECCS------
T ss_pred             ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----------------------ccccceEEeCCc------
Confidence            4799999999999965 89999999999999998754311                      123456789999      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                            ..|.+++|  +|++++|++|+.|++|++||+.+++..  ..+..|.           ..|.+++|++++.++++
T Consensus        66 ------~~v~~~~~--s~dg~~l~s~s~D~~v~~wd~~~~~~~--~~~~~h~-----------~~v~~~~~~~~~~~l~s  124 (319)
T 3frx_A           66 ------HIVQDCTL--TADGAYALSASWDKTLRLWDVATGETY--QRFVGHK-----------SDVMSVDIDKKASMIIS  124 (319)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEE--EEEECCS-----------SCEEEEEECTTSCEEEE
T ss_pred             ------ccEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCee--EEEccCC-----------CcEEEEEEcCCCCEEEE
Confidence                  99999999  899999999999999999999988743  3344455           78999999999999999


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC------CEEEEE-cCCeEEEEeCCCCCceeeEeecCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC------ETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (432)
                      ++.  |+.+++||++    ..++..+ .+|...|.++++.|..      ..++++ .|+.|++||++ ..+....+    
T Consensus       125 ~s~--D~~i~vwd~~----~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~----  192 (319)
T 3frx_A          125 GSR--DKTIKVWTIK----GQCLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-QFQIEADF----  192 (319)
T ss_dssp             EET--TSCEEEEETT----SCEEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETT-TTEEEEEE----
T ss_pred             EeC--CCeEEEEECC----CCeEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC-cchhheee----
Confidence            998  9999999986    3566677 7899999999999854      478888 99999999999 55555554    


Q ss_pred             CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (432)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~  340 (432)
                         .+|...|++++|+|++ ++|++|+.||.|++||+++++.    +..+..              ...|.+++|+|+|.
T Consensus       193 ---~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~----~~~~~~--------------~~~v~~~~~sp~~~  250 (319)
T 3frx_A          193 ---IGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKA----MYTLSA--------------QDEVFSLAFSPNRY  250 (319)
T ss_dssp             ---CCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEE----EEEEEC--------------CSCEEEEEECSSSS
T ss_pred             ---cCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE----EEEecC--------------CCcEEEEEEcCCCC
Confidence               7899999999999999 9999999999999999998775    566665              36899999999999


Q ss_pred             EEEEeeCCeEEEEecCc---ceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          341 HLLSRDYMNLKVFRYEP---VMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       341 ~l~s~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      +|+++.++.+++|++..   +..+..+..  ... .........+.......++++|+.||.|++|+.
T Consensus       251 ~la~~~~~~i~v~~~~~~~~~~~~~~~~~--~~~-~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~  315 (319)
T 3frx_A          251 WLAAATATGIKVFSLDPQYLVDDLRPEFA--GYS-KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV  315 (319)
T ss_dssp             EEEEEETTEEEEEEETTEEEEEEECCCCT--TCC-GGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             EEEEEcCCCcEEEEeCcCeeeeccCcccc--ccc-cCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence            99999888899999932   222222110  000 000111122222223336899999999999993

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.4e-39  Score=296.77  Aligned_cols=302  Identities=12%  Similarity=0.130  Sum_probs=220.6

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|...|.+++|+|+|++|++++ |+++|+||........       .         ...|..........|.       
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~-------~---------~~~~~~~~~~~~~~~~-------   82 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKD-------P---------CAAPNEGFCSAGVQTE-------   82 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESS-------G---------GGTTCGGGCSEEEEES-------
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecc-------c---------cccCCcceeeeeeccC-------
Confidence            45677899999999999999887 7788888743211000       0         0000011111222344       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeee--cCCCCccccccccccccccccccCCCCCccee
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKE--MDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                           ..|.+++|  ++++ .|++|+.||+|++||+.+++......  ...|.           +.|.+++|+|++.+++
T Consensus        83 -----~~v~~~~~--s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~-----------~~V~~v~~spdg~~l~  143 (344)
T 4gqb_B           83 -----AGVADLTW--VGER-GILVASDSGAVELWELDENETLIVSKFCKYEHD-----------DIVSTVSVLSSGTQAV  143 (344)
T ss_dssp             -----SCEEEEEE--ETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCS-----------SCEEEEEECTTSSEEE
T ss_pred             -----CCEEEEEE--eCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCC-----------CCEEEEEECCCCCEEE
Confidence                 78999999  7775 78899999999999999876433222  23444           7899999999999999


Q ss_pred             cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (432)
                      +++.  |+.|++||++   ++++++.+ .+|...|.+++|+|++. +++++ .|++|++||++ .++....+     ...
T Consensus       144 sgs~--d~~i~iwd~~---~~~~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~-----~~~  211 (344)
T 4gqb_B          144 SGSK--DICIKVWDLA---QQVVLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR-CPKPASQI-----GCS  211 (344)
T ss_dssp             EEET--TSCEEEEETT---TTEEEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT-SSSCEEEC-----C--
T ss_pred             EEeC--CCeEEEEECC---CCcEEEEE-cCcCCceEEEEecCCCCCceeeecccccccccccc-ccceeeee-----ecc
Confidence            9998  9999999999   78899998 89999999999999885 67888 99999999999 56655544     224


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC-CEEE
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLL  343 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~  343 (432)
                      .+...+++++|+|++.++|++|+.||.|++||+++++.    +..+.+|             ...|.+++|+|+| ++|+
T Consensus       212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~----~~~~~~h-------------~~~v~~v~fsp~g~~~la  274 (344)
T 4gqb_B          212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC----VLSSAVH-------------SQCVTGLVFSPHSVPFLA  274 (344)
T ss_dssp             --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C----CEEEECC-------------SSCEEEEEECSSSSCCEE
T ss_pred             eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE----EEEEcCC-------------CCCEEEEEEccCCCeEEE
Confidence            55667999999997658999999999999999998876    6888887             7899999999998 5788


Q ss_pred             Eee-CCeEEEEec--CcceeEeecceeeeehhhhhcccccccccc-eeeEEEEeecccceeeeeccCCeeeecC
Q 014005          344 SRD-YMNLKVFRY--EPVMTLSFCGIYVWILRQLQHSRFMSIYAL-SCVIYIITTLYLINLSALSAGMDSILQP  413 (432)
Q Consensus       344 s~~-~~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~i~~~~~~~~~~~~~  413 (432)
                      +|+ |++|+|||+  ..+..+..|..           .+..+.++ +....+++|++|+.|.+|+...+.+..+
T Consensus       275 sgs~D~~i~vwd~~~~~~~~~~~H~~-----------~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~~p  337 (344)
T 4gqb_B          275 SLSEDCSLAVLDSSLSELFRSQAHRD-----------FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAP  337 (344)
T ss_dssp             EEETTSCEEEECTTCCEEEEECCCSS-----------CEEEEEECSSSTTEEEEEETTSCEEEEECCC------
T ss_pred             EEeCCCeEEEEECCCCcEEEEcCCCC-----------CEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCCCC
Confidence            875 599999999  33344445543           22222222 2223578999999999999654444333

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.7e-39  Score=298.27  Aligned_cols=302  Identities=15%  Similarity=0.181  Sum_probs=217.9

Q ss_pred             ccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecc------cceEEEEEecCCcCCCCccccchhhhccc
Q 014005            8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDR------GGRVILFETVGGKNTPNQHISRSELEKQM   81 (432)
Q Consensus         8 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   81 (432)
                      ......|.+...       ....|.+.|++++|+|||++||+|+.      |+.|++|+..++...              
T Consensus        25 ~~~~~~w~~p~~-------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~--------------   83 (357)
T 4g56_B           25 SSKGSAWGRPVT-------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN--------------   83 (357)
T ss_dssp             ----------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C--------------
T ss_pred             CccccccCCCCC-------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc--------------
Confidence            344566765422       22468999999999999999999997      778999987665421              


Q ss_pred             cccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeee--cCCCC
Q 014005           82 DFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKE--MDHFP  159 (432)
Q Consensus        82 ~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~  159 (432)
                               ........+|.            ..|.+++|  +|++ .+++++.||+|++||+.+++......  ...|.
T Consensus        84 ---------~~~~~~~~~~~------------~~V~~~~~--s~d~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~  139 (357)
T 4g56_B           84 ---------ESLCTAGVQTE------------AGVTDVAW--VSEK-GILVASDSGAVELWEILEKESLLVNKFAKYEHD  139 (357)
T ss_dssp             ---------GGGCSEEEECS------------SCEEEEEE--ETTT-EEEEEETTSCEEEC--------CCCCEEECCCS
T ss_pred             ---------eeEecccCCCC------------CCEEEEEE--cCCC-CEEEEECCCEEEEeeccccceeEEEeeccCCCC
Confidence                     12223455677            88999999  7887 46678889999999998876332221  22334


Q ss_pred             ccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-c
Q 014005          160 FVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-D  237 (432)
Q Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~  237 (432)
                                 +.|.+++|+|++.++++++.  ++.|++||++   +++++..+ .+|...|++++|+|++. .++++ .
T Consensus       140 -----------~~V~~v~~spdg~~l~sgs~--dg~v~iwd~~---~~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~  202 (357)
T 4g56_B          140 -----------DIVKTLSVFSDGTQAVSGGK--DFSVKVWDLS---QKAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGE  202 (357)
T ss_dssp             -----------SCEEEEEECSSSSEEEEEET--TSCEEEEETT---TTEEEEEE-CCCSSCEEEEEECTTCSSCEEEEET
T ss_pred             -----------CCEEEEEECCCCCEEEEEeC--CCeEEEEECC---CCcEEEEE-cCCCCCEEEEEEccCCCceeeeecc
Confidence                       78999999999999999998  9999999998   77888888 89999999999999875 67777 9


Q ss_pred             CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccccc
Q 014005          238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH  317 (432)
Q Consensus       238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~  317 (432)
                      |+.|++||++ .++....+     ....+...+++++|+|++..+|++|+.|+.|++||+++++.    ++.+.+|    
T Consensus       203 dg~v~~wd~~-~~~~~~~~-----~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~----~~~~~~~----  268 (357)
T 4g56_B          203 DGRILLWDTR-KPKPATRI-----DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS----AQTSAVH----  268 (357)
T ss_dssp             TSCEEECCTT-SSSCBCBC-----CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG----CEEECCC----
T ss_pred             CCceEEEECC-CCceeeee-----eeccccccccchhhhhcccceEEEeecccceeEEECCCCcE----eEEEecc----
Confidence            9999999999 45544332     23567778999999998758999999999999999998876    6888886    


Q ss_pred             CCccceeeeecceeEEEEcCCC-CEEEEee-CCeEEEEec--CcceeEeecceeeeehhhhhcccccccccc-eeeEEEE
Q 014005          318 GSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKVFRY--EPVMTLSFCGIYVWILRQLQHSRFMSIYAL-SCVIYII  392 (432)
Q Consensus       318 ~~~~~~~~~~~~v~~~~~s~dg-~~l~s~~-~~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  392 (432)
                               ...|.+++|+|++ ++||+|+ |++|+|||+  ..+.....|..           .+..+.++ .....++
T Consensus       269 ---------~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~-----------~V~~vafsP~d~~~l~  328 (357)
T 4g56_B          269 ---------SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRD-----------FVTGVAWSPLDHSKFT  328 (357)
T ss_dssp             ---------SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSS-----------CEEEEEECSSSTTEEE
T ss_pred             ---------ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCC-----------CEEEEEEeCCCCCEEE
Confidence                     7899999999987 6788875 499999999  22222223332           23332222 1233588


Q ss_pred             eecccceeeeecc
Q 014005          393 TTLYLINLSALSA  405 (432)
Q Consensus       393 ~g~~~~~i~~~~~  405 (432)
                      +|+.||.|.+|+.
T Consensus       329 s~s~Dg~v~iW~~  341 (357)
T 4g56_B          329 TVGWDHKVLHHHL  341 (357)
T ss_dssp             EEETTSCEEEEEC
T ss_pred             EEcCCCeEEEEEC
Confidence            9999999999993

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.9e-39  Score=292.41  Aligned_cols=298  Identities=16%  Similarity=0.166  Sum_probs=228.7

Q ss_pred             cCCC-cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           30 QDVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        30 ~h~~-~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      .|.+ .|++++|+|+|++||+|+.|++|+|||++++...                        .......+|.       
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~------------------------~~~~~~~~h~-------   61 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI------------------------CKSVLSEGHQ-------   61 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE------------------------EEEEECSSCS-------
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce------------------------eeeeeccccC-------
Confidence            5776 8999999999999999999999999999876421                        0112236788       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           ..|.+++|  +|++++|++|+.|+.|++||+..+.......+..|.           ..|.+++|+|++.+++++
T Consensus        62 -----~~v~~~~~--sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~-----------~~v~~v~~sp~~~~l~s~  123 (345)
T 3fm0_A           62 -----RTVRKVAW--SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE-----------NEVKSVAWAPSGNLLATC  123 (345)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCS-----------SCEEEEEECTTSSEEEEE
T ss_pred             -----CcEEEEEE--CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCC-----------CCceEEEEeCCCCEEEEE
Confidence                 99999999  899999999999999999999887665566666666           889999999999999999


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCc--eeeEeecCCCCcCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDD  265 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~--~~~~~~~~~~~~~~  265 (432)
                      +.  |+.+++||++......++..+ .+|...|.+++|+|++++|++| .|+.|++||.+ .+.  +...+       .+
T Consensus       124 s~--D~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~-~~~~~~~~~~-------~~  192 (345)
T 3fm0_A          124 SR--DKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVKLYREE-EDDWVCCATL-------EG  192 (345)
T ss_dssp             ET--TSCEEEEEECTTSCEEEEEEE-CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEE-TTEEEEEEEE-------CC
T ss_pred             EC--CCeEEEEECCCCCCeEEEEEe-cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEec-CCCEEEEEEe-------cC
Confidence            98  999999999865455667777 7899999999999999999999 99999999998 443  23333       88


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccc-----------cceeecccccccCCccceeeeecceeEEE
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-----------SARILRDAAESHGSKSFFTEIIASISDIK  334 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------~~~~~~~h~~~~~~~~~~~~~~~~v~~~~  334 (432)
                      |...|++++|+|++ ++|++|+.|++|++||.........           .+..+.+            .|...|.+++
T Consensus       193 h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~h~~~v~~v~  259 (345)
T 3fm0_A          193 HESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG------------FHSRTIYDIA  259 (345)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS------------SCSSCEEEEE
T ss_pred             CCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC------------CCCCcEEEEE
Confidence            99999999999999 9999999999999999754321100           0112222            1367899999


Q ss_pred             EcCCCCEEEEe-eCCeEEEEecCc-------ceeEeecceeeeehhhhhcccccccccce-eeEEEEeecccceeeeecc
Q 014005          335 FANDGQHLLSR-DYMNLKVFRYEP-------VMTLSFCGIYVWILRQLQHSRFMSIYALS-CVIYIITTLYLINLSALSA  405 (432)
Q Consensus       335 ~s~dg~~l~s~-~~~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~i~~~~~  405 (432)
                      |+|++.+|+++ .|+.|++|+...       ...+..+..      .-+...+..+..+. ....+++|+.||.|++|+.
T Consensus       260 ~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~------~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~  333 (345)
T 3fm0_A          260 WCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH------QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKY  333 (345)
T ss_dssp             ECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET------TSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred             EecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec------ccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence            99999999997 559999999811       111111100      00112222222222 2236899999999999995


Q ss_pred             C
Q 014005          406 G  406 (432)
Q Consensus       406 ~  406 (432)
                      .
T Consensus       334 ~  334 (345)
T 3fm0_A          334 Q  334 (345)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.3e-39  Score=293.87  Aligned_cols=284  Identities=16%  Similarity=0.189  Sum_probs=230.9

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ...|.+.|+|++|+|++++||+|+.||+|+|||..+++.                           ...+..|.      
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~---------------------------~~~~~~~~------  106 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK---------------------------EHAVTMPC------  106 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------------EEEEECSS------
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc---------------------------ceEEecCC------
Confidence            347999999999999999999999999999999877652                           25667777      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcce----eeeeecCCCCccccccccccccccccccCCCCCc
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV----KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  183 (432)
                            ..|.+++|  +|++.++++++.|+.+++|++.....    .....+..|.           +.+.++.|++++.
T Consensus       107 ------~~v~~~~~--sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~  167 (354)
T 2pbi_B          107 ------TWVMACAY--APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT-----------NYLSACSFTNSDM  167 (354)
T ss_dssp             ------SCCCEEEE--CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS-----------SCEEEEEECSSSS
T ss_pred             ------CCEEEEEE--CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccC-----------CcEEEEEEeCCCC
Confidence                  88999999  89999999999999999999864321    1111222333           7889999999999


Q ss_pred             ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCC
Q 014005          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (432)
                      .+++++.  |+.|++||++   +++++..+ .+|...|.+++++|  +++.+++| .|+.|++||++ +++++..+    
T Consensus       168 ~l~t~s~--D~~v~lwd~~---~~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~-~~~~~~~~----  236 (354)
T 2pbi_B          168 QILTASG--DGTCALWDVE---SGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR-SGQCVQAF----  236 (354)
T ss_dssp             EEEEEET--TSEEEEEETT---TCCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT-TCCEEEEE----
T ss_pred             EEEEEeC--CCcEEEEeCC---CCeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC-CCcEEEEe----
Confidence            9999988  9999999998   77888888 79999999999987  46899999 99999999999 67777766    


Q ss_pred             CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (432)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~  340 (432)
                         .+|...|++++|+|++ .+|++|+.|++|++||+++++.    ...+..+.           +...+.+++|+|+|+
T Consensus       237 ---~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~----~~~~~~~~-----------~~~~~~~~~~s~~g~  297 (354)
T 2pbi_B          237 ---ETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADRE----VAIYSKES-----------IIFGASSVDFSLSGR  297 (354)
T ss_dssp             ---CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEECCTT-----------CCSCEEEEEECTTSS
T ss_pred             ---cCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcE----EEEEcCCC-----------cccceeEEEEeCCCC
Confidence               8899999999999999 9999999999999999997664    34444320           134788999999999


Q ss_pred             EEEEeeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          341 HLLSRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       341 ~l~s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      +|++|+. +.|++||+   ..+..+..|..           .+..+.......++++|+.|+.|++|+
T Consensus       298 ~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~-----------~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          298 LLFAGYNDYTINVWDVLKGSRVSILFGHEN-----------RVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEEETTSCEEEEETTTCSEEEEECCCSS-----------CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEEEECCCcEEEEECCCCceEEEEECCCC-----------cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999854 99999999   55666666653           222222222233689999999999995

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.6e-39  Score=299.06  Aligned_cols=292  Identities=17%  Similarity=0.235  Sum_probs=229.3

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ...|.+.|++++|+|+|++|++|+.||+|+|||..+++                           ....+.+|.      
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~---------------------------~~~~~~~h~------  108 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ---------------------------KTHAIKLHC------  108 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE---------------------------EEEEEECCC------
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------------------cceEEecCC------
Confidence            34799999999999999999999999999999998765                           336788898      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-----eeeeeecCCCCccccccccccccccccccCCCCC
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-----VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  182 (432)
                            ..|.+++|  +|+++++++|+.|+.+++||+....     ......+..|.           +.+.++.|.|+.
T Consensus       109 ------~~v~~~~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~-----------~~v~~~~~~~~~  169 (380)
T 3iz6_a          109 ------PWVMECAF--APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHK-----------GYASSCQYVPDQ  169 (380)
T ss_dssp             ------TTCCCCEE--CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCS-----------SCCCCCBCCSSS
T ss_pred             ------CCEEEEEE--CCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCC-----------cceEEEEEecCC
Confidence                  89999999  8999999999999999999997532     11122233444           778899999874


Q ss_pred             -cceecceeeccceEEEEeecccccceeeEEe----ecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCceeeE
Q 014005          183 -AHGYHLEWTENMATKIANVGNSVHARCQKVY----PHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNI  255 (432)
Q Consensus       183 -~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~----~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~  255 (432)
                       ..+++++.  |+.+++||+.   +++++..+    ..+|...|.++++++ +++++++| .|++|++||++.....+..
T Consensus       170 ~~~l~s~s~--D~~i~~wd~~---~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~  244 (380)
T 3iz6_a          170 ETRLITGSG--DQTCVLWDVT---TGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT  244 (380)
T ss_dssp             SSCEEEECT--TSCEEEECTT---TCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE
T ss_pred             CCEEEEECC--CCcEEEEEcC---CCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence             56888887  9999999998   55666554    246889999999987 78899999 9999999999855566665


Q ss_pred             eecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEE
Q 014005          256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (432)
Q Consensus       256 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~  335 (432)
                      +       .+|...|++++|+|++ ++|++|+.||+|++||+++++.    +..+..|+....      .+...|.+++|
T Consensus       245 ~-------~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~----~~~~~~~~~~~~------~~~~~v~~~~~  306 (380)
T 3iz6_a          245 Y-------HGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQ----LQVYNREPDRND------NELPIVTSVAF  306 (380)
T ss_dssp             E-------CCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEE----EEEECCCCSSSC------CSSCSCSEEEE
T ss_pred             E-------CCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcE----EEEecccccccc------cccCceEEEEE
Confidence            5       8899999999999999 9999999999999999998875    455554311100      01245899999


Q ss_pred             cCCCCEEEEeeC-CeEEEEec---CcceeE----eecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          336 ANDGQHLLSRDY-MNLKVFRY---EPVMTL----SFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       336 s~dg~~l~s~~~-~~i~iwd~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      +|+|++|++|+. |.|++||+   +.+..+    ..|.           ..+..+.......++++|+.|+.|++|+.
T Consensus       307 s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~-----------~~v~~l~~s~dg~~l~sgs~D~~i~iW~~  373 (380)
T 3iz6_a          307 SISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHE-----------GRISCLGLSSDGSALCTGSWDKNLKIWAF  373 (380)
T ss_dssp             CSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCC-----------CCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred             CCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCC-----------CceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence            999999999854 99999999   333333    2222           22333333333346999999999999994

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.4e-38  Score=285.35  Aligned_cols=265  Identities=14%  Similarity=0.154  Sum_probs=224.2

Q ss_pred             chhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccc
Q 014005            4 NREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF   83 (432)
Q Consensus         4 ~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   83 (432)
                      .+..+.....|++...-. ........|...|.+++|+|++.++++|+.|++|++||+.+++.                 
T Consensus        53 tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~-----------------  114 (321)
T 3ow8_A           53 TGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ-----------------  114 (321)
T ss_dssp             EEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------------
T ss_pred             EEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE-----------------
Confidence            334455667777652100 00112347899999999999999999999999999999988653                 


Q ss_pred             cccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccc
Q 014005           84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS  163 (432)
Q Consensus        84 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  163 (432)
                                +..+..|.            ..+.+++|  +|++++|++++.|+.|++|++.+++....  +..+.    
T Consensus       115 ----------~~~~~~~~------------~~~~~~~~--spdg~~l~~g~~dg~v~i~~~~~~~~~~~--~~~~~----  164 (321)
T 3ow8_A          115 ----------IKSIDAGP------------VDAWTLAF--SPDSQYLATGTHVGKVNIFGVESGKKEYS--LDTRG----  164 (321)
T ss_dssp             ----------EEEEECCT------------TCCCCEEE--CTTSSEEEEECTTSEEEEEETTTCSEEEE--EECSS----
T ss_pred             ----------EEEEeCCC------------ccEEEEEE--CCCCCEEEEEcCCCcEEEEEcCCCceeEE--ecCCC----
Confidence                      36677787            88999999  89999999999999999999988764332  22233    


Q ss_pred             ccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEE
Q 014005          164 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRIN  242 (432)
Q Consensus       164 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~  242 (432)
                             ..+.+++|+|++.++++++.  |+.|++||++   +++++..+ .+|...|.+++|+|++++|++| .|+.|+
T Consensus       165 -------~~v~~~~~spdg~~lasg~~--dg~i~iwd~~---~~~~~~~~-~~h~~~v~~l~~spd~~~l~s~s~dg~i~  231 (321)
T 3ow8_A          165 -------KFILSIAYSPDGKYLASGAI--DGIINIFDIA---TGKLLHTL-EGHAMPIRSLTFSPDSQLLVTASDDGYIK  231 (321)
T ss_dssp             -------SCEEEEEECTTSSEEEEEET--TSCEEEEETT---TTEEEEEE-CCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred             -------ceEEEEEECCCCCEEEEEcC--CCeEEEEECC---CCcEEEEE-cccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence                   57889999999999999998  9999999998   77888888 8899999999999999999999 999999


Q ss_pred             EEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccc
Q 014005          243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF  322 (432)
Q Consensus       243 lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~  322 (432)
                      +||++ .......+       .+|...|.+++|+|++ .+|++++.|++|++||+++++.    +..+.+|         
T Consensus       232 iwd~~-~~~~~~~~-------~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~~----~~~~~~h---------  289 (321)
T 3ow8_A          232 IYDVQ-HANLAGTL-------SGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRTC----VHTFFDH---------  289 (321)
T ss_dssp             EEETT-TCCEEEEE-------CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEECCC---------
T ss_pred             EEECC-CcceeEEE-------cCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCEE----EEEEcCC---------
Confidence            99999 56666655       8899999999999999 9999999999999999998876    6788887         


Q ss_pred             eeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          323 FTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       323 ~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                          ...|.+++|+|+|++|+++++ ++|++||+
T Consensus       290 ----~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          290 ----QDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             ----SSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             ----CCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence                789999999999999999754 99999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=9.1e-38  Score=290.93  Aligned_cols=307  Identities=12%  Similarity=0.153  Sum_probs=223.3

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc----
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF----  104 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~----  104 (432)
                      +.|.+.|+|++|+|+|++||+|+ +++++||++.+++..                           ..+..|....    
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~---------------------------~~l~~~~~~~~~~~  112 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV---------------------------ARLSDDSAANKDPE  112 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE---------------------------EEECC---------
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEE---------------------------EEecCccccccccc
Confidence            46999999999999999999987 689999999887633                           2222221000    


Q ss_pred             --cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005          105 --DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (432)
Q Consensus       105 --~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  182 (432)
                        ...........|.+++|  +|++++|++|+.|+.|++||+.+++..  ..+..|.           ..|.+++|+|++
T Consensus       113 ~~~~~~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~i~iwd~~~~~~~--~~~~~h~-----------~~v~~~~~~p~~  177 (393)
T 1erj_A          113 NLNTSSSPSSDLYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIV--MILQGHE-----------QDIYSLDYFPSG  177 (393)
T ss_dssp             --------CCCCBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEE--EEECCCS-----------SCEEEEEECTTS
T ss_pred             cccccccCCCceeEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEE--EEEccCC-----------CCEEEEEEcCCC
Confidence              00000000145899999  899999999999999999999987643  3344455           789999999999


Q ss_pred             cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCC
Q 014005          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (432)
Q Consensus       183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (432)
                      .++++++.  |+.+++||++   ++++...+  .+...+.+++++| +++++++| .|+.|++||++ .+..+..+....
T Consensus       178 ~~l~s~s~--d~~v~iwd~~---~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~-~~~~~~~~~~~~  249 (393)
T 1erj_A          178 DKLVSGSG--DRTVRIWDLR---TGQCSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSEN  249 (393)
T ss_dssp             SEEEEEET--TSEEEEEETT---TTEEEEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT-TCCEEEEEC---
T ss_pred             CEEEEecC--CCcEEEEECC---CCeeEEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC-CCcEEEeecccc
Confidence            99999988  9999999998   66776666  3567899999999 89999999 99999999999 566665553333


Q ss_pred             CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccc--------ccceeecccccccCCccceeeeecceeE
Q 014005          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD--------HSARILRDAAESHGSKSFFTEIIASISD  332 (432)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~--------~~~~~~~~h~~~~~~~~~~~~~~~~v~~  332 (432)
                      ....+|...|.+++|+|++ ++|++|+.||.|++||+++.....        .....+.+|             ...|.+
T Consensus       250 ~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h-------------~~~v~~  315 (393)
T 1erj_A          250 ESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-------------KDFVLS  315 (393)
T ss_dssp             ---CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC---------------CEEEEEECC-------------SSCEEE
T ss_pred             cCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc-------------cCcEEE
Confidence            3346789999999999999 999999999999999998643210        012334444             789999


Q ss_pred             EEEcCCCCEEEEeeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          333 IKFANDGQHLLSRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       333 ~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      ++|+|++++|++|+. +.|++||+   +++..+..|...+....+...     .........+++|+.||.|++|+.
T Consensus       316 ~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~-----~~~~p~~~~l~sgs~Dg~i~iW~~  387 (393)
T 1erj_A          316 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG-----SSLGPEYNVFATGSGDCKARIWKY  387 (393)
T ss_dssp             EEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS-----CTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC-----cCcCCCCCEEEEECCCCcEEECcc
Confidence            999999999999855 99999999   667777777642111111000     000012346899999999999984

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3e-38  Score=295.73  Aligned_cols=263  Identities=16%  Similarity=0.258  Sum_probs=224.8

Q ss_pred             chhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccc
Q 014005            4 NREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF   83 (432)
Q Consensus         4 ~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   83 (432)
                      ++..+.....|++...   ........|.+.|++++|+|+|++|++|+.|++|+|||+.+.+                  
T Consensus       125 s~s~Dg~i~vwd~~~~---~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~------------------  183 (410)
T 1vyh_C          125 SASEDATIKVWDYETG---DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE------------------  183 (410)
T ss_dssp             EEESSSCEEEEETTTC---CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC------------------
T ss_pred             EEeCCCeEEEEECCCC---cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------------------
Confidence            3344556667776531   1223344689999999999999999999999999999997754                  


Q ss_pred             cccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccc
Q 014005           84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS  163 (432)
Q Consensus        84 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  163 (432)
                               ++..+.+|.            ..|.+++|  +|+++++++|+.|++|++||+.++....  .+..|.    
T Consensus       184 ---------~~~~~~~h~------------~~V~~v~~--~p~~~~l~s~s~D~~i~~wd~~~~~~~~--~~~~h~----  234 (410)
T 1vyh_C          184 ---------CIRTMHGHD------------HNVSSVSI--MPNGDHIVSASRDKTIKMWEVQTGYCVK--TFTGHR----  234 (410)
T ss_dssp             ---------EEECCCCCS------------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEE--EEECCS----
T ss_pred             ---------eeEEEcCCC------------CCEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCcEEE--EEeCCC----
Confidence                     446788999            99999999  8999999999999999999999887432  334444    


Q ss_pred             ccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC--------------
Q 014005          164 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--------------  229 (432)
Q Consensus       164 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------  229 (432)
                             ..+..+.+++++.++++++.  |+.|++||+.   ...+...+ .+|...|.+++|+|+              
T Consensus       235 -------~~v~~~~~~~~g~~l~s~s~--D~~v~vwd~~---~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~  301 (410)
T 1vyh_C          235 -------EWVRMVRPNQDGTLIASCSN--DQTVRVWVVA---TKECKAEL-REHRHVVECISWAPESSYSSISEATGSET  301 (410)
T ss_dssp             -------SCEEEEEECTTSSEEEEEET--TSCEEEEETT---TCCEEEEE-CCCSSCEEEEEECCSCGGGGGGGCCSCC-
T ss_pred             -------ccEEEEEECCCCCEEEEEcC--CCeEEEEECC---CCceeeEe-cCCCceEEEEEEcCcccccchhhhccccc
Confidence                   67899999999999999998  9999999998   67788888 889999999999996              


Q ss_pred             ------CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          230 ------CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       230 ------~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                            +.++++| .|+.|++||++ .+.++..+       .+|...|++++|+|++ ++|++|+.||.|++||+++++.
T Consensus       302 ~~~~~~g~~l~sgs~D~~i~iwd~~-~~~~~~~~-------~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~~  372 (410)
T 1vyh_C          302 KKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMTL-------VGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRC  372 (410)
T ss_dssp             ------CCEEEEEETTSEEEEEETT-TTEEEEEE-------ECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCC
T ss_pred             cccCCCCCEEEEEeCCCeEEEEECC-CCceEEEE-------ECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCce
Confidence                  6789999 99999999999 67777766       7899999999999999 9999999999999999998775


Q ss_pred             ccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005          303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       303 ~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~  355 (432)
                          +..+.+|             ...|++++|+|++.+|++|+ |++|++|++
T Consensus       373 ----~~~~~~h-------------~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          373 ----MKTLNAH-------------EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ----CEEEECC-------------SSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             ----EEEEcCC-------------CCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence                6888887             78999999999999999975 499999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6.1e-37  Score=280.11  Aligned_cols=297  Identities=14%  Similarity=0.107  Sum_probs=222.1

Q ss_pred             ccCCCcEEEEEE-----cC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCc
Q 014005           29 LQDVDIVSAIEF-----DK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP  102 (432)
Q Consensus        29 ~~h~~~V~~~~f-----sp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~  102 (432)
                      ..|.+.|++++|     ++ ++++|++|+.|++|+|||+...+....                    .......+.+|. 
T Consensus        18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~--------------------~~~~~~~l~~h~-   76 (343)
T 2xzm_R           18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY--------------------FGIPHKALTGHN-   76 (343)
T ss_dssp             ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB--------------------SEEEEEEECCCS-
T ss_pred             ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc--------------------cccccchhccCC-
Confidence            369999999999     77 899999999999999999976532100                    112346788999 


Q ss_pred             cccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005          103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (432)
Q Consensus       103 ~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  182 (432)
                                 ..|.+++|  +|++.++++++.|++|++||+.+++..  ..+..|.           ..|.+++|+|++
T Consensus        77 -----------~~V~~~~~--~~~~~~l~s~s~D~~v~lwd~~~~~~~--~~~~~h~-----------~~v~~v~~sp~~  130 (343)
T 2xzm_R           77 -----------HFVSDLAL--SQENCFAISSSWDKTLRLWDLRTGTTY--KRFVGHQ-----------SEVYSVAFSPDN  130 (343)
T ss_dssp             -----------SCEEEEEE--CSSTTEEEEEETTSEEEEEETTSSCEE--EEEECCC-----------SCEEEEEECSST
T ss_pred             -----------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCcEE--EEEcCCC-----------CcEEEEEECCCC
Confidence                       99999999  899999999999999999999988633  3334444           789999999999


Q ss_pred             cceecceeeccceEEEEeecccccceeeEEe--ecCCCCCeeEEEeCCCC----------CEEEEE-cCCeEEEEeCCCC
Q 014005          183 AHGYHLEWTENMATKIANVGNSVHARCQKVY--PHAHDFNINSISNNSDC----------ETFVSA-DDLRINLWNLEIS  249 (432)
Q Consensus       183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~----------~~l~~~-~d~~i~lwd~~~~  249 (432)
                      .++++++.  |+.+++||+..    .+....  ...|...|.+++|+|++          .+++++ .|+.|++||.+  
T Consensus       131 ~~l~s~~~--d~~i~~wd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--  202 (343)
T 2xzm_R          131 RQILSAGA--EREIKLWNILG----ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--  202 (343)
T ss_dssp             TEEEEEET--TSCEEEEESSS----CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--
T ss_pred             CEEEEEcC--CCEEEEEeccC----CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--
Confidence            99999988  99999999862    222222  13688899999999987          689998 99999999955  


Q ss_pred             CceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecc
Q 014005          250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (432)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~  329 (432)
                      ......+       .+|...|++++|+|++ ++|++|+.||.|++||++.....   ...+..              ...
T Consensus       203 ~~~~~~~-------~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~---~~~~~~--------------~~~  257 (343)
T 2xzm_R          203 FQIRYTF-------KAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYP---QREFDA--------------GST  257 (343)
T ss_dssp             TEEEEEE-------ECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSC---SEEEEC--------------SSC
T ss_pred             CceeEEE-------cCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCccc---ceeecC--------------CCc
Confidence            4555544       7899999999999999 99999999999999999644322   334432              357


Q ss_pred             eeEEEEcCCCCEEEEeeCCeEEEEec---Ccce--eEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          330 ISDIKFANDGQHLLSRDYMNLKVFRY---EPVM--TLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       330 v~~~~~s~dg~~l~s~~~~~i~iwd~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      |.+++|+|+++++++|.++.|++||+   ....  .+..+.........-....+..+..+....++++|+.||.|++|+
T Consensus       258 v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~  337 (343)
T 2xzm_R          258 INQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS  337 (343)
T ss_dssp             EEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred             EEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence            99999999999999888889999999   2222  222111000000000011122222222233689999999999998


Q ss_pred             c
Q 014005          405 A  405 (432)
Q Consensus       405 ~  405 (432)
                      .
T Consensus       338 ~  338 (343)
T 2xzm_R          338 F  338 (343)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.9e-37  Score=277.61  Aligned_cols=284  Identities=18%  Similarity=0.264  Sum_probs=226.5

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|.+.|++++|+|+|++|++|+.||.|++|+..+++                           ....+.+|.       
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---------------------------~~~~~~~h~-------   65 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---------------------------FEKTISGHK-------   65 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------------------------EEEEECCCS-------
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc---------------------------cchhhccCC-------
Confidence            4789999999999999999999999999999987765                           336788898       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           ..|.+++|  +|++++|++++.|+.|++||+.+++...  .+..+.           ..+.++.|+|++.+++++
T Consensus        66 -----~~v~~~~~--~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~-----------~~v~~~~~~~~~~~l~s~  125 (312)
T 4ery_A           66 -----LGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCLK--TLKGHS-----------NYVFCCNFNPQSNLIVSG  125 (312)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEE--EEECCS-----------SCEEEEEECSSSSEEEEE
T ss_pred             -----CceEEEEE--cCCCCEEEEECCCCEEEEEECCCCcEEE--EEcCCC-----------CCEEEEEEcCCCCEEEEE
Confidence                 99999999  8999999999999999999999877433  333344           678999999999999999


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      +.  |+.+++||++   ..+++..+ ..|...|.+++|+|++++++++ .|+.|++||++ .++.+..+      ...+.
T Consensus       126 ~~--d~~i~iwd~~---~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~------~~~~~  192 (312)
T 4ery_A          126 SF--DESVRIWDVK---TGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA-SGQCLKTL------IDDDN  192 (312)
T ss_dssp             ET--TSCEEEEETT---TCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEE------CCSSC
T ss_pred             eC--CCcEEEEECC---CCEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeeEE------eccCC
Confidence            98  9999999998   67788888 7899999999999999999999 99999999999 55555543      24566


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-  346 (432)
                      ..+..++|+|++ ++|++++.||.|++||+++++.    +..+.+|...          ...+......+++++|++|+ 
T Consensus       193 ~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~----------~~~~~~~~~~~~~~~l~sg~~  257 (312)
T 4ery_A          193 PPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGKC----LKTYTGHKNE----------KYCIFANFSVTGGKWIVSGSE  257 (312)
T ss_dssp             CCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEE----EEEECSSCCS----------SSCCCEEEECSSSCEEEECCT
T ss_pred             CceEEEEECCCC-CEEEEEcCCCeEEEEECCCCcE----EEEEEecCCc----------eEEEEEEEEeCCCcEEEEECC
Confidence            789999999999 9999999999999999998875    5777775110          11222333346789999975 


Q ss_pred             CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeec--ccceeeeecc
Q 014005          347 YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTL--YLINLSALSA  405 (432)
Q Consensus       347 ~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~i~~~~~  405 (432)
                      |+.|++||+   +.+..+..|..           .+..+........+++++  .|+.|++|+.
T Consensus       258 dg~i~vwd~~~~~~~~~~~~h~~-----------~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          258 DNLVYIWNLQTKEIVQKLQGHTD-----------VVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSS-----------CEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             CCEEEEEECCCchhhhhhhccCC-----------cEEEEeecCcCCceEEEEccCCccEEEecC
Confidence            499999999   56666766653           122211222222455554  6999999984

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.3e-37  Score=282.06  Aligned_cols=245  Identities=15%  Similarity=0.122  Sum_probs=200.5

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      .++...|++++|+|++ .|++|+.||+|+|||+++++..                       ......+.+|.       
T Consensus        79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~-----------------------~~~~~~~~~H~-------  127 (344)
T 4gqb_B           79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETL-----------------------IVSKFCKYEHD-------  127 (344)
T ss_dssp             EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSC-----------------------EEEEEEEECCS-------
T ss_pred             eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCce-----------------------eEeeccccCCC-------
Confidence            4567789999999986 5789999999999999987643                       11223456898       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-ceec
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYH  187 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~  187 (432)
                           ..|++++|  +|++++|++|+.|++|++||+.+++.  +..+..|.           +.|.+++|++++. .+++
T Consensus       128 -----~~V~~v~~--spdg~~l~sgs~d~~i~iwd~~~~~~--~~~~~~h~-----------~~V~~~~~~~~~~~~l~s  187 (344)
T 4gqb_B          128 -----DIVSTVSV--LSSGTQAVSGSKDICIKVWDLAQQVV--LSSYRAHA-----------AQVTCVAASPHKDSVFLS  187 (344)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCS-----------SCEEEEEECSSCTTEEEE
T ss_pred             -----CCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcE--EEEEcCcC-----------CceEEEEecCCCCCceee
Confidence                 99999999  89999999999999999999998874  33445555           7899999999986 5677


Q ss_pred             ceeeccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (432)
                      ++.  |+.|++||++   ..++...+. ..+...+.+++|+|+ ++++++| .|++|++||++ +++++..+       .
T Consensus       188 ~s~--D~~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~-~~~~~~~~-------~  254 (344)
T 4gqb_B          188 CSE--DNRILLWDTR---CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK-STSCVLSS-------A  254 (344)
T ss_dssp             EET--TSCEEEEETT---SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC-C--CCEEE-------E
T ss_pred             ecc--cccccccccc---ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC-CCcEEEEE-------c
Confidence            877  9999999998   556655542 345667999999995 5678888 99999999999 67777765       8


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC-EEE
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLL  343 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~  343 (432)
                      +|...|++++|+|++.++|++|+.|++|+|||+++++.     ..+.+|             .+.|.+++|+|+|+ +|+
T Consensus       255 ~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-----~~~~~H-------------~~~V~~v~~sp~~~~lla  316 (344)
T 4gqb_B          255 VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-----FRSQAH-------------RDFVRDATWSPLNHSLLT  316 (344)
T ss_dssp             CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-----EEECCC-------------SSCEEEEEECSSSTTEEE
T ss_pred             CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-----EEEcCC-------------CCCEEEEEEeCCCCeEEE
Confidence            99999999999999856899999999999999998764     556777             78999999999987 466


Q ss_pred             Eee-CCeEEEEec
Q 014005          344 SRD-YMNLKVFRY  355 (432)
Q Consensus       344 s~~-~~~i~iwd~  355 (432)
                      +|+ |++|++|++
T Consensus       317 s~s~D~~v~~w~v  329 (344)
T 4gqb_B          317 TVGWDHQVVHHVV  329 (344)
T ss_dssp             EEETTSCEEEEEC
T ss_pred             EEcCCCeEEEEEC
Confidence            764 699999999

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5e-37  Score=291.01  Aligned_cols=311  Identities=24%  Similarity=0.403  Sum_probs=224.6

Q ss_pred             hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005            6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS   85 (432)
Q Consensus         6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (432)
                      ......+.|+|.|+|++.  ...+++.+.|++++|+|+|++||+|+.||.|+||++.+++....                
T Consensus         4 ~~~~~~~~w~~~q~~~~~--~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~----------------   65 (447)
T 3dw8_B            4 AGGGNDIQWCFSQVKGAV--DDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS----------------   65 (447)
T ss_dssp             ----CCCCCEEEECCSCS--SSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C----------------
T ss_pred             CCCCcceeEEEEEecccc--cccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc----------------
Confidence            345578899999999963  55688999999999999999999999999999999987652100                


Q ss_pred             cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCC--CEEEEEeCCCeEEEEEccCcceeeee-ecCCCC---
Q 014005           86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIK-EMDHFP---  159 (432)
Q Consensus        86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~---  159 (432)
                      ...+++++...+++|.++|+++..+.++..|.+++|  +|++  .+|++++.|+.|++||+..+...... ....+.   
T Consensus        66 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~--~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~  143 (447)
T 3dw8_B           66 HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW--LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRY  143 (447)
T ss_dssp             CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE--CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC------
T ss_pred             ccccceeEecccccccccccccccccccCceEEEEE--cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccc
Confidence            011245567889999999999999988899999999  7787  79999999999999999865432100 000000   


Q ss_pred             ----cccc-------------------ccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEe---
Q 014005          160 ----FVSS-------------------ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVY---  213 (432)
Q Consensus       160 ----~~~~-------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~---  213 (432)
                          .+..                   .........|.+++|+|++.+++++ .  |+.|++||++..  ..+...+   
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~--~~~~~~~~~~  218 (447)
T 3dw8_B          144 RDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-D--DLRINLWHLEIT--DRSFNIVDIK  218 (447)
T ss_dssp             --CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-C--SSEEEEEETTEE--EEEEEEEECC
T ss_pred             cCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-C--CCeEEEEECCCC--Cceeeeeecc
Confidence                0000                   0001123789999999999999997 5  999999999831  2333321   


Q ss_pred             ---ecCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCCCCCce----eeEeecCCCCcCCCCc------------ceEE
Q 014005          214 ---PHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQC----FNIVDMKPSNMDDLTE------------VITS  272 (432)
Q Consensus       214 ---~~~~~~~i~~~~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~------------~v~~  272 (432)
                         ..+|...|.+++|+|++ +++++| .|+.|++||++ .+..    ...+       ..|..            .|.+
T Consensus       219 ~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~  290 (447)
T 3dw8_B          219 PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR-ASALCDRHSKLF-------EEPEDPSNRSFFSEIISSISD  290 (447)
T ss_dssp             CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT-TCSSSCTTCEEE-------CCC-----CCHHHHHTTCEEE
T ss_pred             cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc-CCccccceeeEe-------ccCCCccccccccccCceEEE
Confidence               15789999999999998 899999 99999999999 4443    4444       55554            8999


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccc-cccccccceeecccccccCCc-cce-eeeecceeEEEEcCCCCEEEEeeC-C
Q 014005          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSK-SFF-TEIIASISDIKFANDGQHLLSRDY-M  348 (432)
Q Consensus       273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~-~~~-~~~~~~v~~~~~s~dg~~l~s~~~-~  348 (432)
                      ++|+|++ ++|++++. +.|++||+++ ++.    +..+.+|....... ..+ ......+..++|+|+|++|++|+. +
T Consensus       291 ~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg  364 (447)
T 3dw8_B          291 VKFSHSG-RYMMTRDY-LSVKVWDLNMENRP----VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNN  364 (447)
T ss_dssp             EEECTTS-SEEEEEES-SEEEEEETTCCSSC----SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTT
T ss_pred             EEECCCC-CEEEEeeC-CeEEEEeCCCCccc----cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCC
Confidence            9999999 99999998 9999999997 554    57777761100000 000 000011345999999999999854 9


Q ss_pred             eEEEEec
Q 014005          349 NLKVFRY  355 (432)
Q Consensus       349 ~i~iwd~  355 (432)
                      .|++||+
T Consensus       365 ~v~iwd~  371 (447)
T 3dw8_B          365 FFRMFDR  371 (447)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEc
Confidence            9999999

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-36  Score=275.67  Aligned_cols=289  Identities=15%  Similarity=0.159  Sum_probs=214.3

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeee-ec-CCccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QS-HEPEFDY  106 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~-h~~~~~~  106 (432)
                      ..|.+.|++++|+|+  +||+|+.|++|+|||+..+..                         .....+ .+ |.     
T Consensus        11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-------------------------~~~~~~~~~~h~-----   58 (330)
T 2hes_X           11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-------------------------TLIDVLDETAHK-----   58 (330)
T ss_dssp             ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-------------------------EEEEEECTTCCC-----
T ss_pred             ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-------------------------EEEEEEecCCcc-----
Confidence            368999999999987  999999999999999976431                         122344 34 88     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-----eeeeeecCCCCccccccccccccccccccCCCC
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-----VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  181 (432)
                             ..|.+++|  +|++++|++|+.|++|++||+....     ......+..|.           ..|.+++|+|+
T Consensus        59 -------~~v~~v~~--sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~-----------~~V~~v~~sp~  118 (330)
T 2hes_X           59 -------KAIRSVAW--RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE-----------NEVKGVAWSND  118 (330)
T ss_dssp             -------SCEEEEEE--CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC---------------CEEEEEECTT
T ss_pred             -------CCEEEEEE--CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC-----------CcEEEEEECCC
Confidence                   89999999  8999999999999999999986421     12333444555           78999999999


Q ss_pred             CcceecceeeccceEEEEeeccc-ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC--ceeeEee
Q 014005          182 FAHGYHLEWTENMATKIANVGNS-VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD--QCFNIVD  257 (432)
Q Consensus       182 ~~~~~~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~--~~~~~~~  257 (432)
                      +.++++++.  |+.|++||++.. ...+++..+ .+|...|.+++|+|++++|+++ .|++|++||.+ .+  .++..+ 
T Consensus       119 g~~las~s~--D~~v~iwd~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~-~~~~~~~~~~-  193 (330)
T 2hes_X          119 GYYLATCSR--DKSVWIWETDESGEEYECISVL-QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY-DDDWECVAVL-  193 (330)
T ss_dssp             SCEEEEEET--TSCEEEEECCTTCCCCEEEEEE-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEE-TTEEEEEEEE-
T ss_pred             CCEEEEEeC--CCEEEEEeccCCCCCeEEEEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC-CCCeeEEEEc-
Confidence            999999998  999999999532 244667777 7899999999999999999999 99999999987 33  455554 


Q ss_pred             cCCCCcCCCCcceEEEEEcCC--CCcEEEEEeCCCeEEEEEcccccccc----ccceeecc-cccccCCccceeeeecce
Q 014005          258 MKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCD----HSARILRD-AAESHGSKSFFTEIIASI  330 (432)
Q Consensus       258 ~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~-h~~~~~~~~~~~~~~~~v  330 (432)
                            .+|...|.+++|+|+  + .+|++|+.|++|++||++++....    .....+.. |             ...|
T Consensus       194 ------~~h~~~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h-------------~~~v  253 (330)
T 2hes_X          194 ------NGHEGTVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVH-------------KRQV  253 (330)
T ss_dssp             ------CCCSSCEEEEEECCSSSS-CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCC-------------SSCE
T ss_pred             ------cCCCCcEEEEEecCCCCe-eEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccc-------------ccce
Confidence                  899999999999998  5 789999999999999998653110    00223333 4             6899


Q ss_pred             eEEEEcCCCCEEEEe-eCCeEEEEecC-c----ceeE-eecceeeeehhhhhcccccccccce--eeEEEEeecccceee
Q 014005          331 SDIKFANDGQHLLSR-DYMNLKVFRYE-P----VMTL-SFCGIYVWILRQLQHSRFMSIYALS--CVIYIITTLYLINLS  401 (432)
Q Consensus       331 ~~~~~s~dg~~l~s~-~~~~i~iwd~~-~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~i~  401 (432)
                      .+++|++++ +|+++ .|+.|++||.. .    +... ..|..          ..+..+....  ....+++|+.||.|+
T Consensus       254 ~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~----------~~v~~v~~~~~~~~~~las~s~Dg~v~  322 (330)
T 2hes_X          254 YNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGV----------YEINVVKWLELNGKTILATGGDDGIVN  322 (330)
T ss_dssp             EEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTT----------SCEEEEEEC-----CCEEEEETTSEEE
T ss_pred             EEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccccc----------ceEEEEEEecCCCceEEEEecCCCcEE
Confidence            999999876 66665 56999999982 1    1111 11210          0111111111  123589999999999


Q ss_pred             eecc
Q 014005          402 ALSA  405 (432)
Q Consensus       402 ~~~~  405 (432)
                      +|+.
T Consensus       323 ~W~~  326 (330)
T 2hes_X          323 FWSL  326 (330)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9984

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=9.8e-37  Score=272.89  Aligned_cols=252  Identities=13%  Similarity=0.184  Sum_probs=202.5

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|.+.|++++|+|+|++||+|+.|++|+|||+++..                         .++..++.+|.       
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-------------------------~~~~~~l~gH~-------   53 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHE-------   53 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-------------------------BCCCEEECCCS-------
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-------------------------cEEEEEEcccc-------
Confidence            4689999999999999999999999999999997542                         12446889999       


Q ss_pred             hhhhhcceeEEEEEEcC--CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC--Ccc
Q 014005          109 SLEIEEKINRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS--FAH  184 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~  184 (432)
                           +.|.+++|  ++  ++++|++|+.|++|++||+.+++...+..+..|.           ..|.+++|+|+  +.+
T Consensus        54 -----~~V~~v~~--s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~-----------~~v~~v~~~p~~~g~~  115 (297)
T 2pm7_B           54 -----GPVWRVDW--AHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS-----------ASVNSVQWAPHEYGPM  115 (297)
T ss_dssp             -----SCEEEEEE--CCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCS-----------SCEEEEEECCGGGCSE
T ss_pred             -----CCeEEEEe--cCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCC-----------CceeEEEeCcCCCCcE
Confidence                 99999999  54  4889999999999999999887544444444455           78999999998  788


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-------------CCEEEEE-cCCeEEEEeCCCCC
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-------------CETFVSA-DDLRINLWNLEISD  250 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~l~~~-~d~~i~lwd~~~~~  250 (432)
                      +++++.  |+.+++||++.... .....+ .+|...|.+++|+|+             +++|++| .|++|++||++...
T Consensus       116 l~s~s~--d~~v~~wd~~~~~~-~~~~~~-~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~  191 (297)
T 2pm7_B          116 LLVASS--DGKVSVVEFKENGT-TSPIII-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  191 (297)
T ss_dssp             EEEEET--TSEEEEEEBCSSSC-BCCEEE-ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred             EEEEEC--CCcEEEEEecCCCc-eeeeee-ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence            998888  99999999984311 113344 689999999999997             5689999 99999999998333


Q ss_pred             c---eeeEeecCCCCcCCCCcceEEEEEcCCC--CcEEEEEeCCCeEEEEEccccccccccceee--cccccccCCccce
Q 014005          251 Q---CFNIVDMKPSNMDDLTEVITSAEFHPIY--CNLLAYSSSRGFVRLVDMRQSALCDHSARIL--RDAAESHGSKSFF  323 (432)
Q Consensus       251 ~---~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~h~~~~~~~~~~  323 (432)
                      .   ....+       .+|...|++++|+|++  .++||+++.|++|++||+++..... ....+  ..|          
T Consensus       192 ~~~~~~~~l-------~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~-~~~~~~~~~~----------  253 (297)
T 2pm7_B          192 QTYVLESTL-------EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW-KKTLLKEEKF----------  253 (297)
T ss_dssp             TEEEEEEEE-------CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC-EEEESSSSCC----------
T ss_pred             ceEEEEEEe-------cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcc-ceeeeecccC----------
Confidence            2   23333       7899999999999984  3899999999999999998643110 01222  233          


Q ss_pred             eeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005          324 TEIIASISDIKFANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       324 ~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~  355 (432)
                         ...|.+++|+|+|++||+++ |+.|++|+.
T Consensus       254 ---~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          254 ---PDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             ---SSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             ---CCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence               57899999999999999974 599999998

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8.4e-37  Score=282.15  Aligned_cols=248  Identities=13%  Similarity=0.157  Sum_probs=212.8

Q ss_pred             CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      |.+.|++++|+|+|++|++|+.|+.|++||+++++                         .+....+.+|.         
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-------------------------~~~~~~~~~h~---------   52 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-------------------------WVQVHELKEHN---------   52 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-------------------------EEEEEEEECCS---------
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-------------------------EEeeeeecCCC---------
Confidence            78899999999999999999999999999998864                         12446788998         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                         ..|.+++|  +|++++|++++.||.|++||+.+++.........+.           ..+.+++|++++.++++++.
T Consensus        53 ---~~v~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~  116 (372)
T 1k8k_C           53 ---GQVTGVDW--APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN-----------RAARCVRWAPNEKKFAVGSG  116 (372)
T ss_dssp             ---SCEEEEEE--ETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS-----------SCEEEEEECTTSSEEEEEET
T ss_pred             ---CcccEEEE--eCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCC-----------CceeEEEECCCCCEEEEEeC
Confidence               99999999  889999999999999999999888755554444444           78999999999999999988


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCC-----------------CCce
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI-----------------SDQC  252 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~-----------------~~~~  252 (432)
                        ++.+++||++..........+...|...|.+++|+|++++++++ .|+.|++||++.                 .+..
T Consensus       117 --d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  194 (372)
T 1k8k_C          117 --SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL  194 (372)
T ss_dssp             --TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred             --CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhh
Confidence              99999999985433333444436789999999999999999999 999999999641                 2344


Q ss_pred             eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeE
Q 014005          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (432)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  332 (432)
                      +..+       ..|...|++++|+|++ ++|++++.||.|++||+++++.    +..+..|             ...|.+
T Consensus       195 ~~~~-------~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~-------------~~~v~~  249 (372)
T 1k8k_C          195 MFES-------SSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMA----VATLASE-------------TLPLLA  249 (372)
T ss_dssp             EEEC-------CCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTE----EEEEECS-------------SCCEEE
T ss_pred             eEec-------CCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCce----eEEEccC-------------CCCeEE
Confidence            4443       6888999999999999 9999999999999999998876    6777776             679999


Q ss_pred             EEEcCCCCEEEEeeCCeEEEEec
Q 014005          333 IKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       333 ~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                      ++|+|+|++|++|.++.|++||+
T Consensus       250 ~~~~~~~~~l~~~~d~~i~i~~~  272 (372)
T 1k8k_C          250 VTFITESSLVAAGHDCFPVLFTY  272 (372)
T ss_dssp             EEEEETTEEEEEETTSSCEEEEE
T ss_pred             EEEecCCCEEEEEeCCeEEEEEc
Confidence            99999999999997799999999

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7.1e-36  Score=272.45  Aligned_cols=295  Identities=13%  Similarity=0.076  Sum_probs=226.7

Q ss_pred             cccCCCcEEEEEEcCC-CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~-g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      ..+|++.|++|+|+|+ +++||||+.|++|+|||+...+..                      ...+...+.+|.     
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------------~~~~~~~l~~h~-----   86 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------------------YGIPQRALRGHS-----   86 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC----------------------SEEEEEEECCCS-----
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----------------------cceeeEEEeCCC-----
Confidence            3469999999999997 689999999999999999876532                      223456788999     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                             ..|.+++|  +|++++|++++.|+.|++|+.............  .           ..+....+++.+.+++
T Consensus        87 -------~~V~~~~~--s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~l~  144 (340)
T 4aow_A           87 -------HFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH--T-----------KDVLSVAFSSDNRQIV  144 (340)
T ss_dssp             -------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC--S-----------SCEEEEEECTTSSCEE
T ss_pred             -------CCEEEEEE--CCCCCEEEEEcccccceEEeecccceeeeecCC--C-----------CceeEEEEeecCccce
Confidence                   99999999  899999999999999999999877644333222  2           4566778889999999


Q ss_pred             cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC--CEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (432)
                      +++.  |+.+++||...   .........+|...+..++|++++  ..++++ .|+.|++||++ ..+....+       
T Consensus       145 s~s~--d~~~~~~d~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-~~~~~~~~-------  211 (340)
T 4aow_A          145 SGSR--DKTIKLWNTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA-NCKLKTNH-------  211 (340)
T ss_dssp             EEET--TSCEEEECTTS---CEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TTEEEEEE-------
T ss_pred             eecC--CCeEEEEEeCC---CceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC-CCceeeEe-------
Confidence            9988  99999999873   333333236889999999998864  467777 99999999999 66666665       


Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  343 (432)
                      .+|...|++++|+|++ ++|++|+.||.|++||+++++.    +..+..              ...|..+.|+|++.+++
T Consensus       212 ~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~----~~~~~~--------------~~~v~~~~~~~~~~~~~  272 (340)
T 4aow_A          212 IGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKH----LYTLDG--------------GDIINALCFSPNRYWLC  272 (340)
T ss_dssp             CCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEE----EEEEEC--------------SSCEEEEEECSSSSEEE
T ss_pred             cCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCce----eeeecC--------------CceEEeeecCCCCceee
Confidence            7899999999999999 9999999999999999998775    566666              36899999999998888


Q ss_pred             EeeCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          344 SRDYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       344 s~~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      ++.++.|++||+   ..+..+..+..  ..........+..+.......++++|+.||.|++|+.
T Consensus       273 ~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~  335 (340)
T 4aow_A          273 AATGPSIKIWDLEGKIIVDELKQEVI--STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV  335 (340)
T ss_dssp             EEETTEEEEEETTTTEEEEEECCC---------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             ccCCCEEEEEECCCCeEEEeccccce--eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence            888899999999   23333332211  0000001112222222222236899999999999993

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.4e-37  Score=278.46  Aligned_cols=265  Identities=17%  Similarity=0.256  Sum_probs=218.2

Q ss_pred             hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005            6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS   85 (432)
Q Consensus         6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (432)
                      ..+.....|+....   ........|...|.+++|+|+|++|++|+.|+.|++|++.+...                   
T Consensus        74 s~Dg~v~iWd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~-------------------  131 (340)
T 1got_B           74 SQDGKLIIWDSYTT---NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG-------------------  131 (340)
T ss_dssp             ETTTEEEEEETTTC---CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB-------------------
T ss_pred             eCCCcEEEEECCCC---CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC-------------------
Confidence            44455666765421   11122335788999999999999999999999999999877532                   


Q ss_pred             cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005           86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN  165 (432)
Q Consensus        86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  165 (432)
                          .......+.+|.            ..|.++.|  ++++ .+++++.|+.|++||+.+++..  ..+..|.      
T Consensus       132 ----~~~~~~~~~~h~------------~~v~~~~~--~~~~-~l~s~s~d~~i~~wd~~~~~~~--~~~~~h~------  184 (340)
T 1got_B          132 ----NVRVSRELAGHT------------GYLSCCRF--LDDN-QIVTSSGDTTCALWDIETGQQT--TTFTGHT------  184 (340)
T ss_dssp             ----SCEEEEEEECCS------------SCEEEEEE--EETT-EEEEEETTSCEEEEETTTTEEE--EEECCCS------
T ss_pred             ----cceeEEEecCCC------------ccEEEEEE--CCCC-cEEEEECCCcEEEEECCCCcEE--EEEcCCC------
Confidence                123446788999            99999999  5565 5899999999999999988743  3344455      


Q ss_pred             ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEE
Q 014005          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW  244 (432)
Q Consensus       166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lw  244 (432)
                           +.|.+++|+|++.++++++.  |+.|++||++   ...+...+ .+|...|++++|+|++++|++| .|++|++|
T Consensus       185 -----~~v~~~~~~~~~~~l~sg~~--d~~v~~wd~~---~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iw  253 (340)
T 1got_B          185 -----GDVMSLSLAPDTRLFVSGAC--DASAKLWDVR---EGMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLF  253 (340)
T ss_dssp             -----SCEEEEEECTTSSEEEEEET--TSCEEEEETT---TCSEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             -----CceEEEEECCCCCEEEEEeC--CCcEEEEECC---CCeeEEEE-cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence                 78999999999999999998  9999999998   67788888 8999999999999999999999 99999999


Q ss_pred             eCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcccee
Q 014005          245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (432)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~  324 (432)
                      |++ .++.+..+     ....+...|++++|+|++ ++|++|+.||.|++||+.+++.    ...+.+|           
T Consensus       254 d~~-~~~~~~~~-----~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~----~~~~~~h-----------  311 (340)
T 1got_B          254 DLR-ADQELMTY-----SHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADR----AGVLAGH-----------  311 (340)
T ss_dssp             ETT-TTEEEEEE-----CCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE----EEEEECC-----------
T ss_pred             ECC-CCcEEEEE-----ccCCcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCcE----eeEeecC-----------
Confidence            999 55555544     123444579999999999 9999999999999999998775    5788887           


Q ss_pred             eeecceeEEEEcCCCCEEEEee-CCeEEEEe
Q 014005          325 EIIASISDIKFANDGQHLLSRD-YMNLKVFR  354 (432)
Q Consensus       325 ~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd  354 (432)
                        ...|.+++|+|+|++|++|+ |++|++||
T Consensus       312 --~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          312 --DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             --SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             --CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence              78999999999999999985 49999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.7e-36  Score=294.58  Aligned_cols=301  Identities=13%  Similarity=0.125  Sum_probs=227.4

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ..+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.                         .....+.+|.      
T Consensus        55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~-------------------------~~~~~~~~~~------  103 (611)
T 1nr0_A           55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-------------------------ILKTTIPVFS------  103 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC-------------------------CEEEEEECSS------
T ss_pred             ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc-------------------------eeeEeecccC------
Confidence            347999999999999999999999999999999876432                         1335778898      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCC----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  183 (432)
                            ..|.+++|  +|++++|++++.+    +.|++||..  .  ....+..|.           ..|.+++|+|++.
T Consensus       104 ------~~v~~v~f--s~dg~~l~~~~~~~~~~~~v~~wd~~--~--~~~~l~gh~-----------~~v~~v~f~p~~~  160 (611)
T 1nr0_A          104 ------GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDTG--T--SNGNLTGQA-----------RAMNSVDFKPSRP  160 (611)
T ss_dssp             ------SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTTC--C--BCBCCCCCS-----------SCEEEEEECSSSS
T ss_pred             ------CceEEEEE--CCCCCEEEEEECCCCceeEEEEeeCC--C--CcceecCCC-----------CCceEEEECCCCC
Confidence                  99999999  9999999998765    478888843  2  222344555           7899999999987


Q ss_pred             c-eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC
Q 014005          184 H-GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (432)
Q Consensus       184 ~-~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~  261 (432)
                      + +++++.  |+.+++||..   ..++...+ .+|...|.+++|+|++++|++| .|++|++||+. .++....+.....
T Consensus       161 ~~l~s~s~--D~~v~lwd~~---~~~~~~~l-~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~-~g~~~~~~~~~~~  233 (611)
T 1nr0_A          161 FRIISGSD--DNTVAIFEGP---PFKFKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV-DGTKTGVFEDDSL  233 (611)
T ss_dssp             CEEEEEET--TSCEEEEETT---TBEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEECBCTTS
T ss_pred             eEEEEEeC--CCeEEEEECC---CCeEeeee-ccccCceEEEEECCCCCEEEEEECCCcEEEEECC-CCcEeeeeccccc
Confidence            4 888888  9999999987   67788888 8999999999999999999999 99999999998 5666655411111


Q ss_pred             CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccc--------------------------
Q 014005          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE--------------------------  315 (432)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~--------------------------  315 (432)
                      ...+|...|.+++|+|++ ++|++++.|++|++||+++++.    ...+..+..                          
T Consensus       234 ~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~  308 (611)
T 1nr0_A          234 KNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKV----EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF  308 (611)
T ss_dssp             SSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE----EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEE
T ss_pred             cccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCce----eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEE
Confidence            223799999999999999 9999999999999999998764    233322100                          


Q ss_pred             ----ccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEecC---cceeE-eecceeeeehhhhhcccccccccce
Q 014005          316 ----SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRYE---PVMTL-SFCGIYVWILRQLQHSRFMSIYALS  386 (432)
Q Consensus       316 ----~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  386 (432)
                          .......+.+|...|.+++|+|||++|++++ |++|++||+.   ....+ ..|..           .+..+....
T Consensus       309 ~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~-----------~v~~~~~s~  377 (611)
T 1nr0_A          309 VNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT-----------MITGIKTTS  377 (611)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSS-----------CEEEEEECT
T ss_pred             EeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcc-----------eEEEEEECC
Confidence                0000122345688999999999999999985 4999999992   22211 11221           111111111


Q ss_pred             eeEEEEeecccceeeeeccC
Q 014005          387 CVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       387 ~~~~~~~g~~~~~i~~~~~~  406 (432)
                      . ..+++++.|+.+++|+..
T Consensus       378 ~-~~l~s~s~d~~v~~w~~~  396 (611)
T 1nr0_A          378 K-GDLFTVSWDDHLKVVPAG  396 (611)
T ss_dssp             T-SCEEEEETTTEEEEECSS
T ss_pred             C-CcEEEEEcCCceEEeecC
Confidence            1 147789999999999944

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.2e-37  Score=277.78  Aligned_cols=254  Identities=16%  Similarity=0.213  Sum_probs=201.6

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|.+.|++++|+|+|++||+|+.|++|+|||+.++..                         .....+.+|.       
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-------------------------~~~~~l~gH~-------   57 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-------------------------ILIADLRGHE-------   57 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-------------------------EEEEEEECCS-------
T ss_pred             ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-------------------------EEEEEEcCCC-------
Confidence            36899999999999999999999999999999987531                         2346788999       


Q ss_pred             hhhhhcceeEEEEEEcC--CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC--Ccc
Q 014005          109 SLEIEEKINRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS--FAH  184 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~  184 (432)
                           ..|.+++|  ++  ++++|++|+.|++|++||+.++.......+..|.           ..|.+++|+|+  +.+
T Consensus        58 -----~~V~~v~~--~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~-----------~~V~~v~~~p~~~g~~  119 (316)
T 3bg1_A           58 -----GPVWQVAW--AHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD-----------SSVNSVCWAPHDYGLI  119 (316)
T ss_dssp             -----SCEEEEEE--CCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCS-----------SCCCEEEECCTTTCSC
T ss_pred             -----ccEEEEEe--CCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCC-----------CceEEEEECCCCCCcE
Confidence                 99999999  54  4889999999999999999887644555555555           78999999998  778


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-----------------CCEEEEE-cCCeEEEEeC
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-----------------CETFVSA-DDLRINLWNL  246 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------------~~~l~~~-~d~~i~lwd~  246 (432)
                      +++++.  |+.+++||++..........+ .+|...+.+++|+|+                 +++|++| .|++|++||+
T Consensus       120 lasgs~--D~~i~lwd~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~  196 (316)
T 3bg1_A          120 LACGSS--DGAISLLTYTGEGQWEVKKIN-NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKE  196 (316)
T ss_dssp             EEEECS--SSCEEEEEECSSSCEEECCBT-TSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEE
T ss_pred             EEEEcC--CCCEEEEecCCCCCcceeeee-ccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEe
Confidence            999988  999999999843222223444 689999999999997                 4689999 9999999999


Q ss_pred             CCCC--ceeeEeecCCCCcCCCCcceEEEEEcCCC---CcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcc
Q 014005          247 EISD--QCFNIVDMKPSNMDDLTEVITSAEFHPIY---CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS  321 (432)
Q Consensus       247 ~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~  321 (432)
                      +..+  ....       .+.+|...|++++|+|++   .++|++|+.||+|++||+++..........+..|        
T Consensus       197 ~~~~~~~~~~-------~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~--------  261 (316)
T 3bg1_A          197 EEDGQWKEEQ-------KLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF--------  261 (316)
T ss_dssp             CTTSCEEEEE-------CCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC--------
T ss_pred             CCCCccceee-------ecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC--------
Confidence            7322  2333       347899999999999985   2689999999999999998632100002344454        


Q ss_pred             ceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          322 FFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       322 ~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                           ...|.+++|+|+|++||++ .|++|++|+.
T Consensus       262 -----~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          262 -----NDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             -----SSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             -----CCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence                 6799999999999999997 4599999998

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.3e-36  Score=294.01  Aligned_cols=274  Identities=18%  Similarity=0.236  Sum_probs=229.2

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|.+.|++++|+|++++|++++.|++|++||.+...                            ...+.+|.       
T Consensus       300 ~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~----------------------------~~~~~~~~-------  344 (577)
T 2ymu_A          300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH----------------------------LQTLTGHS-------  344 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE----------------------------EEEECCCS-------
T ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe----------------------------eEEEeCCC-------
Confidence            4688999999999999999999999999999976543                            24677888       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           ..|.+++|  +|+++++++++.|+.|++||........+   ..+.           ..|.+++|+|++.+++++
T Consensus       345 -----~~v~~~~~--s~~g~~l~~~~~dg~v~~~~~~~~~~~~~---~~~~-----------~~v~~~~~s~dg~~l~~~  403 (577)
T 2ymu_A          345 -----SSVWGVAF--SPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHS-----------SSVRGVAFSPDGQTIASA  403 (577)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTCCEEEEE---ECCS-----------SCEEEEEECTTSSCEEEE
T ss_pred             -----CCEEEEEE--CCCCCEEEEEeCCCEEEEEcCCCCEEEEe---cCCC-----------CCeEEEEECCCCCEEEEE
Confidence                 89999999  89999999999999999999754433332   3333           789999999999999999


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      +.  |+.|++||.    ..+.++.+ .+|...|.+++|+|++++++++ .|+.|++||..  ++.+..+       .+|.
T Consensus       404 ~~--d~~v~~~~~----~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~-------~~~~  467 (577)
T 2ymu_A          404 SD--DKTVKLWNR----NGQLLQTL-TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQLLQTL-------TGHS  467 (577)
T ss_dssp             ET--TSEEEEECT----TCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SCEEEEE-------ECCS
T ss_pred             eC--CCEEEEEeC----CCCEEEEe-cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CCEEEEE-------cCCC
Confidence            88  999999996    34566777 7899999999999999999999 99999999976  5566655       7899


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~  347 (432)
                      ..|++++|+|++ ++|++++.|+.|++||.. ++.    ++.+.+|             ...|++++|+|||++|+++++
T Consensus       468 ~~v~~~~~spd~-~~las~~~d~~i~iw~~~-~~~----~~~~~~h-------------~~~v~~l~~s~dg~~l~s~~~  528 (577)
T 2ymu_A          468 SSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQL----LQTLTGH-------------SSSVRGVAFSPDGQTIASASD  528 (577)
T ss_dssp             SCEEEEEECTTS-CEEEEEETTSEEEEEETT-SCE----EEEEECC-------------SSCEEEEEECTTSSCEEEEET
T ss_pred             CCEEEEEEcCCC-CEEEEEeCCCEEEEEcCC-CCE----EEEEeCC-------------CCCEEEEEEcCCCCEEEEEEC
Confidence            999999999999 999999999999999964 554    5788887             789999999999999999755


Q ss_pred             -CeEEEEec--CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          348 -MNLKVFRY--EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       348 -~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                       +.|++||.  +++..+..|...           +..+.+....-++++|+.|+.|++||
T Consensus       529 dg~v~lwd~~~~~~~~~~~h~~~-----------v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          529 DKTVKLWNRNGQLLQTLTGHSSS-----------VWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             TSEEEEECTTSCEEEEEECCSSC-----------EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cCEEEEEeCCCCEEEEEcCCCCC-----------EEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence             99999999  777888877642           22211111222578999999999997

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.9e-36  Score=273.69  Aligned_cols=277  Identities=13%  Similarity=0.240  Sum_probs=214.0

Q ss_pred             hhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc
Q 014005            5 REEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT   84 (432)
Q Consensus         5 ~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   84 (432)
                      +..+.....|++..-...........|.+.|++++|+|+|++||+|+.|++|+||+.+.+.                   
T Consensus        34 ~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~-------------------   94 (345)
T 3fm0_A           34 CGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD-------------------   94 (345)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC--------------------
T ss_pred             EcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC-------------------
Confidence            3445556677654310000011124689999999999999999999999999999987753                   


Q ss_pred             ccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCcccc
Q 014005           85 STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSS  163 (432)
Q Consensus        85 ~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~  163 (432)
                            ..+...+.+|.            ..|.+++|  +|++++|++|+.|+.|++||+..+. ...+..+..|.    
T Consensus        95 ------~~~~~~~~~h~------------~~v~~v~~--sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~----  150 (345)
T 3fm0_A           95 ------FECVTTLEGHE------------NEVKSVAW--APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT----  150 (345)
T ss_dssp             ------EEEEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCC----
T ss_pred             ------eEEEEEccCCC------------CCceEEEE--eCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcC----
Confidence                  23557889999            99999999  8999999999999999999998764 23344445555    


Q ss_pred             ccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEE
Q 014005          164 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRIN  242 (432)
Q Consensus       164 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~  242 (432)
                             ..|.+++|+|++.++++++.  |+.+++||.+.. ...+...+ .+|...|.+++|+|++++|+++ .|++|+
T Consensus       151 -------~~v~~~~~~p~~~~l~s~s~--d~~i~~w~~~~~-~~~~~~~~-~~h~~~v~~l~~sp~g~~l~s~s~D~~v~  219 (345)
T 3fm0_A          151 -------QDVKHVVWHPSQELLASASY--DDTVKLYREEED-DWVCCATL-EGHESTVWSLAFDPSGQRLASCSDDRTVR  219 (345)
T ss_dssp             -------SCEEEEEECSSSSCEEEEET--TSCEEEEEEETT-EEEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             -------CCeEEEEECCCCCEEEEEeC--CCcEEEEEecCC-CEEEEEEe-cCCCCceEEEEECCCCCEEEEEeCCCeEE
Confidence                   78999999999999999998  999999998732 22455666 7999999999999999999999 999999


Q ss_pred             EEeCCCCCc--------------eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccc-
Q 014005          243 LWNLEISDQ--------------CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-  307 (432)
Q Consensus       243 lwd~~~~~~--------------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-  307 (432)
                      +||....+.              ++..+      ...|...|.+++|+|++ ..|++++.|+.|++|+...+....... 
T Consensus       220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~  292 (345)
T 3fm0_A          220 IWRQYLPGNEQGVACSGSDPSWKCICTL------SGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTF  292 (345)
T ss_dssp             EEEEECTTCTTCCCCC---CEEEEEEEE------CSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTSCTTSCCE
T ss_pred             EeccccCCCCccceeeccCCccceeEEe------cCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCCCcceeeE
Confidence            999742221              11111      12388899999999999 899999999999999987653211111 


Q ss_pred             ----eeecccccccCCccceeeeecceeEEEEcCCC-CEEEEee-CCeEEEEec
Q 014005          308 ----RILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       308 ----~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~s~~-~~~i~iwd~  355 (432)
                          ....+|             ...|.+++|+|++ .+||+|+ ||+|++|++
T Consensus       293 ~~~~~~~~~h-------------~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~  333 (345)
T 3fm0_A          293 SLTAHLHQAH-------------SQDVNCVAWNPKEPGLLASCSDDGEVAFWKY  333 (345)
T ss_dssp             EEEEEETTSS-------------SSCEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred             EEEeeecccc-------------cCcEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence                122344             7899999999998 4899975 599999999

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.7e-36  Score=295.19  Aligned_cols=248  Identities=12%  Similarity=0.148  Sum_probs=205.3

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .+.+.+.+++|+|+|++||+++ ++.|+||++.+++..                           ..+.+|.        
T Consensus        16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~---------------------------~~~~~h~--------   59 (611)
T 1nr0_A           16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDT---------------------------EIYTEHS--------   59 (611)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCC---------------------------EEECCCS--------
T ss_pred             cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccC---------------------------eEecCCC--------
Confidence            4467888999999999999987 569999999876533                           6788999        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                          ..|++++|  +|+|++|++|+.|++|+|||+.+++......+..+.           +.|.+++|+|++..+++++
T Consensus        60 ----~~v~~~~~--spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~-----------~~v~~v~fs~dg~~l~~~~  122 (611)
T 1nr0_A           60 ----HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS-----------GPVKDISWDSESKRIAAVG  122 (611)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS-----------SCEEEEEECTTSCEEEEEE
T ss_pred             ----CceEEEEE--CCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccC-----------CceEEEEECCCCCEEEEEE
Confidence                99999999  999999999999999999999765433333344444           7899999999999998877


Q ss_pred             eec--cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          190 WTE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       190 ~~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      ...  .+.+++||..     .+...+ .+|...|++++|+|++. .|++| .|++|++||.+ ..+....+       .+
T Consensus       123 ~~~~~~~~v~~wd~~-----~~~~~l-~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~-~~~~~~~l-------~~  188 (611)
T 1nr0_A          123 EGRERFGHVFLFDTG-----TSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-PFKFKSTF-------GE  188 (611)
T ss_dssp             CCSSCSEEEEETTTC-----CBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT-TBEEEEEE-------CC
T ss_pred             CCCCceeEEEEeeCC-----CCccee-cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC-CCeEeeee-------cc
Confidence            522  2578888853     344456 78999999999999987 58888 99999999998 56666665       89


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeec-------ccccccCCccceeeeecceeEEEEcCC
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR-------DAAESHGSKSFFTEIIASISDIKFAND  338 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~h~~~~~~~~~~~~~~~~v~~~~~s~d  338 (432)
                      |...|++++|+|++ ++|++|+.|++|++||+++++.    ...+.       +|             ...|.+++|+||
T Consensus       189 H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~----~~~~~~~~~~~~~h-------------~~~V~~v~~spd  250 (611)
T 1nr0_A          189 HTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTK----TGVFEDDSLKNVAH-------------SGSVFGLTWSPD  250 (611)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE----EEECBCTTSSSCSS-------------SSCEEEEEECTT
T ss_pred             ccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCcE----eeeecccccccccc-------------CCCEEEEEECCC
Confidence            99999999999999 9999999999999999998775    35553       44             789999999999


Q ss_pred             CCEEEEee-CCeEEEEec---CcceeEe
Q 014005          339 GQHLLSRD-YMNLKVFRY---EPVMTLS  362 (432)
Q Consensus       339 g~~l~s~~-~~~i~iwd~---~~~~~~~  362 (432)
                      |++|++++ |++|++||+   +.+.++.
T Consensus       251 g~~l~s~s~D~~v~lWd~~~~~~~~~~~  278 (611)
T 1nr0_A          251 GTKIASASADKTIKIWNVATLKVEKTIP  278 (611)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeeec
Confidence            99999975 499999999   4444443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.1e-36  Score=299.58  Aligned_cols=298  Identities=14%  Similarity=0.119  Sum_probs=228.2

Q ss_pred             cccCCCcEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           28 ELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      ...|.+.|++++|+|++ ++|++|+.|++|+||++......                      .......+.+|.     
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------------~~~~~~~~~~h~-----  430 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------------YGVAQRRLTGHS-----  430 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------------SCEEEEEEECCS-----
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------------cccccceecCCC-----
Confidence            34799999999999875 79999999999999999765321                      122345788999     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                             ..|.+++|  +|++++|++|+.|++|++||+.++....  .+..|.           ..|.+++|+|++.+++
T Consensus       431 -------~~v~~v~~--s~~g~~l~sgs~Dg~v~vwd~~~~~~~~--~~~~h~-----------~~v~~~~~s~~~~~l~  488 (694)
T 3dm0_A          431 -------HFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTR--RFVGHT-----------KDVLSVAFSLDNRQIV  488 (694)
T ss_dssp             -------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEE--EEECCS-----------SCEEEEEECTTSSCEE
T ss_pred             -------CcEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCccee--EEeCCC-----------CCEEEEEEeCCCCEEE
Confidence                   99999999  8999999999999999999999876432  334455           7899999999999999


Q ss_pred             cceeeccceEEEEeecccccceeeEEe--ecCCCCCeeEEEeCCCC--CEEEEE-cCCeEEEEeCCCCCceeeEeecCCC
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVY--PHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~--~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~  261 (432)
                      +++.  |+.|++||...   .......  ..+|...|.+++|+|++  ..++++ .|++|++||++ ..+....+     
T Consensus       489 s~s~--D~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~-~~~~~~~~-----  557 (694)
T 3dm0_A          489 SASR--DRTIKLWNTLG---ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS-NCKLRSTL-----  557 (694)
T ss_dssp             EEET--TSCEEEECTTS---CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TCCEEEEE-----
T ss_pred             EEeC--CCEEEEEECCC---CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC-CCcEEEEE-----
Confidence            9998  99999999863   2222211  14688899999999986  578888 99999999999 56666655     


Q ss_pred             CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (432)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~  341 (432)
                        .+|...|++++|+|++ ++|++|+.||.|++||+++++.    +..+..              ...|.+++|+|++.+
T Consensus       558 --~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~----~~~~~~--------------~~~v~~~~~sp~~~~  616 (694)
T 3dm0_A          558 --AGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKK----LYSLEA--------------NSVIHALCFSPNRYW  616 (694)
T ss_dssp             --CCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEE----EECCBC--------------SSCEEEEEECSSSSE
T ss_pred             --cCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCce----EEEecC--------------CCcEEEEEEcCCCcE
Confidence              8899999999999999 9999999999999999998875    455555              367999999999999


Q ss_pred             EEEeeCCeEEEEec---CcceeEeecceeeeeh------hhhhcc--cccccccceeeEEEEeecccceeeeeccC
Q 014005          342 LLSRDYMNLKVFRY---EPVMTLSFCGIYVWIL------RQLQHS--RFMSIYALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       342 l~s~~~~~i~iwd~---~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                      |+++.++.|++||+   ..+..+..+.......      ......  ....+..+....++++|+.||.|++|+.+
T Consensus       617 l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          617 LCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            99998888999999   3444444332100000      000000  00111112222368999999999999853

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.3e-37  Score=284.89  Aligned_cols=253  Identities=11%  Similarity=0.106  Sum_probs=198.8

Q ss_pred             CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      +.+.|++++|+|+|++||+|+.|+.|+|||+.++.                         .+....+.+|.         
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-------------------------~~~~~~~~~h~---------   55 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-------------------------WKHARTFSDHD---------   55 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-------------------------EEECCCBCCCS---------
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-------------------------eEEEEEEecCC---------
Confidence            45689999999999999999999999999998762                         12346788898         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                         ..|.+++|  +|++++|++++.|+.|++||+.++. .........+.           ..+.+++|+|++.++++++
T Consensus        56 ---~~v~~~~~--s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~  119 (377)
T 3dwl_C           56 ---KIVTCVDW--APKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN-----------RAATFVRWSPNEDKFAVGS  119 (377)
T ss_dssp             ---SCEEEEEE--CTTTCCEEEEETTSSEEEC------CCCCEEECCCCS-----------SCEEEEECCTTSSCCEEEE
T ss_pred             ---ceEEEEEE--eCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccC-----------CceEEEEECCCCCEEEEEe
Confidence               99999999  8999999999999999999998876 33444444455           7899999999999999999


Q ss_pred             eeccceEEEEeecccccceeeEEeecC-CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCc--------------ee
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--------------CF  253 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~--------------~~  253 (432)
                      .  ++.+++||++......+.+.+ .. |...|.+++|+|++++++++ .|+.|++||++....              ..
T Consensus       120 ~--d~~i~iwd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  196 (377)
T 3dwl_C          120 G--ARVISVCYFEQENDWWVSKHL-KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFN  196 (377)
T ss_dssp             S--SSCEEECCC-----CCCCEEE-CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEE
T ss_pred             c--CCeEEEEEECCcccceeeeEe-ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchh
Confidence            8  999999999844322346666 45 99999999999999999999 999999999862110              01


Q ss_pred             eEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEE
Q 014005          254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  333 (432)
Q Consensus       254 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~  333 (432)
                      ...    ..+ +|...|++++|+|++ ++|++++.||.|++||+++++.....+..+.+|             ...|.++
T Consensus       197 ~~~----~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------------~~~v~~~  257 (377)
T 3dwl_C          197 TVC----AEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLS-------------QLPLRSL  257 (377)
T ss_dssp             EEE----ECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECS-------------SSCEEEE
T ss_pred             hhh----hcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCC-------------CCceEEE
Confidence            111    123 888999999999999 999999999999999999877522223566666             7889999


Q ss_pred             EEcCCCCEEEEeeCCeEEEEec
Q 014005          334 KFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       334 ~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                      +|+|+|++|++|+++.+.+|+.
T Consensus       258 ~~s~~~~~l~~~~~~~~~~~~~  279 (377)
T 3dwl_C          258 LWANESAIVAAGYNYSPILLQG  279 (377)
T ss_dssp             EEEETTEEEEEESSSSEEEECC
T ss_pred             EEcCCCCEEEEEcCCcEEEEEe
Confidence            9999999999998866668877

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.7e-36  Score=268.39  Aligned_cols=265  Identities=16%  Similarity=0.234  Sum_probs=218.0

Q ss_pred             chhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccc
Q 014005            4 NREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF   83 (432)
Q Consensus         4 ~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   83 (432)
                      .+..+.....|++....   .......|...|.+++|+|++++|++|+.|++|++||+++++                  
T Consensus        30 s~~~dg~v~lWd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~------------------   88 (304)
T 2ynn_A           30 TTLYSGRVELWNYETQV---EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE------------------   88 (304)
T ss_dssp             EEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC------------------
T ss_pred             EEcCCCcEEEEECCCCc---eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc------------------
Confidence            33445566778765321   112233578899999999999999999999999999998876                  


Q ss_pred             cccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccc
Q 014005           84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS  163 (432)
Q Consensus        84 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  163 (432)
                               .+..+.+|.            ..|.+++|  +|++++|++|+.|++|++||+.++.. ....+..|.    
T Consensus        89 ---------~~~~~~~h~------------~~v~~~~~--~~~~~~l~sgs~D~~v~lWd~~~~~~-~~~~~~~h~----  140 (304)
T 2ynn_A           89 ---------KVVDFEAHP------------DYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWA-LEQTFEGHE----  140 (304)
T ss_dssp             ---------EEEEEECCS------------SCEEEEEE--CSSSSEEEEEETTSCEEEEEGGGTTE-EEEEECCCC----
T ss_pred             ---------EEEEEeCCC------------CcEEEEEE--cCCCCEEEEECCCCeEEEEECCCCcc-hhhhhcccC----
Confidence                     346789999            99999999  89999999999999999999987642 122234444    


Q ss_pred             ccccccccccccccCCC-CCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC--CCCEEEEE-cCC
Q 014005          164 ENTLLAEKNFMNEHNPP-SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDL  239 (432)
Q Consensus       164 ~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~-~d~  239 (432)
                             ..|.+++|+| ++..+++++.  |+.|++||++   ...+...+..+|...+..+.++|  +++++++| .|+
T Consensus       141 -------~~v~~v~~~p~~~~~l~sgs~--D~~v~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~  208 (304)
T 2ynn_A          141 -------HFVMCVAFNPKDPSTFASGCL--DRTVKVWSLG---QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL  208 (304)
T ss_dssp             -------SCEEEEEECTTCTTEEEEEET--TSEEEEEETT---CSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS
T ss_pred             -------CcEEEEEECCCCCCEEEEEeC--CCeEEEEECC---CCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC
Confidence                   7899999999 5788999988  9999999997   44444444356778899999987  67899999 999


Q ss_pred             eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCC
Q 014005          240 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS  319 (432)
Q Consensus       240 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~  319 (432)
                      +|++||++ .++++..+       .+|...|.+++|+|++ ++|++|+.||.|++||+++++.    .+.+..|      
T Consensus       209 ~i~iWd~~-~~~~~~~~-------~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~~----~~~~~~~------  269 (304)
T 2ynn_A          209 TIKIWDYQ-TKSCVATL-------EGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKV----EKTLNVG------  269 (304)
T ss_dssp             EEEEEETT-TTEEEEEE-------ECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCE----EEEECCS------
T ss_pred             eEEEEeCC-CCccceee-------CCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCce----eeeccCC------
Confidence            99999999 67777766       8999999999999999 9999999999999999998876    6788776      


Q ss_pred             ccceeeeecceeEEEEcCCCC--EEEEeeCCeEEEEec
Q 014005          320 KSFFTEIIASISDIKFANDGQ--HLLSRDYMNLKVFRY  355 (432)
Q Consensus       320 ~~~~~~~~~~v~~~~~s~dg~--~l~s~~~~~i~iwd~  355 (432)
                             ...+.+++|+|+|.  ++++|.++.+.+|++
T Consensus       270 -------~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~  300 (304)
T 2ynn_A          270 -------LERSWCIATHPTGRKNYIASGFDNGFTVLSL  300 (304)
T ss_dssp             -------SSSEEEEEECTTCGGGCEEEEETTEEEEEEC
T ss_pred             -------CccEEEEEECCCCCceEEEEecCCceEEEEe
Confidence                   67899999999875  688998888888887

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6e-35  Score=265.78  Aligned_cols=282  Identities=15%  Similarity=0.188  Sum_probs=226.2

Q ss_pred             ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee--cCCccc
Q 014005           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEF  104 (432)
Q Consensus        27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~h~~~~  104 (432)
                      ....|.+.|++++|+|++++|++++ ||.|++|++++++..                        .....+.  +|.   
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~------------------------~~~~~~~~~~~~---   97 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK------------------------SPVSQLDCLNRD---   97 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC------------------------SCSEEEECSCTT---
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce------------------------eeeecccccCCC---
Confidence            3457899999999999999999999 999999999876532                        1112333  677   


Q ss_pred             cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                               ..|.+++|  +|+++++++++.|+.|++||+.+++.........+.           ..+.+++|+|++.+
T Consensus        98 ---------~~v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~  155 (337)
T 1gxr_A           98 ---------NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA-----------PACYALAISPDSKV  155 (337)
T ss_dssp             ---------SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS-----------SCEEEEEECTTSSE
T ss_pred             ---------CcEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCC-----------CceEEEEECCCCCE
Confidence                     89999999  899999999999999999999987744444444444           67899999999999


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (432)
                      +++++.  ++.+++||++   ..+....+ ..|...+.+++|+|+++.++++ .|+.|++||++ .++....+       
T Consensus       156 l~~~~~--dg~v~~~d~~---~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~~-------  221 (337)
T 1gxr_A          156 CFSCCS--DGNIAVWDLH---NQTLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR-EGRQLQQH-------  221 (337)
T ss_dssp             EEEEET--TSCEEEEETT---TTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEE-------
T ss_pred             EEEEeC--CCcEEEEeCC---CCceeeee-ecccCceEEEEECCCCCEEEEEecCCcEEEEECC-CCceEeee-------
Confidence            999988  9999999998   66778888 7899999999999999999999 99999999999 56655543       


Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  343 (432)
                       .+...+.+++|+|++ ++|++++.|+.|++||+++++.     ..+..|             ...|.+++|+|+|++|+
T Consensus       222 -~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~-------------~~~v~~~~~~~~~~~l~  281 (337)
T 1gxr_A          222 -DFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDK-----YQLHLH-------------ESCVLSLKFAYCGKWFV  281 (337)
T ss_dssp             -ECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCE-----EEECCC-------------SSCEEEEEECTTSSEEE
T ss_pred             -cCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCCe-----EEEcCC-------------ccceeEEEECCCCCEEE
Confidence             456779999999999 9999999999999999998764     556665             78999999999999999


Q ss_pred             EeeC-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          344 SRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       344 s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      +++. +.|++||+   +.+... .+.           ..+..+.......++++|+.||.+.+|+
T Consensus       282 ~~~~dg~i~~~~~~~~~~~~~~-~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          282 STGKDNLLNAWRTPYGASIFQS-KES-----------SSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             EEETTSEEEEEETTTCCEEEEE-ECS-----------SCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             EecCCCcEEEEECCCCeEEEEe-cCC-----------CcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            9755 99999999   222221 121           1222222222223688899999999998

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.2e-35  Score=270.66  Aligned_cols=270  Identities=15%  Similarity=0.237  Sum_probs=216.8

Q ss_pred             chhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccc
Q 014005            4 NREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF   83 (432)
Q Consensus         4 ~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   83 (432)
                      ++..+.....|+....   +.......|...|.+++|+|+|++|++|+.|+.+++|++.......               
T Consensus        81 s~s~Dg~v~vWd~~~~---~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~---------------  142 (354)
T 2pbi_B           81 SSSQDGKVIVWDSFTT---NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN---------------  142 (354)
T ss_dssp             EEETTSEEEEEETTTC---CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC---------------
T ss_pred             EEeCCCeEEEEECCCC---CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc---------------
Confidence            3344555667764321   1112233467789999999999999999999999999987543110               


Q ss_pred             cccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccc
Q 014005           84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS  163 (432)
Q Consensus        84 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  163 (432)
                            .......+.+|.            ..|.+++|  +|++..|++++.|++|++||+.+++...  .+..|.    
T Consensus       143 ------~~~~~~~~~~h~------------~~v~~~~~--~~~~~~l~t~s~D~~v~lwd~~~~~~~~--~~~~h~----  196 (354)
T 2pbi_B          143 ------MAAKKKSVAMHT------------NYLSACSF--TNSDMQILTASGDGTCALWDVESGQLLQ--SFHGHG----  196 (354)
T ss_dssp             ------SGGGCEEEEECS------------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEE--EEECCS----
T ss_pred             ------ccccceeeeccC------------CcEEEEEE--eCCCCEEEEEeCCCcEEEEeCCCCeEEE--EEcCCC----
Confidence                  112235677898            99999999  8999999999999999999999887433  333444    


Q ss_pred             ccccccccccccccCCC--CCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe
Q 014005          164 ENTLLAEKNFMNEHNPP--SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR  240 (432)
Q Consensus       164 ~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~  240 (432)
                             ..+.++++++  ++.++++++.  |+.+++||++   +++++..+ .+|...|++++|+|+++.+++| .|++
T Consensus       197 -------~~v~~~~~~~~~~g~~l~sgs~--Dg~v~~wd~~---~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~  263 (354)
T 2pbi_B          197 -------ADVLCLDLAPSETGNTFVSGGC--DKKAMVWDMR---SGQCVQAF-ETHESDVNSVRYYPSGDAFASGSDDAT  263 (354)
T ss_dssp             -------SCEEEEEECCCSSCCEEEEEET--TSCEEEEETT---TCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             -------CCeEEEEEEeCCCCCEEEEEeC--CCeEEEEECC---CCcEEEEe-cCCCCCeEEEEEeCCCCEEEEEeCCCe
Confidence                   6777777766  5679999988  9999999998   77888888 8999999999999999999999 9999


Q ss_pred             EEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc
Q 014005          241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK  320 (432)
Q Consensus       241 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~  320 (432)
                      |++||++ .......+     ....+...+.+++|+|++ ++|++|+.|+.|++||+++++.    +..+.+|       
T Consensus       264 v~lwd~~-~~~~~~~~-----~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~----~~~l~~h-------  325 (354)
T 2pbi_B          264 CRLYDLR-ADREVAIY-----SKESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGSR----VSILFGH-------  325 (354)
T ss_dssp             EEEEETT-TTEEEEEE-----CCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSE----EEEECCC-------
T ss_pred             EEEEECC-CCcEEEEE-----cCCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCce----EEEEECC-------
Confidence            9999999 55555544     112344578999999999 9999999999999999998876    5778887       


Q ss_pred             cceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEe
Q 014005          321 SFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFR  354 (432)
Q Consensus       321 ~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd  354 (432)
                            ...|++++|+|||++|++|+. ++|++|+
T Consensus       326 ------~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          326 ------ENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ------SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ------CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence                  789999999999999999855 9999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-35  Score=268.43  Aligned_cols=283  Identities=11%  Similarity=0.056  Sum_probs=230.5

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ...|.+.|++++|+|+|++|++|+.||.|++||+.+++                           ....+.+|.      
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------------------------~~~~~~~h~------   74 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE---------------------------RLGTLDGHT------   74 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC---------------------------EEEEECCCS------
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch---------------------------hhhhhhhcC------
Confidence            45799999999999999999999999999999998765                           336788899      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                            ..|.+++|  +|++++|++++.||.|++||+.+++......   +.           ..+.+++|+|++.+++.
T Consensus        75 ------~~v~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~-----------~~v~~~~~~~~~~~l~~  132 (369)
T 3zwl_B           75 ------GTIWSIDV--DCFTKYCVTGSADYSIKLWDVSNGQCVATWK---SP-----------VPVKRVEFSPCGNYFLA  132 (369)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEE---CS-----------SCEEEEEECTTSSEEEE
T ss_pred             ------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEee---cC-----------CCeEEEEEccCCCEEEE
Confidence                  99999999  8999999999999999999999887554433   22           67899999999999999


Q ss_pred             ceeecc-----ceEEEEeecccccce--------eeEEeecCCCC--CeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCc
Q 014005          188 LEWTEN-----MATKIANVGNSVHAR--------CQKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQ  251 (432)
Q Consensus       188 ~~~~~~-----~~v~i~d~~~~~~~~--------~~~~~~~~~~~--~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~  251 (432)
                      +..  +     +.+++||+.......        ....+ ..|..  .+.+++|+|+++.++++ .|+.|++||++....
T Consensus       133 ~~~--~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  209 (369)
T 3zwl_B          133 ILD--NVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE  209 (369)
T ss_dssp             EEC--CBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE
T ss_pred             ecC--CccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE
Confidence            887  6     899999987542211        22233 34555  89999999999999999 999999999994366


Q ss_pred             eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeeccee
Q 014005          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (432)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~  331 (432)
                      ....+       ..|...|.+++|+|++ ++|++++.||.|++||+++++.    ...+..              ...+.
T Consensus       210 ~~~~~-------~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~----~~~~~~--------------~~~~~  263 (369)
T 3zwl_B          210 YVDSI-------DLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQV----LKKYET--------------DCPLN  263 (369)
T ss_dssp             EEEEE-------ECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE----EEEEEC--------------SSCEE
T ss_pred             eEEEE-------ecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCce----eeeecC--------------CCCce
Confidence            66655       7788999999999999 9999999999999999998775    455654              57899


Q ss_pred             EEEEcCCCCEEEEeeC-C--------------eEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEe
Q 014005          332 DIKFANDGQHLLSRDY-M--------------NLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIIT  393 (432)
Q Consensus       332 ~~~~s~dg~~l~s~~~-~--------------~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (432)
                      .++|+|+++++++++. +              .+++||+   +++..+..|..           .+..+.......++++
T Consensus       264 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s  332 (369)
T 3zwl_B          264 TAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG-----------PLNTVAISPQGTSYAS  332 (369)
T ss_dssp             EEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS-----------CEEEEEECTTSSEEEE
T ss_pred             eEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC-----------cEEEEEECCCCCEEEE
Confidence            9999999999999744 5              8999999   56666666543           2222222222236889


Q ss_pred             ecccceeeeecc
Q 014005          394 TLYLINLSALSA  405 (432)
Q Consensus       394 g~~~~~i~~~~~  405 (432)
                      |+.||.|.+|+.
T Consensus       333 ~~~dg~v~iw~~  344 (369)
T 3zwl_B          333 GGEDGFIRLHHF  344 (369)
T ss_dssp             EETTSEEEEEEE
T ss_pred             EcCCCeEEEEEC
Confidence            999999999994

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.7e-35  Score=271.65  Aligned_cols=247  Identities=14%  Similarity=0.119  Sum_probs=195.2

Q ss_pred             ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      ...+|.+.|++++|+|++++| +++.||+|+|||+.+++..                       ........+|.     
T Consensus        89 ~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~-----------------------~~~~~~~~~h~-----  139 (357)
T 4g56_B           89 AGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESL-----------------------LVNKFAKYEHD-----  139 (357)
T ss_dssp             EEEECSSCEEEEEEETTTEEE-EEETTSCEEEC-------------------------------CCCCEEECCCS-----
T ss_pred             ccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeecccccee-----------------------EEEeeccCCCC-----
Confidence            345788999999999998755 5678999999999886532                       01112345788     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc-ce
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HG  185 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~  185 (432)
                             ..|.+++|  +|++++|++|+.|+.|++||+.+++..  ..+..|.           ..|.+++|++++. .+
T Consensus       140 -------~~V~~v~~--spdg~~l~sgs~dg~v~iwd~~~~~~~--~~~~~h~-----------~~v~~v~~s~~~~~~~  197 (357)
T 4g56_B          140 -------DIVKTLSV--FSDGTQAVSGGKDFSVKVWDLSQKAVL--KSYNAHS-----------SEVNCVAACPGKDTIF  197 (357)
T ss_dssp             -------SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTTEEE--EEECCCS-----------SCEEEEEECTTCSSCE
T ss_pred             -------CCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcEE--EEEcCCC-----------CCEEEEEEccCCCcee
Confidence                   99999999  899999999999999999999988743  3344455           7899999999875 66


Q ss_pred             ecceeeccceEEEEeecccccceeeEEe-ecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005          186 YHLEWTENMATKIANVGNSVHARCQKVY-PHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (432)
                      ++++.  |+.|++||++   ..++...+ ...+...+.+++|+|+ +.++++| .|+.|++||++ ..+....+      
T Consensus       198 ~s~~~--dg~v~~wd~~---~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~-~~~~~~~~------  265 (357)
T 4g56_B          198 LSCGE--DGRILLWDTR---KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK-NPDSAQTS------  265 (357)
T ss_dssp             EEEET--TSCEEECCTT---SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS-CGGGCEEE------
T ss_pred             eeecc--CCceEEEECC---CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC-CCcEeEEE------
Confidence            77777  9999999998   44444333 1456778999999997 4678888 99999999999 66666665      


Q ss_pred             cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC-CCCE
Q 014005          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQH  341 (432)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-dg~~  341 (432)
                       .+|...|++++|+|++.++||+|+.|++|+|||+++++.    ++ ..+|             ...|++++|+| |+++
T Consensus       266 -~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~----~~-~~~H-------------~~~V~~vafsP~d~~~  326 (357)
T 4g56_B          266 -AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV----FR-DLSH-------------RDFVTGVAWSPLDHSK  326 (357)
T ss_dssp             -CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE----EE-ECCC-------------SSCEEEEEECSSSTTE
T ss_pred             -eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE----eE-ECCC-------------CCCEEEEEEeCCCCCE
Confidence             789999999999999867899999999999999998875    33 3466             78999999998 7999


Q ss_pred             EEEee-CCeEEEEec
Q 014005          342 LLSRD-YMNLKVFRY  355 (432)
Q Consensus       342 l~s~~-~~~i~iwd~  355 (432)
                      |++|+ |++|++||+
T Consensus       327 l~s~s~Dg~v~iW~~  341 (357)
T 4g56_B          327 FTTVGWDHKVLHHHL  341 (357)
T ss_dssp             EEEEETTSCEEEEEC
T ss_pred             EEEEcCCCeEEEEEC
Confidence            99975 599999999

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.5e-35  Score=263.00  Aligned_cols=270  Identities=19%  Similarity=0.279  Sum_probs=209.9

Q ss_pred             chhhccccchhhhhhh---hcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcc
Q 014005            4 NREEASASLEWKCSQA---FGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQ   80 (432)
Q Consensus         4 ~~~~~~~~~~w~~~~~---~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   80 (432)
                      ++..+.....|++...   ++ ........|...|++++|+|+|++|++|+.|++|+|||+.+++               
T Consensus        35 s~s~D~~v~~W~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~---------------   98 (319)
T 3frx_A           35 SASRDKTLISWKLTGDDQKFG-VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE---------------   98 (319)
T ss_dssp             EEETTSEEEEEEEEEETTEEE-EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------------
T ss_pred             EecCCccEEEecCCCCCcccc-ccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC---------------
Confidence            3445556677876521   11 0011234689999999999999999999999999999998875               


Q ss_pred             ccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCc
Q 014005           81 MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF  160 (432)
Q Consensus        81 ~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  160 (432)
                                  ....+.+|.            ..|.+++|  +|++.++++|+.|++|++||+.......+   ..|. 
T Consensus        99 ------------~~~~~~~h~------------~~v~~~~~--~~~~~~l~s~s~D~~i~vwd~~~~~~~~~---~~h~-  148 (319)
T 3frx_A           99 ------------TYQRFVGHK------------SDVMSVDI--DKKASMIISGSRDKTIKVWTIKGQCLATL---LGHN-  148 (319)
T ss_dssp             ------------EEEEEECCS------------SCEEEEEE--CTTSCEEEEEETTSCEEEEETTSCEEEEE---CCCS-
T ss_pred             ------------eeEEEccCC------------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCeEEEE---eccC-
Confidence                        346889999            99999999  89999999999999999999976543333   3333 


Q ss_pred             cccccccccccccccccCCCCC------cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEE
Q 014005          161 VSSENTLLAEKNFMNEHNPPSF------AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV  234 (432)
Q Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  234 (432)
                                ..+..+.+.|..      ..+++++.  |+.|++||++   ..++...+ .+|...|.+++|+|++++|+
T Consensus       149 ----------~~v~~~~~~~~~~~~~~~~~l~s~~~--d~~i~~wd~~---~~~~~~~~-~~h~~~v~~~~~sp~g~~l~  212 (319)
T 3frx_A          149 ----------DWVSQVRVVPNEKADDDSVTIISAGN--DKMVKAWNLN---QFQIEADF-IGHNSNINTLTASPDGTLIA  212 (319)
T ss_dssp             ----------SCEEEEEECCC------CCEEEEEET--TSCEEEEETT---TTEEEEEE-CCCCSCEEEEEECTTSSEEE
T ss_pred             ----------CcEEEEEEccCCCCCCCccEEEEEeC--CCEEEEEECC---cchhheee-cCCCCcEEEEEEcCCCCEEE
Confidence                      677888888754      47788877  9999999998   66777777 79999999999999999999


Q ss_pred             EE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccc
Q 014005          235 SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA  313 (432)
Q Consensus       235 ~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h  313 (432)
                      +| .|+.|++||++ .++.+..+       .. ...|.+++|+|++ .+|++++.+ .+++|++..+..    ...+..+
T Consensus       213 s~~~dg~i~iwd~~-~~~~~~~~-------~~-~~~v~~~~~sp~~-~~la~~~~~-~i~v~~~~~~~~----~~~~~~~  277 (319)
T 3frx_A          213 SAGKDGEIMLWNLA-AKKAMYTL-------SA-QDEVFSLAFSPNR-YWLAAATAT-GIKVFSLDPQYL----VDDLRPE  277 (319)
T ss_dssp             EEETTCEEEEEETT-TTEEEEEE-------EC-CSCEEEEEECSSS-SEEEEEETT-EEEEEEETTEEE----EEEECCC
T ss_pred             EEeCCCeEEEEECC-CCcEEEEe-------cC-CCcEEEEEEcCCC-CEEEEEcCC-CcEEEEeCcCee----eeccCcc
Confidence            99 99999999999 66666655       33 3579999999999 888887754 699999987654    2333321


Q ss_pred             ccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005          314 AESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       314 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~  355 (432)
                      .     ......+...+.+++|+|||++|++|+ |+.|++||+
T Consensus       278 ~-----~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~  315 (319)
T 3frx_A          278 F-----AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV  315 (319)
T ss_dssp             C-----TTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             c-----cccccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence            0     000111256789999999999999985 499999997

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.2e-35  Score=272.18  Aligned_cols=294  Identities=12%  Similarity=0.070  Sum_probs=222.8

Q ss_pred             ccCCCcEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ..|.+.|++++|+|+| ++|++|+.||.|+|||+.+++..                         ......+|.      
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------~~~~~~~h~------  118 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-------------------------SFIQGMGPG------  118 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-------------------------EEECCCSTT------
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-------------------------eeeecCCcC------
Confidence            4688999999999999 99999999999999999876532                         112234688      


Q ss_pred             chhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          108 KSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                            ..|.+++|  +| ++++|++++.|+.|++||+.+.....+.....+.           ..+.+++|+|++.+++
T Consensus       119 ------~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~  179 (383)
T 3ei3_B          119 ------DAITGMKF--NQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWD-----------YWYCCVDVSVSRQMLA  179 (383)
T ss_dssp             ------CBEEEEEE--ETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSS-----------CCEEEEEEETTTTEEE
T ss_pred             ------CceeEEEe--CCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCC-----------CCeEEEEECCCCCEEE
Confidence                  99999999  78 6789999999999999999976655555444444           6799999999999999


Q ss_pred             cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCC---CceeeEeecCCC
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEIS---DQCFNIVDMKPS  261 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~---~~~~~~~~~~~~  261 (432)
                      +++.  ++.|++||++    .+++..+ .+|...|.+++|+|+++ +++++ .|+.|++||++..   ...+..      
T Consensus       180 ~~~~--d~~i~i~d~~----~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------  246 (383)
T 3ei3_B          180 TGDS--TGRLLLLGLD----GHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE------  246 (383)
T ss_dssp             EEET--TSEEEEEETT----SCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE------
T ss_pred             EECC--CCCEEEEECC----CCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE------
Confidence            9988  9999999984    4566677 78999999999999999 88898 9999999999832   333433      


Q ss_pred             CcCCCCcceEEEEEcC-CCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCC-c----cceeeeecceeEEEE
Q 014005          262 NMDDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-K----SFFTEIIASISDIKF  335 (432)
Q Consensus       262 ~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~-~----~~~~~~~~~v~~~~~  335 (432)
                        .+|...|++++|+| ++ ++|++++.|+.|++||+++++.    ...+.+|...... .    ..+. ....+..++|
T Consensus       247 --~~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~  318 (383)
T 3ei3_B          247 --MPHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSK----PDQIIIHPHRQFQHLTPIKATWH-PMYDLIVAGR  318 (383)
T ss_dssp             --EECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTS----CSEEEECCBCCCTTSCCCCCEEC-SSSSEEEEEC
T ss_pred             --ecCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCcc----ccccccccccccccccceEEecc-CCCCceEEEe
Confidence              35888999999999 98 9999999999999999998775    4555554211100 0    0000 0234556778


Q ss_pred             cCCCCEEEEe-eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          336 ANDGQHLLSR-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       336 s~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      +|||++  +| .++.|++||+   +++..+..+..         ...++.+.......++++|+ |+.|.+|+.
T Consensus       319 s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~---------~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~  380 (383)
T 3ei3_B          319 YPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA---------AGIISLNKFSPTGDVLASGM-GFNILIWNR  380 (383)
T ss_dssp             BCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB---------CSCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred             cCCccc--ccCCCCeEEEEecCCCceeeeecCCCC---------CceEEEEEEecCccEEEEec-CCcEEEEec
Confidence            888877  54 5599999999   56666665331         11222212222223577776 899999994

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=9.1e-35  Score=270.67  Aligned_cols=239  Identities=16%  Similarity=0.242  Sum_probs=201.5

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ...|++++|+|+|++||+|+.|++|+|||+++++                           ....+.+|.          
T Consensus       123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~---------------------------~~~~~~~h~----------  165 (393)
T 1erj_A          123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK---------------------------IVMILQGHE----------  165 (393)
T ss_dssp             CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS----------
T ss_pred             ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------------------------EEEEEccCC----------
Confidence            3359999999999999999999999999998765                           336788999          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC-CCcceeccee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGYHLEW  190 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~  190 (432)
                        ..|.+++|  +|++++|++++.|++|++||+.+++........              ..+..++++| ++.++++++.
T Consensus       166 --~~v~~~~~--~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~l~~~s~  227 (393)
T 1erj_A          166 --QDIYSLDY--FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE--------------DGVTTVAVSPGDGKYIAAGSL  227 (393)
T ss_dssp             --SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECS--------------SCEEEEEECSTTCCEEEEEET
T ss_pred             --CCEEEEEE--cCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC--------------CCcEEEEEECCCCCEEEEEcC
Confidence              99999999  899999999999999999999988754433321              5688899998 8899999988


Q ss_pred             eccceEEEEeecccccceeeEEee------cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC-----------ce
Q 014005          191 TENMATKIANVGNSVHARCQKVYP------HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-----------QC  252 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~-----------~~  252 (432)
                        |+.|++||++   .+.++..+.      .+|...|.+++|+|+++++++| .|+.|++||++...           .+
T Consensus       228 --d~~v~iwd~~---~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~  302 (393)
T 1erj_A          228 --DRAVRVWDSE---TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC  302 (393)
T ss_dssp             --TSCEEEEETT---TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CE
T ss_pred             --CCcEEEEECC---CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcc
Confidence              9999999998   444444431      4688999999999999999999 99999999997321           12


Q ss_pred             eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeE
Q 014005          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (432)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  332 (432)
                      ...       +.+|...|.+++|+|++ .+|++|+.||.|++||+++++.    +..+.+|             ...|.+
T Consensus       303 ~~~-------~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~~~~----~~~l~~h-------------~~~v~~  357 (393)
T 1erj_A          303 EVT-------YIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNP----LLMLQGH-------------RNSVIS  357 (393)
T ss_dssp             EEE-------EECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCE----EEEEECC-------------SSCEEE
T ss_pred             eEE-------EecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCeE----EEEECCC-------------CCCEEE
Confidence            222       36899999999999999 9999999999999999998876    6788887             789999


Q ss_pred             EEEcC------CCCEEEEee-CCeEEEEec
Q 014005          333 IKFAN------DGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       333 ~~~s~------dg~~l~s~~-~~~i~iwd~  355 (432)
                      ++|++      ++.+|++|+ |++|++|++
T Consensus       358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~  387 (393)
T 1erj_A          358 VAVANGSSLGPEYNVFATGSGDCKARIWKY  387 (393)
T ss_dssp             EEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             EEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence            99986      688999975 599999998

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2e-35  Score=278.91  Aligned_cols=291  Identities=13%  Similarity=0.071  Sum_probs=210.6

Q ss_pred             cCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        30 ~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      .|.+.|+||+|+| ++++||+|+.||+|+|||+.+++..                         ....+.+|.       
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-------------------------~~~~~~gH~-------  164 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-------------------------TFIKGIGAG-------  164 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------------------EEECCCSSS-------
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------------------eEEEccCCC-------
Confidence            5678899999999 5679999999999999999876532                         334567898       


Q ss_pred             hhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          109 SLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                           +.|++|+|  +| ++++|++|+.||+|++||++++....+.......           ..+.+++|++++.++++
T Consensus       165 -----~~V~~l~f--~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~  226 (435)
T 4e54_B          165 -----GSITGLKF--NPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTIN-----------IWFCSLDVSASSRMVVT  226 (435)
T ss_dssp             -----CCCCEEEE--CSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCS-----------CCCCCEEEETTTTEEEE
T ss_pred             -----CCEEEEEE--eCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCC-----------ccEEEEEECCCCCEEEE
Confidence                 99999999  76 6889999999999999999887655554444333           56788999999999999


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      |+.  ++.|++||++.    +++..+ .+|...|.+++|+|+++ ++++| .|+.|++||++. ......+    ....+
T Consensus       227 g~~--dg~i~~wd~~~----~~~~~~-~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~-~~~~~~~----~~~~~  294 (435)
T 4e54_B          227 GDN--VGNVILLNMDG----KELWNL-RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ-VRGKASF----LYSLP  294 (435)
T ss_dssp             ECS--SSBEEEEESSS----CBCCCS-BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT-CCSSSCC----SBCCB
T ss_pred             EeC--CCcEeeeccCc----ceeEEE-ecccceEEeeeecCCCceEEEEecCcceeeEEeccc-ccccceE----EEeee
Confidence            998  99999999863    345556 78999999999999876 67778 899999999983 3322211    12367


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                      |...|++++|+|++ ++|++++.||.|++||++++..    ...+..|......       ...+....|+|++.+++++
T Consensus       295 h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~----~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  362 (435)
T 4e54_B          295 HRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDC----PLGLIPHPHRHFQ-------HLTPIKAAWHPRYNLIVVG  362 (435)
T ss_dssp             CSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSS----EEEECCCCCCCCS-------SSCCCBCEECSSSSCEEEE
T ss_pred             ccccccceeECCCC-CeeEEEcCCCEEEEEECCCCcc----ceEEecccccccc-------cceeEEEEEcCCCCEEEEE
Confidence            89999999999999 9999999999999999998775    3555554211110       0112234455555444443


Q ss_pred             ------------eC-CeEEEEec---CcceeEeecceeeeehhhhhccccccc-ccceeeEEEEeecccceeeeecc
Q 014005          346 ------------DY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSI-YALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       346 ------------~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                                  .+ +.|++||.   +.+..+..+.          ...+..+ .++....++++|+ |+.|.+|+.
T Consensus       363 ~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~----------~~~v~s~~~fspdg~~lasg~-d~~i~iW~~  428 (435)
T 4e54_B          363 RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE----------SSGISSLNEFNPMGDTLASAM-GYHILIWSQ  428 (435)
T ss_dssp             CCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS----------CCCCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred             EcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC----------CCcEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence                        23 68999999   4444443221          1122221 1111122467776 789999994

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-34  Score=263.70  Aligned_cols=253  Identities=14%  Similarity=0.195  Sum_probs=192.7

Q ss_pred             CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      |.+.|++++|+|+|++||+|+.|++|+||+++.....                    .........+.+|.         
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~--------------------~~~~~~~~~~~~h~---------  107 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR--------------------TFEMDLLAIIEGHE---------  107 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC---------------------------CCCEEEEEEC------------
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc--------------------cccceeEEEEcCCC---------
Confidence            8999999999999999999999999999998653210                    00123456788999         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc-c-eeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-K-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                         ..|.+++|  +|++++|++|+.|++|++||+... . .+.+..+..|.           ..|.+++|+|++.+++++
T Consensus       108 ---~~V~~v~~--sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~-----------~~v~~v~~~p~~~~l~s~  171 (330)
T 2hes_X          108 ---NEVKGVAW--SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHS-----------QDVKHVIWHPSEALLASS  171 (330)
T ss_dssp             ----CEEEEEE--CTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCS-----------SCEEEEEECSSSSEEEEE
T ss_pred             ---CcEEEEEE--CCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCC-----------CceEEEEECCCCCEEEEE
Confidence               99999999  899999999999999999999532 2 23344455555           789999999999999999


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCCCCC-------ceeeEeec
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISD-------QCFNIVDM  258 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~-~d~~i~lwd~~~~~-------~~~~~~~~  258 (432)
                      +.  |+.|++||.... ...++..+ .+|...|.+++|+|+  +..+++| .|++|++||++...       .+...+  
T Consensus       172 s~--D~~i~iW~~~~~-~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~--  245 (330)
T 2hes_X          172 SY--DDTVRIWKDYDD-DWECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAIL--  245 (330)
T ss_dssp             ET--TSCEEEEEEETT-EEEEEEEE-CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEEC--
T ss_pred             cC--CCeEEEEECCCC-CeeEEEEc-cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeec--
Confidence            98  999999998732 23677778 899999999999998  6789999 99999999997221       122222  


Q ss_pred             CCCCcC-CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeec-ceeEEEEc
Q 014005          259 KPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIKFA  336 (432)
Q Consensus       259 ~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~-~v~~~~~s  336 (432)
                           . .|...|.+++|+++  .+|++++.||.|++||..+++... ....+.+|             .. .|.+++|+
T Consensus       246 -----~~~h~~~v~~v~~s~~--~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~h-------------~~~~v~~v~~~  304 (330)
T 2hes_X          246 -----PDVHKRQVYNVAWGFN--GLIASVGADGVLAVYEEVDGEWKV-FAKRALCH-------------GVYEINVVKWL  304 (330)
T ss_dssp             -----CSCCSSCEEEEEECTT--SCEEEEETTSCEEEEEEETTEEEE-EEEESCTT-------------TTSCEEEEEEC
T ss_pred             -----ccccccceEEEEEcCC--CEEEEEeCCCEEEEEEcCCCceEE-Eecccccc-------------ccceEEEEEEe
Confidence                 3 38899999999976  478999999999999998763100 01223455             44 89999999


Q ss_pred             C--CCCEEEEee-CCeEEEEec
Q 014005          337 N--DGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       337 ~--dg~~l~s~~-~~~i~iwd~  355 (432)
                      |  ++++|++|+ |++|++||+
T Consensus       305 ~~~~~~~las~s~Dg~v~~W~~  326 (330)
T 2hes_X          305 ELNGKTILATGGDDGIVNFWSL  326 (330)
T ss_dssp             -----CCEEEEETTSEEEEEEC
T ss_pred             cCCCceEEEEecCCCcEEEEEe
Confidence            9  789999975 599999997

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.9e-34  Score=263.47  Aligned_cols=279  Identities=13%  Similarity=0.202  Sum_probs=207.3

Q ss_pred             chhhccccchhhhhhhhcC----CCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhc
Q 014005            4 NREEASASLEWKCSQAFGE----RNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEK   79 (432)
Q Consensus         4 ~~~~~~~~~~w~~~~~~~~----~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~   79 (432)
                      ++..+.....|++...-..    ........|.+.|++++|+|++.+|++|+.|++|++||+.+++              
T Consensus        44 sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~--------------  109 (343)
T 2xzm_R           44 SGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT--------------  109 (343)
T ss_dssp             EEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC--------------
T ss_pred             EEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc--------------
Confidence            3344556677876531000    0112234789999999999999999999999999999998865              


Q ss_pred             cccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCC
Q 014005           80 QMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP  159 (432)
Q Consensus        80 ~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  159 (432)
                                   ....+.+|.            ..|.+++|  +|++++|++++.|+.|++||+.............+.
T Consensus       110 -------------~~~~~~~h~------------~~v~~v~~--sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  162 (343)
T 2xzm_R          110 -------------TYKRFVGHQ------------SEVYSVAF--SPDNRQILSAGAEREIKLWNILGECKFSSAEKENHS  162 (343)
T ss_dssp             -------------EEEEEECCC------------SCEEEEEE--CSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCS
T ss_pred             -------------EEEEEcCCC------------CcEEEEEE--CCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCC
Confidence                         336788999            99999999  899999999999999999999754332222222333


Q ss_pred             ccccccccccccccccccCCCCC----------cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC
Q 014005          160 FVSSENTLLAEKNFMNEHNPPSF----------AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD  229 (432)
Q Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  229 (432)
                                 ..+.+++|+|++          .++++++.  |+.|++||.    .......+ .+|...|.+++|+|+
T Consensus       163 -----------~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~--d~~i~iwd~----~~~~~~~~-~~h~~~v~~~~~s~~  224 (343)
T 2xzm_R          163 -----------DWVSCVRYSPIMKSANKVQPFAPYFASVGW--DGRLKVWNT----NFQIRYTF-KAHESNVNHLSISPN  224 (343)
T ss_dssp             -----------SCEEEEEECCCCCSCSCCCSSCCEEEEEET--TSEEEEEET----TTEEEEEE-ECCSSCEEEEEECTT
T ss_pred             -----------ceeeeeeeccccccccccCCCCCEEEEEcC--CCEEEEEcC----CCceeEEE-cCccccceEEEECCC
Confidence                       678888888876          67888887  999999994    34566666 789999999999999


Q ss_pred             CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccce
Q 014005          230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  308 (432)
Q Consensus       230 ~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  308 (432)
                      +++|++| .|+.|++||+.........+        .+...|.+++|+|++ ++++++ .|+.|++||+.+++...  ..
T Consensus       225 g~~l~sgs~dg~v~iwd~~~~~~~~~~~--------~~~~~v~~v~~sp~~-~~la~~-~d~~v~iw~~~~~~~~~--~~  292 (343)
T 2xzm_R          225 GKYIATGGKDKKLLIWDILNLTYPQREF--------DAGSTINQIAFNPKL-QWVAVG-TDQGVKIFNLMTQSKAP--VC  292 (343)
T ss_dssp             SSEEEEEETTCEEEEEESSCCSSCSEEE--------ECSSCEEEEEECSSS-CEEEEE-ESSCEEEEESSSCCSCS--EE
T ss_pred             CCEEEEEcCCCeEEEEECCCCcccceee--------cCCCcEEEEEECCCC-CEEEEE-CCCCEEEEEeCCCCCCc--eE
Confidence            9999999 99999999996344433332        234569999999998 877655 57889999998765421  11


Q ss_pred             eecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005          309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       309 ~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~  355 (432)
                      .+..++.  .......+|...|.+++|+|+|++|++|+ ||.|++||+
T Consensus       293 ~~~~~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~  338 (343)
T 2xzm_R          293 TIEAEPI--TKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF  338 (343)
T ss_dssp             ECCCCSG--GGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred             EeecCcc--hhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence            3321100  00001122467899999999999999985 599999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.4e-35  Score=274.94  Aligned_cols=281  Identities=17%  Similarity=0.243  Sum_probs=219.0

Q ss_pred             cchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccc
Q 014005            3 LNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMD   82 (432)
Q Consensus         3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   82 (432)
                      +++..+.....|......   .......|...|.+++|+|+|++||+|+.|+.+++|++.+....               
T Consensus        82 ~s~s~D~~v~iWd~~~~~---~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~---------------  143 (380)
T 3iz6_a           82 VSASQDGRLIVWNALTSQ---KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR---------------  143 (380)
T ss_dssp             EEEETTSEEEEEETTTTE---EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC---------------
T ss_pred             EEEeCCCeEEEEECCCCc---cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc---------------
Confidence            344555666778764311   11223458889999999999999999999999999999764311               


Q ss_pred             ccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeeeeec---CCC
Q 014005           83 FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEM---DHF  158 (432)
Q Consensus        83 ~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~  158 (432)
                           .........+.+|.            +.|.++.|  .|+ +..|++|+.|++|++||+.+++.......   ..|
T Consensus       144 -----~~~~~~~~~~~gh~------------~~v~~~~~--~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h  204 (380)
T 3iz6_a          144 -----DGNMPVSRVLTGHK------------GYASSCQY--VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH  204 (380)
T ss_dssp             -----CCSSTTCCBCCCCS------------SCCCCCBC--CSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSC
T ss_pred             -----cCCccceeeccCCC------------cceEEEEE--ecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCC
Confidence                 00122335678898            89999999  665 45799999999999999998875443321   223


Q ss_pred             CccccccccccccccccccCCC-CCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-
Q 014005          159 PFVSSENTLLAEKNFMNEHNPP-SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-  236 (432)
Q Consensus       159 ~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-  236 (432)
                      .           ..+.++.+++ ++.++++++.  |+.|++||++.  ...+++.+ .+|.+.|++++|+|++++|++| 
T Consensus       205 ~-----------~~v~~~~~~~~~~~~l~sgs~--D~~v~~wd~~~--~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s  268 (380)
T 3iz6_a          205 T-----------ADVLSLSINSLNANMFISGSC--DTTVRLWDLRI--TSRAVRTY-HGHEGDINSVKFFPDGQRFGTGS  268 (380)
T ss_dssp             C-----------SCEEEEEECSSSCCEEEEEET--TSCEEEEETTT--TCCCCEEE-CCCSSCCCEEEECTTSSEEEEEC
T ss_pred             c-----------cCeEEEEeecCCCCEEEEEEC--CCeEEEEECCC--CCcceEEE-CCcCCCeEEEEEecCCCeEEEEc
Confidence            3           6788888876 7888999988  99999999973  23566777 7999999999999999999999 


Q ss_pred             cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee----cc
Q 014005          237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL----RD  312 (432)
Q Consensus       237 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~  312 (432)
                      .|++|++||++ ++..+..+...+.....+...|++++|+|++ ++|++|+.||.|++||+.+++.    ...+    .+
T Consensus       269 ~D~~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~----~~~~~~~~~~  342 (380)
T 3iz6_a          269 DDGTCRLFDMR-TGHQLQVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEM----VLNLGTLQNS  342 (380)
T ss_dssp             SSSCEEEEETT-TTEEEEEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCE----EEEECCSCSS
T ss_pred             CCCeEEEEECC-CCcEEEEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCce----EEEEecccCC
Confidence            99999999999 6777776643333333444568999999999 9999999999999999988765    3333    45


Q ss_pred             cccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005          313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       313 h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~  355 (432)
                      |             .+.|.+++|+|||++|++|+ |++|++|++
T Consensus       343 h-------------~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~  373 (380)
T 3iz6_a          343 H-------------EGRISCLGLSSDGSALCTGSWDKNLKIWAF  373 (380)
T ss_dssp             C-------------CCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred             C-------------CCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence            5             78999999999999999985 499999998

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.6e-35  Score=272.04  Aligned_cols=314  Identities=10%  Similarity=0.058  Sum_probs=224.7

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|.+.|++++|+|  ++|++|+.||.|++|++++++..                     ........+.+|.       
T Consensus        13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~---------------------~~~~~~~~~~~h~-------   62 (397)
T 1sq9_A           13 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE---------------------NPKDKSYSHFVHK-------   62 (397)
T ss_dssp             SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC---------------------CGGGGEEEEECCT-------
T ss_pred             hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc---------------------cCCCcceEEecCC-------
Confidence            36899999999999  89999999999999999886521                     0123446788898       


Q ss_pred             hhhhhcceeEEEEEEcCC----C---CEEEEEeCCCeEEEEEccCcce------eeeeecCCCCcccccccccccccccc
Q 014005          109 SLEIEEKINRVRWCAAPN----G---SMFILSTNDKTIKLWKVRDQKV------KKIKEMDHFPFVSSENTLLAEKNFMN  175 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~----~---~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~  175 (432)
                           ..|.+++|  +|+    +   ++|++++.|+.|++||+.+++.      ..+..+..+         .....|.+
T Consensus        63 -----~~v~~~~~--~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~  126 (397)
T 1sq9_A           63 -----SGLHHVDV--LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD---------MKKHSFWA  126 (397)
T ss_dssp             -----TCEEEEEE--EEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT---------GGGSCEEE
T ss_pred             -----CcEEEEEE--ecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccc---------cCCCcEEE
Confidence                 99999999  667    8   9999999999999999987762      232222111         00268999


Q ss_pred             ccCC----CCCcc-eecceeeccceEEEEeecccc---cceeeE-----Eee------cCCCCCeeEEEeCCCCCEEEEE
Q 014005          176 EHNP----PSFAH-GYHLEWTENMATKIANVGNSV---HARCQK-----VYP------HAHDFNINSISNNSDCETFVSA  236 (432)
Q Consensus       176 ~~~~----~~~~~-~~~~~~~~~~~v~i~d~~~~~---~~~~~~-----~~~------~~~~~~i~~~~~~~~~~~l~~~  236 (432)
                      ++|+    |++.+ +++++.  ++.+++||+....   ...++.     .+.      ..|...|.+++|+|++ .++++
T Consensus       127 ~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~  203 (397)
T 1sq9_A          127 LKWGASNDRLLSHRLVATDV--KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG  203 (397)
T ss_dssp             EEEECCC----CEEEEEEET--TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEE
T ss_pred             EEEeeccCCCCceEEEEEeC--CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEE
Confidence            9999    99999 999888  9999999998400   023332     441      3478899999999999 99999


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCCCCcCC---C---CcceEEEEEcCCCCcEEEEEeCC---CeEEEEEcccccccccc
Q 014005          237 -DDLRINLWNLEISDQCFNIVDMKPSNMDD---L---TEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHS  306 (432)
Q Consensus       237 -~d~~i~lwd~~~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~  306 (432)
                       .|+.|++||++ ..+.+..+       ..   |   ...|.+++|+|++ ++|++++.|   |.|++||+++++.    
T Consensus       204 ~~dg~i~i~d~~-~~~~~~~~-------~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~----  270 (397)
T 1sq9_A          204 FNNGTVQISELS-TLRPLYNF-------ESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGER----  270 (397)
T ss_dssp             CTTSEEEEEETT-TTEEEEEE-------ECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCE----
T ss_pred             eCCCcEEEEECC-CCceeEEE-------eccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCcc----
Confidence             99999999999 56666665       55   7   8899999999998 999999999   9999999998775    


Q ss_pred             ceeecccccccCC-ccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec---CcceeEe------ecceeee----eh
Q 014005          307 ARILRDAAESHGS-KSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMTLS------FCGIYVW----IL  371 (432)
Q Consensus       307 ~~~~~~h~~~~~~-~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~------~~~~~~~----~~  371 (432)
                      +..+... ..+.. ......|...|.+++|+|++++|++++ ++.|++||+   +++..+.      .|.....    ..
T Consensus       271 ~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  349 (397)
T 1sq9_A          271 IGSLSVP-THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG  349 (397)
T ss_dssp             EEEECBC---------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred             cceeccC-cccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccc
Confidence            5667660 00000 000000178999999999999999985 499999999   5666666      3300000    00


Q ss_pred             hhhhcccccccccceee----------EEEEeecccceeeeecc
Q 014005          372 RQLQHSRFMSIYALSCV----------IYIITTLYLINLSALSA  405 (432)
Q Consensus       372 ~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~i~~~~~  405 (432)
                      ..+....+..+......          .++++|+.||.|.+|+.
T Consensus       350 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~  393 (397)
T 1sq9_A          350 DSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  393 (397)
T ss_dssp             CBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             ccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence            00001222222222222          36899999999999984

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.5e-34  Score=280.40  Aligned_cols=276  Identities=18%  Similarity=0.241  Sum_probs=230.9

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ...|...|++++|+|+|++|++++.|+.|++|+.+..                            ....+.+|.      
T Consensus       258 ~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~----------------------------~~~~~~~h~------  303 (577)
T 2ymu_A          258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ----------------------------LLQTLTGHS------  303 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC----------------------------EEEEECCCS------
T ss_pred             EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc----------------------------EEEEEecCC------
Confidence            3468899999999999999999999999999996542                            335788898      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                            ..|.+++|  +|+++++++++.|+.|++||+.......+   ..+.           ..+.+++|+|++.++++
T Consensus       304 ------~~v~~~~~--~~~~~~l~t~~~d~~i~~w~~~~~~~~~~---~~~~-----------~~v~~~~~s~~g~~l~~  361 (577)
T 2ymu_A          304 ------SSVWGVAF--SPDGQTIASASDDKTVKLWNRNGQHLQTL---TGHS-----------SSVWGVAFSPDGQTIAS  361 (577)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCEEEEE---CCCS-----------SCEEEEEECTTSSEEEE
T ss_pred             ------CCeEEEEE--CCCCCEEEEEeCCCeEEEEeCCCCeeEEE---eCCC-----------CCEEEEEECCCCCEEEE
Confidence                  99999999  89999999999999999999877654443   3333           67889999999999999


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      +..  ++.+++|+.    ..+.+..+ .+|...|.+++|+|++++|+++ .|+.|++||..  ++.+..+       .+|
T Consensus       362 ~~~--dg~v~~~~~----~~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~~~~~~-------~~~  425 (577)
T 2ymu_A          362 ASD--DKTVKLWNR----NGQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTL-------TGH  425 (577)
T ss_dssp             EET--TSEEEEEET----TCCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--CCEEEEE-------ECC
T ss_pred             EeC--CCEEEEEcC----CCCEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEEe-------cCC
Confidence            988  999999996    44566777 7899999999999999999999 99999999976  5566655       789


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~  346 (432)
                      ...|++++|+|++ ++|++++.|+.|++||+. ++.    +..+.+|             ...|.+++|+|||++|++++
T Consensus       426 ~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~-~~~----~~~~~~~-------------~~~v~~~~~spd~~~las~~  486 (577)
T 2ymu_A          426 SSSVWGVAFSPDD-QTIASASDDKTVKLWNRN-GQL----LQTLTGH-------------SSSVRGVAFSPDGQTIASAS  486 (577)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSEEEEEETT-SCE----EEEEECC-------------SSCEEEEEECTTSCEEEEEE
T ss_pred             CCCeEEEEECCCC-CEEEEEcCCCEEEEEECC-CCE----EEEEcCC-------------CCCEEEEEEcCCCCEEEEEe
Confidence            9999999999999 999999999999999975 443    5777786             78999999999999999975


Q ss_pred             C-CeEEEEec--CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          347 Y-MNLKVFRY--EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       347 ~-~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      . +.|++||.  ++++.+..|..           .+..+.......++++|+.|+.|++|+.
T Consensus       487 ~d~~i~iw~~~~~~~~~~~~h~~-----------~v~~l~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          487 DDKTVKLWNRNGQLLQTLTGHSS-----------SVRGVAFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             TTSEEEEEETTSCEEEEEECCSS-----------CEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             CCCEEEEEcCCCCEEEEEeCCCC-----------CEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence            4 99999999  77777777654           2222222222235889999999999994

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-34  Score=272.98  Aligned_cols=278  Identities=13%  Similarity=0.144  Sum_probs=206.9

Q ss_pred             ccCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        29 ~~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ..|.+.|++++|+| +|++||+|+.||+|+|||+.+.....                     ..+....+ +|.      
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~---------------------~~~~~~~~-~h~------  111 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE---------------------VYSSSLTY-DCS------  111 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC---------------------CCSCSEEE-ECS------
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc---------------------ccceeeec-cCC------
Confidence            35789999999999 99999999999999999987621100                     01111222 477      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEcc---CcceeeeeecCCCCccccccccc--ccccccccc--CCC
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR---DQKVKKIKEMDHFPFVSSENTLL--AEKNFMNEH--NPP  180 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~--~~~  180 (432)
                            ..|.+++|  +|++++|++++.||.|++||+.   .++........   .+..+....  ....+.++.  +++
T Consensus       112 ------~~v~~~~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~  180 (437)
T 3gre_A          112 ------STVTQITM--IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE---CIRKINLKNFGKNEYAVRMRAFVNE  180 (437)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE---EEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred             ------CCEEEEEE--eCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc---eeEEEEccCcccccCceEEEEEEcC
Confidence                  89999999  8999999999999999999995   44322221110   000000011  234555555  568


Q ss_pred             CCcceecceeeccceEEEEeecccccceeeEEeecC--CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEee
Q 014005          181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHA--HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD  257 (432)
Q Consensus       181 ~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~  257 (432)
                      ++.++++++.  ++.|++||++   ..+++..+ ..  |...|.+++|+|+++++++| .||.|++||++ .+..+..+.
T Consensus       181 ~~~~l~~~~~--d~~i~iwd~~---~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~  253 (437)
T 3gre_A          181 EKSLLVALTN--LSRVIIFDIR---TLERLQII-ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR-FNVLIRSWS  253 (437)
T ss_dssp             SCEEEEEEET--TSEEEEEETT---TCCEEEEE-ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT-TTEEEEEEB
T ss_pred             CCCEEEEEeC--CCeEEEEeCC---CCeeeEEE-ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC-CccEEEEEe
Confidence            8999999988  9999999998   67788887 55  88999999999999999999 99999999999 577776551


Q ss_pred             cCCCCcCCCCcceEEEEEcC----CCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCc-----------cc
Q 014005          258 MKPSNMDDLTEVITSAEFHP----IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK-----------SF  322 (432)
Q Consensus       258 ~~~~~~~~~~~~v~~~~~~p----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~-----------~~  322 (432)
                            ..|...|++++|+|    ++ .+|++|+.||.|++||+++++.    +..+.+|...+...           ..
T Consensus       254 ------~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~  322 (437)
T 3gre_A          254 ------FGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHC----QYAFINSDEQPSMEHFLPIEKGLEELN  322 (437)
T ss_dssp             ------CTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEE----EEEEESSSSCCCGGGGSCBCSSGGGCC
T ss_pred             ------cCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcE----EEEEEcCCCCCccceecccccccccce
Confidence                  26777899996665    56 7999999999999999998875    56676653211111           01


Q ss_pred             eee--eecceeEEEEcCCCCEEEEee-CCeEEEEec---CcceeEeec
Q 014005          323 FTE--IIASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMTLSFC  364 (432)
Q Consensus       323 ~~~--~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~~~  364 (432)
                      +.+  |...|.+++|+ ++++|++|+ |+.|++||+   +.+..+..|
T Consensus       323 ~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  369 (437)
T 3gre_A          323 FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISP  369 (437)
T ss_dssp             CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred             ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecc
Confidence            222  67889999999 788999975 599999999   555666543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-35  Score=273.74  Aligned_cols=269  Identities=13%  Similarity=0.106  Sum_probs=216.6

Q ss_pred             hccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccc
Q 014005            7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST   86 (432)
Q Consensus         7 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (432)
                      .+.....|++...-. ......+.|...|++++|+|++++|++|+.||.|++|++.....                    
T Consensus        43 ~d~~v~iw~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~--------------------  101 (416)
T 2pm9_A           43 TDSSLELWSLLAADS-EKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN--------------------  101 (416)
T ss_dssp             CCCCCEEEESSSGGG-CSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS--------------------
T ss_pred             CCCeEEEEEccCCCC-CcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc--------------------
Confidence            344566777663211 12344567899999999999999999999999999999987321                    


Q ss_pred             ccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcc------ee-eeeecCCC
Q 014005           87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQK------VK-KIKEMDHF  158 (432)
Q Consensus        87 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~------~~-~~~~~~~~  158 (432)
                         .......+.+|.            ..|.+++|  +|+ +++|++++.|+.|++||+.+++      .. .......+
T Consensus       102 ---~~~~~~~~~~h~------------~~v~~~~~--~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  164 (416)
T 2pm9_A          102 ---AINSMARFSNHS------------SSVKTVKF--NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS  164 (416)
T ss_dssp             ---CCCEEEECCCSS------------SCCCEEEE--CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred             ---cccchhhccCCc------------cceEEEEE--cCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence               012446788898            99999999  887 8899999999999999998765      11 11122233


Q ss_pred             CccccccccccccccccccCCCC-CcceecceeeccceEEEEeecccccceeeEEeecCC------CCCeeEEEeCCCC-
Q 014005          159 PFVSSENTLLAEKNFMNEHNPPS-FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAH------DFNINSISNNSDC-  230 (432)
Q Consensus       159 ~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~-  230 (432)
                      .           ..+.+++|+|+ +..+++++.  ++.+++||++   ..+++..+ ..+      ...|.+++|+|++ 
T Consensus       165 ~-----------~~v~~~~~~~~~~~~l~~~~~--dg~v~iwd~~---~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~  227 (416)
T 2pm9_A          165 V-----------DEVISLAWNQSLAHVFASAGS--SNFASIWDLK---AKKEVIHL-SYTSPNSGIKQQLSVVEWHPKNS  227 (416)
T ss_dssp             S-----------CCCCEEEECSSCTTEEEEESS--SSCEEEEETT---TTEEEEEE-CCCCCSSCCCCCEEEEEECSSCT
T ss_pred             C-----------CCeeEEEeCCCCCcEEEEEcC--CCCEEEEECC---CCCcceEE-eccccccccCCceEEEEECCCCC
Confidence            3           78999999999 778888888  9999999998   66777777 444      7889999999997 


Q ss_pred             CEEEEE-cCC---eEEEEeCCCCCceeeEeecCCCCcC-CCCcceEEEEEcC-CCCcEEEEEeCCCeEEEEEcccccccc
Q 014005          231 ETFVSA-DDL---RINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCD  304 (432)
Q Consensus       231 ~~l~~~-~d~---~i~lwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~  304 (432)
                      .+++++ .|+   .|++||++........+       . +|...|++++|+| ++ ++|++++.||.|++||+++++.  
T Consensus       228 ~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~~--  297 (416)
T 2pm9_A          228 TRVATATGSDNDPSILIWDLRNANTPLQTL-------NQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAEQ--  297 (416)
T ss_dssp             TEEEEEECCSSSCCCCEEETTSTTSCSBCC-------CSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCCE--
T ss_pred             CEEEEEECCCCCceEEEEeCCCCCCCcEEe-------ecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCcc--
Confidence            578888 888   99999999433444433       6 8999999999999 77 9999999999999999998876  


Q ss_pred             ccceeecccccccCCccceeeeecceeEEEEcCCC-CEEEEee-CCeEEEEec
Q 014005          305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       305 ~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~s~~-~~~i~iwd~  355 (432)
                        +..+..|             ...|.+++|+|++ ++|++++ |+.|++||+
T Consensus       298 --~~~~~~~-------------~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~  335 (416)
T 2pm9_A          298 --LSQFPAR-------------GNWCFKTKFAPEAPDLFACASFDNKIEVQTL  335 (416)
T ss_dssp             --EEEEECS-------------SSCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred             --ceeecCC-------------CCceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence              6778886             7899999999999 8999975 599999999

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.2e-33  Score=253.06  Aligned_cols=261  Identities=11%  Similarity=0.196  Sum_probs=212.3

Q ss_pred             hccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccc
Q 014005            7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST   86 (432)
Q Consensus         7 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (432)
                      .+.....|.+..   .+.......|...|.+++|+|++++|++|+.|+.|++||+++++                     
T Consensus        43 ~dg~i~iw~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---------------------   98 (312)
T 4ery_A           43 ADKLIKIWGAYD---GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK---------------------   98 (312)
T ss_dssp             TTSCEEEEETTT---CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---------------------
T ss_pred             CCCeEEEEeCCC---cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc---------------------
Confidence            344455665532   11122334688999999999999999999999999999998765                     


Q ss_pred             ccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccc
Q 014005           87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT  166 (432)
Q Consensus        87 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  166 (432)
                            ++..+.+|.            ..|.+++|  +|++++|++++.|+.|++||+.+++..  ..+..+.       
T Consensus        99 ------~~~~~~~~~------------~~v~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~-------  149 (312)
T 4ery_A           99 ------CLKTLKGHS------------NYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS-------  149 (312)
T ss_dssp             ------EEEEEECCS------------SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTCCEE--EEECCCS-------
T ss_pred             ------EEEEEcCCC------------CCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCEEE--EEecCCC-------
Confidence                  346788998            99999999  899999999999999999999887633  2333444       


Q ss_pred             cccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEe
Q 014005          167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN  245 (432)
Q Consensus       167 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd  245 (432)
                          ..+.+++|++++.++++++.  ++.+++||++   ..+++..+...+...+..++|+|++++++++ .|+.|++||
T Consensus       150 ----~~v~~~~~~~~~~~l~~~~~--d~~i~~wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd  220 (312)
T 4ery_A          150 ----DPVSAVHFNRDGSLIVSSSY--DGLCRIWDTA---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  220 (312)
T ss_dssp             ----SCEEEEEECTTSSEEEEEET--TSCEEEEETT---TCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             ----CcEEEEEEcCCCCEEEEEeC--CCcEEEEECC---CCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence                67999999999999999988  9999999998   5666666645677789999999999999999 999999999


Q ss_pred             CCCCCceeeEeecCCCCcCCCCcce--EEEEEc-CCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccc
Q 014005          246 LEISDQCFNIVDMKPSNMDDLTEVI--TSAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF  322 (432)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~-p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~  322 (432)
                      ++ .++.+..+       .+|...+  ....++ +++ .+|++|+.||.|++||+++++.    +..+.+|         
T Consensus       221 ~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~----~~~~~~h---------  278 (312)
T 4ery_A          221 YS-KGKCLKTY-------TGHKNEKYCIFANFSVTGG-KWIVSGSEDNLVYIWNLQTKEI----VQKLQGH---------  278 (312)
T ss_dssp             TT-TTEEEEEE-------CSSCCSSSCCCEEEECSSS-CEEEECCTTSCEEEEETTTCCE----EEEECCC---------
T ss_pred             CC-CCcEEEEE-------EecCCceEEEEEEEEeCCC-cEEEEECCCCEEEEEECCCchh----hhhhhcc---------
Confidence            99 66666665       4554432  223444 555 8999999999999999998876    6888887         


Q ss_pred             eeeeecceeEEEEcCCCCEEEEee---CCeEEEEec
Q 014005          323 FTEIIASISDIKFANDGQHLLSRD---YMNLKVFRY  355 (432)
Q Consensus       323 ~~~~~~~v~~~~~s~dg~~l~s~~---~~~i~iwd~  355 (432)
                          ...|.+++|+|++++|++++   |++|++|+.
T Consensus       279 ----~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          279 ----TDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             ----SSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             ----CCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence                78999999999999999864   699999986

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.4e-33  Score=257.68  Aligned_cols=258  Identities=15%  Similarity=0.180  Sum_probs=202.9

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|.+.|++++|+|+|++||+|+.||.|++||+.++..                       ..+....+.+|.       
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----------------------~~~~~~~~~~~~-------   57 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-----------------------NWELSDSWRAHD-------   57 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-----------------------CEEEEEEEECCS-------
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-----------------------cceecceeccCC-------
Confidence            46899999999999999999999999999999987542                       124556788999       


Q ss_pred             hhhhhcceeEEEEEEcC--CCCEEEEEeCCCeEEEEEccCcce-------eeeeecCCCCccccccccccccccccccCC
Q 014005          109 SLEIEEKINRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQKV-------KKIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  179 (432)
                           ..|.+++|  +|  ++++|++++.||.|++||+..++.       .....+..+.           ..+.+++|+
T Consensus        58 -----~~v~~~~~--~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~  119 (351)
T 3f3f_A           58 -----SSIVAIDW--ASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK-----------GSLYSVKFA  119 (351)
T ss_dssp             -----SCEEEEEE--CCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS-----------SCEEEEEEC
T ss_pred             -----CcEEEEEE--cCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC-----------CceeEEEEc
Confidence                 99999999  66  699999999999999999987632       3344444455           789999999


Q ss_pred             CC--CcceecceeeccceEEEEeecccccceeeE------E---eecCCCCCeeEEEeCCC---CCEEEEE-cCCeEEEE
Q 014005          180 PS--FAHGYHLEWTENMATKIANVGNSVHARCQK------V---YPHAHDFNINSISNNSD---CETFVSA-DDLRINLW  244 (432)
Q Consensus       180 ~~--~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~------~---~~~~~~~~i~~~~~~~~---~~~l~~~-~d~~i~lw  244 (432)
                      |+  +.++++++.  ++.+++||++.........      .   ....|...+.+++|+|+   +..++++ .|+.+.+|
T Consensus       120 ~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~  197 (351)
T 3f3f_A          120 PAHLGLKLACLGN--DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQ  197 (351)
T ss_dssp             CGGGCSEEEEEET--TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEE
T ss_pred             CCCCCcEEEEecC--CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEE
Confidence            99  999999988  9999999987432111111      0   01267889999999997   8899999 89999777


Q ss_pred             eCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCC---cEEEEEeCCCeEEEEEcccccccc-----------------
Q 014005          245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC---NLLAYSSSRGFVRLVDMRQSALCD-----------------  304 (432)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~dg~i~iwd~~~~~~~~-----------------  304 (432)
                      +.. .+......     .+.+|...|++++|+|++.   ++|++|+.||.|++||++.+....                 
T Consensus       198 ~~~-~~~~~~~~-----~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  271 (351)
T 3f3f_A          198 RGK-DGKLHVAA-----KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSAD  271 (351)
T ss_dssp             ECT-TSCEEEEE-----ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------
T ss_pred             ccC-CCceeeee-----ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcc
Confidence            777 44432111     2378999999999999963   689999999999999998753110                 


Q ss_pred             -------------------------ccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005          305 -------------------------HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       305 -------------------------~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~  355 (432)
                                               ..+..+.+             |...|++++|+|+|++|++|+ ||.|++||+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  335 (351)
T 3f3f_A          272 VDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD-------------HNGEVWSVSWNLTGTILSSAGDDGKVRLWKA  335 (351)
T ss_dssp             -------------------CCSEEEEEEEEECT-------------TSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             cccccccccccccceeeeecccccccEEEEEec-------------ccccEEEEEEcCCCCEEEEecCCCcEEEEec
Confidence                                     01233344             478999999999999999975 599999999

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=261.39  Aligned_cols=256  Identities=14%  Similarity=0.220  Sum_probs=206.7

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      -.|.+.|++++|+|+|++||+|+.||.|+||++....                         .+....+.+|.       
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-------------------------~~~~~~~~~h~-------   55 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHE-------   55 (379)
T ss_dssp             EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-------------------------EEEEEEECCCS-------
T ss_pred             cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-------------------------ceeeeEecCCC-------
Confidence            4689999999999999999999999999999998542                         23456788999       


Q ss_pred             hhhhhcceeEEEEEEcCC--CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC--Ccc
Q 014005          109 SLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS--FAH  184 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~  184 (432)
                           ..|.+++|  +++  +++|++++.||.|++||+.+++.........+.           ..+.+++|+|+  +.+
T Consensus        56 -----~~v~~~~~--~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~  117 (379)
T 3jrp_A           56 -----GPVWRVDW--AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS-----------ASVNSVQWAPHEYGPL  117 (379)
T ss_dssp             -----SCEEEEEE--CCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-----------SCEEEEEECCGGGCSE
T ss_pred             -----CcEEEEEe--CCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC-----------cceEEEEeCCCCCCCE
Confidence                 99999999  655  899999999999999999988755555555555           78999999999  899


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-------------CCCEEEEE-cCCeEEEEeCCCCC
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-------------DCETFVSA-DDLRINLWNLEISD  250 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~-~d~~i~lwd~~~~~  250 (432)
                      +++++.  ++.+++||++.... .....+ ..|...|.+++|+|             ++..++++ .|+.|++||++...
T Consensus       118 l~~~~~--d~~i~v~d~~~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  193 (379)
T 3jrp_A          118 LLVASS--DGKVSVVEFKENGT-TSPIII-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  193 (379)
T ss_dssp             EEEEET--TSEEEEEECCTTSC-CCEEEE-ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT
T ss_pred             EEEecC--CCcEEEEecCCCCc-eeeEEe-cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC
Confidence            999988  99999999985422 233344 68999999999999             68999999 99999999998433


Q ss_pred             ceeeEeecCCCCcCCCCcceEEEEEcCC---CCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005          251 QCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (432)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  327 (432)
                      ......    ..+.+|...|++++|+|+   + ++|++++.||.|++||++++..... ...+..           ..+.
T Consensus       194 ~~~~~~----~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~-----------~~~~  256 (379)
T 3jrp_A          194 QTYVLE----STLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPWK-KTLLKE-----------EKFP  256 (379)
T ss_dssp             TEEEEE----EEECCCSSCEEEEEECCCCSSS-EEEEEEETTSCEEEEEESSTTSCCE-EEESSS-----------SCCS
T ss_pred             cceeeE----EEEecccCcEeEEEECCCCCCC-CeEEEEeCCCEEEEEeCCCCCccce-eeeecc-----------ccCC
Confidence            221111    123789999999999999   7 9999999999999999998642100 111111           0126


Q ss_pred             cceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          328 ASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       328 ~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                      ..|.+++|+|+|++|+++ .+|.|++||+
T Consensus       257 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          257 DVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             SCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             CcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence            789999999999999997 4599999999

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-34  Score=270.02  Aligned_cols=297  Identities=11%  Similarity=0.146  Sum_probs=225.5

Q ss_pred             cccCCCcEEEEEEcCCCC-EEEEe----------cccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeee
Q 014005           28 ELQDVDIVSAIEFDKTGD-YLAVG----------DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE   96 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~-~l~t~----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~   96 (432)
                      .+.+...|.+++|+|+|+ +|++|          +.|+.|+|||+.++...                        +....
T Consensus         8 ~l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~------------------------~~~~~   63 (416)
T 2pm9_A            8 KLAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE------------------------KPIAS   63 (416)
T ss_dssp             --CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC------------------------SCSCC
T ss_pred             hHhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC------------------------cEEEE
Confidence            345556899999999997 99999          88999999999876421                        01122


Q ss_pred             eecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCCCccccccccccccccc
Q 014005           97 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKNFM  174 (432)
Q Consensus        97 ~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~  174 (432)
                       ..|.            ..|.+++|  +|++++|++++.||.|++||+....  ......+..|.           ..|.
T Consensus        64 -~~~~------------~~v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~-----------~~v~  117 (416)
T 2pm9_A           64 -LQVD------------SKFNDLDW--SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHS-----------SSVK  117 (416)
T ss_dssp             -CCCS------------SCEEEEEE--CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSS-----------SCCC
T ss_pred             -EecC------------CceEEEEE--CCCCCeEEEEccCCeEEEeecccccccccchhhccCCc-----------cceE
Confidence             2466            89999999  8999999999999999999998721  12344444455           7899


Q ss_pred             cccCCCC-CcceecceeeccceEEEEeecccc------cceeeEEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEe
Q 014005          175 NEHNPPS-FAHGYHLEWTENMATKIANVGNSV------HARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWN  245 (432)
Q Consensus       175 ~~~~~~~-~~~~~~~~~~~~~~v~i~d~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd  245 (432)
                      +++|+|+ +.++++++.  ++.|++||+....      .......+ ..|...|.+++|+|+ +.+++++ .|+.|++||
T Consensus       118 ~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd  194 (416)
T 2pm9_A          118 TVKFNAKQDNVLASGGN--NGEIFIWDMNKCTESPSNYTPLTPGQS-MSSVDEVISLAWNQSLAHVFASAGSSNFASIWD  194 (416)
T ss_dssp             EEEECSSSTTBEEEECS--SSCEEBCBTTTTSSCTTTCCCBCCCCS-CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred             EEEEcCCCCCEEEEEcC--CCeEEEEECCCCccccccccccccccc-cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence            9999998 889999988  9999999998542      11112222 578899999999999 7889999 999999999


Q ss_pred             CCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC---eEEEEEccccccccccceeec-ccccccCCcc
Q 014005          246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILR-DAAESHGSKS  321 (432)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~-~h~~~~~~~~  321 (432)
                      ++ .++....+... ....+|...|++++|+|++..+|++++.|+   .|++||++++...   ...+. +|        
T Consensus       195 ~~-~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~~~~~~--------  261 (416)
T 2pm9_A          195 LK-AKKEVIHLSYT-SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQTLNQGH--------  261 (416)
T ss_dssp             TT-TTEEEEEECCC-CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBCCCSCC--------
T ss_pred             CC-CCCcceEEecc-ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEEeecCc--------
Confidence            99 56666655211 011234788999999999757999999998   9999999986432   46666 66        


Q ss_pred             ceeeeecceeEEEEcC-CCCEEEEee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceee-EEEEeec
Q 014005          322 FFTEIIASISDIKFAN-DGQHLLSRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCV-IYIITTL  395 (432)
Q Consensus       322 ~~~~~~~~v~~~~~s~-dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~  395 (432)
                           ...|.+++|+| ++++|++++ |+.|++||+   +++..+..|..           .+..+...... ..+++++
T Consensus       262 -----~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~~l~s~~  325 (416)
T 2pm9_A          262 -----QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN-----------WCFKTKFAPEAPDLFACAS  325 (416)
T ss_dssp             -----SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS-----------CCCCEEECTTCTTEEEECC
T ss_pred             -----cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC-----------ceEEEEECCCCCCEEEEEe
Confidence                 78999999999 899999975 599999999   56666766653           12222222222 4689999


Q ss_pred             ccceeeeeccC
Q 014005          396 YLINLSALSAG  406 (432)
Q Consensus       396 ~~~~i~~~~~~  406 (432)
                      .|+.|.+|+..
T Consensus       326 ~d~~i~iw~~~  336 (416)
T 2pm9_A          326 FDNKIEVQTLQ  336 (416)
T ss_dssp             SSSEEEEEESC
T ss_pred             cCCcEEEEEcc
Confidence            99999999943

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-33  Score=264.26  Aligned_cols=290  Identities=16%  Similarity=0.132  Sum_probs=221.1

Q ss_pred             CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      |.+.|++++|+|+|++|++|+.||.|++||. +++                           ....+.+|.         
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~---------------------------~~~~~~~~~---------  149 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGA---------------------------LLNVLNFHR---------  149 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSC---------------------------EEEEECCCC---------
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCC---------------------------eeeeccCCC---------
Confidence            6779999999999999999999999999993 322                           346788898         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCc--cccccccccccccccccCCCCCcceecc
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF--VSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                         ..|.+++|  +|++++|++++.|+.|++||+.+++............  ............+.++.|++++. ++.+
T Consensus       150 ---~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  223 (425)
T 1r5m_A          150 ---APIVSVKW--NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIP  223 (425)
T ss_dssp             ---SCEEEEEE--CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEEE
T ss_pred             ---ccEEEEEE--CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEE
Confidence               99999999  8999999999999999999998877443322211100  00000000111288888988765 5555


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      +.  ++.+++||+.   ..+....+ ..|...|.+++|+|++++++++ .|+.|++||++ .+.....+       ..|.
T Consensus       224 ~~--~g~i~~~d~~---~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~-------~~~~  289 (425)
T 1r5m_A          224 GP--KGAIFVYQIT---EKTPTGKL-IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG-NGNSQNCF-------YGHS  289 (425)
T ss_dssp             CG--GGCEEEEETT---CSSCSEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS-SBSCSEEE-------CCCS
T ss_pred             cC--CCeEEEEEcC---CCceeeee-ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC-CCccceEe-------cCCC
Confidence            55  8999999998   55677777 7899999999999999999999 99999999999 56666655       7788


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~  347 (432)
                      ..|.+++|+|++  ++++++.||.|++||+++++.    +..+..|             ...|.+++|+|+|++|++++.
T Consensus       290 ~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~----~~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~  350 (425)
T 1r5m_A          290 QSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTL----LALSIVD-------------GVPIFAGRISQDGQKYAVAFM  350 (425)
T ss_dssp             SCEEEEEEETTT--EEEEEETTSEEEEEETTTTEE----EEEEECT-------------TCCEEEEEECTTSSEEEEEET
T ss_pred             ccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcE----eEecccC-------------CccEEEEEEcCCCCEEEEEEC
Confidence            999999999987  889999999999999998776    5777776             679999999999999999854


Q ss_pred             -CeEEEEec---C--------------------cceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeee
Q 014005          348 -MNLKVFRY---E--------------------PVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSAL  403 (432)
Q Consensus       348 -~~i~iwd~---~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~  403 (432)
                       +.|++||+   .                    ++..+..|..         ...+..+.......++++|+.||.|.+|
T Consensus       351 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~~dg~i~iw  421 (425)
T 1r5m_A          351 DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD---------NDYIFDLSWNCAGNKISVAYSLQEGSVV  421 (425)
T ss_dssp             TSCEEEEECHHHHC--------------CEECCEEEEECCTTC---------CCCEEEEEECTTSSEEEEEESSSCCEEE
T ss_pred             CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc---------CCceEEEEccCCCceEEEEecCceEEEE
Confidence             99999999   3                    3444444321         0022222222222268899999999999


Q ss_pred             cc
Q 014005          404 SA  405 (432)
Q Consensus       404 ~~  405 (432)
                      +.
T Consensus       422 ~~  423 (425)
T 1r5m_A          422 AI  423 (425)
T ss_dssp             EC
T ss_pred             ee
Confidence            83

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.8e-34  Score=268.29  Aligned_cols=276  Identities=14%  Similarity=0.100  Sum_probs=215.3

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      .+++++|+|+|++|++|+.||.|++||+.+.+..                           ..+..|             
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~---------------------------~~~~~~-------------   97 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS---------------------------KMLKRA-------------   97 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETT---------------------------TTSCSC-------------
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEeccccee---------------------------eEEecC-------------
Confidence            4557999999999999999999999999876532                           222233             


Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      ..+....|  ++++++|++++.||.|++||+.+++...  .+..|.           +.|.+++|+|++.++++++.  |
T Consensus        98 ~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~h~-----------~~v~~~~~~~~~~~l~s~s~--d  160 (420)
T 3vl1_A           98 DYTAVDTA--KLQMRRFILGTTEGDIKVLDSNFNLQRE--IDQAHV-----------SEITKLKFFPSGEALISSSQ--D  160 (420)
T ss_dssp             CEEEEEEE--CSSSCEEEEEETTSCEEEECTTSCEEEE--ETTSSS-----------SCEEEEEECTTSSEEEEEET--T
T ss_pred             CceEEEEE--ecCCCEEEEEECCCCEEEEeCCCcceee--eccccc-----------CccEEEEECCCCCEEEEEeC--C
Confidence            23334456  8999999999999999999998876433  334455           78999999999999999998  9


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC-----
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-----  267 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~-----  267 (432)
                      +.|++||+.   ..+++..+ .+|...|.+++|+|++++|+++ .|+.|++||++ .++....+...    ..+.     
T Consensus       161 ~~i~iwd~~---~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~----~~~~~~v~~  231 (420)
T 3vl1_A          161 MQLKIWSVK---DGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG-TGTTIHTFNRK----ENPHDGVNS  231 (420)
T ss_dssp             SEEEEEETT---TCCCCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TTEEEEEECBT----TBTTCCEEE
T ss_pred             CeEEEEeCC---CCcCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC-CCceeEEeecC----CCCCCCccE
Confidence            999999998   66777778 7899999999999999999999 99999999999 66776665211    1233     


Q ss_pred             ----------------cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee-cccccccCCccceeeeecce
Q 014005          268 ----------------EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASI  330 (432)
Q Consensus       268 ----------------~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~~v  330 (432)
                                      ..+.+++|+|++ ++|++|+.||.|++||+++++.    ...+ ..|             ...|
T Consensus       232 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~-------------~~~v  293 (420)
T 3vl1_A          232 IALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQ----TIQLPSKF-------------TCSC  293 (420)
T ss_dssp             EEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCE----EEEECCTT-------------SSCE
T ss_pred             EEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCce----eEEccccc-------------CCCc
Confidence                            344455567888 9999999999999999998775    2333 344             6789


Q ss_pred             eEEEEcCCCC-EEEEeeC-CeEEEEec----CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          331 SDIKFANDGQ-HLLSRDY-MNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       331 ~~~~~s~dg~-~l~s~~~-~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      .+++|+|+++ +|++|+. |.|++||+    .++..+..+..          ..+..++..+ ..++++|+.|+.+.+|+
T Consensus       294 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~----------~~v~~~~~~~-~~~l~s~~~d~~v~iw~  362 (420)
T 3vl1_A          294 NSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG----------TPINNVYFAA-GALFVSSGFDTSIKLDI  362 (420)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT----------SCEEEEEEET-TEEEEEETTTEEEEEEE
T ss_pred             eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC----------CCceEEEeCC-CCEEEEecCCccEEEEe
Confidence            9999999998 8998755 99999999    34666666431          1222222222 23689999999999999

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.8e-33  Score=248.85  Aligned_cols=273  Identities=15%  Similarity=0.145  Sum_probs=216.9

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|.+.|++++| |++++|++|+.||.|++||+.+++                           ....+..|.       
T Consensus        15 ~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~---------------------------~~~~~~~~~-------   59 (313)
T 3odt_A           15 KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW---------------------------LGTVVYTGQ-------   59 (313)
T ss_dssp             CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE---------------------------EEEEEEECS-------
T ss_pred             hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE---------------------------EEEEeecCC-------
Confidence            468999999999 999999999999999999997764                           336677888       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc-eeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                           ..|.+++|  +|+++++++++.|+.|++|++.... ......+..+.           ..+.++.|  ++.++++
T Consensus        60 -----~~v~~~~~--~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~-----------~~i~~~~~--~~~~l~~  119 (313)
T 3odt_A           60 -----GFLNSVCY--DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQ-----------GNVCSLSF--QDGVVIS  119 (313)
T ss_dssp             -----SCEEEEEE--ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCS-----------SCEEEEEE--ETTEEEE
T ss_pred             -----ccEEEEEE--CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcc-----------cCEEEEEe--cCCEEEE
Confidence                 99999999  8899999999999999999997653 22233334444           67888888  5678888


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      ++.  ++.+++||     .......+ ..|...+.++++.| +++.++++ .|+.|++||..   .....+       ..
T Consensus       120 ~~~--d~~i~~~d-----~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~-------~~  181 (313)
T 3odt_A          120 GSW--DKTAKVWK-----EGSLVYNL-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKTF-------SG  181 (313)
T ss_dssp             EET--TSEEEEEE-----TTEEEEEE-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEE-------CS
T ss_pred             EeC--CCCEEEEc-----CCcEEEec-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEE-------ec
Confidence            888  99999999     33555666 68999999999988 89999999 99999999954   344443       34


Q ss_pred             -CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          266 -LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       266 -~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                       |...+.+++|+|++ . +++++.||.|++||+++++.    +..+..|             ...|.+++|+|+|+ |++
T Consensus       182 ~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~----~~~~~~~-------------~~~i~~~~~~~~~~-l~~  241 (313)
T 3odt_A          182 IHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDV----LRTYEGH-------------ESFVYCIKLLPNGD-IVS  241 (313)
T ss_dssp             SCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCCE----EEEEECC-------------SSCEEEEEECTTSC-EEE
T ss_pred             cCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchhh----hhhhhcC-------------CceEEEEEEecCCC-EEE
Confidence             88899999999998 6 89999999999999998876    6778876             78999999999995 555


Q ss_pred             e-eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005          345 R-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       345 ~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                      + .++.|++||+   +++..+..|..           .+..+...... .+++|+.||.|.+|+..
T Consensus       242 ~~~dg~v~iwd~~~~~~~~~~~~~~~-----------~i~~~~~~~~~-~~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          242 CGEDRTVRIWSKENGSLKQVITLPAI-----------SIWSVDCMSNG-DIIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             EETTSEEEEECTTTCCEEEEEECSSS-----------CEEEEEECTTS-CEEEEETTSCEEEEESC
T ss_pred             EecCCEEEEEECCCCceeEEEeccCc-----------eEEEEEEccCC-CEEEEeCCCcEEEEeCC
Confidence            4 6699999999   56666666543           12211111111 15678899999999954

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.1e-33  Score=257.72  Aligned_cols=241  Identities=11%  Similarity=0.112  Sum_probs=189.3

Q ss_pred             cCCCcEEEEEEcCCCCEE-EEecc---cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           30 QDVDIVSAIEFDKTGDYL-AVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l-~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      .|.+.|++++|+|+++.+ ++|+.   ||.|+|||+.+++..                         . ....+|.    
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~-------------------------~-~~~~~~~----   65 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK-------------------------L-LREIEKA----   65 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE-------------------------E-EEEEEES----
T ss_pred             CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc-------------------------c-eeeeccc----
Confidence            488999999999999654 56665   999999999886532                         1 1223677    


Q ss_pred             ccchhhhhcceeEEEEEEcCC---CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccc------
Q 014005          106 YLKSLEIEEKINRVRWCAAPN---GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE------  176 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------  176 (432)
                              ..|.+++|  +|+   +.+|++++.||.|++||+.+++. ....+..+.           ..|.++      
T Consensus        66 --------~~v~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~-----------~~v~~~~~~~~~  123 (357)
T 3i2n_A           66 --------KPIKCGTF--GATSLQQRYLATGDFGGNLHIWNLEAPEM-PVYSVKGHK-----------EIINAIDGIGGL  123 (357)
T ss_dssp             --------SCEEEEEC--TTCCTTTCCEEEEETTSCEEEECTTSCSS-CSEEECCCS-----------SCEEEEEEESGG
T ss_pred             --------CcEEEEEE--cCCCCCCceEEEecCCCeEEEEeCCCCCc-cEEEEEecc-----------cceEEEeecccc
Confidence                    89999999  887   69999999999999999987751 122233343           567766      


Q ss_pred             cCCCCCcceecceeeccceEEEEeecccccce-eeEEeecCCC----CCeeEEE----eCCCCCEEEEE-cCCeEEEEeC
Q 014005          177 HNPPSFAHGYHLEWTENMATKIANVGNSVHAR-CQKVYPHAHD----FNINSIS----NNSDCETFVSA-DDLRINLWNL  246 (432)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~-~~~~~~~~~~----~~i~~~~----~~~~~~~l~~~-~d~~i~lwd~  246 (432)
                      +|++++.++++++.  ++.+++||++.   .. +...+ ..|.    ..+.+++    |+|++++++++ .|+.|++||+
T Consensus       124 ~~s~~~~~l~~~~~--d~~i~vwd~~~---~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (357)
T 3i2n_A          124 GIGEGAPEIVTGSR--DGTVKVWDPRQ---KDDPVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDL  197 (357)
T ss_dssp             GCC-CCCEEEEEET--TSCEEEECTTS---CSSCSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEET
T ss_pred             ccCCCccEEEEEeC--CCeEEEEeCCC---CCCcceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEEC
Confidence            77899999999988  99999999984   33 45555 3333    3788888    78999999999 9999999999


Q ss_pred             CCCCceeeEeecCCCCcCCCCcceEEEEEcC---CCCcEEEEEeCCCeEEEEEccccccccccceeec-----ccccccC
Q 014005          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHP---IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR-----DAAESHG  318 (432)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~h~~~~~  318 (432)
                      + ..+....        ..|...|.+++|+|   ++ .+|++++.||.|++||+++++.    ...+.     +|     
T Consensus       198 ~-~~~~~~~--------~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~-----  258 (357)
T 3i2n_A          198 R-NMALRWE--------TNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHP----TKGFASVSEKAH-----  258 (357)
T ss_dssp             T-TTEEEEE--------EECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEET----TTEEEEEEEECC-----
T ss_pred             c-cCceeee--------cCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCc----ccceeeeccCCC-----
Confidence            9 4544332        56778899999999   88 9999999999999999998765    33333     55     


Q ss_pred             CccceeeeecceeEEEEcCCCC-EEEEee-CCeEEEEec
Q 014005          319 SKSFFTEIIASISDIKFANDGQ-HLLSRD-YMNLKVFRY  355 (432)
Q Consensus       319 ~~~~~~~~~~~v~~~~~s~dg~-~l~s~~-~~~i~iwd~  355 (432)
                              ...|.+++|+|+++ +|++|+ +|.|++||+
T Consensus       259 --------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~  289 (357)
T 3i2n_A          259 --------KSTVWQVRHLPQNRELFLTAGGAGGLHLWKY  289 (357)
T ss_dssp             --------SSCEEEEEEETTEEEEEEEEETTSEEEEEEE
T ss_pred             --------cCCEEEEEECCCCCcEEEEEeCCCcEEEeec
Confidence                    78999999999998 788875 499999999

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3e-33  Score=255.33  Aligned_cols=294  Identities=10%  Similarity=0.034  Sum_probs=219.3

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .|.+.|++++|+|++++|++|+.||.|+||++.++..                        ......+.+|.        
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~------------------------~~~~~~~~~~~--------   56 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK------------------------NVDLLQSLRYK--------   56 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT------------------------EEEEEEEEECS--------
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc------------------------cccceeeeecC--------
Confidence            6889999999999999999999999999999987651                        11224556788        


Q ss_pred             hhhhcceeEEEEEEcCCCC-EEEEEeCCCeEEEEEc-cCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          110 LEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                          ..|.+++|  +|+++ +|++++.||.|++||+ .+++...+... .+.           ..|.+++|++ +..+++
T Consensus        57 ----~~v~~~~~--~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~-----------~~v~~l~~~~-~~~l~s  117 (342)
T 1yfq_A           57 ----HPLLCCNF--IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN-EAN-----------LGICRICKYG-DDKLIA  117 (342)
T ss_dssp             ----SCEEEEEE--EESSSEEEEEEETTSCEEEECSSSSSSEEECBSC-CCC-----------SCEEEEEEET-TTEEEE
T ss_pred             ----CceEEEEE--CCCCCcEEEEEcCCCeEEEEEeccCCceEecccc-CCC-----------CceEEEEeCC-CCEEEE
Confidence                89999999  77899 9999999999999999 87765333220 034           7899999999 999999


Q ss_pred             ceeeccceEEEEeeccccc------ceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCC-CCceeeEeecC
Q 014005          188 LEWTENMATKIANVGNSVH------ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI-SDQCFNIVDMK  259 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~-~~~~~~~~~~~  259 (432)
                      ++.  ++.+++||++....      .+++..+  .|...+.+++|+|++  ++++ .|+.|++||++. ........   
T Consensus       118 ~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~---  188 (342)
T 1yfq_A          118 ASW--DGLIEVIDPRNYGDGVIAVKNLNSNNT--KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE---  188 (342)
T ss_dssp             EET--TSEEEEECHHHHTTBCEEEEESCSSSS--SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEE---
T ss_pred             EcC--CCeEEEEcccccccccccccCCeeeEE--eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceee---
Confidence            888  99999999982000      4555555  388899999999988  7777 999999999994 22222211   


Q ss_pred             CCCcCCCCcceEEEEEcC-CCCcEEEEEeCCCeEEEEEcccc--ccccccceeecccccccCCccceeeeecceeEEEEc
Q 014005          260 PSNMDDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQS--ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (432)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s  336 (432)
                         ...|...+++++|+| ++ ++|++++.||.|++||++..  ....+....+..|.....    ..++...|.+++|+
T Consensus       189 ---~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~s  260 (342)
T 1yfq_A          189 ---ESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK----DTNLAYPVNSIEFS  260 (342)
T ss_dssp             ---ECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT----CCSSCCCEEEEEEC
T ss_pred             ---ecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccc----ccccceeEEEEEEc
Confidence               256778899999999 98 99999999999999999876  111112567777511100    01123489999999


Q ss_pred             CCCCEEEEeeC-CeEEEEec---CcceeEeec-ceeeeehhhhhcccccccccceeeEEEEeecccce-eeeec
Q 014005          337 NDGQHLLSRDY-MNLKVFRY---EPVMTLSFC-GIYVWILRQLQHSRFMSIYALSCVIYIITTLYLIN-LSALS  404 (432)
Q Consensus       337 ~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~  404 (432)
                      |++++|++++. |.|++||+   +++..+..| ..           .+..+.  ....++++|+.||. ...+.
T Consensus       261 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-----------~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          261 PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED-----------SVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             TTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS-----------EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             CCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC-----------CceEec--CCCCeEEEEecCCccccccc
Confidence            99999999854 99999999   455555554 32           222222  22336889999998 55444

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-33  Score=261.57  Aligned_cols=291  Identities=12%  Similarity=0.128  Sum_probs=217.5

Q ss_pred             CccccCCCcEEEEEEcCCCC-EEEEecccceEEEEEe----cCCcCCCCccccchhhhccccccccccCCcceeeee---
Q 014005           26 DEELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFET----VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF---   97 (432)
Q Consensus        26 ~~~~~h~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---   97 (432)
                      .....|.+.|++++|+|+|+ +||+|+.||.|++|++    .+++...       .+.          +.......+   
T Consensus        39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------~~~----------~~~~~~~~~~~~  101 (425)
T 1r5m_A           39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYW-------KLT----------IIAELRHPFALS  101 (425)
T ss_dssp             CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CE-------EEE----------EEEEEECCCCCC
T ss_pred             eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccc-------ccc----------cccccccccccc
Confidence            33456678999999999999 9999999999999999    6655200       000          000011111   


Q ss_pred             ---ecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccc
Q 014005           98 ---QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (432)
Q Consensus        98 ---~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  174 (432)
                         .+|.            ..|.+++|  +|++++|++++.||.|++||.......   .+..+.           ..+.
T Consensus       102 ~~~~~~~------------~~v~~~~~--s~~~~~l~~~~~dg~i~i~~~~~~~~~---~~~~~~-----------~~v~  153 (425)
T 1r5m_A          102 ASSGKTT------------NQVTCLAW--SHDGNSIVTGVENGELRLWNKTGALLN---VLNFHR-----------APIV  153 (425)
T ss_dssp             ------C------------BCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCEEE---EECCCC-----------SCEE
T ss_pred             ccccCCC------------CceEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCeee---eccCCC-----------ccEE
Confidence               2245            79999999  899999999999999999994433322   233344           7899


Q ss_pred             cccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCC---------------eeEEEeCCCCCEEEEE-cC
Q 014005          175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFN---------------INSISNNSDCETFVSA-DD  238 (432)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~---------------i~~~~~~~~~~~l~~~-~d  238 (432)
                      +++|+|++.++++++.  ++.+++||+.   ..+.+..+ ..+...               +.+++|+|++ .++++ .|
T Consensus       154 ~~~~~~~~~~l~~~~~--d~~i~iwd~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  226 (425)
T 1r5m_A          154 SVKWNKDGTHIISMDV--ENVTILWNVI---SGTVMQHF-ELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPK  226 (425)
T ss_dssp             EEEECTTSSEEEEEET--TCCEEEEETT---TTEEEEEE-CCC---------------CCCBSCCEEEETT-EEEEECGG
T ss_pred             EEEECCCCCEEEEEec--CCeEEEEECC---CCcEEEEe-eccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCC
Confidence            9999999999999988  9999999998   66777777 555555               9999999986 46666 99


Q ss_pred             CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccC
Q 014005          239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG  318 (432)
Q Consensus       239 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~  318 (432)
                      +.|++||++ .+.....+       ..|...|.+++|+|++ ++|++++.||.|++||+++++.    ...+..|     
T Consensus       227 g~i~~~d~~-~~~~~~~~-------~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~-----  288 (425)
T 1r5m_A          227 GAIFVYQIT-EKTPTGKL-------IGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNS----QNCFYGH-----  288 (425)
T ss_dssp             GCEEEEETT-CSSCSEEE-------CCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSC----SEEECCC-----
T ss_pred             CeEEEEEcC-CCceeeee-------ccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCcc----ceEecCC-----
Confidence            999999999 55666555       7889999999999999 8999999999999999998775    5777776     


Q ss_pred             CccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEee
Q 014005          319 SKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITT  394 (432)
Q Consensus       319 ~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  394 (432)
                              ...|.+++|+|++ +|+++ .++.|++||+   +++..+..|..           .+..+.......++++|
T Consensus       289 --------~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----------~i~~~~~s~~~~~l~~~  348 (425)
T 1r5m_A          289 --------SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV-----------PIFAGRISQDGQKYAVA  348 (425)
T ss_dssp             --------SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC-----------CEEEEEECTTSSEEEEE
T ss_pred             --------CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc-----------cEEEEEEcCCCCEEEEE
Confidence                    7899999999999 77776 4599999999   45555554432           22222222222368889


Q ss_pred             cccceeeeeccC
Q 014005          395 LYLINLSALSAG  406 (432)
Q Consensus       395 ~~~~~i~~~~~~  406 (432)
                      +.||.|.+|+..
T Consensus       349 ~~dg~i~i~~~~  360 (425)
T 1r5m_A          349 FMDGQVNVYDLK  360 (425)
T ss_dssp             ETTSCEEEEECH
T ss_pred             ECCCeEEEEECC
Confidence            999999999943

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.6e-32  Score=252.69  Aligned_cols=299  Identities=7%  Similarity=0.065  Sum_probs=209.3

Q ss_pred             CCcEEEEEEcCCCCEEEEeccc-------ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRG-------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~  104 (432)
                      .-+|+|++|+|+|++|++|+.|       +.|++|+++.....     ....+..            .....+.+|.   
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~-----~~~~~~~------------~~~~~l~~~~---   73 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDT-----EKEQFHI------------LSEFALEDND---   73 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSS-----HHHHEEE------------EEEEECCTTS---
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcc-----eeeeeee------------eeEEEccCCC---
Confidence            3479999999999999998643       36999999876432     0000000            0112456677   


Q ss_pred             cccchhhhhcceeEEEEEEcCCCCEEEEE-----------eCCCeEEEEEccCcc--eeeeeecCCCCcccccccccccc
Q 014005          105 DYLKSLEIEEKINRVRWCAAPNGSMFILS-----------TNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEK  171 (432)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~-----------~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  171 (432)
                               ..|.++++    ++..+++|           +.|+.+++|++....  ...........      ....+.
T Consensus        74 ---------~~v~s~~~----~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~------~~~~~~  134 (365)
T 4h5i_A           74 ---------DSPTAIDA----SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDA------STNADD  134 (365)
T ss_dssp             ---------CCCCEEEE----ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSC------CCCTTC
T ss_pred             ---------CceEEEEe----CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceee------cCCccc
Confidence                     77888877    34556655           457889999987543  22222111110      011124


Q ss_pred             ccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCc
Q 014005          172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ  251 (432)
Q Consensus       172 ~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~  251 (432)
                      .++.++|+|++++++.++...|+.|++||++   +.+++..+  .|...|.+++|+|+|++++++.++.+.+|+.. .+.
T Consensus       135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~---~~~~~~~~--~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~-~~~  208 (365)
T 4h5i_A          135 YTKLVYISREGTVAAIASSKVPAIMRIIDPS---DLTEKFEI--ETRGEVKDLHFSTDGKVVAYITGSSLEVISTV-TGS  208 (365)
T ss_dssp             CEEEEEECTTSSCEEEEESCSSCEEEEEETT---TTEEEEEE--ECSSCCCEEEECTTSSEEEEECSSCEEEEETT-TCC
T ss_pred             CEEEEEEcCCCCEEEEEECCCCCEEEEeECC---CCcEEEEe--CCCCceEEEEEccCCceEEeccceeEEEEEec-cCc
Confidence            5778999999999887665448999999998   67777776  47788999999999999999955566677666 344


Q ss_pred             eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC----eEEEEEccccccccccceeecccccccCCccceeeee
Q 014005          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (432)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  327 (432)
                      .....     ....|...|++++|+|++ +.+++++.|+    .+++||+..+.........+.+|             .
T Consensus       209 ~~~~~-----~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------------~  269 (365)
T 4h5i_A          209 CIARK-----TDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR-------------F  269 (365)
T ss_dssp             EEEEE-----CCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS-------------C
T ss_pred             ceeee-----ecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeeecCC-------------C
Confidence            33221     236788899999999999 9999999887    68899988655321113445555             7


Q ss_pred             cceeEEEEcCCCCEEEEeeC-CeEEEEec---CcceeE-eecceeeeehhhhhcccccccccceeeEEEEeecccceeee
Q 014005          328 ASISDIKFANDGQHLLSRDY-MNLKVFRY---EPVMTL-SFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSA  402 (432)
Q Consensus       328 ~~v~~~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~  402 (432)
                      ..|++++|+|||++||+|+. ++|+|||+   +++.++ +.|..           .+..+.++....++++|+.|++|+|
T Consensus       270 ~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~-----------~V~~v~fSpdg~~laS~S~D~tvrv  338 (365)
T 4h5i_A          270 KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSF-----------AITEVTISPDSTYVASVSAANTIHI  338 (365)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSS-----------CEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccC-----------CEEEEEECCCCCEEEEEeCCCeEEE
Confidence            89999999999999999854 99999999   455554 44543           3333333334447999999999999


Q ss_pred             ecc
Q 014005          403 LSA  405 (432)
Q Consensus       403 ~~~  405 (432)
                      |+.
T Consensus       339 w~i  341 (365)
T 4h5i_A          339 IKL  341 (365)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            993

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.7e-32  Score=253.33  Aligned_cols=274  Identities=15%  Similarity=0.232  Sum_probs=204.4

Q ss_pred             ccCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        29 ~~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ..|.+.|++++|+| +|++||+|+.||.|++||+++++........       ..       .........+|.      
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------~~-------~~~~~~~~~~~~------   99 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK-------AV-------CSIGRDHPDVHR------   99 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC-------EE-------EEECTTCTTCCS------
T ss_pred             eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc-------cc-------ccccccccccCC------
Confidence            35899999999999 9999999999999999999987643110000       00       000000113477      


Q ss_pred             chhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC---CCc
Q 014005          108 KSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP---SFA  183 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~  183 (432)
                            ..|.+++|  +| ++.+|++++.||.|++||+.+++........              ..+..+.+.+   ++.
T Consensus       100 ------~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~  157 (408)
T 4a11_B          100 ------YSVETVQW--YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFE--------------ETVYSHHMSPVSTKHC  157 (408)
T ss_dssp             ------SCEEEEEE--CTTCTTCEEEEETTSEEEEEETTTTEEEEEEECS--------------SCEEEEEECSSCSSCC
T ss_pred             ------CcEEEEEE--ccCCCcEEEEEeCCCeEEEeeCCCCccceeccCC--------------CceeeeEeecCCCCCc
Confidence                  89999999  78 7789999999999999999988755544432              4566666666   445


Q ss_pred             ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecC--
Q 014005          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMK--  259 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~--  259 (432)
                      +++.+..  ++.+++||++   ...+...+ ..|...|.+++|+|+++ .++++ .|+.|++||++.....+..++..  
T Consensus       158 ~~~~~~~--~~~v~~~d~~---~~~~~~~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  231 (408)
T 4a11_B          158 LVAVGTR--GPKVQLCDLK---SGSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG  231 (408)
T ss_dssp             EEEEEES--SSSEEEEESS---SSCCCEEE-CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred             EEEEEcC--CCeEEEEeCC---Ccceeeee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc
Confidence            8888888  9999999998   66777777 78999999999999998 47788 99999999998544444443111  


Q ss_pred             ------CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccc-------------------
Q 014005          260 ------PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA-------------------  314 (432)
Q Consensus       260 ------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~-------------------  314 (432)
                            ......|...|++++|+|++ ++|++++.||.|++||+++++..    ..+..+.                   
T Consensus       232 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (408)
T 4a11_B          232 KKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENT----LVNYGKVCNNSKKGLKFTVSCGCSSE  306 (408)
T ss_dssp             CSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBC----CCCCCCCCCCCSSCCCCEECCSSSSC
T ss_pred             ccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccc----eeccccccccccccceeEEecCCCce
Confidence                  11225788999999999999 99999999999999999987642    1111100                   


Q ss_pred             ---------------cccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005          315 ---------------ESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       315 ---------------~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~  355 (432)
                                     ........+.+|...|.+++|+|+|++|++|+ ||.|++||+
T Consensus       307 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~  363 (408)
T 4a11_B          307 FVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVP  363 (408)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             EEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence                           00011123345688999999999999999985 599999999

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7e-32  Score=245.47  Aligned_cols=239  Identities=10%  Similarity=0.114  Sum_probs=203.3

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .|...|++++|+|++++|++++.||.|++||+++++.                         .....+.+|.        
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-------------------------~~~~~~~~~~--------  141 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP-------------------------RIKAELTSSA--------  141 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------------------------EEEEEEECSS--------
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc-------------------------ceeeecccCC--------
Confidence            6889999999999999999999999999999987642                         2335677888        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                          ..|.+++|  +|+++++++++.||.|++||+.+++...  .+..+.           ..+.+++|+|++.++++++
T Consensus       142 ----~~i~~~~~--~~~~~~l~~~~~dg~v~~~d~~~~~~~~--~~~~~~-----------~~i~~~~~~~~~~~l~~~~  202 (337)
T 1gxr_A          142 ----PACYALAI--SPDSKVCFSCCSDGNIAVWDLHNQTLVR--QFQGHT-----------DGASCIDISNDGTKLWTGG  202 (337)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEE--EECCCS-----------SCEEEEEECTTSSEEEEEE
T ss_pred             ----CceEEEEE--CCCCCEEEEEeCCCcEEEEeCCCCceee--eeeccc-----------CceEEEEECCCCCEEEEEe
Confidence                89999999  8999999999999999999998876333  333344           7899999999999999998


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      .  ++.+++||++   ..+....+  .+...+.+++|+|+++.++++ .|+.|++||++ ..... .+       ..|..
T Consensus       203 ~--dg~i~~~d~~---~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~-~~~~~-~~-------~~~~~  266 (337)
T 1gxr_A          203 L--DNTVRSWDLR---EGRQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN-KPDKY-QL-------HLHES  266 (337)
T ss_dssp             T--TSEEEEEETT---TTEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SSCEE-EE-------CCCSS
T ss_pred             c--CCcEEEEECC---CCceEeee--cCCCceEEEEECCCCCEEEEEcCCCcEEEEECC-CCCeE-EE-------cCCcc
Confidence            8  9999999998   56666665  477889999999999999999 99999999999 44433 22       68889


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-C
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~  347 (432)
                      .|.+++|+|++ ++|++++.||.|++||+++++.    .... .|             ...+.+++|+|++++|++++ +
T Consensus       267 ~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~----~~~~-~~-------------~~~v~~~~~s~~~~~l~~~~~d  327 (337)
T 1gxr_A          267 CVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGAS----IFQS-KE-------------SSSVLSCDISVDDKYIVTGSGD  327 (337)
T ss_dssp             CEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE----EEEE-EC-------------SSCEEEEEECTTSCEEEEEETT
T ss_pred             ceeEEEECCCC-CEEEEecCCCcEEEEECCCCeE----EEEe-cC-------------CCcEEEEEECCCCCEEEEecCC
Confidence            99999999999 9999999999999999998775    2222 33             57899999999999999975 4


Q ss_pred             CeEEEEec
Q 014005          348 MNLKVFRY  355 (432)
Q Consensus       348 ~~i~iwd~  355 (432)
                      |.|++||+
T Consensus       328 g~i~iw~~  335 (337)
T 1gxr_A          328 KKATVYEV  335 (337)
T ss_dssp             SCEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3e-33  Score=257.60  Aligned_cols=303  Identities=13%  Similarity=0.098  Sum_probs=217.1

Q ss_pred             cCCCcEEEEEEcCC----CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeec-----C
Q 014005           30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-----H  100 (432)
Q Consensus        30 ~h~~~V~~~~fsp~----g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-----h  100 (432)
                      .|.+.|++++|+|+    ...+++++.++.|++||+.+++..                           ..+..     |
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~---------------------------~~~~~~~~~~~   68 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI---------------------------RLLQSYVDADA   68 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE---------------------------EEEEEEECSCT
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE---------------------------EeeeeccccCC
Confidence            68999999999984    445666667779999999876532                           23332     4


Q ss_pred             CccccccchhhhhcceeEEEEEEcCC--CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccC
Q 014005          101 EPEFDYLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN  178 (432)
Q Consensus       101 ~~~~~~~~~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  178 (432)
                      .            ..|.+++|+|..+  +++|++|+.||.|++||+.+++...  .+..+.           ..|.+++|
T Consensus        69 ~------------~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~-----------~~i~~~~~  123 (366)
T 3k26_A           69 D------------ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK--HYVGHG-----------NAINELKF  123 (366)
T ss_dssp             T------------CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEE--EEESCC-----------SCEEEEEE
T ss_pred             C------------CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEee--eecCCC-----------CcEEEEEE
Confidence            4            7899999954221  6799999999999999999877433  333444           78999999


Q ss_pred             CC-CCcceecceeeccceEEEEeecccccceeeEEee--cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceee
Q 014005          179 PP-SFAHGYHLEWTENMATKIANVGNSVHARCQKVYP--HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN  254 (432)
Q Consensus       179 ~~-~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~  254 (432)
                      +| ++.++++++.  |+.|++||++   ..+....+.  ..|...|.+++|+|++++++++ .|+.|++||++ .++...
T Consensus       124 ~~~~~~~l~s~~~--dg~i~iwd~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~  197 (366)
T 3k26_A          124 HPRDPNLLLSVSK--DHALRLWNIQ---TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN-SKRMMN  197 (366)
T ss_dssp             CSSCTTEEEEEET--TSCEEEEETT---TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC-SHHHHH
T ss_pred             CCCCCCEEEEEeC--CCeEEEEEee---cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC-CCcccc
Confidence            99 8999999998  9999999998   566666652  4789999999999999999999 99999999998 443322


Q ss_pred             Eeec---------------------CCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccc
Q 014005          255 IVDM---------------------KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA  313 (432)
Q Consensus       255 ~~~~---------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h  313 (432)
                      .+..                     .......|...|.+++|+  + ++|++++.||.|++||++++....   ..+..+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~---~~~~~~  271 (366)
T 3k26_A          198 AIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDI---DKIKPS  271 (366)
T ss_dssp             HHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCG---GGCCTT
T ss_pred             ccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccc---cccccC
Confidence            1100                     000123488999999999  5 799999999999999998765311   111110


Q ss_pred             ccccCCccceeeeecceeEEEEcCC--CCEEEEeeC-CeEEEEec---Ccc----eeEeecceeeeehhhhhcccccccc
Q 014005          314 AESHGSKSFFTEIIASISDIKFAND--GQHLLSRDY-MNLKVFRY---EPV----MTLSFCGIYVWILRQLQHSRFMSIY  383 (432)
Q Consensus       314 ~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l~s~~~-~~i~iwd~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  383 (432)
                      .........+..|...|.+++|+|+  |++|++|+. |.|++||+   ++.    ..+..|..         ...+..+.
T Consensus       272 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---------~~~v~~~~  342 (366)
T 3k26_A          272 ESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKC---------GAAIRQTS  342 (366)
T ss_dssp             CCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTC---------CSCEEEEE
T ss_pred             CcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEccccc---------CCceEEEE
Confidence            0000111222334778999999999  999999855 99999999   222    24444421         12333332


Q ss_pred             cceeeEEEEeecccceeeeecc
Q 014005          384 ALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       384 ~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      ......++++|+.||.|.+|+.
T Consensus       343 ~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          343 FSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             ECTTSSEEEEEETTSEEEEEEC
T ss_pred             eCCCCCeEEEEeCCCEEEEEEe
Confidence            3223336889999999999984

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.2e-33  Score=277.29  Aligned_cols=280  Identities=15%  Similarity=0.253  Sum_probs=212.1

Q ss_pred             cchhhccccchhhhhhhhcC--CCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcc
Q 014005            3 LNREEASASLEWKCSQAFGE--RNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQ   80 (432)
Q Consensus         3 ~~~~~~~~~~~w~~~~~~~~--~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   80 (432)
                      +++..+.....|++...-..  ........|.+.|++++|+|+|++|++|+.||+|+|||+.+++               
T Consensus       399 ~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~---------------  463 (694)
T 3dm0_A          399 VSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV---------------  463 (694)
T ss_dssp             EEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------------
T ss_pred             EEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc---------------
Confidence            34455566778877531110  0112345799999999999999999999999999999998765               


Q ss_pred             ccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeee-ecCCCC
Q 014005           81 MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK-EMDHFP  159 (432)
Q Consensus        81 ~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~  159 (432)
                                  ....+.+|.            ..|.+++|  +|++++|++++.|++|++||........+. ....|.
T Consensus       464 ------------~~~~~~~h~------------~~v~~~~~--s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~  517 (694)
T 3dm0_A          464 ------------STRRFVGHT------------KDVLSVAF--SLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR  517 (694)
T ss_dssp             ------------EEEEEECCS------------SCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCS
T ss_pred             ------------ceeEEeCCC------------CCEEEEEE--eCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCC
Confidence                        336788999            99999999  899999999999999999998755432221 122333


Q ss_pred             ccccccccccccccccccCCCCC--cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-
Q 014005          160 FVSSENTLLAEKNFMNEHNPPSF--AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-  236 (432)
Q Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-  236 (432)
                                 ..|.+++|+|++  ..+++++.  |+.|++||++   ..++...+ .+|.+.|++++|+|++++|++| 
T Consensus       518 -----------~~v~~~~~~~~~~~~~l~s~s~--d~~v~vwd~~---~~~~~~~~-~~h~~~v~~v~~spdg~~l~sg~  580 (694)
T 3dm0_A          518 -----------DWVSCVRFSPNTLQPTIVSASW--DKTVKVWNLS---NCKLRSTL-AGHTGYVSTVAVSPDGSLCASGG  580 (694)
T ss_dssp             -----------SCEEEEEECSCSSSCEEEEEET--TSCEEEEETT---TCCEEEEE-CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             -----------CcEEEEEEeCCCCcceEEEEeC--CCeEEEEECC---CCcEEEEE-cCCCCCEEEEEEeCCCCEEEEEe
Confidence                       678999999986  46788887  9999999998   66777788 8999999999999999999999 


Q ss_pred             cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccc
Q 014005          237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES  316 (432)
Q Consensus       237 ~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~  316 (432)
                      .|+.|++||++ .++.+..+        .+...|.+++|+|++ .+|++++ ++.|++||+++++.    +..+..|...
T Consensus       581 ~Dg~i~iwd~~-~~~~~~~~--------~~~~~v~~~~~sp~~-~~l~~~~-~~~i~iwd~~~~~~----~~~~~~~~~~  645 (694)
T 3dm0_A          581 KDGVVLLWDLA-EGKKLYSL--------EANSVIHALCFSPNR-YWLCAAT-EHGIKIWDLESKSI----VEDLKVDLKA  645 (694)
T ss_dssp             TTSBCEEEETT-TTEEEECC--------BCSSCEEEEEECSSS-SEEEEEE-TTEEEEEETTTTEE----EEEECCCCC-
T ss_pred             CCCeEEEEECC-CCceEEEe--------cCCCcEEEEEEcCCC-cEEEEEc-CCCEEEEECCCCCC----hhhhcccccc
Confidence            99999999999 56655533        234579999999998 7777665 66799999998775    3444432100


Q ss_pred             cC------CccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005          317 HG------SKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       317 ~~------~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~  355 (432)
                      ..      .......+...+++++|+|||++|++|+ ||+|++||+
T Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          646 EAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI  691 (694)
T ss_dssp             ---------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             ccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence            00      0000011122478999999999999985 499999998

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-32  Score=254.51  Aligned_cols=272  Identities=12%  Similarity=0.121  Sum_probs=211.8

Q ss_pred             EEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeec-CCccccccchhhhh
Q 014005           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIE  113 (432)
Q Consensus        35 V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-h~~~~~~~~~~~~~  113 (432)
                      +.+++|++  ..+++++.|+.|++||+.+++..                           ..+.. |.            
T Consensus        96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~---------------------------~~~~~~~~------------  134 (401)
T 4aez_A           96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVS---------------------------ALAETDES------------  134 (401)
T ss_dssp             CBCEEECT--TSEEEEEETTEEEEEETTTCCEE---------------------------EEEECCTT------------
T ss_pred             EEEEeecC--CCEEEEECCCeEEEeeCCCCcEe---------------------------EeeecCCC------------
Confidence            44566665  55788889999999999887632                           33333 66            


Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      ..|.+++|  +|++++|++|+.||.|++||+.+++...  .+..+.           ..+.+++|  ++..+++++.  +
T Consensus       135 ~~v~~v~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~-----------~~v~~~~~--~~~~l~~~~~--d  195 (401)
T 4aez_A          135 TYVASVKW--SHDGSFLSVGLGNGLVDIYDVESQTKLR--TMAGHQ-----------ARVGCLSW--NRHVLSSGSR--S  195 (401)
T ss_dssp             CCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEE--EECCCS-----------SCEEEEEE--ETTEEEEEET--T
T ss_pred             CCEEEEEE--CCCCCEEEEECCCCeEEEEECcCCeEEE--EecCCC-----------CceEEEEE--CCCEEEEEcC--C
Confidence            89999999  8999999999999999999998876333  333444           67888888  5578888888  9


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (432)
                      +.+++||++.  .......+ .+|...|.+++|+|+++++++| .|+.|++||++ .......+       ..|...|.+
T Consensus       196 g~i~i~d~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~-------~~~~~~v~~  264 (401)
T 4aez_A          196 GAIHHHDVRI--ANHQIGTL-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR-SSIPKFTK-------TNHNAAVKA  264 (401)
T ss_dssp             SEEEEEETTS--SSCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-CSSEEEEE-------CCCSSCCCE
T ss_pred             CCEEEEeccc--CcceeeEE-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC-CCCccEEe-------cCCcceEEE
Confidence            9999999984  23445566 7899999999999999999999 99999999999 56666655       788999999


Q ss_pred             EEEcCCCCcEEEEEe--CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE--e-eC
Q 014005          273 AEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS--R-DY  347 (432)
Q Consensus       273 ~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s--~-~~  347 (432)
                      ++|+|++..++++++  .|+.|++||+++++.    +..+..              ...|.+++|+|+|++|++  | .+
T Consensus       265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~----~~~~~~--------------~~~v~~~~~s~~~~~l~~~~g~~d  326 (401)
T 4aez_A          265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGAR----VNTVDA--------------GSQVTSLIWSPHSKEIMSTHGFPD  326 (401)
T ss_dssp             EEECTTSTTEEEEECCTTTCEEEEEETTTCCE----EEEEEC--------------SSCEEEEEECSSSSEEEEEECTTT
T ss_pred             EEECCCCCCEEEEecCCCCCEEEEEECCCCCE----EEEEeC--------------CCcEEEEEECCCCCeEEEEeecCC
Confidence            999998867888876  799999999998875    466654              478999999999999998  4 35


Q ss_pred             CeEEEEec-C--ccee--EeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005          348 MNLKVFRY-E--PVMT--LSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       348 ~~i~iwd~-~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                      +.|++||+ .  ....  +..|..           .+..+.......++++|+.||.|.+|+..
T Consensus       327 g~i~v~~~~~~~~~~~~~~~~h~~-----------~v~~~~~s~dg~~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          327 NNLSIWSYSSSGLTKQVDIPAHDT-----------RVLYSALSPDGRILSTAASDENLKFWRVY  379 (401)
T ss_dssp             CEEEEEEEETTEEEEEEEEECCSS-----------CCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred             CcEEEEecCCccceeEEEecCCCC-----------CEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            99999999 2  3333  223322           22222222223368899999999999943

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.7e-32  Score=266.09  Aligned_cols=288  Identities=11%  Similarity=0.087  Sum_probs=225.2

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|.+.|++++|+|+|++||+++ ++.|+||+++++..                       ..+....+.+|.       
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-----------------------~~~~~~~~~~h~-------   63 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-----------------------KVPPVVQFTGHG-------   63 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-----------------------SSCSEEEECTTT-------
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-----------------------ccccceEEecCC-------
Confidence            46788999999999999999988 78999999987610                       012346788998       


Q ss_pred             hhhhhcc-eeEEEEEEcC--CCCEEEEEeCCCeEEEEEccCc------ceeeeeecCCCCccccccccccccccccccCC
Q 014005          109 SLEIEEK-INRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQ------KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (432)
Q Consensus       109 ~~~~~~~-v~~l~~~~s~--~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  179 (432)
                           .. |.+++|  +|  ++++|++++.||.|++||+.++      .......+..+.           ..+.+++|+
T Consensus        64 -----~~~v~~~~~--sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~s  125 (615)
T 1pgu_A           64 -----SSVVTTVKF--SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA-----------GPISDISWD  125 (615)
T ss_dssp             -----TSCEEEEEE--CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS-----------SCEEEEEEC
T ss_pred             -----CceEEEEEE--CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccc-----------ccEEEEEEe
Confidence                 89 999999  89  9999999999999999999765      333444444444           789999999


Q ss_pred             CCCcceecceeecc--ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeE
Q 014005          180 PSFAHGYHLEWTEN--MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNI  255 (432)
Q Consensus       180 ~~~~~~~~~~~~~~--~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~  255 (432)
                      |++.+++.++...+  +.+.+||.     .+....+ .+|...|.+++|+|+++ .++++ .|+.|++||++ ..+....
T Consensus       126 ~~~~~l~~~~~~~~~~~~v~~~d~-----~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~-~~~~~~~  198 (615)
T 1pgu_A          126 FEGRRLCVVGEGRDNFGVFISWDS-----GNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP-PFKFSAS  198 (615)
T ss_dssp             TTSSEEEEEECCSSCSEEEEETTT-----CCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT-TBEEEEE
T ss_pred             CCCCEEEEeccCCCCccEEEEEEC-----CCcceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC-Ccceeee
Confidence            99999999887221  68888883     3466667 78999999999999998 78888 99999999998 6677666


Q ss_pred             eecCCCCcCCCCc---ceEEEEEcCC-CCcEEEEEeCCCeEEEEEccccccccccceee-c---ccccccCCccceeeee
Q 014005          256 VDMKPSNMDDLTE---VITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-R---DAAESHGSKSFFTEII  327 (432)
Q Consensus       256 ~~~~~~~~~~~~~---~v~~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~---~h~~~~~~~~~~~~~~  327 (432)
                      +       .+|..   .|++++|+|+ + ++|++++.||.|++||+++++.    +..+ .   .|             .
T Consensus       199 ~-------~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~-------------~  253 (615)
T 1pgu_A          199 D-------RTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEF----LKYIEDDQEPV-------------Q  253 (615)
T ss_dssp             E-------CSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCE----EEECCBTTBCC-------------C
T ss_pred             e-------cccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCE----eEEeccccccc-------------C
Confidence            5       77888   9999999999 8 9999999999999999998876    4666 4   55             7


Q ss_pred             cceeEEEEcCCCCEEEEee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeee
Q 014005          328 ASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSAL  403 (432)
Q Consensus       328 ~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~  403 (432)
                      ..|.+++|+ ++++|++++ ++.|++||+   +.+..+..+..      . ........... ....+++|+.++.+.+|
T Consensus       254 ~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~------~-~~~~~~~~~~~-~~~~l~~~~~~g~i~~~  324 (615)
T 1pgu_A          254 GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ------Q-LGNQQVGVVAT-GNGRIISLSLDGTLNFY  324 (615)
T ss_dssp             SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTT------C-GGGCEEEEEEE-ETTEEEEEETTSCEEEE
T ss_pred             CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC------c-ccCceeEEEeC-CCCeEEEEECCCCEEEE
Confidence            899999999 999999975 499999999   45555554421      0 01111111111 22257777788888888


Q ss_pred             ccC
Q 014005          404 SAG  406 (432)
Q Consensus       404 ~~~  406 (432)
                      +..
T Consensus       325 d~~  327 (615)
T 1pgu_A          325 ELG  327 (615)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            843

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.8e-32  Score=276.01  Aligned_cols=253  Identities=15%  Similarity=0.178  Sum_probs=213.8

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|++.|++++|+|+|++||+|+.||.|+|||+.+++                           ....+.+|.       
T Consensus        10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~---------------------------~~~~~~~~~-------   55 (814)
T 3mkq_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV---------------------------EVRSIQVTE-------   55 (814)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS-------
T ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc---------------------------eEEEEecCC-------
Confidence            3688999999999999999999999999999998865                           336788898       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           ..|.+++|  +|++++|++++.||.|++||+.+++...  .+..+.           +.|.+++|+|++.+++++
T Consensus        56 -----~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~--~~~~~~-----------~~v~~~~~s~~~~~l~~~  115 (814)
T 3mkq_A           56 -----TPVRAGKF--IARKNWIIVGSDDFRIRVFNYNTGEKVV--DFEAHP-----------DYIRSIAVHPTKPYVLSG  115 (814)
T ss_dssp             -----SCEEEEEE--EGGGTEEEEEETTSEEEEEETTTCCEEE--EEECCS-----------SCEEEEEECSSSSEEEEE
T ss_pred             -----CcEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCcEEE--EEecCC-----------CCEEEEEEeCCCCEEEEE
Confidence                 99999999  8899999999999999999999887433  333444           789999999999999998


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      +.  ++.+++||+...  ..+...+ .+|...|.+++|+| ++..++++ .|+.|++||++ .+.....+      ...+
T Consensus       116 ~~--dg~i~vw~~~~~--~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~-~~~~~~~~------~~~~  183 (814)
T 3mkq_A          116 SD--DLTVKLWNWENN--WALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG-QSTPNFTL------TTGQ  183 (814)
T ss_dssp             ET--TSEEEEEEGGGT--SEEEEEE-ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETT-CSSCSEEE------ECCC
T ss_pred             cC--CCEEEEEECCCC--ceEEEEE-cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCcceeEE------ecCC
Confidence            88  999999999831  2556666 78999999999999 88899999 99999999998 44444333      1344


Q ss_pred             CcceEEEEEcC--CCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          267 TEVITSAEFHP--IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       267 ~~~v~~~~~~p--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      ...+..++|+|  ++ .+|++++.||.|++||+++++.    ...+.+|             ...|.+++|+|+|++|++
T Consensus       184 ~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~-------------~~~v~~~~~~~~~~~l~~  245 (814)
T 3mkq_A          184 ERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSC----VATLEGH-------------MSNVSFAVFHPTLPIIIS  245 (814)
T ss_dssp             TTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEE----EEEEECC-------------SSCEEEEEECSSSSEEEE
T ss_pred             CCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcE----EEEEcCC-------------CCCEEEEEEcCCCCEEEE
Confidence            57899999999  88 8999999999999999998775    5777776             789999999999999999


Q ss_pred             eeC-CeEEEEec---CcceeEeecc
Q 014005          345 RDY-MNLKVFRY---EPVMTLSFCG  365 (432)
Q Consensus       345 ~~~-~~i~iwd~---~~~~~~~~~~  365 (432)
                      ++. |.|++||+   +.+..+..+.
T Consensus       246 ~~~dg~v~vwd~~~~~~~~~~~~~~  270 (814)
T 3mkq_A          246 GSEDGTLKIWNSSTYKVEKTLNVGL  270 (814)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCSS
T ss_pred             EeCCCeEEEEECCCCcEEEEeecCC
Confidence            854 99999999   5555555554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=251.75  Aligned_cols=274  Identities=12%  Similarity=0.142  Sum_probs=207.4

Q ss_pred             ccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCC---CCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc
Q 014005            8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKT---GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT   84 (432)
Q Consensus         8 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~---g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   84 (432)
                      +.....|++..  ++........|.+.|++++|+|+   |++|++|+.||.|++||+.+++.                  
T Consensus        43 d~~v~iw~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------------  102 (357)
T 3i2n_A           43 TGVIQLYEIQH--GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM------------------  102 (357)
T ss_dssp             CEEEEEEEECS--SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS------------------
T ss_pred             CcEEEEEeCCC--CcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc------------------
Confidence            44566676652  11112233478999999999999   79999999999999999988651                  


Q ss_pred             ccccCCcceeeeeecCCccccccchhhhhcceeEEEEEE----cCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCC
Q 014005           85 STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA----APNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHF  158 (432)
Q Consensus        85 ~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~----s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~  158 (432)
                              ....+.+|.            ..|.++.|.+    ++++++|++++.|+.|++||+..+.  ...+..+..+
T Consensus       103 --------~~~~~~~~~------------~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  162 (357)
T 3i2n_A          103 --------PVYSVKGHK------------EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE  162 (357)
T ss_dssp             --------CSEEECCCS------------SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS
T ss_pred             --------cEEEEEecc------------cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC
Confidence                    226788898            9999997743    6889999999999999999998765  2222222211


Q ss_pred             Ccccccccccccccccccc----CCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC---CCC
Q 014005          159 PFVSSENTLLAEKNFMNEH----NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCE  231 (432)
Q Consensus       159 ~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~  231 (432)
                      .          ...+.++.    |++++.++++++.  ++.+++||++   ..+....  ..|...|.+++|+|   ++.
T Consensus       163 ~----------~~~v~~~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~---~~~~~~~--~~~~~~v~~~~~~~~~~~~~  225 (357)
T 3i2n_A          163 N----------KRDCWTVAFGNAYNQEERVVCAGYD--NGDIKLFDLR---NMALRWE--TNIKNGVCSLEFDRKDISMN  225 (357)
T ss_dssp             C----------CCCEEEEEEECCCC-CCCEEEEEET--TSEEEEEETT---TTEEEEE--EECSSCEEEEEESCSSSSCC
T ss_pred             C----------CCceEEEEEEeccCCCCCEEEEEcc--CCeEEEEECc---cCceeee--cCCCCceEEEEcCCCCCCCC
Confidence            1          13566666    8899999999988  9999999998   5555443  46888999999999   899


Q ss_pred             EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCc-EEEEEeCCCeEEEEEcccccccc-----
Q 014005          232 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCD-----  304 (432)
Q Consensus       232 ~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~i~iwd~~~~~~~~-----  304 (432)
                      .++++ .|+.|++||++ .+.....+..  ....+|...|++++|+|++ + +|++++.||.|++||++.+....     
T Consensus       226 ~l~~~~~dg~i~i~d~~-~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  301 (357)
T 3i2n_A          226 KLVATSLEGKFHVFDMR-TQHPTKGFAS--VSEKAHKSTVWQVRHLPQN-RELFLTAGGAGGLHLWKYEYPIQRSKKDSE  301 (357)
T ss_dssp             EEEEEESTTEEEEEEEE-EEETTTEEEE--EEEECCSSCEEEEEEETTE-EEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred             EEEEECCCCeEEEEeCc-CCCcccceee--eccCCCcCCEEEEEECCCC-CcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence            99999 99999999998 4443333200  0124889999999999998 6 89999999999999998654310     


Q ss_pred             ----------ccceeecccccccCCccceeeeecceeEEEEcCCCCEEE-Eee-CCeEEEEec
Q 014005          305 ----------HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD-YMNLKVFRY  355 (432)
Q Consensus       305 ----------~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~-s~~-~~~i~iwd~  355 (432)
                                +.+..+.+|             ...|.+++|+|+|++|+ +++ |+.|++||+
T Consensus       302 g~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~  351 (357)
T 3i2n_A          302 GIEMGVAGSVSLLQNVTLS-------------TQPISSLDWSPDKRGLCVCSSFDQTVRVLIV  351 (357)
T ss_dssp             SCCCCCCCEEEEEEEEECC-------------SSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             CCccccccccceeeccccC-------------CCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence                      113444444             78999999999999998 665 599999998

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.4e-32  Score=251.35  Aligned_cols=283  Identities=12%  Similarity=0.074  Sum_probs=213.6

Q ss_pred             hhccccchhhhhhhhcC---CCCCccccCCCcEEEEEEcCC----C---CEEEEecccceEEEEEecCCcCCCCccccch
Q 014005            6 EEASASLEWKCSQAFGE---RNPDEELQDVDIVSAIEFDKT----G---DYLAVGDRGGRVILFETVGGKNTPNQHISRS   75 (432)
Q Consensus         6 ~~~~~~~~w~~~~~~~~---~~~~~~~~h~~~V~~~~fsp~----g---~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~   75 (432)
                      ..+.....|++...-..   ........|...|++++|+|+    |   ++|++++.||.|++|++.+++..        
T Consensus        33 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~--------  104 (397)
T 1sq9_A           33 SGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET--------  104 (397)
T ss_dssp             ETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT--------
T ss_pred             cCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc--------
Confidence            44455566666532100   012233468999999999999    9   99999999999999999887631        


Q ss_pred             hhhccccccccccCCcceeeeeecC-----CccccccchhhhhcceeEEEEEEc----CCCCE-EEEEeCCCeEEEEEcc
Q 014005           76 ELEKQMDFTSTSHPEYRYKTEFQSH-----EPEFDYLKSLEIEEKINRVRWCAA----PNGSM-FILSTNDKTIKLWKVR  145 (432)
Q Consensus        76 ~~~~~~~~~~~~~p~~~~~~~~~~h-----~~~~~~~~~~~~~~~v~~l~~~~s----~~~~~-l~s~~~d~~i~iwd~~  145 (432)
                                    .......+.+|     .            ..|.+++|  +    |++++ |++++.||.|++||+.
T Consensus       105 --------------~~~~~~~~~~~~~~~~~------------~~v~~~~~--~~~~~~~~~~~l~~~~~dg~i~iwd~~  156 (397)
T 1sq9_A          105 --------------KKVIFEKLDLLDSDMKK------------HSFWALKW--GASNDRLLSHRLVATDVKGTTYIWKFH  156 (397)
T ss_dssp             --------------CCEEEEEECCSCTTGGG------------SCEEEEEE--ECCC----CEEEEEEETTSCEEEEEEE
T ss_pred             --------------ccccceeecccccccCC------------CcEEEEEE--eeccCCCCceEEEEEeCCCcEEEEeCC
Confidence                          01113566667     5            78999999  6    89999 9999999999999998


Q ss_pred             C------cceee-----eeec-----CCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeeccccccee
Q 014005          146 D------QKVKK-----IKEM-----DHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARC  209 (432)
Q Consensus       146 ~------~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~  209 (432)
                      .      ++...     ....     ..+           ...+.+++|+|++ .+++++.  ++.+++||++   ..++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~-~l~~~~~--dg~i~i~d~~---~~~~  219 (397)
T 1sq9_A          157 PFADESNSLTLNWSPTLELQGTVESPMTP-----------SQFATSVDISERG-LIATGFN--NGTVQISELS---TLRP  219 (397)
T ss_dssp             SSSSHHHHTTTCCCCEEEEEEEECCSSSS-----------CCCCCEEEECTTS-EEEEECT--TSEEEEEETT---TTEE
T ss_pred             ccccccccceeeccCcceeeeeeccccCC-----------CCCceEEEECCCc-eEEEEeC--CCcEEEEECC---CCce
Confidence            7      44221     1110     122           3789999999999 8888888  9999999998   6778


Q ss_pred             eEEeecC---C---CCCeeEEEeCCCCCEEEEE-cC---CeEEEEeCCCCCceeeEeecCCCCcCC-------------C
Q 014005          210 QKVYPHA---H---DFNINSISNNSDCETFVSA-DD---LRINLWNLEISDQCFNIVDMKPSNMDD-------------L  266 (432)
Q Consensus       210 ~~~~~~~---~---~~~i~~~~~~~~~~~l~~~-~d---~~i~lwd~~~~~~~~~~~~~~~~~~~~-------------~  266 (432)
                      +..+ ..   |   ...|.+++|+|++++|+++ .|   +.|++||++ ..+.+..+       ..             |
T Consensus       220 ~~~~-~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~-~~~~~~~~-------~~~~~~~~~~~~~~~~  290 (397)
T 1sq9_A          220 LYNF-ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE-FGERIGSL-------SVPTHSSQASLGEFAH  290 (397)
T ss_dssp             EEEE-ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT-TCCEEEEE-------CBC--------CCBSB
T ss_pred             eEEE-eccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECC-CCccccee-------ccCccccccccccccc
Confidence            8877 66   8   8999999999999999999 88   999999999 56666665       44             8


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeec------ccccccC--CccceeeeecceeEEEEcCC
Q 014005          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR------DAAESHG--SKSFFTEIIASISDIKFAND  338 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~h~~~~~--~~~~~~~~~~~v~~~~~s~d  338 (432)
                      ...|.+++|+|++ ++|++++.||.|++||+++++.    +..+.      .|..+..  .......|...|.+++|+|+
T Consensus       291 ~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~  365 (397)
T 1sq9_A          291 SSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKER----ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK  365 (397)
T ss_dssp             SSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE----EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred             CCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCce----eEEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence            8999999999999 9999999999999999998876    56666      3210000  00011223678999999999


Q ss_pred             C----------CEEEEee-CCeEEEEec
Q 014005          339 G----------QHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       339 g----------~~l~s~~-~~~i~iwd~  355 (432)
                      |          ++|++++ |+.|++||+
T Consensus       366 g~~~~~~~~~~~~l~s~~~dg~i~iw~~  393 (397)
T 1sq9_A          366 GWRSGMGADLNESLCCVCLDRSIRWFRE  393 (397)
T ss_dssp             TTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             cccccccccccceEEEecCCCcEEEEEc
Confidence            8          7899875 599999997

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.6e-31  Score=284.02  Aligned_cols=249  Identities=17%  Similarity=0.258  Sum_probs=209.7

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ...|.+.|++++|+|+|++||+|+.||+|++||+.+++                           .+..+.+|.      
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~---------------------------~~~~~~~h~------  657 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE---------------------------KLLDIKAHE------  657 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------------------------EEEEECCCS------
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC---------------------------EEEEeccCC------
Confidence            34689999999999999999999999999999998876                           336788999      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC--Ccce
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS--FAHG  185 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~  185 (432)
                            ..|.+++|  +|+++++++++.|+.|++||+.+++...  .+..+.           ..+.+++|+++  ...+
T Consensus       658 ------~~v~~~~~--s~~~~~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~-----------~~v~~~~~~~~~~~~~l  716 (1249)
T 3sfz_A          658 ------DEVLCCAF--SSDDSYIATCSADKKVKIWDSATGKLVH--TYDEHS-----------EQVNCCHFTNKSNHLLL  716 (1249)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEE--EEECCS-----------SCEEEEEECSSSSCCEE
T ss_pred             ------CCEEEEEE--ecCCCEEEEEeCCCeEEEEECCCCceEE--EEcCCC-----------CcEEEEEEecCCCceEE
Confidence                  99999999  8999999999999999999999887433  333444           78999999995  4567


Q ss_pred             ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCC----
Q 014005          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP----  260 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~----  260 (432)
                      ++++.  |+.+++||+.   .+.+...+ .+|.+.|.+++|+|+++.++++ .||.|++||++ .+.....+....    
T Consensus       717 ~sg~~--d~~v~vwd~~---~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~-~~~~~~~~~~~~~~~~  789 (1249)
T 3sfz_A          717 ATGSN--DFFLKLWDLN---QKECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR-SANERKSINVKRFFLS  789 (1249)
T ss_dssp             EEEET--TSCEEEEETT---SSSEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGG-GTEEEEEEECCCCC--
T ss_pred             EEEeC--CCeEEEEECC---Ccchhhee-cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCC-CCcccceecccccccc
Confidence            77777  9999999998   77788888 7999999999999999999999 99999999998 444333322110    


Q ss_pred             ---------------------------------------C-----CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 014005          261 ---------------------------------------S-----NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (432)
Q Consensus       261 ---------------------------------------~-----~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd  296 (432)
                                                             .     ...+|...|.+++|+|++ .++++++.||.|++||
T Consensus       790 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd  868 (1249)
T 3sfz_A          790 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWN  868 (1249)
T ss_dssp             ------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEE
T ss_pred             cCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEE
Confidence                                                   0     012677889999999999 9999999999999999


Q ss_pred             ccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      +.++..    ...+.+|             ...|.+++|+|+|++|++++. +.|++||+
T Consensus       869 ~~~~~~----~~~~~~h-------------~~~v~~v~~spdg~~l~s~s~dg~v~vw~~  911 (1249)
T 3sfz_A          869 IDSRLK----VADCRGH-------------LSWVHGVMFSPDGSSFLTASDDQTIRVWET  911 (1249)
T ss_dssp             TTTTEE----EEEECCC-------------SSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred             cCCCce----eeecCCC-------------ccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            998776    5777887             788999999999999998754 99999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1e-32  Score=253.97  Aligned_cols=255  Identities=12%  Similarity=0.160  Sum_probs=201.4

Q ss_pred             cCCCcEEEEEEcCC----CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        30 ~h~~~V~~~~fsp~----g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      .|...|++++|+|+    |++|++|+.||.|++||+.+++                           .+..+.+|.    
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---------------------------~~~~~~~~~----  115 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ---------------------------CIKHYVGHG----  115 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC---------------------------EEEEEESCC----
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce---------------------------EeeeecCCC----
Confidence            36788999999999    6799999999999999998765                           346788898    


Q ss_pred             ccchhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeee-ecCCCCccccccccccccccccccCCCCCc
Q 014005          106 YLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIK-EMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  183 (432)
                              ..|.+++|  +| ++++|++++.||.|++||+.+++..... ....+.           ..|.+++|+|++.
T Consensus       116 --------~~i~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~  174 (366)
T 3k26_A          116 --------NAINELKF--HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR-----------DEVLSADYDLLGE  174 (366)
T ss_dssp             --------SCEEEEEE--CSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS-----------SCEEEEEECTTSS
T ss_pred             --------CcEEEEEE--CCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc-----------CceeEEEECCCCC
Confidence                    99999999  88 8999999999999999999987644332 123444           7899999999999


Q ss_pred             ceecceeeccceEEEEeecccccceeeEEe---------------------------ecCCCCCeeEEEeCCCCCEEEEE
Q 014005          184 HGYHLEWTENMATKIANVGNSVHARCQKVY---------------------------PHAHDFNINSISNNSDCETFVSA  236 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~---------------------------~~~~~~~i~~~~~~~~~~~l~~~  236 (432)
                      ++++++.  |+.+++||++..   +....+                           ...|...|.+++|+  +++++++
T Consensus       175 ~l~~~~~--dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~  247 (366)
T 3k26_A          175 KIMSCGM--DHSLKLWRINSK---RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK  247 (366)
T ss_dssp             EEEEEET--TSCEEEEESCSH---HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred             EEEEecC--CCCEEEEECCCC---ccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence            9999998  999999999832   222111                           13489999999998  6799999


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecC------CCCcCCCCcceEEEEEcCC--CCcEEEEEeCCCeEEEEEccccccccccc
Q 014005          237 -DDLRINLWNLEISDQCFNIVDMK------PSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSA  307 (432)
Q Consensus       237 -~d~~i~lwd~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  307 (432)
                       .|+.|++||++........+...      ...+..|...|++++|+|+  + ++|++|+.||.|++||+++++......
T Consensus       248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~  326 (366)
T 3k26_A          248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVGKLYVWDLEVEDPHKAKC  326 (366)
T ss_dssp             CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTSCEEEEECCSSSGGGCEE
T ss_pred             ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCCcEEEEECCCCCCccccc
Confidence             99999999998432211100000      0123678888999999999  8 999999999999999999876532223


Q ss_pred             eeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          308 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       308 ~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      ..+..|.           +...|.+++|+|+|++|++++. |.|++||+
T Consensus       327 ~~~~~~~-----------~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          327 TTLTHHK-----------CGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             EEECCTT-----------CCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             eEEcccc-----------cCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            4566541           1478999999999999999755 99999997

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.2e-31  Score=253.52  Aligned_cols=270  Identities=13%  Similarity=0.135  Sum_probs=207.6

Q ss_pred             hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005            6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS   85 (432)
Q Consensus         6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (432)
                      ..+.....|.....   +.......|.+.|++++|+|++ +|++|+.||+|++||+++++                    
T Consensus       139 s~dg~i~vwd~~~~---~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~--------------------  194 (464)
T 3v7d_B          139 ADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC--------------------  194 (464)
T ss_dssp             ETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE--------------------
T ss_pred             cCCCcEEEEECCCC---cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc--------------------
Confidence            44455566665421   1112223689999999999988 89999999999999998865                    


Q ss_pred             cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccc--
Q 014005           86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS--  163 (432)
Q Consensus        86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--  163 (432)
                             ....+.+|.            ..|.+++|.+.+++.++++++.|+.|++||+.++................  
T Consensus       195 -------~~~~~~~h~------------~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  255 (464)
T 3v7d_B          195 -------CTHVFEGHN------------STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT  255 (464)
T ss_dssp             -------EEEEECCCS------------SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred             -------EEEEECCCC------------CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence                   346788899            99999999776888999999999999999998765321110000000000  


Q ss_pred             ------cccc--ccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE
Q 014005          164 ------ENTL--LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS  235 (432)
Q Consensus       164 ------~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  235 (432)
                            ....  .....+.++  ++++.++++++.  ++.+++||+.   ..+++..+ .+|...|.+++|+|+++.+++
T Consensus       256 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~--d~~i~vwd~~---~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s  327 (464)
T 3v7d_B          256 PEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSY--DNTLIVWDVA---QMKCLYIL-SGHTDRIYSTIYDHERKRCIS  327 (464)
T ss_dssp             GGGCTTEEEEECCCSSCEEEE--EEETTEEEEEET--TSCEEEEETT---TTEEEEEE-CCCSSCEEEEEEETTTTEEEE
T ss_pred             cCCCeEEEEEccCccceEEEE--cCCCCEEEEEeC--CCeEEEEECC---CCcEEEEe-cCCCCCEEEEEEcCCCCEEEE
Confidence                  0000  001333333  677888898888  9999999998   77888888 889999999999999999999


Q ss_pred             E-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccc
Q 014005          236 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA  314 (432)
Q Consensus       236 ~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~  314 (432)
                      | .|+.|++||++ +++.+..+       .+|...|.+++|+  + .+|++++.||.|++||++++..    ...+..  
T Consensus       328 g~~dg~i~vwd~~-~~~~~~~~-------~~h~~~v~~~~~~--~-~~l~s~s~dg~v~vwd~~~~~~----~~~~~~--  390 (464)
T 3v7d_B          328 ASMDTTIRIWDLE-NGELMYTL-------QGHTALVGLLRLS--D-KFLVSAAADGSIRGWDANDYSR----KFSYHH--  390 (464)
T ss_dssp             EETTSCEEEEETT-TTEEEEEE-------CCCSSCEEEEEEC--S-SEEEEEETTSEEEEEETTTCCE----EEEEEC--
T ss_pred             EeCCCcEEEEECC-CCcEEEEE-------eCCCCcEEEEEEc--C-CEEEEEeCCCcEEEEECCCCce----eeeecC--
Confidence            9 99999999999 67777766       7899999999997  4 7899999999999999998654    222222  


Q ss_pred             cccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          315 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       315 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                                  ...+..++|++++++|++|+++.|++||+
T Consensus       391 ------------~~~~~~~~~~~~~~~l~~~~dg~i~iwd~  419 (464)
T 3v7d_B          391 ------------TNLSAITTFYVSDNILVSGSENQFNIYNL  419 (464)
T ss_dssp             ------------TTCCCEEEEEECSSEEEEEETTEEEEEET
T ss_pred             ------------CCCccEEEEEeCCCEEEEecCCeEEEEEC
Confidence                        46788899999999999998999999999

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=6.6e-32  Score=254.41  Aligned_cols=264  Identities=15%  Similarity=0.184  Sum_probs=207.0

Q ss_pred             ccccCCCcEEEEEEcCC-CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           27 EELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        27 ~~~~h~~~V~~~~fsp~-g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ..+.|.+.|++++|+|+ +.+||+|+.||.|++|++........                 ..........+.+|.    
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------~~~~~~~~~~~~~h~----  181 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------------PSGECQPDLRLRGHQ----  181 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------TTCCCCCSEEEECCS----
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------------ccccCCCcEEecCCC----
Confidence            34678999999999997 78999999999999999976321100                 000133456788998    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCC-EEEEEeCCCeEEEEEccCcce-----eeeeecCCCCccccccccccccccccccCC
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKV-----KKIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  179 (432)
                              ..|.+++|  +|++. +|++|+.||.|++||+..+..     .....+..+.           ..|.+++|+
T Consensus       182 --------~~v~~l~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~-----------~~v~~v~~~  240 (430)
T 2xyi_A          182 --------KEGYGLSW--NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT-----------AVVEDVAWH  240 (430)
T ss_dssp             --------SCCCCEEE--CTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS-----------SCEEEEEEC
T ss_pred             --------CCeEEEEe--CCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC-----------CCEeeeEEe
Confidence                    89999999  88888 999999999999999987321     1122333344           789999999


Q ss_pred             C-CCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEe
Q 014005          180 P-SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIV  256 (432)
Q Consensus       180 ~-~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~  256 (432)
                      | +...+++++.  ++.|++||++.....++...+ ..|...|++++|+|+++ ++++| .||.|++||++.....+..+
T Consensus       241 p~~~~~l~s~~~--dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~  317 (430)
T 2xyi_A          241 LLHESLFGSVAD--DQKLMIWDTRNNNTSKPSHTV-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF  317 (430)
T ss_dssp             SSCTTEEEEEET--TSEEEEEETTCSCSSSCSEEE-ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE
T ss_pred             CCCCCEEEEEeC--CCeEEEEECCCCCCCcceeEe-ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe
Confidence            9 5677778877  999999999854333566666 68999999999999987 57788 99999999999545566655


Q ss_pred             ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccc----------cccceeecccccccCCccceeee
Q 014005          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC----------DHSARILRDAAESHGSKSFFTEI  326 (432)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~h~~~~~~~~~~~~~  326 (432)
                             ..|...|++++|+|++..+|++++.||.|++||++.....          ...+..+.+|             
T Consensus       318 -------~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-------------  377 (430)
T 2xyi_A          318 -------ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-------------  377 (430)
T ss_dssp             -------ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC-------------
T ss_pred             -------ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC-------------
Confidence                   7899999999999998568999999999999999873210          0113444554             


Q ss_pred             ecceeEEEEcCCCC-EEEEeeC-CeEEEEec
Q 014005          327 IASISDIKFANDGQ-HLLSRDY-MNLKVFRY  355 (432)
Q Consensus       327 ~~~v~~~~~s~dg~-~l~s~~~-~~i~iwd~  355 (432)
                      ...|.+++|+|+++ +|+++++ |.|++|++
T Consensus       378 ~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~  408 (430)
T 2xyi_A          378 TAKISDFSWNPNEPWIICSVSEDNIMQVWQM  408 (430)
T ss_dssp             SSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             CCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence            77899999999999 7887654 99999999

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.9e-31  Score=250.54  Aligned_cols=282  Identities=12%  Similarity=0.080  Sum_probs=210.0

Q ss_pred             hccccchhhhhhhhcCCCCCcc-ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005            7 EASASLEWKCSQAFGERNPDEE-LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS   85 (432)
Q Consensus         7 ~~~~~~~w~~~~~~~~~~~~~~-~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (432)
                      .+.....|.+..-    ..... ..|.+.|++++|+|++++|++|+.|++|++||+.+++..                  
T Consensus       117 ~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~------------------  174 (420)
T 3vl1_A          117 TEGDIKVLDSNFN----LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP------------------  174 (420)
T ss_dssp             TTSCEEEECTTSC----EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC------------------
T ss_pred             CCCCEEEEeCCCc----ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc------------------
Confidence            3445566665421    11222 378999999999999999999999999999999887643                  


Q ss_pred             cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecC-CCC-cccc
Q 014005           86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-HFP-FVSS  163 (432)
Q Consensus        86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~-~~~~  163 (432)
                               ..+.+|.            ..|.+++|  +|++++|++++.|+.|++||+.+++........ .+. .+..
T Consensus       175 ---------~~~~~h~------------~~v~~~~~--~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~  231 (420)
T 3vl1_A          175 ---------RTLIGHR------------ATVTDIAI--IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNS  231 (420)
T ss_dssp             ---------EEEECCS------------SCEEEEEE--ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEE
T ss_pred             ---------eEEcCCC------------CcEEEEEE--cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccE
Confidence                     6788999            99999999  889999999999999999999988744332211 111 0000


Q ss_pred             cc---------ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EE
Q 014005          164 EN---------TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TF  233 (432)
Q Consensus       164 ~~---------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l  233 (432)
                      +.         .......+.+++|+|++.++++++.  ++.+++||++   ..+....+...|...|.+++|+|+++ ++
T Consensus       232 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  306 (420)
T 3vl1_A          232 IALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV--SGVITVHNVF---SKEQTIQLPSKFTCSCNSLTVDGNNANYI  306 (420)
T ss_dssp             EEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET--TSCEEEEETT---TCCEEEEECCTTSSCEEEEEECSSCTTEE
T ss_pred             EEEecCCcceeeecccCcccceEEcCCCCEEEEEcC--CCeEEEEECC---CCceeEEcccccCCCceeEEEeCCCCCEE
Confidence            00         0112467889999999999999988  9999999998   55666666467889999999999998 99


Q ss_pred             EEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC-CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeec
Q 014005          234 VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR  311 (432)
Q Consensus       234 ~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  311 (432)
                      ++| .||.|++||++.....+..+       .. |...|+++.+ +++ ++|++++.||.|++||+........ ...+.
T Consensus       307 ~~g~~dg~i~vwd~~~~~~~~~~~-------~~~~~~~v~~~~~-~~~-~~l~s~~~d~~v~iw~~~~~~~~~~-~~~~~  376 (420)
T 3vl1_A          307 YAGYENGMLAQWDLRSPECPVGEF-------LINEGTPINNVYF-AAG-ALFVSSGFDTSIKLDIISDPESERP-AIEFE  376 (420)
T ss_dssp             EEEETTSEEEEEETTCTTSCSEEE-------EESTTSCEEEEEE-ETT-EEEEEETTTEEEEEEEECCTTCCSC-EECTT
T ss_pred             EEEeCCCeEEEEEcCCCcCchhhh-------hccCCCCceEEEe-CCC-CEEEEecCCccEEEEeccCCCCCcc-ceecc
Confidence            999 99999999999444445544       33 6677888855 466 8999999999999999987432100 00000


Q ss_pred             ccccccCCccceeeeecceeEEEEcCCCC----EEEEeeCCeEEEEec
Q 014005          312 DAAESHGSKSFFTEIIASISDIKFANDGQ----HLLSRDYMNLKVFRY  355 (432)
Q Consensus       312 ~h~~~~~~~~~~~~~~~~v~~~~~s~dg~----~l~s~~~~~i~iwd~  355 (432)
                      .       ...+..+...|.+++|+|+++    ++++|++|.+.+|++
T Consensus       377 ~-------~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~  417 (420)
T 3vl1_A          377 T-------PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL  417 (420)
T ss_dssp             S-------CEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred             C-------ccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence            0       011122368899999999998    666677799999997

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.6e-31  Score=249.92  Aligned_cols=269  Identities=16%  Similarity=0.224  Sum_probs=215.9

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .|...|+|++|  ++++|++|+.||.|++||+.+++                           ....+.+|.        
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~---------------------------~~~~~~~h~--------  173 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE---------------------------CKRILTGHT--------  173 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC---------------------------EEEEECCCS--------
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe---------------------------EEEEEcCCC--------
Confidence            46678999887  79999999999999999998765                           346788999        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                          ..|.+++|    +++++++|+.||.|++||+.+++..  ..+..+.           ..+.+++|++  ..+++++
T Consensus       174 ----~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~~h~-----------~~v~~l~~~~--~~l~s~s  230 (435)
T 1p22_A          174 ----GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEML--NTLIHHC-----------EAVLHLRFNN--GMMVTCS  230 (435)
T ss_dssp             ----SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEE--EEECCCC-----------SCEEEEECCT--TEEEEEE
T ss_pred             ----CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEE--EEEcCCC-----------CcEEEEEEcC--CEEEEee
Confidence                99999988    6789999999999999999988743  3334444           7788899874  4788888


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      .  |+.+++||+...........+ .+|...|.++++  +++++++| .|+.|++||++ +++.+..+       .+|..
T Consensus       231 ~--dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~-~~~~~~~~-------~~~~~  297 (435)
T 1p22_A          231 K--DRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTS-TCEFVRTL-------NGHKR  297 (435)
T ss_dssp             T--TSCEEEEECSSSSCCEEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-TCCEEEEE-------ECCSS
T ss_pred             C--CCcEEEEeCCCCCCceeeeEe-cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC-cCcEEEEE-------cCCCC
Confidence            7  999999999854333333555 789999999999  77899999 99999999999 66777766       78999


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-  347 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-  347 (432)
                      .|.++.++  + .++++|+.||.|++||+++++.    +..+.+|             ...|.+++|  ++.+|++|+. 
T Consensus       298 ~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h-------------~~~v~~~~~--~~~~l~sg~~d  355 (435)
T 1p22_A          298 GIACLQYR--D-RLVVSGSSDNTIRLWDIECGAC----LRVLEGH-------------EELVRCIRF--DNKRIVSGAYD  355 (435)
T ss_dssp             CEEEEEEE--T-TEEEEEETTSCEEEEETTTCCE----EEEECCC-------------SSCEEEEEC--CSSEEEEEETT
T ss_pred             cEEEEEeC--C-CEEEEEeCCCeEEEEECCCCCE----EEEEeCC-------------cCcEEEEEe--cCCEEEEEeCC
Confidence            99999994  5 7899999999999999998876    6788887             788999999  7889999754 


Q ss_pred             CeEEEEec---C---------cceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005          348 MNLKVFRY---E---------PVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       348 ~~i~iwd~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                      |.|++||+   .         ++..+..|..           .+..+..+  ...+++|+.||.|.+|+..
T Consensus       356 g~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~-----------~v~~l~~~--~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          356 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSG-----------RVFRLQFD--EFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             SCEEEEEHHHHTSTTSCTTTTEEEEECCCSS-----------CCCCEEEC--SSCEEECCSSSEEEEEC--
T ss_pred             CcEEEEECCCCCCccccccchheeeccCCCC-----------CeEEEEeC--CCEEEEEeCCCEEEEEECC
Confidence            99999999   2         4555555543           22222221  2248999999999999943

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.6e-31  Score=238.95  Aligned_cols=253  Identities=12%  Similarity=0.037  Sum_probs=190.8

Q ss_pred             eeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccc
Q 014005           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (432)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  174 (432)
                      ..+.+|.            +.|.+++|  +|+|++|++|+.|++|++||+..+..+.+..+..|.           +.|.
T Consensus         3 ~~~~~h~------------~~V~~~~~--s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~-----------~~V~   57 (297)
T 2pm7_B            3 VIANAHN------------EMIHDAVM--DYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHE-----------GPVW   57 (297)
T ss_dssp             EECCSCS------------SCEEEEEE--CTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCS-----------SCEE
T ss_pred             eeccCCc------------CceEEEEE--CCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcccc-----------CCeE
Confidence            4577898            99999999  999999999999999999999765433444555666           8899


Q ss_pred             cccCCCC--CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCCCC
Q 014005          175 NEHNPPS--FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEIS  249 (432)
Q Consensus       175 ~~~~~~~--~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~-~d~~i~lwd~~~~  249 (432)
                      +++|+++  +.++++++.  |+.|++||++.. ...++..+ .+|...|.+++|+|+  +.+|+++ .|+.|++||++..
T Consensus        58 ~v~~s~~~~g~~l~s~s~--D~~v~iWd~~~~-~~~~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~  133 (297)
T 2pm7_B           58 RVDWAHPKFGTILASCSY--DGKVMIWKEENG-RWSQIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN  133 (297)
T ss_dssp             EEEECCGGGCSEEEEEET--TTEEEEEEBSSS-CBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred             EEEecCCCcCCEEEEEcC--CCEEEEEEcCCC-ceEEEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence            9999864  789999998  999999999843 12344555 689999999999997  8899999 9999999999833


Q ss_pred             Cce-eeEeecCCCCcCCCCcceEEEEEcCCC------------CcEEEEEeCCCeEEEEEccccccccccceeecccccc
Q 014005          250 DQC-FNIVDMKPSNMDDLTEVITSAEFHPIY------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES  316 (432)
Q Consensus       250 ~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~  316 (432)
                      ... ...       +.+|...|++++|+|++            .++|++|+.|+.|++||+++++........+.+|   
T Consensus       134 ~~~~~~~-------~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H---  203 (297)
T 2pm7_B          134 GTTSPII-------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH---  203 (297)
T ss_dssp             SCBCCEE-------EECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC---
T ss_pred             Cceeeee-------eecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC---
Confidence            221 222       37899999999999972            1699999999999999998765221124667776   


Q ss_pred             cCCccceeeeecceeEEEEcCCC---CEEEEee-CCeEEEEecCc----ce--eEeecceeeeehhhhhcccccccccce
Q 014005          317 HGSKSFFTEIIASISDIKFANDG---QHLLSRD-YMNLKVFRYEP----VM--TLSFCGIYVWILRQLQHSRFMSIYALS  386 (432)
Q Consensus       317 ~~~~~~~~~~~~~v~~~~~s~dg---~~l~s~~-~~~i~iwd~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (432)
                                ...|.+++|+|++   .+||+++ |++|++||+..    ..  .+..+.         ....+..+..+.
T Consensus       204 ----------~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~---------~~~~v~~~~~s~  264 (297)
T 2pm7_B          204 ----------SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEK---------FPDVLWRASWSL  264 (297)
T ss_dssp             ----------SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSC---------CSSCEEEEEECS
T ss_pred             ----------CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeeccc---------CCCcEEEEEECC
Confidence                      7899999999995   8899975 59999999921    11  111011         011222222222


Q ss_pred             eeEEEEeecccceeeeecc
Q 014005          387 CVIYIITTLYLINLSALSA  405 (432)
Q Consensus       387 ~~~~~~~g~~~~~i~~~~~  405 (432)
                      ...++++|+.|+.|++|+.
T Consensus       265 ~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          265 SGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             SSCCEEEEETTSCEEEEEE
T ss_pred             CCCEEEEEcCCCcEEEEEE
Confidence            2335889999999999984

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.3e-31  Score=252.29  Aligned_cols=277  Identities=11%  Similarity=0.199  Sum_probs=215.6

Q ss_pred             ccCCCc-EEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           29 LQDVDI-VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        29 ~~h~~~-V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ..|.+. +.|+.|  ++++|++|+.||+|++||+.+++                           ....+.+|.      
T Consensus       118 ~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~---------------------------~~~~~~~h~------  162 (464)
T 3v7d_B          118 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK---------------------------FLLQLSGHD------  162 (464)
T ss_dssp             ECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS------
T ss_pred             cCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc---------------------------EEEEEeCCC------
Confidence            467666 577776  46799999999999999998865                           347788999      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCC--CCCcce
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP--PSFAHG  185 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~  185 (432)
                            ..|.+++|  ++++ ++++|+.||+|++||+.+++..  ..+..+.           +.|.+++++  +++.++
T Consensus       163 ------~~V~~l~~--~~~~-~l~s~s~dg~i~vwd~~~~~~~--~~~~~h~-----------~~v~~l~~~~~~~~~~l  220 (464)
T 3v7d_B          163 ------GGVWALKY--AHGG-ILVSGSTDRTVRVWDIKKGCCT--HVFEGHN-----------STVRCLDIVEYKNIKYI  220 (464)
T ss_dssp             ------SCEEEEEE--CSTT-EEEEEETTSCEEEEETTTTEEE--EEECCCS-----------SCEEEEEEEESSSCEEE
T ss_pred             ------cCEEEEEE--cCCC-EEEEEeCCCCEEEEECCCCcEE--EEECCCC-----------CccEEEEEecCCCCCEE
Confidence                  99999999  7777 9999999999999999988743  3344444           788888887  577889


Q ss_pred             ecceeeccceEEEEeecccccce--------------------eeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEE
Q 014005          186 YHLEWTENMATKIANVGNSVHAR--------------------CQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW  244 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~--------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lw  244 (432)
                      ++++.  |+.+++||+.......                    ....+ .+|...+.++  +++++++++| .|+.|++|
T Consensus       221 ~s~s~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~--~~~~~~l~~~~~d~~i~vw  295 (464)
T 3v7d_B          221 VTGSR--DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL-RGHMASVRTV--SGHGNIVVSGSYDNTLIVW  295 (464)
T ss_dssp             EEEET--TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE-CCCSSCEEEE--EEETTEEEEEETTSCEEEE
T ss_pred             EEEcC--CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc-cCccceEEEE--cCCCCEEEEEeCCCeEEEE
Confidence            99988  9999999998432111                    24445 6788888877  5678899999 99999999


Q ss_pred             eCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcccee
Q 014005          245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (432)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~  324 (432)
                      |++ +.+.+..+       .+|...|.+++|+|++ ++|++|+.||.|++||+++++.    +..+.+|           
T Consensus       296 d~~-~~~~~~~~-------~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~----~~~~~~h-----------  351 (464)
T 3v7d_B          296 DVA-QMKCLYIL-------SGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGEL----MYTLQGH-----------  351 (464)
T ss_dssp             ETT-TTEEEEEE-------CCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEE----EEEECCC-----------
T ss_pred             ECC-CCcEEEEe-------cCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcE----EEEEeCC-----------
Confidence            999 67777766       7899999999999999 9999999999999999998876    6888887           


Q ss_pred             eeecceeEEEEcCCCCEEEEee-CCeEEEEec-CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeee
Q 014005          325 EIIASISDIKFANDGQHLLSRD-YMNLKVFRY-EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSA  402 (432)
Q Consensus       325 ~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~  402 (432)
                        ...|.+++|+  +.+|++++ ||.|++||+ .....+..+..          .............++++|+ ||.|.+
T Consensus       352 --~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~-dg~i~i  416 (464)
T 3v7d_B          352 --TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT----------NLSAITTFYVSDNILVSGS-ENQFNI  416 (464)
T ss_dssp             --SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT----------TCCCEEEEEECSSEEEEEE-TTEEEE
T ss_pred             --CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC----------CCccEEEEEeCCCEEEEec-CCeEEE
Confidence              7899999998  57888875 599999999 33333333221          1111111112222577777 899999


Q ss_pred             eccC
Q 014005          403 LSAG  406 (432)
Q Consensus       403 ~~~~  406 (432)
                      |+..
T Consensus       417 wd~~  420 (464)
T 3v7d_B          417 YNLR  420 (464)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9943

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-32  Score=271.94  Aligned_cols=252  Identities=13%  Similarity=0.174  Sum_probs=207.1

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|.+.|++++|+|+|++|++|+.||+|+|||+.++.                         ......+.+|.       
T Consensus         6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-------------------------~~~~~~l~~h~-------   53 (753)
T 3jro_A            6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------------HKLIDTLTGHE-------   53 (753)
T ss_dssp             --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-------------------------EEEEEEECCCS-------
T ss_pred             ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-------------------------CccceeccCCc-------
Confidence            4689999999999999999999999999999998542                         23557888999       


Q ss_pred             hhhhhcceeEEEEEEcCC--CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC--Ccc
Q 014005          109 SLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS--FAH  184 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~  184 (432)
                           +.|.+++|  +++  +++|++|+.||.|++||+.+++.........+.           ..|.+++|+|+  +..
T Consensus        54 -----~~V~~l~~--s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~-----------~~V~~v~~sp~~~~~~  115 (753)
T 3jro_A           54 -----GPVWRVDW--AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS-----------ASVNSVQWAPHEYGPL  115 (753)
T ss_dssp             -----SCEEEEEE--CCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-----------SCEEEEEECCGGGCSE
T ss_pred             -----CceEEEEe--cCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC-----------CCeEEEEECCCCCCCE
Confidence                 99999999  666  999999999999999999988755665666566           78999999999  899


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-------------CCCEEEEE-cCCeEEEEeCCCCC
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-------------DCETFVSA-DDLRINLWNLEISD  250 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~-~d~~i~lwd~~~~~  250 (432)
                      +++++.  ++.|++||++.... .....+ .+|...|.+++|+|             ++..+++| .||.|++||++...
T Consensus       116 l~sgs~--dg~I~vwdl~~~~~-~~~~~~-~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~  191 (753)
T 3jro_A          116 LLVASS--DGKVSVVEFKENGT-TSPIII-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  191 (753)
T ss_dssp             EEEEET--TSEEEEEECCSSSC-CCCEEE-ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT
T ss_pred             EEEEeC--CCcEEEEEeecCCC-cceeEe-ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc
Confidence            999988  99999999985422 233344 68999999999999             58899999 99999999998433


Q ss_pred             ---ceeeEeecCCCCcCCCCcceEEEEEcCC---CCcEEEEEeCCCeEEEEEcccccccc-ccceeecccccccCCccce
Q 014005          251 ---QCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFF  323 (432)
Q Consensus       251 ---~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~h~~~~~~~~~~  323 (432)
                         .....       +.+|...|++++|+|+   + ++|++|+.||.|++||++++.... ........|          
T Consensus       192 ~~~~~~~~-------~~~h~~~V~~l~~sp~~~~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~----------  253 (753)
T 3jro_A          192 QTYVLEST-------LEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF----------  253 (753)
T ss_dssp             TEEEEEEE-------ECCCSSCEEEEEECCCCSSS-EEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCC----------
T ss_pred             ccceeeee-------ecCCCCcEEEEEeccCCCCC-CEEEEEecCCEEEEecCCCCCCcceeEEeccCCC----------
Confidence               22333       3789999999999999   7 999999999999999999864210 002222333          


Q ss_pred             eeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          324 TEIIASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       324 ~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                         ...|.+++|+|+|++|++| .||.|++||+
T Consensus       254 ---~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          254 ---PDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             ---SSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             ---CCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence               6789999999999999997 4599999999

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=6.5e-31  Score=246.96  Aligned_cols=275  Identities=15%  Similarity=0.200  Sum_probs=213.2

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      .++.|+||++ ++||+| .|++|+|||..+++..                         ....+.+|.            
T Consensus       107 y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~-------------------------~~~~~~~~~------------  147 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDIL-------------------------QLLQMEQPG------------  147 (420)
T ss_dssp             TCBCEEECTT-SEEEEE-ETTEEEEEETTTCCEE-------------------------EEEECCSTT------------
T ss_pred             cceeEEECCC-CEEEEE-eCCEEEEEECCCCCEE-------------------------EEEEecCCC------------
Confidence            4678999976 577776 4899999999987632                         112344666            


Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      ..|++++|  +|+|++|++|+.||.|++||+.+++..  ..+..|.           ..+.++.+  ++..+++++.  +
T Consensus       148 ~~V~sv~f--spdg~~lasgs~Dg~v~iWd~~~~~~~--~~~~~h~-----------~~v~~~s~--~~~~l~sgs~--d  208 (420)
T 4gga_A          148 EYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRL--RNMTSHS-----------ARVGSLSW--NSYILSSGSR--S  208 (420)
T ss_dssp             CCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEE--EEECCCS-----------SCEEEEEE--ETTEEEEEET--T
T ss_pred             CcEEEEEE--CCCCCEEEEEECCCeEEEEEcCCCcEE--EEEeCCC-----------CceEEEee--CCCEEEEEeC--C
Confidence            88999999  899999999999999999999988743  3344444           55555554  5678888888  9


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCc---eeeEeecCCCCcCCCCcc
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ---CFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~~  269 (432)
                      +.+++||...  ....+..+ .+|...+..+.++|++++++++ .|+.+++||......   .+..       ...|...
T Consensus       209 ~~i~~~d~~~--~~~~~~~~-~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~-------~~~~~~~  278 (420)
T 4gga_A          209 GHIHHHDVRV--AEHHVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-------FTQHQGA  278 (420)
T ss_dssp             SEEEEEETTS--SSCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEE-------ECCCSSC
T ss_pred             CceeEeeecc--cceeeEEe-cccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeee-------ecccCCc
Confidence            9999999874  23445566 7899999999999999999999 999999999983322   1222       3678899


Q ss_pred             eEEEEEcCCCCcEEEEE--eCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe--
Q 014005          270 ITSAEFHPIYCNLLAYS--SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--  345 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~--  345 (432)
                      |.+++|+|.+..+++++  +.|+.|++||+++++.    ...+..|              ..+.++.|+|+++.|+++  
T Consensus       279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~----~~~~~~~--------------~~v~~~~~~~~~~~lv~~sg  340 (420)
T 4gga_A          279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC----LSAVDAH--------------SQVCSILWSPHYKELISGHG  340 (420)
T ss_dssp             EEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE----EEEEECS--------------SCEEEEEEETTTTEEEEEEC
T ss_pred             eeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc----ceeeccc--------------cceeeeeecCCCCeEEEEEe
Confidence            99999999886777765  4799999999999876    5666664              689999999999988874  


Q ss_pred             -eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          346 -DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       346 -~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                       .++.|+|||+   +++.++..|..           .+..+.......+++||+.|+.|++|+.
T Consensus       341 ~~d~~I~iwd~~~~~~v~~l~gH~~-----------~V~~l~~spdg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          341 FAQNQLVIWKYPTMAKVAELKGHTS-----------RVLSLTMSPDGATVASAAADETLRLWRC  393 (420)
T ss_dssp             TTTCCEEEEETTTCCEEEEECCCSS-----------CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             cCCCEEEEEECCCCcEEEEEcCCCC-----------CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence             3499999999   77888887764           2222222222335899999999999993

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.9e-32  Score=252.15  Aligned_cols=273  Identities=14%  Similarity=0.116  Sum_probs=201.4

Q ss_pred             hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc
Q 014005            6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT   84 (432)
Q Consensus         6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   84 (432)
                      ..+.....|++..... ........|.+.|++++|+| ++++|++++.|+.|++||+++...                  
T Consensus        93 ~~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------------  153 (383)
T 3ei3_B           93 SKGGDIILWDYDVQNK-TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI------------------  153 (383)
T ss_dssp             EBTSCEEEEETTSTTC-EEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE------------------
T ss_pred             cCCCeEEEEeCCCccc-ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce------------------
Confidence            3445566777663111 01111235899999999999 789999999999999999986431                  


Q ss_pred             ccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccc
Q 014005           85 STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE  164 (432)
Q Consensus        85 ~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  164 (432)
                             .......+|.            ..|.+++|  +|++++|++++.|+.|++||+.......   +..+.     
T Consensus       154 -------~~~~~~~~~~------------~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~h~-----  204 (383)
T 3ei3_B          154 -------QVFAKTDSWD------------YWYCCVDV--SVSRQMLATGDSTGRLLLLGLDGHEIFK---EKLHK-----  204 (383)
T ss_dssp             -------EEEECCCCSS------------CCEEEEEE--ETTTTEEEEEETTSEEEEEETTSCEEEE---EECSS-----
T ss_pred             -------EEEeccCCCC------------CCeEEEEE--CCCCCEEEEECCCCCEEEEECCCCEEEE---eccCC-----
Confidence                   1112223344            78999999  8999999999999999999995443333   33344     


Q ss_pred             cccccccccccccCCCCCc-ceecceeeccceEEEEeeccccc-ceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCe
Q 014005          165 NTLLAEKNFMNEHNPPSFA-HGYHLEWTENMATKIANVGNSVH-ARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLR  240 (432)
Q Consensus       165 ~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~  240 (432)
                            ..|.+++|+|++. ++++++.  |+.|++||++.... ..++..+  +|...|.+++|+| ++++++++ .|+.
T Consensus       205 ------~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~  274 (383)
T 3ei3_B          205 ------AKVTHAEFNPRCDWLMATSSV--DATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNE  274 (383)
T ss_dssp             ------SCEEEEEECSSCTTEEEEEET--TSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSE
T ss_pred             ------CcEEEEEECCCCCCEEEEEeC--CCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCc
Confidence                  7899999999999 7888888  99999999984321 4566655  6899999999999 99999999 9999


Q ss_pred             EEEEeCCCCCceeeEeecCCCCcCCCCc----------ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee
Q 014005          241 INLWNLEISDQCFNIVDMKPSNMDDLTE----------VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL  310 (432)
Q Consensus       241 i~lwd~~~~~~~~~~~~~~~~~~~~~~~----------~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  310 (432)
                      |++||++ .......+.........|..          .+..++|+|++ ++  +|+.||.|++||+++++.    +..+
T Consensus       275 i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~~----~~~l  346 (383)
T 3ei3_B          275 IRVYSSY-DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGGL----VHQL  346 (383)
T ss_dssp             EEEEETT-BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEETTTCCE----EEEE
T ss_pred             EEEEECC-CCccccccccccccccccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEecCCCce----eeee
Confidence            9999998 44444443222212222333          33445666665 44  667899999999998876    5777


Q ss_pred             cccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          311 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       311 ~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                      .+|.           +...+..++|+|+|++|++|+|+.|++||+
T Consensus       347 ~~~~-----------~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~  380 (383)
T 3ei3_B          347 RDPN-----------AAGIISLNKFSPTGDVLASGMGFNILIWNR  380 (383)
T ss_dssp             CBTT-----------BCSCCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred             cCCC-----------CCceEEEEEEecCccEEEEecCCcEEEEec
Confidence            7631           146777889999999999998899999997

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-31  Score=241.82  Aligned_cols=272  Identities=11%  Similarity=0.125  Sum_probs=214.2

Q ss_pred             hccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccc
Q 014005            7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST   86 (432)
Q Consensus         7 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (432)
                      .+.....|++..-   +.......|.+.|++++|+|++++|++++.||.|++||+.+++..                   
T Consensus        52 ~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------  109 (369)
T 3zwl_B           52 KDSSASVWYSLNG---ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV-------------------  109 (369)
T ss_dssp             SSSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE-------------------
T ss_pred             CCCEEEEEeCCCc---hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-------------------
Confidence            3445566765421   112223358999999999999999999999999999999887532                   


Q ss_pred             ccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCC-----CeEEEEEccCcceeeeeecCCCCcc
Q 014005           87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND-----KTIKLWKVRDQKVKKIKEMDHFPFV  161 (432)
Q Consensus        87 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~  161 (432)
                              ..+. |.            ..|.+++|  +|+++++++++.+     +.|++||+..+.............+
T Consensus       110 --------~~~~-~~------------~~v~~~~~--~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~  166 (369)
T 3zwl_B          110 --------ATWK-SP------------VPVKRVEF--SPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI  166 (369)
T ss_dssp             --------EEEE-CS------------SCEEEEEE--CTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred             --------EEee-cC------------CCeEEEEE--ccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence                    4444 66            88999999  8999999999998     9999999986642111111100101


Q ss_pred             ccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe
Q 014005          162 SSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR  240 (432)
Q Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~  240 (432)
                      .....+.....+.+++|++++.++++++.  ++.|++||++.  .......+ ..|...|.+++|+|++++|+++ .|+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~  241 (369)
T 3zwl_B          167 HKIITHEGLDAATVAGWSTKGKYIIAGHK--DGKISKYDVSN--NYEYVDSI-DLHEKSISDMQFSPDLTYFITSSRDTN  241 (369)
T ss_dssp             EEEECCTTCCCEEEEEECGGGCEEEEEET--TSEEEEEETTT--TTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             eeccCCcCccceeEEEEcCCCCEEEEEcC--CCEEEEEECCC--CcEeEEEE-ecCCCceeEEEECCCCCEEEEecCCce
Confidence            11111112237899999999999999888  99999999983  15677777 7899999999999999999999 9999


Q ss_pred             EEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC--------------eEEEEEcccccccccc
Q 014005          241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--------------FVRLVDMRQSALCDHS  306 (432)
Q Consensus       241 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~  306 (432)
                      |++||++ .......+       . +...+..++|+|++ +++++++.++              .+++||+.+++.    
T Consensus       242 i~v~d~~-~~~~~~~~-------~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----  307 (369)
T 3zwl_B          242 SFLVDVS-TLQVLKKY-------E-TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE----  307 (369)
T ss_dssp             EEEEETT-TCCEEEEE-------E-CSSCEEEEEECSSS-SEEEEEECCC-------------CEEEEEETTTCCE----
T ss_pred             EEEEECC-CCceeeee-------c-CCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc----
Confidence            9999999 56666655       2 66789999999999 9999999888              899999998876    


Q ss_pred             ceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005          307 ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       307 ~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~  355 (432)
                      +..+.+|             ...|.+++|+|+|++|++++ ||.|++||+
T Consensus       308 ~~~~~~~-------------~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  344 (369)
T 3zwl_B          308 IGRVQGH-------------FGPLNTVAISPQGTSYASGGEDGFIRLHHF  344 (369)
T ss_dssp             EEEEECC-------------SSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred             hhheecc-------------cCcEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            5778886             78999999999999999985 599999999

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-32  Score=263.95  Aligned_cols=249  Identities=12%  Similarity=0.028  Sum_probs=190.6

Q ss_pred             ccccCCCcEEEEEEcCCC---------CEEEE-------------------ecccceEEEEEecCCcCCCCccccchhhh
Q 014005           27 EELQDVDIVSAIEFDKTG---------DYLAV-------------------GDRGGRVILFETVGGKNTPNQHISRSELE   78 (432)
Q Consensus        27 ~~~~h~~~V~~~~fsp~g---------~~l~t-------------------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~   78 (432)
                      ..+.+.+.|.+|+|+|++         ++||+                   ++.|++|+||++++++..           
T Consensus       128 ~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~-----------  196 (524)
T 2j04_B          128 FIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH-----------  196 (524)
T ss_dssp             EEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC-----------
T ss_pred             EEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC-----------
Confidence            345567889999999886         66666                   457889999999876531           


Q ss_pred             ccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCC------CCEEEEEeCCCeEEEEEccCccee--
Q 014005           79 KQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN------GSMFILSTNDKTIKLWKVRDQKVK--  150 (432)
Q Consensus        79 ~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~------~~~l~s~~~d~~i~iwd~~~~~~~--  150 (432)
                                  ......+.+|.            +.|.+++|  +|+      +.+|++++.||+|++||+..+...  
T Consensus       197 ------------~~~~~~l~~~~------------~~V~~v~w--sp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~  250 (524)
T 2j04_B          197 ------------CVKVQTIVHSF------------GEVWDLKW--HEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH  250 (524)
T ss_dssp             ------------EEEEEEEEECC------------CSEEEEEE--CSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred             ------------ceEEEEEEecC------------CcEEEEEE--CCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence                        11123456677            88999999  554      679999999999999999866421  


Q ss_pred             -------eeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeE
Q 014005          151 -------KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINS  223 (432)
Q Consensus       151 -------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~  223 (432)
                             ....+..+.           ..+.+++|+++. .+++|+.  ||.|++||++..  ..+...+ .+|...|.+
T Consensus       251 ~~~~~~~p~~~l~~h~-----------~~v~sv~~s~~~-~lasgs~--DgtV~lWD~~~~--~~~~~~~-~~H~~~V~s  313 (524)
T 2j04_B          251 VFKMCEKPSLTLSLAD-----------SLITTFDFLSPT-TVVCGFK--NGFVAEFDLTDP--EVPSFYD-QVHDSYILS  313 (524)
T ss_dssp             EEECCCSCSEEECCTT-----------TCEEEEEESSSS-EEEEEET--TSEEEEEETTBC--SSCSEEE-ECSSSCEEE
T ss_pred             cceeecCceEEEEcCC-----------CCEEEEEecCCC-eEEEEeC--CCEEEEEECCCC--CCceEEe-ecccccEEE
Confidence                   011222333           789999999864 6888888  999999999832  1334455 789999999


Q ss_pred             E--EeCCCC-CEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC--cceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005          224 I--SNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (432)
Q Consensus       224 ~--~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~  297 (432)
                      +  +|+|++ .+|++| .|++|++||++ ..++...+       .+|.  ..|.+++|+|++ +.|++++.|++|++||+
T Consensus       314 v~~~~s~~g~~~laS~S~D~tvklWD~~-~~~~~~~~-------~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~  384 (524)
T 2j04_B          314 VSTAYSDFEDTVVSTVAVDGYFYIFNPK-DIATTKTT-------VSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPS  384 (524)
T ss_dssp             EEEECCTTSCCEEEEEETTSEEEEECGG-GHHHHCEE-------EEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEET
T ss_pred             EEEEcCCCCCeEEEEeccCCeEEEEECC-CCCccccc-------ccccccCcccceEeCCCc-CeEEEeCCCCcEEEEEC
Confidence            9  578887 889999 99999999998 45554443       3443  247899999998 88999999999999999


Q ss_pred             cccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      +++..    ...+.+|             .+.|++++|+|+|++|++|++ ++|++||+
T Consensus       385 ~~~~~----~~~l~gH-------------~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          385 RAAFA----VHPLVSR-------------ETTITAIGVSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             TCTTC----CEEEEEC-------------SSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred             ccccc----ceeeecC-------------CCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence            98765    4677787             789999999999999999854 99999998

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-31  Score=249.62  Aligned_cols=241  Identities=14%  Similarity=0.176  Sum_probs=199.4

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|.+.|++++|+|+|++|++|+.||.|++||+.+++                           ....+.+|.       
T Consensus       131 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~---------------------------~~~~~~~~~-------  176 (401)
T 4aez_A          131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT---------------------------KLRTMAGHQ-------  176 (401)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------------------------EEEEECCCS-------
T ss_pred             cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe---------------------------EEEEecCCC-------
Confidence            3478899999999999999999999999999998765                           336788898       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           ..|.+++|  +  ++++++++.||.|++||+..... ....+..+.           +.|.+++|+|++.+++++
T Consensus       177 -----~~v~~~~~--~--~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~-----------~~v~~~~~~~~~~~l~s~  235 (401)
T 4aez_A          177 -----ARVGCLSW--N--RHVLSSGSRSGAIHHHDVRIANH-QIGTLQGHS-----------SEVCGLAWRSDGLQLASG  235 (401)
T ss_dssp             -----SCEEEEEE--E--TTEEEEEETTSEEEEEETTSSSC-EEEEEECCS-----------SCEEEEEECTTSSEEEEE
T ss_pred             -----CceEEEEE--C--CCEEEEEcCCCCEEEEecccCcc-eeeEEcCCC-----------CCeeEEEEcCCCCEEEEE
Confidence                 99999999  3  57999999999999999984331 222233344           789999999999999999


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCE-EEEE---cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA---DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~---~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (432)
                      +.  |+.|++||++   ...+...+ ..|...|.+++|+|++.. ++++   .|+.|++||++ .+..+..+        
T Consensus       236 ~~--d~~v~iwd~~---~~~~~~~~-~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~-~~~~~~~~--------  300 (401)
T 4aez_A          236 GN--DNVVQIWDAR---SSIPKFTK-TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA-TGARVNTV--------  300 (401)
T ss_dssp             ET--TSCEEEEETT---CSSEEEEE-CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT-TCCEEEEE--------
T ss_pred             eC--CCeEEEccCC---CCCccEEe-cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC-CCCEEEEE--------
Confidence            98  9999999998   66777777 789999999999997654 4453   49999999999 66666654        


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEe--CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  342 (432)
                      .+...|++++|+|++ +.|++++  .||.|++||+++++...  ...+.+|             ...|.+++|+|+|++|
T Consensus       301 ~~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~~~~~~~~--~~~~~~h-------------~~~v~~~~~s~dg~~l  364 (401)
T 4aez_A          301 DAGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSYSSSGLTK--QVDIPAH-------------DTRVLYSALSPDGRIL  364 (401)
T ss_dssp             ECSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEEETTEEEE--EEEEECC-------------SSCCCEEEECTTSSEE
T ss_pred             eCCCcEEEEEECCCC-CeEEEEeecCCCcEEEEecCCcccee--EEEecCC-------------CCCEEEEEECCCCCEE
Confidence            345679999999999 8888844  89999999999865421  2335565             7899999999999999


Q ss_pred             EEee-CCeEEEEec
Q 014005          343 LSRD-YMNLKVFRY  355 (432)
Q Consensus       343 ~s~~-~~~i~iwd~  355 (432)
                      ++++ ||.|++||+
T Consensus       365 ~s~~~dg~i~iw~~  378 (401)
T 4aez_A          365 STAASDENLKFWRV  378 (401)
T ss_dssp             EEECTTSEEEEEEC
T ss_pred             EEEeCCCcEEEEEC
Confidence            9975 599999999

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.3e-32  Score=249.73  Aligned_cols=251  Identities=12%  Similarity=0.119  Sum_probs=183.6

Q ss_pred             ccCCCcEEEEEEcCCCCEEEE-----------ecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeee
Q 014005           29 LQDVDIVSAIEFDKTGDYLAV-----------GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF   97 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t-----------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~   97 (432)
                      -.|.+.|++++++  ++.+++           |+.|+++|+|+++.....                       .+.....
T Consensus        70 ~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~-----------------------~~~~~~~  124 (365)
T 4h5i_A           70 EDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQ-----------------------LEFLTSV  124 (365)
T ss_dssp             CTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTE-----------------------EEEEEEE
T ss_pred             cCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCce-----------------------EEEeeee
Confidence            3577888888775  445554           456788999998775421                       0111111


Q ss_pred             ecCCccccccchhhhhcceeEEEEEEcCCCCEEEEE--eCCCeEEEEEccCcceeeeeecCCCCcccccccccccccccc
Q 014005           98 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (432)
Q Consensus        98 ~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  175 (432)
                      +...       ....+..+.+++|  +|||++++++  +.|++|++||+.+++......+   .           +.|.+
T Consensus       125 ~~~~-------~~~~~~~~~~v~f--SpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~---~-----------~~V~~  181 (365)
T 4h5i_A          125 DFDA-------STNADDYTKLVYI--SREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET---R-----------GEVKD  181 (365)
T ss_dssp             CSSC-------CCCTTCCEEEEEE--CTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC---S-----------SCCCE
T ss_pred             ceee-------cCCcccCEEEEEE--cCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC---C-----------CceEE
Confidence            1110       0011166889999  9999998765  4789999999998875544332   2           67999


Q ss_pred             ccCCCCCcceecceeeccceEEEEeecccccceeeE-EeecCCCCCeeEEEeCCCCCEEEEE-cCC----eEEEEeCCCC
Q 014005          176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQK-VYPHAHDFNINSISNNSDCETFVSA-DDL----RINLWNLEIS  249 (432)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~-~d~----~i~lwd~~~~  249 (432)
                      ++|+|++.++++++.   +.+.+|+..   .+.... .....|...|.+++|+|+++.++++ .|+    .+++|++...
T Consensus       182 v~fspdg~~l~s~s~---~~~~~~~~~---~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~  255 (365)
T 4h5i_A          182 LHFSTDGKVVAYITG---SSLEVISTV---TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSG  255 (365)
T ss_dssp             EEECTTSSEEEEECS---SCEEEEETT---TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETT
T ss_pred             EEEccCCceEEeccc---eeEEEEEec---cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccc
Confidence            999999999998874   455666655   333332 2225788899999999999999988 666    6888988732


Q ss_pred             CceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccccee-ecccccccCCccceeeeec
Q 014005          250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIA  328 (432)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~~~~  328 (432)
                      ......    ...+.+|...|++++|+|++ ++||+|+.|++|+|||+++++.    +.. +.+|             ..
T Consensus       256 ~~~~~~----~~~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~~----~~~~~~gH-------------~~  313 (365)
T 4h5i_A          256 NTSVLR----SKQVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLSM----SKIFKQAH-------------SF  313 (365)
T ss_dssp             EEEEEE----EEEEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEE----EEEETTSS-------------SS
T ss_pred             eeccee----eeeecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCcE----EEEecCcc-------------cC
Confidence            221110    01237888999999999999 9999999999999999999886    455 4677             88


Q ss_pred             ceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          329 SISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       329 ~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      +|++++|||||++||||+. ++|+|||+
T Consensus       314 ~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          314 AITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            9999999999999999855 99999999

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.7e-31  Score=248.62  Aligned_cols=241  Identities=17%  Similarity=0.255  Sum_probs=198.8

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .|.+.|+||+|+|+|++||+|+.||+|+|||+++++                           .+..+.+|.        
T Consensus       145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~---------------------------~~~~~~~h~--------  189 (420)
T 4gga_A          145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---------------------------RLRNMTSHS--------  189 (420)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS--------
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc---------------------------EEEEEeCCC--------
Confidence            578899999999999999999999999999998876                           347888999        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                          ..+.+++|    ++..+++|+.|+.+++||...... .+..+..+.           ..+..+.+++++.++++++
T Consensus       190 ----~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~-~~~~~~~h~-----------~~~~~~~~~~~g~~l~s~~  249 (420)
T 4gga_A          190 ----ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEH-HVATLSGHS-----------QEVCGLRWAPDGRHLASGG  249 (420)
T ss_dssp             ----SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSC-EEEEEECCS-----------SCEEEEEECTTSSEEEEEE
T ss_pred             ----CceEEEee----CCCEEEEEeCCCceeEeeecccce-eeEEecccc-----------cceeeeeecCCCCeeeeee
Confidence                88998888    467999999999999999876542 223333444           6788899999999999999


Q ss_pred             eeccceEEEEeecccc-cceeeEEeecCCCCCeeEEEeCCCCC-EEEE--E-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005          190 WTENMATKIANVGNSV-HARCQKVYPHAHDFNINSISNNSDCE-TFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~--~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (432)
                      .  |+.+++|+..... ....+... ..|...|.+++|+|.+. .+++  | .|++|++||++ ++.+...+       .
T Consensus       250 ~--D~~v~i~~~~~~~~~~~~~~~~-~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~-t~~~~~~~-------~  318 (420)
T 4gga_A          250 N--DNLVNVWPSAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC-SGACLSAV-------D  318 (420)
T ss_dssp             T--TSCEEEEESSCCSSCSCCSEEE-CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT-TTEEEEEE-------E
T ss_pred             c--cccceEEeeccccccceeeeee-cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC-ccccceee-------c
Confidence            8  9999999987432 22234455 78899999999999755 4444  4 69999999999 67766655       3


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEe--CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  342 (432)
                       +...+.++.|+|++ +.+++++  .|+.|+|||+++++.    +..+.+|             .+.|.+++|+|||++|
T Consensus       319 -~~~~v~~~~~~~~~-~~lv~~sg~~d~~I~iwd~~~~~~----v~~l~gH-------------~~~V~~l~~spdg~~l  379 (420)
T 4gga_A          319 -AHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAK----VAELKGH-------------TSRVLSLTMSPDGATV  379 (420)
T ss_dssp             -CSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCCE----EEEECCC-------------SSCEEEEEECTTSSCE
T ss_pred             -cccceeeeeecCCC-CeEEEEEecCCCEEEEEECCCCcE----EEEEcCC-------------CCCEEEEEEcCCCCEE
Confidence             33568999999998 7676654  799999999999886    6889998             8899999999999999


Q ss_pred             EEee-CCeEEEEec
Q 014005          343 LSRD-YMNLKVFRY  355 (432)
Q Consensus       343 ~s~~-~~~i~iwd~  355 (432)
                      +||+ |++|+|||+
T Consensus       380 ~S~s~D~tvriWdv  393 (420)
T 4gga_A          380 ASAAADETLRLWRC  393 (420)
T ss_dssp             EEEETTTEEEEECC
T ss_pred             EEEecCCeEEEEEC
Confidence            9974 599999999

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.5e-31  Score=244.45  Aligned_cols=262  Identities=10%  Similarity=0.066  Sum_probs=203.3

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|.+.|++++|+|++++|++++.||.|++||+++++..                         ....+..|.       
T Consensus        49 ~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------------------------~~~~~~~~~-------   96 (372)
T 1k8k_C           49 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK-------------------------PTLVILRIN-------   96 (372)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE-------------------------EEEECCCCS-------
T ss_pred             cCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee-------------------------eeEEeecCC-------
Confidence            368899999999999999999999999999999876421                         223446677       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceee-eee-cCCCCccccccccccccccccccCCCCCccee
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK-IKE-MDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                           ..|.+++|  +|++++|++++.|+.|++||+..+.... ... ...+.           ..+.+++|+|++.+++
T Consensus        97 -----~~v~~~~~--~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~l~  158 (372)
T 1k8k_C           97 -----RAARCVRW--APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR-----------STVLSLDWHPNSVLLA  158 (372)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC-----------SCEEEEEECTTSSEEE
T ss_pred             -----CceeEEEE--CCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccC-----------CCeeEEEEcCCCCEEE
Confidence                 89999999  8999999999999999999998775211 111 12233           7899999999999999


Q ss_pred             cceeeccceEEEEeecc---------------cccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC
Q 014005          187 HLEWTENMATKIANVGN---------------SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD  250 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~---------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~  250 (432)
                      +++.  ++.+++||++.               ....+++..+ ..|...|.+++|+|++++++++ .|+.|++||++ .+
T Consensus       159 ~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~  234 (372)
T 1k8k_C          159 AGSC--DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD-KK  234 (372)
T ss_dssp             EEET--TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG-GT
T ss_pred             EEcC--CCCEEEEEcccccccccccccccccccchhhheEec-CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC-CC
Confidence            9988  99999999642               1145677777 7899999999999999999999 99999999999 56


Q ss_pred             ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc--cccccccceeecccc--------------
Q 014005          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ--SALCDHSARILRDAA--------------  314 (432)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~h~--------------  314 (432)
                      +.+..+       ..|...|.+++|+|++ .+|++| .|+.|++||+++  ++...  ...+..+.              
T Consensus       235 ~~~~~~-------~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  303 (372)
T 1k8k_C          235 MAVATL-------ASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSF--GGRLDVPKQSSQRGLTARERFQ  303 (372)
T ss_dssp             TEEEEE-------ECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEE--CCCCCCC--------CHHHHHH
T ss_pred             ceeEEE-------ccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEEE--eeccCccccchhhhcchhhhhh
Confidence            677665       6788899999999998 888877 899999999987  43100  11110000              


Q ss_pred             --c--c-----cCC-ccceeeeecceeEEEEc-CCC---CEEEEee-CCeEEEEec
Q 014005          315 --E--S-----HGS-KSFFTEIIASISDIKFA-NDG---QHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       315 --~--~-----~~~-~~~~~~~~~~v~~~~~s-~dg---~~l~s~~-~~~i~iwd~  355 (432)
                        .  .     |.. .....+|...|++++|+ ++|   .+|++|+ ||.|++||+
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          304 NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             HCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             hcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence              0  0     000 11113458899999966 677   9999975 599999999

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-32  Score=257.49  Aligned_cols=289  Identities=9%  Similarity=0.003  Sum_probs=203.8

Q ss_pred             hhccccchhhhhhhhcCCCC---CccccCCCcEEEEEEcCC------CCEEEEecccceEEEEEecCCcCCCCccccchh
Q 014005            6 EEASASLEWKCSQAFGERNP---DEELQDVDIVSAIEFDKT------GDYLAVGDRGGRVILFETVGGKNTPNQHISRSE   76 (432)
Q Consensus         6 ~~~~~~~~w~~~~~~~~~~~---~~~~~h~~~V~~~~fsp~------g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~   76 (432)
                      ..+.....|++..  ++...   .....|.+.|++++|+|+      +.+||+|+.||+|+|||+.+++....    . .
T Consensus       180 s~D~tI~iWd~~~--~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~----~-~  252 (524)
T 2j04_B          180 KHSSCIQIFKMNT--STLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH----V-F  252 (524)
T ss_dssp             --CEEEEEEEEET--TTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS----E-E
T ss_pred             CCCceEEEEEccC--CCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc----c-c
Confidence            3445566787643  11100   112346789999999997      57999999999999999987542100    0 0


Q ss_pred             hhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecC
Q 014005           77 LEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD  156 (432)
Q Consensus        77 ~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  156 (432)
                                .. .......+.+|.            ..|.+++|  +++ ..|++|+.||+|++||+.++... ...+.
T Consensus       253 ----------~~-~~~p~~~l~~h~------------~~v~sv~~--s~~-~~lasgs~DgtV~lWD~~~~~~~-~~~~~  305 (524)
T 2j04_B          253 ----------KM-CEKPSLTLSLAD------------SLITTFDF--LSP-TTVVCGFKNGFVAEFDLTDPEVP-SFYDQ  305 (524)
T ss_dssp             ----------EC-CCSCSEEECCTT------------TCEEEEEE--SSS-SEEEEEETTSEEEEEETTBCSSC-SEEEE
T ss_pred             ----------ee-ecCceEEEEcCC------------CCEEEEEe--cCC-CeEEEEeCCCEEEEEECCCCCCc-eEEee
Confidence                      00 011224677888            99999999  665 48999999999999999876321 11233


Q ss_pred             CCCccccccccccccccccc--cCCCCC-cceecceeeccceEEEEeecccccceeeEEeecCCC--CCeeEEEeCCCCC
Q 014005          157 HFPFVSSENTLLAEKNFMNE--HNPPSF-AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHD--FNINSISNNSDCE  231 (432)
Q Consensus       157 ~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~  231 (432)
                      .|.           ..|.++  +|++++ .++++++.  |+++++||++   ..++...+ .+|.  ..|.+++|+|+++
T Consensus       306 ~H~-----------~~V~sv~~~~s~~g~~~laS~S~--D~tvklWD~~---~~~~~~~~-~~~~~~~~v~~v~fsp~~~  368 (524)
T 2j04_B          306 VHD-----------SYILSVSTAYSDFEDTVVSTVAV--DGYFYIFNPK---DIATTKTT-VSRFRGSNLVPVVYCPQIY  368 (524)
T ss_dssp             CSS-----------SCEEEEEEECCTTSCCEEEEEET--TSEEEEECGG---GHHHHCEE-EEECSCCSCCCEEEETTTT
T ss_pred             ccc-----------ccEEEEEEEcCCCCCeEEEEecc--CCeEEEEECC---CCCccccc-ccccccCcccceEeCCCcC
Confidence            344           788888  688887 88899998  9999999998   55555555 3443  3588999999999


Q ss_pred             EEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccc----
Q 014005          232 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS----  306 (432)
Q Consensus       232 ~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----  306 (432)
                      .++++ .|++|++||++ ...+...+       .+|.+.|++++|+|++ ++|++|+.||+|++||+..+......    
T Consensus       369 ~l~s~~~d~tv~lwd~~-~~~~~~~l-------~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~  439 (524)
T 2j04_B          369 SYIYSDGASSLRAVPSR-AAFAVHPL-------VSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARRLLHGIKNSSA  439 (524)
T ss_dssp             EEEEECSSSEEEEEETT-CTTCCEEE-------EECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSSTTTCC-----
T ss_pred             eEEEeCCCCcEEEEECc-ccccceee-------ecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHhhccccccCcc
Confidence            99999 99999999999 56665555       7899999999999999 89999999999999997643211000    


Q ss_pred             ----ceeecccccccC--------------------CccceeeeecceeEEEEcCCCC---EEEEeeC-CeEEEEec
Q 014005          307 ----ARILRDAAESHG--------------------SKSFFTEIIASISDIKFANDGQ---HLLSRDY-MNLKVFRY  355 (432)
Q Consensus       307 ----~~~~~~h~~~~~--------------------~~~~~~~~~~~v~~~~~s~dg~---~l~s~~~-~~i~iwd~  355 (432)
                          ...+.- ..++.                    ....+.+|...|.+++|+|++.   +||+|+. |.|+||++
T Consensus       440 ~~~~~~v~~v-~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l  515 (524)
T 2j04_B          440 TQKSLRLWKW-DYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYL  515 (524)
T ss_dssp             -CCCCEEEEC-BCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred             ceeeeEEEEe-ccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence                000011 11111                    1134566888999999999954   9999866 99999998

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.3e-31  Score=248.63  Aligned_cols=278  Identities=12%  Similarity=0.130  Sum_probs=213.3

Q ss_pred             hhccccchhhhhhhhcC-CCCCccccCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccc
Q 014005            6 EEASASLEWKCSQAFGE-RNPDEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF   83 (432)
Q Consensus         6 ~~~~~~~~w~~~~~~~~-~~~~~~~~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   83 (432)
                      ..+.....|.+.+.-.. ........|.+.|++++|+| ++++|++|+.||+|+|||+.++....               
T Consensus        54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~---------------  118 (402)
T 2aq5_A           54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL---------------  118 (402)
T ss_dssp             SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS---------------
T ss_pred             cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc---------------
Confidence            34455667776542111 12223446999999999999 99999999999999999998864220               


Q ss_pred             cccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCC-CEEEEEeCCCeEEEEEccCcceeeeeecCCCCccc
Q 014005           84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS  162 (432)
Q Consensus        84 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  162 (432)
                           ........+.+|.            ..|.+++|  +|++ .+|++++.|+.|++||+.+++.........+.   
T Consensus       119 -----~~~~~~~~~~~h~------------~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---  176 (402)
T 2aq5_A          119 -----PLREPVITLEGHT------------KRVGIVAW--HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP---  176 (402)
T ss_dssp             -----CBCSCSEEEECCS------------SCEEEEEE--CSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCC---
T ss_pred             -----ccCCceEEecCCC------------CeEEEEEE--CcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCC---
Confidence                 0112446788999            99999999  8897 69999999999999999988744333213444   


Q ss_pred             cccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCC-eeEEEeCCCCCEEEEE----c
Q 014005          163 SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFN-INSISNNSDCETFVSA----D  237 (432)
Q Consensus       163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~----~  237 (432)
                              ..+.+++|+|++.++++++.  |+.+++||++   ..+++..+...|.+. +.+++|+|+++++++|    .
T Consensus       177 --------~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~  243 (402)
T 2aq5_A          177 --------DTIYSVDWSRDGALICTSCR--DKRVRVIEPR---KGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS  243 (402)
T ss_dssp             --------SCEEEEEECTTSSCEEEEET--TSEEEEEETT---TTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTC
T ss_pred             --------CceEEEEECCCCCEEEEEec--CCcEEEEeCC---CCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCC
Confidence                    78999999999999999998  9999999998   667777663466665 8999999999999987    6


Q ss_pred             CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEE-EEeCCCeEEEEEccccccccccceeecccccc
Q 014005          238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAES  316 (432)
Q Consensus       238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~  316 (432)
                      |+.|++||++.........      ...+...+.+++|+|++ ++|+ +|+.||.|++||+++++..   +..+..|.  
T Consensus       244 d~~i~iwd~~~~~~~~~~~------~~~~~~~v~~~~~s~~~-~~l~~~g~~dg~i~i~d~~~~~~~---~~~l~~~~--  311 (402)
T 2aq5_A          244 ERQVALWDTKHLEEPLSLQ------ELDTSSGVLLPFFDPDT-NIVYLCGKGDSSIRYFEITSEAPF---LHYLSMFS--  311 (402)
T ss_dssp             CEEEEEEETTBCSSCSEEE------ECCCCSSCEEEEEETTT-TEEEEEETTCSCEEEEEECSSTTC---EEEEEEEC--
T ss_pred             CceEEEEcCccccCCceEE------eccCCCceeEEEEcCCC-CEEEEEEcCCCeEEEEEecCCCcc---eEeecccc--
Confidence            8999999999444333332      13566779999999999 7775 5557999999999987742   23443320  


Q ss_pred             cCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          317 HGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       317 ~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                               +...|.+++|+|++.++++++ +.+++|++
T Consensus       312 ---------~~~~v~~~~~sp~~~~~~s~~-~~~~~~~l  340 (402)
T 2aq5_A          312 ---------SKESQRGMGYMPKRGLEVNKC-EIARFYKL  340 (402)
T ss_dssp             ---------CSSCCSEEEECCGGGSCGGGT-EEEEEEEE
T ss_pred             ---------cCCcccceEEecccccceecc-eeEEEEEc
Confidence                     147899999999999988644 69999999

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=9.1e-31  Score=238.56  Aligned_cols=275  Identities=16%  Similarity=0.251  Sum_probs=206.0

Q ss_pred             cchhhccccchhhhhhhhcCC--CCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcc
Q 014005            3 LNREEASASLEWKCSQAFGER--NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQ   80 (432)
Q Consensus         3 ~~~~~~~~~~~w~~~~~~~~~--~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   80 (432)
                      +++..+.....|++.......  .......|.+.|++++|+|+|++|++|+.|+.|++|+......              
T Consensus        55 ~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~--------------  120 (340)
T 4aow_A           55 LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT--------------  120 (340)
T ss_dssp             EEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--------------
T ss_pred             EEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccce--------------
Confidence            344555667788876421111  1112346899999999999999999999999999999877642              


Q ss_pred             ccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCc
Q 014005           81 MDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF  160 (432)
Q Consensus        81 ~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  160 (432)
                                   ......+.            ..+..+.+  ++++.+|++++.|+.+++||+...... ......+. 
T Consensus       121 -------------~~~~~~~~------------~~~~~~~~--~~~~~~l~s~s~d~~~~~~d~~~~~~~-~~~~~~~~-  171 (340)
T 4aow_A          121 -------------TRRFVGHT------------KDVLSVAF--SSDNRQIVSGSRDKTIKLWNTLGVCKY-TVQDESHS-  171 (340)
T ss_dssp             -------------EEEEECCS------------SCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCEEE-EECSSSCS-
T ss_pred             -------------eeeecCCC------------CceeEEEE--eecCccceeecCCCeEEEEEeCCCceE-EEEecccc-
Confidence                         24455555            67788888  899999999999999999998765432 22233333 


Q ss_pred             cccccccccccccccccCCCCCc--ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c
Q 014005          161 VSSENTLLAEKNFMNEHNPPSFA--HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D  237 (432)
Q Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~  237 (432)
                                ..+..++|+++..  .+++++.  ++.+++||++   ..++...+ .+|.+.|++++|+|++++|++| .
T Consensus       172 ----------~~v~~~~~~~~~~~~~~~s~~~--d~~i~i~d~~---~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~  235 (340)
T 4aow_A          172 ----------EWVSCVRFSPNSSNPIIVSCGW--DKLVKVWNLA---NCKLKTNH-IGHTGYLNTVTVSPDGSLCASGGK  235 (340)
T ss_dssp             ----------SCEEEEEECSCSSSCEEEEEET--TSCEEEEETT---TTEEEEEE-CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ----------CcccceEEccCCCCcEEEEEcC--CCEEEEEECC---CCceeeEe-cCCCCcEEEEEECCCCCEEEEEeC
Confidence                      5677777777654  4555655  9999999998   77788888 8999999999999999999999 9


Q ss_pred             CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccccc
Q 014005          238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH  317 (432)
Q Consensus       238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~  317 (432)
                      |+.|++||++ ....+..+       . +...|.+++|+|++ .+ ++++.|+.|++||++++..    ...+..+.   
T Consensus       236 Dg~i~iwd~~-~~~~~~~~-------~-~~~~v~~~~~~~~~-~~-~~~~~d~~i~iwd~~~~~~----~~~~~~~~---  297 (340)
T 4aow_A          236 DGQAMLWDLN-EGKHLYTL-------D-GGDIINALCFSPNR-YW-LCAATGPSIKIWDLEGKII----VDELKQEV---  297 (340)
T ss_dssp             TCEEEEEETT-TTEEEEEE-------E-CSSCEEEEEECSSS-SE-EEEEETTEEEEEETTTTEE----EEEECCC----
T ss_pred             CCeEEEEEec-cCceeeee-------c-CCceEEeeecCCCC-ce-eeccCCCEEEEEECCCCeE----EEeccccc---
Confidence            9999999999 56666654       3 34579999999987 55 4566799999999987654    23333210   


Q ss_pred             CCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005          318 GSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       318 ~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~  355 (432)
                       .......|...|++++|+|||++|++|+ ||.|+|||+
T Consensus       298 -~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~  335 (340)
T 4aow_A          298 -ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV  335 (340)
T ss_dssp             -------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             -eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence             0011223478999999999999999975 599999998

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.9e-32  Score=256.46  Aligned_cols=274  Identities=13%  Similarity=0.141  Sum_probs=195.8

Q ss_pred             hhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccc
Q 014005            5 REEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF   83 (432)
Q Consensus         5 ~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   83 (432)
                      +..+.....|++... ..........|.+.|++|+|+| ++++|++|+.||+|+|||++++..                 
T Consensus       138 Gs~dg~i~lWd~~~~-~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-----------------  199 (435)
T 4e54_B          138 GSKGGDIMLWNFGIK-DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-----------------  199 (435)
T ss_dssp             EETTSCEEEECSSCC-SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-----------------
T ss_pred             EeCCCEEEEEECCCC-CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-----------------
Confidence            345566777876531 1111223457999999999998 689999999999999999976532                 


Q ss_pred             cccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccc
Q 014005           84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS  163 (432)
Q Consensus        84 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  163 (432)
                                 ..+..+..         ....+.+++|  ++++.+|++|+.||.|++||+.+..+.   .+..|.    
T Consensus       200 -----------~~~~~~~~---------~~~~~~~~~~--~~~~~~l~~g~~dg~i~~wd~~~~~~~---~~~~h~----  250 (435)
T 4e54_B          200 -----------RVFASSDT---------INIWFCSLDV--SASSRMVVTGDNVGNVILLNMDGKELW---NLRMHK----  250 (435)
T ss_dssp             -----------EEEECCSS---------CSCCCCCEEE--ETTTTEEEEECSSSBEEEEESSSCBCC---CSBCCS----
T ss_pred             -----------eEEeccCC---------CCccEEEEEE--CCCCCEEEEEeCCCcEeeeccCcceeE---EEeccc----
Confidence                       12222210         0056788999  899999999999999999999765433   334444    


Q ss_pred             ccccccccccccccCCCCCc-ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeE
Q 014005          164 ENTLLAEKNFMNEHNPPSFA-HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRI  241 (432)
Q Consensus       164 ~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i  241 (432)
                             ..|.+++|+|++. ++++++.  |+.|++||++........... .+|...|++++|+|++++|+++ .|+.|
T Consensus       251 -------~~v~~v~~~p~~~~~~~s~s~--d~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~spdg~~l~s~~~D~~i  320 (435)
T 4e54_B          251 -------KKVTHVALNPCCDWFLATASV--DQTVKIWDLRQVRGKASFLYS-LPHRHPVNAACFSPDGARLLTTDQKSEI  320 (435)
T ss_dssp             -------SCEEEEEECTTCSSEEEEEET--TSBCCEEETTTCCSSSCCSBC-CBCSSCEEECCBCTTSSEEEEEESSSCE
T ss_pred             -------ceEEeeeecCCCceEEEEecC--cceeeEEecccccccceEEEe-eeccccccceeECCCCCeeEEEcCCCEE
Confidence                   7899999999976 5667777  999999999854222222222 5789999999999999999999 99999


Q ss_pred             EEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe------------CCCeEEEEEcccccccccccee
Q 014005          242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS------------SRGFVRLVDMRQSALCDHSARI  309 (432)
Q Consensus       242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~  309 (432)
                      ++||++ .+.....+......... ...+....|+|++ .+++++.            .++.|++||..+++.    +..
T Consensus       321 ~iwd~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~----~~~  393 (435)
T 4e54_B          321 RVYSAS-QWDCPLGLIPHPHRHFQ-HLTPIKAAWHPRY-NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM----MCQ  393 (435)
T ss_dssp             EEEESS-SSSSEEEECCCCCCCCS-SSCCCBCEECSSS-SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE----EEE
T ss_pred             EEEECC-CCccceEEecccccccc-cceeEEEEEcCCC-CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE----EEE
Confidence            999999 44444433111111111 1123345677776 5555554            345799999999876    444


Q ss_pred             ec-ccccccCCccceeeeecceeEE-EEcCCCCEEEEeeCCeEEEEec
Q 014005          310 LR-DAAESHGSKSFFTEIIASISDI-KFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       310 ~~-~h~~~~~~~~~~~~~~~~v~~~-~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                      +. +|             ...|.++ +|+|+|++|++|+++.|+|||+
T Consensus       394 l~~~~-------------~~~v~s~~~fspdg~~lasg~d~~i~iW~~  428 (435)
T 4e54_B          394 LYDPE-------------SSGISSLNEFNPMGDTLASAMGYHILIWSQ  428 (435)
T ss_dssp             ECCSS-------------CCCCCCEEEECTTSSCEEEECSSEEEECCC
T ss_pred             EeCCC-------------CCcEEEEEEECCCCCEEEEEcCCcEEEEEC
Confidence            43 44             6778877 6999999999998899999998

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.2e-30  Score=262.97  Aligned_cols=176  Identities=10%  Similarity=0.094  Sum_probs=138.2

Q ss_pred             hccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccc
Q 014005            7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST   86 (432)
Q Consensus         7 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (432)
                      .+.....|.....    .....+.|...|++++|+| |++|++++.|++|+|||+++++..                   
T Consensus        37 ~Dg~I~lw~~~~~----~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~-------------------   92 (902)
T 2oaj_A           37 VTGEVHIYGQQQV----EVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVL-------------------   92 (902)
T ss_dssp             TTSEEEEECSTTC----EEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEE-------------------
T ss_pred             CCCEEEEEeCCCc----EEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEE-------------------
Confidence            3445556654321    1122345788999999999 889999999999999999886532                   


Q ss_pred             ccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeee---------eecCC
Q 014005           87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI---------KEMDH  157 (432)
Q Consensus        87 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~---------~~~~~  157 (432)
                              ..+. |.            ..|++++|  +|+++++++|+.||.|++||+.++++...         .....
T Consensus        93 --------~~~~-~~------------~~V~~v~~--sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~  149 (902)
T 2oaj_A           93 --------TTVF-VP------------GKITSIDT--DASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAA  149 (902)
T ss_dssp             --------EEEE-CS------------SCEEEEEC--CTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSS
T ss_pred             --------EEEc-CC------------CCEEEEEE--CCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccccc
Confidence                    4443 55            78999999  89999999999999999999998765321         11223


Q ss_pred             CCccccccccccccccccccCCCC-CcceecceeeccceEEEEeecccccceeeEEeecCC------------------C
Q 014005          158 FPFVSSENTLLAEKNFMNEHNPPS-FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAH------------------D  218 (432)
Q Consensus       158 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~------------------~  218 (432)
                      |.           +.|.+++|+|+ ...++++..  ++.+ +||++   ..++++.+ ..|                  .
T Consensus       150 h~-----------~~V~sl~~sp~~~~~l~~g~~--dg~v-lWd~~---~~~~~~~~-~~~~~~g~~~~~~~~~~~~~h~  211 (902)
T 2oaj_A          150 RL-----------SPIVSIQWNPRDIGTVLISYE--YVTL-TYSLV---ENEIKQSF-IYELPPFAPGGDFSEKTNEKRT  211 (902)
T ss_dssp             CC-----------CCCCEEEEETTEEEEEEEECS--SCEE-EEETT---TTEEEEEE-CCCBCTTCCCSTTCCCTTSCBC
T ss_pred             CC-----------CCeEEEEEccCCCCEEEEEeC--CCcE-EEECC---CCceEEEE-ecccCCcCCCcccccccccccC
Confidence            33           78999999996 467777777  9999 99998   66777776 433                  5


Q ss_pred             CCeeEEEeCCCCCEEEEE-cCCeEEEEeCC
Q 014005          219 FNINSISNNSDCETFVSA-DDLRINLWNLE  247 (432)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~  247 (432)
                      ..|++++|+|+|++|++| .|++|++||++
T Consensus       212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~  241 (902)
T 2oaj_A          212 PKVIQSLYHPNSLHIITIHEDNSLVFWDAN  241 (902)
T ss_dssp             CCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence            779999999999999999 99999999997

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.98  E-value=2.4e-30  Score=238.22  Aligned_cols=295  Identities=14%  Similarity=0.112  Sum_probs=211.3

Q ss_pred             ccCCCcEEEEEEcCC---CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           29 LQDVDIVSAIEFDKT---GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~---g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ..|.+.|++++|+|+   |++|++|+.||.|+|||+++...                         .....+.+|.    
T Consensus        36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-------------------------~~~~~~~~h~----   86 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-------------------------TIPKAQQMHT----   86 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-------------------------EEEEEEEECS----
T ss_pred             cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-------------------------eeEEEecccc----
Confidence            368999999999999   69999999999999999987321                         1235678898    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccC--CCCCc
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN--PPSFA  183 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~  183 (432)
                              ..|.+++|  +|++++|++++.||.|++||+.+++......   +.           ..+.+++|  ++++.
T Consensus        87 --------~~v~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~-----------~~v~~~~~~~~~~~~  142 (368)
T 3mmy_A           87 --------GPVLDVCW--SDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ---HD-----------APVKTIHWIKAPNYS  142 (368)
T ss_dssp             --------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CS-----------SCEEEEEEEECSSCE
T ss_pred             --------CCEEEEEE--CcCCCEEEEEcCCCcEEEEEcCCCCceeecc---cc-----------CceEEEEEEeCCCCC
Confidence                    99999999  8999999999999999999999887655443   23           78999999  99999


Q ss_pred             ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (432)
                      ++++++.  |+.+++||++   ..+++..+ ..+ ..+.++.+.+  ..++++ .++.+.+|+++.........      
T Consensus       143 ~l~~~~~--dg~i~vwd~~---~~~~~~~~-~~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~------  207 (368)
T 3mmy_A          143 CVMTGSW--DKTLKFWDTR---SSNPMMVL-QLP-ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRI------  207 (368)
T ss_dssp             EEEEEET--TSEEEEECSS---CSSCSEEE-ECS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEEC------
T ss_pred             EEEEccC--CCcEEEEECC---CCcEEEEE-ecC-CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhc------
Confidence            9999998  9999999998   56666666 333 3566666654  467777 99999999999444433332      


Q ss_pred             cCCCCcceEEEEEcCCC---CcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC
Q 014005          263 MDDLTEVITSAEFHPIY---CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (432)
Q Consensus       263 ~~~~~~~v~~~~~~p~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg  339 (432)
                      ...+...+.++.+.++.   +..+++++.||.|++||++.... ......+..|... ........+...|.+++|+|+|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~  285 (368)
T 3mmy_A          208 ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP-AKDNFTFKCHRSN-GTNTSAPQDIYAVNGIAFHPVH  285 (368)
T ss_dssp             CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH-HHHSEEEECSEEC-----CCCEEECCEEEEEECTTT
T ss_pred             cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc-cccceeeeeeecc-cccccccccccceEEEEEecCC
Confidence            12333445666665544   12399999999999999987632 0114667775111 1111112233479999999999


Q ss_pred             CEEEEee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          340 QHLLSRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       340 ~~l~s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      ++|++|+ ||.|++||+   +++..+..|..           .+..+.......++++|+.|+....|+
T Consensus       286 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          286 GTLATVGSDGRFSFWDKDARTKLKTSEQLDQ-----------PISACCFNHNGNIFAYASSYDWSKGHE  343 (368)
T ss_dssp             CCEEEEETTSCEEEEETTTTEEEEECCCCSS-----------CEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred             CEEEEEccCCeEEEEECCCCcEEEEecCCCC-----------CceEEEECCCCCeEEEEeccccccccc
Confidence            9999975 599999999   45555554432           233322222333577777776554444

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.98  E-value=6.5e-31  Score=248.34  Aligned_cols=301  Identities=11%  Similarity=0.081  Sum_probs=215.2

Q ss_pred             chhhccccchhhhhhhhcC--CCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEec---CCcCCCCccccchhhh
Q 014005            4 NREEASASLEWKCSQAFGE--RNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETV---GGKNTPNQHISRSELE   78 (432)
Q Consensus         4 ~~~~~~~~~~w~~~~~~~~--~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~---~~~~~~~~~~~~~~~~   78 (432)
                      .+..+.....|++......  ......+.|.+.|++++|+|++++|++|+.||+|++||++   .++..       ..+.
T Consensus        81 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~~  153 (437)
T 3gre_A           81 TGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV-------KFLN  153 (437)
T ss_dssp             EEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE-------EEEE
T ss_pred             EecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee-------eccc
Confidence            3445566778887752211  1123344789999999999999999999999999999995   33211       0000


Q ss_pred             ccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCC
Q 014005           79 KQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHF  158 (432)
Q Consensus        79 ~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  158 (432)
                                  ...+..+..+.        ......+.++.+.+++++.++++++.|+.|++||+.+++.........+
T Consensus       154 ------------~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h  213 (437)
T 3gre_A          154 ------------CECIRKINLKN--------FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPR  213 (437)
T ss_dssp             ------------EEEEEEEEGGG--------GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred             ------------cceeEEEEccC--------cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence                        00111111110        0012778888876689999999999999999999998875433332113


Q ss_pred             CccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeC----CCCCEEE
Q 014005          159 PFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN----SDCETFV  234 (432)
Q Consensus       159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~  234 (432)
                      .           +.|.+++|+|++.++++++.  |+.|++||++   ..+++..+...|...|.+++|+    |++.+++
T Consensus       214 ~-----------~~v~~~~~s~~~~~l~s~~~--dg~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~  277 (437)
T 3gre_A          214 H-----------GAVSSICIDEECCVLILGTT--RGIIDIWDIR---FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV  277 (437)
T ss_dssp             G-----------CCEEEEEECTTSCEEEEEET--TSCEEEEETT---TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred             C-----------CceEEEEECCCCCEEEEEcC--CCeEEEEEcC---CccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence            3           78999999999999999998  9999999999   6788887744788899999655    5677999


Q ss_pred             EE-cCCeEEEEeCCCCCceeeEeecCCC-----------------CcCC--CCcceEEEEEcCCCCcEEEEEeCCCeEEE
Q 014005          235 SA-DDLRINLWNLEISDQCFNIVDMKPS-----------------NMDD--LTEVITSAEFHPIYCNLLAYSSSRGFVRL  294 (432)
Q Consensus       235 ~~-~d~~i~lwd~~~~~~~~~~~~~~~~-----------------~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  294 (432)
                      +| .|+.|++||++ .+++...+.....                 .+.+  |...|++++|+ ++ ++|++|+.||.|++
T Consensus       278 s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~  354 (437)
T 3gre_A          278 GGSSKTFLTIWNFV-KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVM  354 (437)
T ss_dssp             EESTTEEEEEEETT-TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEE
T ss_pred             EEcCCCcEEEEEcC-CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEE
Confidence            99 99999999999 6666665532110                 1223  77889999999 76 89999999999999


Q ss_pred             EEccccccccccceeeccccccc------------------------CCccceeeeecceeEEEEcCC--CCEEEEeeC-
Q 014005          295 VDMRQSALCDHSARILRDAAESH------------------------GSKSFFTEIIASISDIKFAND--GQHLLSRDY-  347 (432)
Q Consensus       295 wd~~~~~~~~~~~~~~~~h~~~~------------------------~~~~~~~~~~~~v~~~~~s~d--g~~l~s~~~-  347 (432)
                      ||+++++.    ...+.+|....                        ........|...|.+++|+++  +.+|++|+. 
T Consensus       355 wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d  430 (437)
T 3gre_A          355 FSLNELSS----SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNS  430 (437)
T ss_dssp             EETTCGGG----CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETT
T ss_pred             EECCCccc----ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCC
Confidence            99998876    46665541100                        000112337889999999998  779999865 


Q ss_pred             CeEEEEe
Q 014005          348 MNLKVFR  354 (432)
Q Consensus       348 ~~i~iwd  354 (432)
                      |.|+||+
T Consensus       431 G~I~iw~  437 (437)
T 3gre_A          431 GLIGIFQ  437 (437)
T ss_dssp             SCEEEEC
T ss_pred             ceEEEeC
Confidence            9999995

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.98  E-value=5.8e-30  Score=230.97  Aligned_cols=278  Identities=15%  Similarity=0.174  Sum_probs=205.9

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      ..++|+||+++ +||+| .|++|+|||+++++..                         ....+.+|.            
T Consensus        27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~-------------------------~~~~~~~~~------------   67 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDIL-------------------------QLLQMEQPG------------   67 (318)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEE-------------------------EEEECCSTT------------
T ss_pred             cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEE-------------------------EEEEecCCC------------
Confidence            45789999986 77766 5899999999987633                         112334566            


Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      ..|.+++|  +|++++|++|+.||+|++||+++++....  +..|.           ..+.  .+++.+..+++++.  +
T Consensus        68 ~~V~~v~~--~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~--~~~h~-----------~~~~--~~~~~~~~l~s~~~--~  128 (318)
T 4ggc_A           68 EYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRN--MTSHS-----------ARVG--SLSWNSYILSSGSR--S  128 (318)
T ss_dssp             CCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE--EECCS-----------SCEE--EEEEETTEEEEEET--T
T ss_pred             CeEEEEEE--CCCCCEEEEEECCCcEEEeecCCceeEEE--ecCcc-----------ceEE--EeecCCCEEEEEec--C
Confidence            88999999  89999999999999999999998874332  33333           3333  34556677888877  8


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (432)
                      +.+++|+...  ....+..+ .+|...+..+.+++++++++++ .|+.|++||++ +++.....   ......+...|.+
T Consensus       129 ~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~---~~~~~~~~~~v~~  201 (318)
T 4ggc_A          129 GHIHHHDVRV--AEHHVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA-PGEGGWVP---LQTFTQHQGAVKA  201 (318)
T ss_dssp             SEEEEEETTS--SSCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS-CBTTBSCC---SEEECCCCSCEEE
T ss_pred             CceEeeecCC--CceeEEEE-cCccCceEEEEEcCCCCEEEEEecCcceeEEECC-CCcccccc---eeeecccCCceEE
Confidence            9999999874  23444555 7899999999999999999999 99999999998 33321110   0122567788999


Q ss_pred             EEEcCCCCcEE--EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe---eC
Q 014005          273 AEFHPIYCNLL--AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR---DY  347 (432)
Q Consensus       273 ~~~~p~~~~~l--~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~---~~  347 (432)
                      +.++|++...+  ++++.++.|++||.+....    ......              ...+..+.|+|++..++++   .+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~----~~~~~~--------------~~~v~~~~~~~~~~~~~~~sg~~d  263 (318)
T 4ggc_A          202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC----LSAVDA--------------HSQVCSILWSPHYKELISGHGFAQ  263 (318)
T ss_dssp             EEECTTSTTEEEEEECTTTCEEEEEETTTCCE----EEEEEC--------------SSCEEEEEEETTTTEEEEEECTTT
T ss_pred             EEecCCCCcEEEEEecCCCCEEEEEecccccc----cccccc--------------eeeeeeeeecccccceEEEEEcCC
Confidence            99999885554  3556889999999987664    233333              5789999999999988764   34


Q ss_pred             CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          348 MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       348 ~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      +.|++||+   +++.++..|..           .+..+.......++++|+.||.|++|+.
T Consensus       264 ~~i~iwd~~~~~~~~~l~gH~~-----------~V~~l~~spdg~~l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          264 NQLVIWKYPTMAKVAELKGHTS-----------RVLSLTMSPDGATVASAAADETLRLWRC  313 (318)
T ss_dssp             CCEEEEETTTCCEEEEECCCSS-----------CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             CEEEEEECCCCcEEEEEcCCCC-----------CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence            99999999   77788887764           2222222222235899999999999994

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.98  E-value=2.3e-31  Score=282.80  Aligned_cols=284  Identities=17%  Similarity=0.200  Sum_probs=226.2

Q ss_pred             CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      +...|.+++|+|+|+++++|+.||.|++|++.+++.                           ...+.+|.         
T Consensus       960 ~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~---------------------------~~~~~~h~--------- 1003 (1249)
T 3sfz_A          960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV---------------------------FSSGVGHK--------- 1003 (1249)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC---------------------------EEECCCCS---------
T ss_pred             ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce---------------------------eeecccCC---------
Confidence            456799999999999999999999999999988653                           35677898         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                         ..|.+++|  +|+++++++++.||.|++||+.+++.....   .+.           ..+.++.+++++.+ ++++.
T Consensus      1004 ---~~v~~l~~--s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~-----------~~v~~~~~~~~~~l-~~~~~ 1063 (1249)
T 3sfz_A         1004 ---KAVRHIQF--TADGKTLISSSEDSVIQVWNWQTGDYVFLQ---AHQ-----------ETVKDFRLLQDSRL-LSWSF 1063 (1249)
T ss_dssp             ---SCCCCEEE--CSSSSCEEEECSSSBEEEEETTTTEEECCB---CCS-----------SCEEEEEECSSSEE-EEEES
T ss_pred             ---CceEEEEE--CCCCCEEEEEcCCCEEEEEECCCCceEEEe---cCC-----------CcEEEEEEcCCCcE-EEEEC
Confidence               99999999  899999999999999999999988754332   333           67889999997654 55555


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                        ++.+++||+.   ++++...+ .+|...|.+++|+|+++.++++ .|++|++||+. .+.....+       .+|...
T Consensus      1064 --dg~v~vwd~~---~~~~~~~~-~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~-~~~~~~~l-------~~h~~~ 1129 (1249)
T 3sfz_A         1064 --DGTVKVWNVI---TGRIERDF-TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD-LLSPLHEL-------KGHNGC 1129 (1249)
T ss_dssp             --SSEEEEEETT---TTCCCEEE-ECCSSCCCCEEECSSSSSCEEECCSSCCCEECSS-SSSCSBCC-------CCCSSC
T ss_pred             --CCcEEEEECC---CCceeEEE-cccCCcEEEEEECCCCCEEEEEcCCCcEEEEECC-Ccceeeee-------ccCCCc
Confidence              8999999998   67777888 7899999999999999999999 99999999998 55555544       789999


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCe
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN  349 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~  349 (432)
                      |++++|+|++ ++|++|+.||.|++||+.+++.    ...+...    ........|...|++++|+|||++|++++ |.
T Consensus      1130 v~~~~~s~dg-~~lat~~~dg~i~vwd~~~~~~----~~~~~~~----~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~ 1199 (1249)
T 3sfz_A         1130 VRCSAFSLDG-ILLATGDDNGEIRIWNVSDGQL----LHSCAPI----SVEEGTATHGGWVTDVCFSPDSKTLVSAG-GY 1199 (1249)
T ss_dssp             EEEEEECSSS-SEEEEEETTSCCCEEESSSSCC----CCCCCCC----C-------CCSCCCEEEECTTSSCEEEES-SS
T ss_pred             EEEEEECCCC-CEEEEEeCCCEEEEEECCCCce----EEEeccc----cccccccccCceEEEEEECCCCCEEEECC-Ce
Confidence            9999999999 9999999999999999998875    2332100    00000112378899999999999999987 89


Q ss_pred             EEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          350 LKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       350 i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      |++||+   +.+..+..+..           .+..+.......++++++.+|.+.+|+-
T Consensus      1200 v~vwd~~~g~~~~~~~~~~~-----------~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A         1200 LKWWNVATGDSSQTFYTNGT-----------NLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp             EEEBCSSSCBCCCCCCCSSC-----------CCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred             EEEEECCCCceeeeeeccCC-----------cccEEEECCCCCEEEEecCCcEEEEEee
Confidence            999999   45555554432           2222222223335888999999999983

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.98  E-value=6.9e-30  Score=241.88  Aligned_cols=280  Identities=35%  Similarity=0.570  Sum_probs=203.1

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcce---------eeeeecCCCC-ccccccccccccccccccCCCCC-
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV---------KKIKEMDHFP-FVSSENTLLAEKNFMNEHNPPSF-  182 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~-  182 (432)
                      +.|.+++|  +|++++|++|+.||.|++||+.++..         .....+..|. ++..+.....++.|.+++|+|++ 
T Consensus        29 ~~V~~v~~--s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           29 DIISTVEF--NHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GSEEEEEE--CSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             CcEEEEEE--CCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            89999999  89999999999999999999987651         1122222221 00000111112679999999998 


Q ss_pred             -cceecceeeccceEEEEeeccccc------------------------------------ceeeEEeecCCCCCeeEEE
Q 014005          183 -AHGYHLEWTENMATKIANVGNSVH------------------------------------ARCQKVYPHAHDFNINSIS  225 (432)
Q Consensus       183 -~~~~~~~~~~~~~v~i~d~~~~~~------------------------------------~~~~~~~~~~~~~~i~~~~  225 (432)
                       ..+++++.  |+.|++||+.....                                    ..+.+.+..+|...|.+++
T Consensus       107 ~~~l~s~s~--d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          107 AAQFLLSTN--DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             SSEEEEEEC--SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             cceEEEeCC--CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence             78888887  99999999874211                                    0112233368999999999


Q ss_pred             eCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccc
Q 014005          226 NNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH  305 (432)
Q Consensus       226 ~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~  305 (432)
                      |+|++++|++|.|+.|++||++..+..+..++.++..+.+|...|++++|+|+++++|++|+.||.|++||+++++.+..
T Consensus       185 ~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          185 INSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             ECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             EcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            99999999999999999999995566777776777777899999999999999768999999999999999998875444


Q ss_pred             cceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec----CcceeEeecceeeeehhhhhcccccc
Q 014005          306 SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY----EPVMTLSFCGIYVWILRQLQHSRFMS  381 (432)
Q Consensus       306 ~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (432)
                      ....+..| ..+.....+.+|...|.+++|+|+|++|++++++.|++||+    +++..+..|..        ....++.
T Consensus       265 ~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~--------~~~~l~~  335 (447)
T 3dw8_B          265 HSKLFEEP-EDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEY--------LRSKLCS  335 (447)
T ss_dssp             TCEEECCC------CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGG--------GTTTHHH
T ss_pred             eeeEeccC-CCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeecccc--------ccccccc
Confidence            45777775 22222233333445999999999999999986699999999    46677777653        1111111


Q ss_pred             c------------ccceeeEEEEeecccceeeeeccC
Q 014005          382 I------------YALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       382 ~------------~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                      .            .......++++|+.||.|.+|+..
T Consensus       336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred             cccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence            1            111122258999999999999943

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=3.8e-31  Score=238.74  Aligned_cols=251  Identities=11%  Similarity=0.041  Sum_probs=185.7

Q ss_pred             eeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccccc
Q 014005           96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN  175 (432)
Q Consensus        96 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  175 (432)
                      .+.+|.            +.|++++|  +|++++|++|+.|++|++||+.++....+..+..|.           +.|.+
T Consensus         8 ~~~~H~------------~~V~~v~~--s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~-----------~~V~~   62 (316)
T 3bg1_A            8 VDTSHE------------DMIHDAQM--DYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHE-----------GPVWQ   62 (316)
T ss_dssp             ------------------CCEEEEEE--CGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCS-----------SCEEE
T ss_pred             eccccc------------CeEEEeeE--cCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCC-----------ccEEE
Confidence            456888            99999999  899999999999999999999877544445555666           88999


Q ss_pred             ccCCCC--CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCCCCC
Q 014005          176 EHNPPS--FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISD  250 (432)
Q Consensus       176 ~~~~~~--~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~-~d~~i~lwd~~~~~  250 (432)
                      ++|+++  +..+++++.  |+.|++||++.. ...+...+ .+|...|++++|+|+  +.+|++| .|++|++||++. .
T Consensus        63 v~~~~~~~~~~l~s~s~--D~~v~iWd~~~~-~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~-~  137 (316)
T 3bg1_A           63 VAWAHPMYGNILASCSY--DRKVIIWREENG-TWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG-E  137 (316)
T ss_dssp             EEECCGGGSSCEEEEET--TSCEEEECCSSS-CCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS-S
T ss_pred             EEeCCCCCCCEEEEEEC--CCEEEEEECCCC-cceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC-C
Confidence            999863  789999988  999999999832 12345556 789999999999998  7899999 999999999983 3


Q ss_pred             ceeeEeecCCCCcCCCCcceEEEEEcCCC----------------CcEEEEEeCCCeEEEEEccccccccccceeecccc
Q 014005          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIY----------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA  314 (432)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~  314 (432)
                      ......    ..+.+|...|.+++|+|+.                .++|++|+.|+.|++||++.+.. ......+.+| 
T Consensus       138 ~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-~~~~~~l~~h-  211 (316)
T 3bg1_A          138 GQWEVK----KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ-WKEEQKLEAH-  211 (316)
T ss_dssp             SCEEEC----CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC-EEEEECCBCC-
T ss_pred             CCccee----eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc-cceeeecccC-
Confidence            221111    1237888999999999972                16899999999999999975421 0114667776 


Q ss_pred             cccCCccceeeeecceeEEEEcCCC----CEEEEee-CCeEEEEecCc-------ceeEeecceeeeehhhhhccccccc
Q 014005          315 ESHGSKSFFTEIIASISDIKFANDG----QHLLSRD-YMNLKVFRYEP-------VMTLSFCGIYVWILRQLQHSRFMSI  382 (432)
Q Consensus       315 ~~~~~~~~~~~~~~~v~~~~~s~dg----~~l~s~~-~~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  382 (432)
                                  ...|.+++|+|++    .+|++|+ |++|++||+..       ...+..|..           .+..+
T Consensus       212 ------------~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-----------~v~~v  268 (316)
T 3bg1_A          212 ------------SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND-----------VVWHV  268 (316)
T ss_dssp             ------------SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSS-----------CEEEE
T ss_pred             ------------CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCC-----------cEEEE
Confidence                        7899999999986    7899975 59999999822       122322221           12222


Q ss_pred             ccceeeEEEEeecccceeeeecc
Q 014005          383 YALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       383 ~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      ..+.....+++|+.|+.|++|+.
T Consensus       269 ~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          269 SWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             EECTTTCCEEEEESSSCEEEEEE
T ss_pred             EEcCCCCEEEEEcCCCeEEEEEE
Confidence            12222235889999999999994

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=1.7e-29  Score=257.28  Aligned_cols=261  Identities=16%  Similarity=0.246  Sum_probs=215.2

Q ss_pred             ccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccc
Q 014005            8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTS   87 (432)
Q Consensus         8 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (432)
                      +.....|++..-   ........|.+.|++++|+|+|++|++|+.||.|++||+.+++.                     
T Consensus        34 ~g~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~---------------------   89 (814)
T 3mkq_A           34 SGRVEIWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK---------------------   89 (814)
T ss_dssp             TSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE---------------------
T ss_pred             CCEEEEEECCCC---ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE---------------------
Confidence            344556765431   11122235889999999999999999999999999999988763                     


Q ss_pred             cCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccc
Q 014005           88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL  167 (432)
Q Consensus        88 ~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  167 (432)
                            ...+.+|.            ..|.+++|  +|++++|++++.||.|++||+.++.. ....+..+.        
T Consensus        90 ------~~~~~~~~------------~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~--------  140 (814)
T 3mkq_A           90 ------VVDFEAHP------------DYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWA-LEQTFEGHE--------  140 (814)
T ss_dssp             ------EEEEECCS------------SCEEEEEE--CSSSSEEEEEETTSEEEEEEGGGTSE-EEEEEECCS--------
T ss_pred             ------EEEEecCC------------CCEEEEEE--eCCCCEEEEEcCCCEEEEEECCCCce-EEEEEcCCC--------
Confidence                  36788898            99999999  89999999999999999999987631 222233333        


Q ss_pred             ccccccccccCCC-CCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC--CCCEEEEE-cCCeEEE
Q 014005          168 LAEKNFMNEHNPP-SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINL  243 (432)
Q Consensus       168 ~~~~~i~~~~~~~-~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~-~d~~i~l  243 (432)
                         ..+.+++|+| ++..+++++.  ++.|++||+.   .......+...+...+.+++|+|  ++++++++ .|+.|++
T Consensus       141 ---~~v~~~~~~p~~~~~l~~~~~--dg~v~vwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~  212 (814)
T 3mkq_A          141 ---HFVMCVAFNPKDPSTFASGCL--DRTVKVWSLG---QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI  212 (814)
T ss_dssp             ---SCEEEEEEETTEEEEEEEEET--TSEEEEEETT---CSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEE
T ss_pred             ---CcEEEEEEEcCCCCEEEEEeC--CCeEEEEECC---CCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEE
Confidence               6799999999 8889999988  9999999997   44555555345568999999999  99999999 9999999


Q ss_pred             EeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005          244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (432)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~  323 (432)
                      ||++ .+.....+       .+|...|++++|+|++ ++|++++.||.|++||+.+++.    ...+..|          
T Consensus       213 ~d~~-~~~~~~~~-------~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~----~~~~~~~----------  269 (814)
T 3mkq_A          213 WDYQ-TKSCVATL-------EGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKV----EKTLNVG----------  269 (814)
T ss_dssp             EETT-TTEEEEEE-------ECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSE----EEEECCS----------
T ss_pred             EECC-CCcEEEEE-------cCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE----EEEeecC----------
Confidence            9999 66666665       7888999999999999 8999999999999999998776    5777775          


Q ss_pred             eeeecceeEEEEcCCCC--EEEEeeCCeEEEEec
Q 014005          324 TEIIASISDIKFANDGQ--HLLSRDYMNLKVFRY  355 (432)
Q Consensus       324 ~~~~~~v~~~~~s~dg~--~l~s~~~~~i~iwd~  355 (432)
                         ...+.+++|+|+|+  +++++.++.+.+|++
T Consensus       270 ---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (814)
T 3mkq_A          270 ---LERSWCIATHPTGRKNYIASGFDNGFTVLSL  300 (814)
T ss_dssp             ---SSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred             ---CCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence               67999999999987  577888889999998

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8e-30  Score=229.45  Aligned_cols=257  Identities=12%  Similarity=0.177  Sum_probs=205.5

Q ss_pred             hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005            6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS   85 (432)
Q Consensus         6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (432)
                      ..+.....|++...   ........|.+.|++++|+|++++|++|+.||.|++|++.....                   
T Consensus        36 ~~dg~v~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-------------------   93 (313)
T 3odt_A           36 SRDGTVRLWSKDDQ---WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG-------------------   93 (313)
T ss_dssp             ETTSEEEEEEESSS---EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT-------------------
T ss_pred             EcCCcEEEEECCCC---EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC-------------------
Confidence            44455667766421   11223346788999999999999999999999999999877541                   


Q ss_pred             cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005           86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN  165 (432)
Q Consensus        86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  165 (432)
                           .+....+.+|.            ..|.+++|    +++++++++.|+.|++||  .++  ....+..+.      
T Consensus        94 -----~~~~~~~~~~~------------~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~--~~~~~~~~~------  142 (313)
T 3odt_A           94 -----EDPLYTLIGHQ------------GNVCSLSF----QDGVVISGSWDKTAKVWK--EGS--LVYNLQAHN------  142 (313)
T ss_dssp             -----SCC-CEECCCS------------SCEEEEEE----ETTEEEEEETTSEEEEEE--TTE--EEEEEECCS------
T ss_pred             -----CCcccchhhcc------------cCEEEEEe----cCCEEEEEeCCCCEEEEc--CCc--EEEecccCC------
Confidence                 23446778898            99999999    367999999999999999  333  222223333      


Q ss_pred             ccccccccccccCCC-CCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEE
Q 014005          166 TLLAEKNFMNEHNPP-SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL  243 (432)
Q Consensus       166 ~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~l  243 (432)
                           ..+.++.+.+ ++..+++++.  ++.+++||..     +....+...|...+.+++|+|++. ++++ .|+.|++
T Consensus       143 -----~~v~~~~~~~~~~~~l~~~~~--d~~i~i~d~~-----~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i  209 (313)
T 3odt_A          143 -----ASVWDAKVVSFSENKFLTASA--DKTIKLWQND-----KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKL  209 (313)
T ss_dssp             -----SCEEEEEEEETTTTEEEEEET--TSCEEEEETT-----EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEE
T ss_pred             -----CceeEEEEccCCCCEEEEEEC--CCCEEEEecC-----ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEE
Confidence                 6788888887 8889998888  9999999943     455666344899999999999998 7777 9999999


Q ss_pred             EeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005          244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (432)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~  323 (432)
                      ||++ .++.+..+       ..|...|++++|+|++ . |++++.||.|++||+++++.    ...+..|          
T Consensus       210 ~d~~-~~~~~~~~-------~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~~~----~~~~~~~----------  265 (313)
T 3odt_A          210 VDMH-TGDVLRTY-------EGHESFVYCIKLLPNG-D-IVSCGEDRTVRIWSKENGSL----KQVITLP----------  265 (313)
T ss_dssp             EETT-TCCEEEEE-------ECCSSCEEEEEECTTS-C-EEEEETTSEEEEECTTTCCE----EEEEECS----------
T ss_pred             EECC-chhhhhhh-------hcCCceEEEEEEecCC-C-EEEEecCCEEEEEECCCCce----eEEEecc----------
Confidence            9999 66677665       7899999999999998 5 88899999999999998876    5777776          


Q ss_pred             eeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          324 TEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       324 ~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                         ...|.+++|+|+|++++++.|+.|++||+
T Consensus       266 ---~~~i~~~~~~~~~~~~~~~~dg~i~iw~~  294 (313)
T 3odt_A          266 ---AISIWSVDCMSNGDIIVGSSDNLVRIFSQ  294 (313)
T ss_dssp             ---SSCEEEEEECTTSCEEEEETTSCEEEEES
T ss_pred             ---CceEEEEEEccCCCEEEEeCCCcEEEEeC
Confidence               67999999999999776667799999999

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1e-29  Score=233.13  Aligned_cols=230  Identities=13%  Similarity=0.152  Sum_probs=171.7

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      -.|.+.|+|++|+|+|++||+|+.++ ++||+.+..+.                             ....+.       
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-----------------------------~~~~~~-------   58 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-----------------------------IMSQEM-------   58 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-----------------------------EEEEEC-------
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-----------------------------eeeeec-------
Confidence            45889999999999999999998775 78999876542                             122222       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEE-EEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          109 SLEIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                           ..+..+++  .++++.+ ++++.|++|++||+.+++......+   .           ..+.++.++++...+. 
T Consensus        59 -----~~~~~~~~--~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~---~-----------~~v~~v~~~~~~~~~~-  116 (355)
T 3vu4_A           59 -----RHLSKVRM--LHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV---D-----------APVKDLFLSREFIVVS-  116 (355)
T ss_dssp             -----SCCCEEEE--CTTSSEEEEECSSTTEEEEEETTTTEEEEEEEC---S-----------SCEEEEEECSSEEEEE-
T ss_pred             -----CCeEEEEE--cCCCCEEEEEECCccEEEEEECCCCcEEEEEEC---C-----------CceEEEEEcCCEEEEE-
Confidence                 34677888  6677776 5678889999999998875443332   2           5788888887754332 


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE--E-cCCeEEEEeCCCCCc-------------
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQ-------------  251 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~-~d~~i~lwd~~~~~~-------------  251 (432)
                        .  ++.+++||+...  .+.+..+ ..   ....+++++  ..+++  | .||.|++||++. +.             
T Consensus       117 --~--~~~i~i~d~~~~--~~~~~~~-~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~-~~~~~~~~~~~~~~~  183 (355)
T 3vu4_A          117 --Y--GDVISVFKFGNP--WKRITDD-IR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQS-SGSATTQDQGVQQKA  183 (355)
T ss_dssp             --E--TTEEEEEESSTT--CCBSSCC-EE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC----------------
T ss_pred             --E--cCEEEEEECCCC--ceeeEEe-cc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCC-CCccccccccccccc
Confidence              2  789999999832  0333333 12   333455666  55554  6 899999999983 32             


Q ss_pred             ---eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCe-EEEEEccccccccccceeec-c-cccccCCccceee
Q 014005          252 ---CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILR-D-AAESHGSKSFFTE  325 (432)
Q Consensus       252 ---~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~-~-h~~~~~~~~~~~~  325 (432)
                         +...       +.+|...|++++|+|++ ++||+|+.||+ |++||+++++.    +..+. + |            
T Consensus       184 ~~p~~~~-------~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~----~~~~~~g~h------------  239 (355)
T 3vu4_A          184 ILGKGVL-------IKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVL----VREFRRGLD------------  239 (355)
T ss_dssp             ---CCEE-------ECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCE----EEEEECTTC------------
T ss_pred             cCcccEE-------EEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcE----EEEEEcCCC------------
Confidence               1333       38999999999999999 99999999998 99999998876    57776 4 6            


Q ss_pred             eecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          326 IIASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       326 ~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                       ...|.+++|+|||++|+++++ ++|++||+
T Consensus       240 -~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~  269 (355)
T 3vu4_A          240 -RADVVDMKWSTDGSKLAVVSDKWTLHVFEI  269 (355)
T ss_dssp             -CSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred             -CCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence             789999999999999999855 99999999

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=1.2e-29  Score=240.26  Aligned_cols=271  Identities=15%  Similarity=0.212  Sum_probs=214.6

Q ss_pred             cccCCCc-EEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           28 ELQDVDI-VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        28 ~~~h~~~-V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      ...|.+. +.|+.+  +|++|++|+.||+|++||+.+++                           ....+.+|.     
T Consensus       114 l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~---------------------------~~~~~~~h~-----  159 (445)
T 2ovr_B          114 LKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGK---------------------------CLRTLVGHT-----  159 (445)
T ss_dssp             EECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC---------------------------EEEECCCCS-----
T ss_pred             ecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCc---------------------------EEEEEcCCC-----
Confidence            3468776 466555  68999999999999999998865                           346788999     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                             ..|.+++|  +  ++++++|+.||.|++||+.+++..  ..+..+.           ..|.++.++  +..++
T Consensus       160 -------~~v~~~~~--~--~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~h~-----------~~v~~~~~~--~~~l~  213 (445)
T 2ovr_B          160 -------GGVWSSQM--R--DNIIISGSTDRTLKVWNAETGECI--HTLYGHT-----------STVRCMHLH--EKRVV  213 (445)
T ss_dssp             -------SCEEEEEE--E--TTEEEEEETTSCEEEEETTTTEEE--EEECCCS-----------SCEEEEEEE--TTEEE
T ss_pred             -------CCEEEEEe--c--CCEEEEEeCCCeEEEEECCcCcEE--EEECCCC-----------CcEEEEEec--CCEEE
Confidence                   99999999  4  569999999999999999988643  3344444           678888874  56688


Q ss_pred             cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      +++.  |+.+++||+.   .++++..+ .+|...|.++++  +++.+++| .|+.|++||++ .+..+..+       .+
T Consensus       214 s~s~--dg~i~~wd~~---~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~~-------~~  277 (445)
T 2ovr_B          214 SGSR--DATLRVWDIE---TGQCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE-TETCLHTL-------QG  277 (445)
T ss_dssp             EEET--TSEEEEEESS---SCCEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG-GTEEEEEE-------CC
T ss_pred             EEeC--CCEEEEEECC---CCcEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC-CCcEeEEe-------cC
Confidence            8887  9999999998   67788888 789999999999  67889998 99999999999 66777765       78


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                      |...|.+++|  ++ ..+++++.||.|++||+++++.    +..+.+|             ...+.++.++  +.+|++|
T Consensus       278 ~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~-------------~~~v~~~~~~--~~~l~~~  335 (445)
T 2ovr_B          278 HTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNC----IHTLTGH-------------QSLTSGMELK--DNILVSG  335 (445)
T ss_dssp             CSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCE----EEEECCC-------------CSCEEEEEEE--TTEEEEE
T ss_pred             CCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCE----EEEEcCC-------------cccEEEEEEe--CCEEEEE
Confidence            9999999999  66 8999999999999999998876    5777776             6778877774  6688887


Q ss_pred             e-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005          346 D-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       346 ~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                      + ||.|++||+   +++..+..+..        ....+..+..+  ..++++|+.||.|.+|+..
T Consensus       336 ~~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          336 NADSTVKIWDIKTGQCLQTLQGPNK--------HQSAVTCLQFN--KNFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             ETTSCEEEEETTTCCEEEEECSTTS--------CSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred             eCCCeEEEEECCCCcEEEEEccCCC--------CCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence            5 599999999   55566654321        11122222221  2368999999999999943

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=5.1e-31  Score=244.00  Aligned_cols=282  Identities=9%  Similarity=0.054  Sum_probs=195.6

Q ss_pred             hccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccccc
Q 014005            7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTST   86 (432)
Q Consensus         7 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (432)
                      .+.....|++...- .........|.+.|++++|+|+|++|++|+.|++|++||+.+++.                    
T Consensus        31 ~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~--------------------   89 (377)
T 3dwl_C           31 ATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT--------------------   89 (377)
T ss_dssp             SSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C--------------------
T ss_pred             CCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc--------------------
Confidence            44556667665310 012233346899999999999999999999999999999988651                    


Q ss_pred             ccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcce-eeeeecCC-CCccccc
Q 014005           87 SHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDH-FPFVSSE  164 (432)
Q Consensus        87 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~-~~~~~~~  164 (432)
                          ......+.+|.            ..|.+++|  +|++++|++++.|+.|++||+..++. .....+.. +.     
T Consensus        90 ----~~~~~~~~~~~------------~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~-----  146 (377)
T 3dwl_C           90 ----WKQTLVLLRLN------------RAATFVRW--SPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLR-----  146 (377)
T ss_dssp             ----CCCEEECCCCS------------SCEEEEEC--CTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCC-----
T ss_pred             ----eeeeeEecccC------------CceEEEEE--CCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccC-----
Confidence                12335677888            99999999  89999999999999999999987752 11222222 33     


Q ss_pred             cccccccccccccCCCCCcceecceeeccceEEEEeecccc---------------cceeeEEeecCCCCCeeEEEeCCC
Q 014005          165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV---------------HARCQKVYPHAHDFNINSISNNSD  229 (432)
Q Consensus       165 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~---------------~~~~~~~~~~~~~~~i~~~~~~~~  229 (432)
                            ..|.+++|+|++.++++++.  |+.+++||++...               ..+++..+  +|...|.+++|+|+
T Consensus       147 ------~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~  216 (377)
T 3dwl_C          147 ------STILSLDWHPNNVLLAAGCA--DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPS  216 (377)
T ss_dssp             ------SCEEEEEECTTSSEEEEEES--SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTT
T ss_pred             ------CCeEEEEEcCCCCEEEEEeC--CCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCC
Confidence                  78999999999999999998  9999999985221               24455554  88999999999999


Q ss_pred             CCEEEEE-cCCeEEEEeCCCCCce----eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccc
Q 014005          230 CETFVSA-DDLRINLWNLEISDQC----FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD  304 (432)
Q Consensus       230 ~~~l~~~-~d~~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~  304 (432)
                      +++|+++ .|+.|++||++ .+..    +..       +.+|...|.+++|+|++ ++|++|+.++.+ +|+...+... 
T Consensus       217 ~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~-  285 (377)
T 3dwl_C          217 GNALAYAGHDSSVTIAYPS-APEQPPRALIT-------VKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWA-  285 (377)
T ss_dssp             SSCEEEEETTTEEC-CEEC-STTSCEEECCC-------EECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---C-
T ss_pred             CCEEEEEeCCCcEEEEECC-CCCCcceeeEe-------ecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceE-
Confidence            9999999 99999999999 4443    333       37899999999999999 999988766655 6766532210 


Q ss_pred             ccceeeccccccc--------------------------------------CCccceeeeecceeEEEEcCCC-C---EE
Q 014005          305 HSARILRDAAESH--------------------------------------GSKSFFTEIIASISDIKFANDG-Q---HL  342 (432)
Q Consensus       305 ~~~~~~~~h~~~~--------------------------------------~~~~~~~~~~~~v~~~~~s~dg-~---~l  342 (432)
                       ....+.. +...                                      ........|.+.|+++++.+++ .   .|
T Consensus       286 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~  363 (377)
T 3dwl_C          286 -HTRDLDA-GTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAF  363 (377)
T ss_dssp             -CSBCCCS-CCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEE
T ss_pred             -EEeeecc-cccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEE
Confidence             0111111 0000                                      0001112378899999976653 3   57


Q ss_pred             EEe-eCCeEEEEec
Q 014005          343 LSR-DYMNLKVFRY  355 (432)
Q Consensus       343 ~s~-~~~~i~iwd~  355 (432)
                      +|| .||.|++||+
T Consensus       364 ~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          364 TSSGTDGRVVLWTL  377 (377)
T ss_dssp             EEEETTSEEEEECC
T ss_pred             EeecCCCcEEEecC
Confidence            776 5699999996

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=3.8e-29  Score=236.80  Aligned_cols=296  Identities=11%  Similarity=0.184  Sum_probs=226.4

Q ss_pred             hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005            6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS   85 (432)
Q Consensus         6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (432)
                      ..+.....|++..-   +.......|.+.|++++|+  +++|++|+.||+|++||+++++                    
T Consensus       136 ~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~--------------------  190 (445)
T 2ovr_B          136 SDDNTLKVWSAVTG---KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE--------------------  190 (445)
T ss_dssp             ETTSCEEEEETTTC---CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE--------------------
T ss_pred             ECCCcEEEEECCCC---cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc--------------------
Confidence            34455566765421   1122234689999999998  6799999999999999998865                    


Q ss_pred             cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005           86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN  165 (432)
Q Consensus        86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  165 (432)
                             ....+.+|.            ..|.++.|  +  ++.+++|+.||.|++||+.+++....  +..+.      
T Consensus       191 -------~~~~~~~h~------------~~v~~~~~--~--~~~l~s~s~dg~i~~wd~~~~~~~~~--~~~~~------  239 (445)
T 2ovr_B          191 -------CIHTLYGHT------------STVRCMHL--H--EKRVVSGSRDATLRVWDIETGQCLHV--LMGHV------  239 (445)
T ss_dssp             -------EEEEECCCS------------SCEEEEEE--E--TTEEEEEETTSEEEEEESSSCCEEEE--EECCS------
T ss_pred             -------EEEEECCCC------------CcEEEEEe--c--CCEEEEEeCCCEEEEEECCCCcEEEE--EcCCc------
Confidence                   346788898            99999999  3  56899999999999999998774332  33333      


Q ss_pred             ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEE
Q 014005          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW  244 (432)
Q Consensus       166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lw  244 (432)
                           ..+.++.+  ++..+++++.  ++.+++||++   ..+++..+ .+|...|.+++|  ++..++++ .|+.|++|
T Consensus       240 -----~~v~~~~~--~~~~l~~~~~--dg~i~iwd~~---~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~  304 (445)
T 2ovr_B          240 -----AAVRCVQY--DGRRVVSGAY--DFMVKVWDPE---TETCLHTL-QGHTNRVYSLQF--DGIHVVSGSLDTSIRVW  304 (445)
T ss_dssp             -----SCEEEEEE--CSSCEEEEET--TSCEEEEEGG---GTEEEEEE-CCCSSCEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred             -----ccEEEEEE--CCCEEEEEcC--CCEEEEEECC---CCcEeEEe-cCCCCceEEEEE--CCCEEEEEeCCCeEEEE
Confidence                 67788887  6788888888  9999999998   77888888 789999999999  78899999 99999999


Q ss_pred             eCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcccee
Q 014005          245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (432)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~  324 (432)
                      |++ +++.+..+       .+|...+.++.++  + ++|++|+.||.|++||+++++.    +..+..+          .
T Consensus       305 d~~-~~~~~~~~-------~~~~~~v~~~~~~--~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~----------~  359 (445)
T 2ovr_B          305 DVE-TGNCIHTL-------TGHQSLTSGMELK--D-NILVSGNADSTVKIWDIKTGQC----LQTLQGP----------N  359 (445)
T ss_dssp             ETT-TCCEEEEE-------CCCCSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCCE----EEEECST----------T
T ss_pred             ECC-CCCEEEEE-------cCCcccEEEEEEe--C-CEEEEEeCCCeEEEEECCCCcE----EEEEccC----------C
Confidence            999 66777765       7888889888875  5 7899999999999999998875    5666651          0


Q ss_pred             eeecceeEEEEcCCCCEEEEee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccce-
Q 014005          325 EIIASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLIN-  399 (432)
Q Consensus       325 ~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-  399 (432)
                      .|...|.+++|+  +++|++|+ ||.|++||+   +.+..+.....      ......+..+..+.....+++|+.||. 
T Consensus       360 ~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~la~~~~dg~~  431 (445)
T 2ovr_B          360 KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES------GGSGGVVWRIRASNTKLVCAVGSRNGTE  431 (445)
T ss_dssp             SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT------GGGTCEEEEEEECSSEEEEEEECSSSSS
T ss_pred             CCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeecccc------CCCCceEEEEEecCCEEEEEEcccCCCC
Confidence            126789999996  57899875 599999999   45555522110      011223444444445567899999997 


Q ss_pred             ---eeeecc
Q 014005          400 ---LSALSA  405 (432)
Q Consensus       400 ---i~~~~~  405 (432)
                         +.+|+-
T Consensus       432 ~~~l~v~df  440 (445)
T 2ovr_B          432 ETKLLVLDF  440 (445)
T ss_dssp             CCEEEEEEC
T ss_pred             ccEEEEEEC
Confidence               999984

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=227.90  Aligned_cols=242  Identities=17%  Similarity=0.246  Sum_probs=194.9

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      -.|...|++++|+|+|++||+|+.||+|++|++++++                           ++..+.+|.       
T Consensus        64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~---------------------------~~~~~~~h~-------  109 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---------------------------RLRNMTSHS-------  109 (318)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS-------
T ss_pred             cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce---------------------------eEEEecCcc-------
Confidence            3578899999999999999999999999999998876                           347788998       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           ..+.++.+    ++..+++++.++.+++|+...... .......+.           ..+..+.+.+++.+++++
T Consensus       110 -----~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~l~s~  168 (318)
T 4ggc_A          110 -----ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEH-HVATLSGHS-----------QEVCGLRWAPDGRHLASG  168 (318)
T ss_dssp             -----SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSC-EEEEEECCS-----------SCEEEEEECTTSSEEEEE
T ss_pred             -----ceEEEeec----CCCEEEEEecCCceEeeecCCCce-eEEEEcCcc-----------CceEEEEEcCCCCEEEEE
Confidence                 77777665    567999999999999999876642 222233333           678889999999999999


Q ss_pred             eeeccceEEEEeecccccc-eeeEEeecCCCCCeeEEEeCCCCCEEE---EE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005          189 EWTENMATKIANVGNSVHA-RCQKVYPHAHDFNINSISNNSDCETFV---SA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~---~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (432)
                      +.  |+.+++||++..... ...... ..+.+.|.+++++|++..++   ++ .++.|++||.+ .......        
T Consensus       169 ~~--d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~-~~~~~~~--------  236 (318)
T 4ggc_A          169 GN--DNLVNVWPSAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC-SGACLSA--------  236 (318)
T ss_dssp             ET--TSCEEEEESSCBTTBSCCSEEE-CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT-TCCEEEE--------
T ss_pred             ec--CcceeEEECCCCcccccceeee-cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc-ccccccc--------
Confidence            88  999999999854222 223333 67888999999999766443   45 78999999999 4444433        


Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEe--CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~  341 (432)
                      ..+...+..+.|+|++ ..+++++  .|+.|++||+++++.    +..+.+|             .+.|++++|+|||++
T Consensus       237 ~~~~~~v~~~~~~~~~-~~~~~~sg~~d~~i~iwd~~~~~~----~~~l~gH-------------~~~V~~l~~spdg~~  298 (318)
T 4ggc_A          237 VDAHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAK----VAELKGH-------------TSRVLSLTMSPDGAT  298 (318)
T ss_dssp             EECSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCCE----EEEECCC-------------SSCEEEEEECTTSSC
T ss_pred             ccceeeeeeeeecccc-cceEEEEEcCCCEEEEEECCCCcE----EEEEcCC-------------CCCEEEEEEcCCCCE
Confidence            3566779999999998 6666554  799999999999886    6889997             889999999999999


Q ss_pred             EEEee-CCeEEEEec
Q 014005          342 LLSRD-YMNLKVFRY  355 (432)
Q Consensus       342 l~s~~-~~~i~iwd~  355 (432)
                      |+||+ |++|+|||+
T Consensus       299 l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          299 VASAAADETLRLWRC  313 (318)
T ss_dssp             EEEEETTTEEEEECC
T ss_pred             EEEEecCCeEEEEEC
Confidence            99975 599999998

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-29  Score=240.26  Aligned_cols=213  Identities=10%  Similarity=0.009  Sum_probs=164.8

Q ss_pred             cceeEEEEEEcCCCCEE-EEEeCCCeEEEEEcc--CcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          114 EKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l-~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                      ..|.+++|  +|++++| ++++.||.|++||+.  +++.........+.           ..+.+++|+|++.+++++..
T Consensus       103 ~~v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-----------~~v~~~~~sp~~~~l~~~~~  169 (450)
T 2vdu_B          103 SYIRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS-----------KRPNAISIAEDDTTVIIADK  169 (450)
T ss_dssp             CCEEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECS-----------SCEEEEEECTTSSEEEEEET
T ss_pred             CceEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCC-----------CCceEEEEcCCCCEEEEEeC
Confidence            67999999  8999996 889999999999998  66544333222223           67899999999999999988


Q ss_pred             eccceEEEEeecccccce-eeEEeecCCCCCeeEEEeCCC---CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          191 TENMATKIANVGNSVHAR-CQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~---~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                        ++.+.+|++....... +...+ .+|...|.+++|+|+   +++|++| .|+.|++||++ .+..+..+      ..+
T Consensus       170 --~g~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~------~~~  239 (450)
T 2vdu_B          170 --FGDVYSIDINSIPEEKFTQEPI-LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP-QCFIVDKW------LFG  239 (450)
T ss_dssp             --TSEEEEEETTSCCCSSCCCCCS-EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES-CTTCEEEE------CCC
T ss_pred             --CCcEEEEecCCcccccccceee-ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC-CCceeeee------ecC
Confidence              9999999987442222 33355 678999999999999   9899999 99999999999 55555543      268


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccc-cc-------CC----ccceeeeecceeEE
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE-SH-------GS----KSFFTEIIASISDI  333 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~-~~-------~~----~~~~~~~~~~v~~~  333 (432)
                      |...|++++|+ ++ ++|++++.|+.|++||+++++.    +..+..+.. .+       .+    ..........|.++
T Consensus       240 h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  313 (450)
T 2vdu_B          240 HKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKN----LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI  313 (450)
T ss_dssp             CSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCE----EEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred             CCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcE----eeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence            99999999999 88 9999999999999999998875    455543210 00       00    00000124578999


Q ss_pred             EEcCCCCEEEEee--CCeEEEEec
Q 014005          334 KFANDGQHLLSRD--YMNLKVFRY  355 (432)
Q Consensus       334 ~~s~dg~~l~s~~--~~~i~iwd~  355 (432)
                      +|+|++++|+++.  ++.|++||+
T Consensus       314 ~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          314 IKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEe
Confidence            9999999999875  499999999

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=2.2e-29  Score=248.11  Aligned_cols=263  Identities=15%  Similarity=0.180  Sum_probs=209.0

Q ss_pred             ccccCCCc-EEEEEEcC--CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005           27 EELQDVDI-VSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (432)
Q Consensus        27 ~~~~h~~~-V~~~~fsp--~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~  103 (432)
                      ....|.+. |++++|+|  +|++||+|+.||.|++||+.+++..                   ..+.......+.+|.  
T Consensus        58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~-------------------~~~~~~~~~~~~~~~--  116 (615)
T 1pgu_A           58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES-------------------NSVEVNVKSEFQVLA--  116 (615)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG-------------------TEEEEEEEEEEECCS--
T ss_pred             EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccc-------------------ccccccccchhhccc--
Confidence            34468899 99999999  9999999999999999999754100                   000123446778888  


Q ss_pred             ccccchhhhhcceeEEEEEEcCCCCEEEEEeCC----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCC
Q 014005          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (432)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  179 (432)
                                ..|.+++|  +|+++++++++.+    +.|.+||.  ++  ....+..+.           ..|.+++|+
T Consensus       117 ----------~~v~~~~~--s~~~~~l~~~~~~~~~~~~v~~~d~--~~--~~~~~~~~~-----------~~v~~~~~~  169 (615)
T 1pgu_A          117 ----------GPISDISW--DFEGRRLCVVGEGRDNFGVFISWDS--GN--SLGEVSGHS-----------QRINACHLK  169 (615)
T ss_dssp             ----------SCEEEEEE--CTTSSEEEEEECCSSCSEEEEETTT--CC--EEEECCSCS-----------SCEEEEEEC
T ss_pred             ----------ccEEEEEE--eCCCCEEEEeccCCCCccEEEEEEC--CC--cceeeecCC-----------ccEEEEEEC
Confidence                      99999999  8999999999987    68999983  33  333344455           789999999


Q ss_pred             CCCc-ceecceeeccceEEEEeecccccceeeEEeecCCCC---CeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCcee
Q 014005          180 PSFA-HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSD-CETFVSA-DDLRINLWNLEISDQCF  253 (432)
Q Consensus       180 ~~~~-~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~  253 (432)
                      |++. .+++++.  ++.+++||+.   ..++...+ .+|..   .|.+++|+|+ +++++++ .|+.|++||++ .++.+
T Consensus       170 ~~~~~~l~~~~~--d~~v~vwd~~---~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~  242 (615)
T 1pgu_A          170 QSRPMRSMTVGD--DGSVVFYQGP---PFKFSASD-RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK-SGEFL  242 (615)
T ss_dssp             SSSSCEEEEEET--TTEEEEEETT---TBEEEEEE-CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT-TCCEE
T ss_pred             CCCCcEEEEEeC--CCcEEEEeCC---Ccceeeee-cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC-CCCEe
Confidence            9998 6888887  9999999988   77888888 78888   9999999999 9999999 99999999998 56555


Q ss_pred             eEeecCCCCcC---CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecce
Q 014005          254 NIVDMKPSNMD---DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (432)
Q Consensus       254 ~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v  330 (432)
                      ..+      ..   .|...|.+++|+ ++ ++|++++.||.|++||+++++.    +..+..|..         .+...+
T Consensus       243 ~~~------~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~----~~~~~~~~~---------~~~~~~  301 (615)
T 1pgu_A          243 KYI------EDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKC----VQKWTLDKQ---------QLGNQQ  301 (615)
T ss_dssp             EEC------CBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEE----EEEEECCTT---------CGGGCE
T ss_pred             EEe------cccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcE----EEEEcCCCC---------cccCce
Confidence            543      03   788999999999 88 9999999999999999998775    456655210         013577


Q ss_pred             eEEEEcCCCCEEEEeeC-CeEEEEec---CcceeEeecce
Q 014005          331 SDIKFANDGQHLLSRDY-MNLKVFRY---EPVMTLSFCGI  366 (432)
Q Consensus       331 ~~~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~~~  366 (432)
                      ..+.|+ ++.++++++. +.|++||+   +++..+..|..
T Consensus       302 ~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~  340 (615)
T 1pgu_A          302 VGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNK  340 (615)
T ss_dssp             EEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSS
T ss_pred             eEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCC
Confidence            888886 8889988754 99999999   55566665543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-29  Score=234.80  Aligned_cols=256  Identities=13%  Similarity=0.035  Sum_probs=195.4

Q ss_pred             eeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccc
Q 014005           93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN  172 (432)
Q Consensus        93 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (432)
                      +...+.+|.            ..|.+++|  +|++++|++|+.||.|++||+..+.......+..|.           ..
T Consensus         3 ~~~~~~~h~------------~~v~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~-----------~~   57 (379)
T 3jrp_A            3 MVVIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE-----------GP   57 (379)
T ss_dssp             --CCEEECC------------CCEEEEEE--CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-----------SC
T ss_pred             ccEEecCCc------------ccEEEEEE--cCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCC-----------Cc
Confidence            346788999            99999999  899999999999999999999865555555555566           78


Q ss_pred             cccccCCCC--CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCC
Q 014005          173 FMNEHNPPS--FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLE  247 (432)
Q Consensus       173 i~~~~~~~~--~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~-~d~~i~lwd~~  247 (432)
                      |.+++|+++  +.++++++.  |+.|++||+... .......+ ..|...|.+++|+|+  +++++++ .|+.|++||++
T Consensus        58 v~~~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~  133 (379)
T 3jrp_A           58 VWRVDWAHPKFGTILASCSY--DGKVLIWKEENG-RWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK  133 (379)
T ss_dssp             EEEEEECCGGGCSEEEEEET--TSCEEEEEEETT-EEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             EEEEEeCCCCCCCEEEEecc--CCEEEEEEcCCC-ceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence            999999977  899999998  999999999832 11255666 789999999999999  9999999 99999999998


Q ss_pred             CCCceeeEeecCCCCcCCCCcceEEEEEcC-------------CCCcEEEEEeCCCeEEEEEccccccccccceeecccc
Q 014005          248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA  314 (432)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~  314 (432)
                      . .......     .+..|...|++++|+|             ++ .+|++++.||.|++||++++.........+.+| 
T Consensus       134 ~-~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h-  205 (379)
T 3jrp_A          134 E-NGTTSPI-----IIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-  205 (379)
T ss_dssp             T-TSCCCEE-----EEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-
T ss_pred             C-CCceeeE-----EecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEecc-
Confidence            4 3222211     2368889999999999             57 999999999999999999766432234566666 


Q ss_pred             cccCCccceeeeecceeEEEEcCC---CCEEEEee-CCeEEEEecCc-----ceeEeecceeeeehhhhhcccccccccc
Q 014005          315 ESHGSKSFFTEIIASISDIKFAND---GQHLLSRD-YMNLKVFRYEP-----VMTLSFCGIYVWILRQLQHSRFMSIYAL  385 (432)
Q Consensus       315 ~~~~~~~~~~~~~~~v~~~~~s~d---g~~l~s~~-~~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (432)
                                  ...|.+++|+|+   +++|++++ |+.|++||+..     ...+.....        ....+..+...
T Consensus       206 ------------~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~~~v~~~~~s  265 (379)
T 3jrp_A          206 ------------SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK--------FPDVLWRASWS  265 (379)
T ss_dssp             ------------SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSC--------CSSCEEEEEEC
T ss_pred             ------------cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecccc--------CCCcEEEEEEc
Confidence                        789999999999   89999975 49999999921     111111100        11122222222


Q ss_pred             eeeEEEEeecccceeeeecc
Q 014005          386 SCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       386 ~~~~~~~~g~~~~~i~~~~~  405 (432)
                      ....++++++.||.|.+|+.
T Consensus       266 ~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          266 LSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             SSSCCEEEEESSSSEEEEEE
T ss_pred             CCCCEEEEecCCCcEEEEeC
Confidence            22335888889999999993

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.2e-30  Score=238.02  Aligned_cols=224  Identities=9%  Similarity=0.020  Sum_probs=175.1

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      .+.|.+++|+|||+++|+++.|++|+  |....+                              .+.+|.          
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------------------------------~l~gh~----------   52 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------------------------------DINCNS----------   52 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------------------------------CCSSBG----------
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--cccccc------------------------------eecCCC----------
Confidence            46899999999999999999999999  644432                              446898          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                        ..|.+++|  +|+|       .++.+.+|+.+...   ...... .           ..|.+++|+|++..+++++. 
T Consensus        53 --~~v~~V~F--sPdg-------~~~~~~~~~~~~~~---~~~~~~-~-----------~~V~~vawSPdG~~LAs~s~-  105 (588)
T 2j04_A           53 --KNLFHVKE--FPLE-------FENKLDFELAQQNG---LLNSQP-V-----------CYPRVCKPSPIDDWMAVLSN-  105 (588)
T ss_dssp             --GGTEEEEE--ECCC-------CCCTTTTSCCCSSC---SSTTSC-S-----------CCEEEEEECSSSSCEEEEET-
T ss_pred             --ccEEEEEE--CCCC-------CcceEEEEeCCCce---EeecCC-C-----------CcEEEEEECCCCCEEEEEeC-
Confidence              99999999  7888       56666666544322   212111 2           78999999999999999998 


Q ss_pred             ccceEEEEeecccccceeeEEeecCCCC-----CeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCce-------eeEeec
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAHDF-----NINSISNNSDCETFVSA-DDLRINLWNLEISDQC-------FNIVDM  258 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~-------~~~~~~  258 (432)
                       +|.+++||..   .  ++..+ . |..     .+.+++|+|+|++|++| .||+|++||+. .+..       +..+..
T Consensus       106 -dg~V~iwd~~---~--~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~-~~~l~~~~~i~l~ti~~  176 (588)
T 2j04_A          106 -NGNVSVFKDN---K--MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR-KNSENTPEFYFESSIRL  176 (588)
T ss_dssp             -TSCEEEEETT---E--EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC-CCTTTCCCCEEEEEEEC
T ss_pred             -CCcEEEEeCC---c--eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC-CCccccccceeeeeeec
Confidence             9999999964   2  66665 4 554     59999999999999999 99999999999 4431       333211


Q ss_pred             CCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeec-ccccccCCccceeeeecceeEEEEcC
Q 014005          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR-DAAESHGSKSFFTEIIASISDIKFAN  337 (432)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~~v~~~~~s~  337 (432)
                         ...+|.++|.+++|+|+|   +++++.|+.|++||+.+++.. ...+.+. +|             ...|.+++|+ 
T Consensus       177 ---~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~-~~~~tL~~~h-------------~~~V~svaFs-  235 (588)
T 2j04_A          177 ---SDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQ-PVSRMIQNAS-------------RRKITDLKIV-  235 (588)
T ss_dssp             ---SCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSC-CCEEEEECCC-------------SSCCCCEEEE-
T ss_pred             ---ccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccc-cceeeecccc-------------cCcEEEEEEE-
Confidence               125688999999999986   888999999999999876631 0124453 55             6789999999 


Q ss_pred             CCCEEEEeeCCeEEEEec
Q 014005          338 DGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       338 dg~~l~s~~~~~i~iwd~  355 (432)
                       |++||++++++|++||+
T Consensus       236 -g~~LASa~~~tIkLWd~  252 (588)
T 2j04_A          236 -DYKVVLTCPGYVHKIDL  252 (588)
T ss_dssp             -TTEEEEECSSEEEEEET
T ss_pred             -CCEEEEEeCCeEEEEEC
Confidence             68999987899999999

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.8e-30  Score=241.58  Aligned_cols=246  Identities=16%  Similarity=0.092  Sum_probs=170.4

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      .+....+++++.+||+|+.|++|+|||.+++...                      .......+.+|.            
T Consensus        91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~----------------------~~~~~~~~~gH~------------  136 (393)
T 4gq1_A           91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETII----------------------TQHVLGGKSGHH------------  136 (393)
T ss_dssp             ------CCEEEEEEEEEETTSCEEEEEEETTEEE----------------------EEEEECTTTSCS------------
T ss_pred             CcceeecCCCCCEEEEEeCCCcEEEEECCCCccc----------------------eeeeecccCCCC------------
Confidence            3334444556778999999999999999887532                      122345678999            


Q ss_pred             cceeEEEEEEc------CCCCEEEEEeCCCeEEEEEccCcce-eeeeecCCCCccccccccccccccccccCCCCCc-ce
Q 014005          114 EKINRVRWCAA------PNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HG  185 (432)
Q Consensus       114 ~~v~~l~~~~s------~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~  185 (432)
                      +.|++++|+|.      .|+++|++++.|++|++||+.++.. .....   +.           ..+.+++|+|++. ++
T Consensus       137 ~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~---~~-----------~~v~~v~~~p~~~~~l  202 (393)
T 4gq1_A          137 NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYP---LS-----------SPGISVQFRPSNPNQL  202 (393)
T ss_dssp             SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEE---CS-----------SCEEEEEEETTEEEEE
T ss_pred             CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecC---CC-----------CCcEEEEECCCCCceE
Confidence            99999999541      2788999999999999999987652 22222   22           6788999999875 78


Q ss_pred             ecceeeccceEEEEeecccccceee----------------------EEeecCCCCCeeEEEeC-CCCCEEEEE-cCCeE
Q 014005          186 YHLEWTENMATKIANVGNSVHARCQ----------------------KVYPHAHDFNINSISNN-SDCETFVSA-DDLRI  241 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~~----------------------~~~~~~~~~~i~~~~~~-~~~~~l~~~-~d~~i  241 (432)
                      ++++.  |+.|++||++........                      ... .+|...+.++.|+ ++++.++++ .|+++
T Consensus       203 ~~~~~--d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~v~~v~~~~~dg~~l~s~s~d~~i  279 (393)
T 4gq1_A          203 IVGER--NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS-SGIASSLANVRWIGSDGSGILAMCKSGAW  279 (393)
T ss_dssp             EEEET--TSEEEEEETTCCC----------CSCCCSEEEESGGGC-------CCSSSCSEEEEETTTTCEEEEECTTSEE
T ss_pred             EecCC--CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec-ccccccceeeeeecCCCCEEEEEeCCCCE
Confidence            88888  999999998743111000                      011 3677889999986 799999999 99999


Q ss_pred             EEEeCCCCCceeeEeecCCCCcCCCCcce------------------EEEEEcC-CCCcEEEEEeCCCeEEEEEcccccc
Q 014005          242 NLWNLEISDQCFNIVDMKPSNMDDLTEVI------------------TSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v------------------~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      ++||+. .+.....+       ..|...+                  ....|+| .+..++++|+.||.|++||+.+++.
T Consensus       280 ~vwd~~-~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~  351 (393)
T 4gq1_A          280 LRWNLF-ANNDYNEI-------SDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS  351 (393)
T ss_dssp             EEEEC---------------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC
T ss_pred             EEEECc-cCCCCceE-------eeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE
Confidence            999998 34333322       2222222                  2233444 2325677788999999999998876


Q ss_pred             ccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       303 ~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                          ...+..|             ..+|.+++|+|||++||+++++.+.+|++
T Consensus       352 ----~~~~~~~-------------~~~V~svafspdG~~LA~as~~Gv~lvrL  387 (393)
T 4gq1_A          352 ----NSIPIQL-------------GMPIVDFCWHQDGSHLAIATEGSVLLTRL  387 (393)
T ss_dssp             ----CEEEEEC-------------SSCEEEEEECTTSSEEEEEESSEEEEEEE
T ss_pred             ----EEEecCC-------------CCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence                4555565             67999999999999999998888888876

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=3.9e-29  Score=233.47  Aligned_cols=244  Identities=13%  Similarity=0.116  Sum_probs=193.4

Q ss_pred             EEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           35 VSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        35 V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      ...++++|+...+ ++++.||.|+||+++.....                       ......+.+|.            
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----------------------~~~~~~~~~h~------------   81 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-----------------------DKNVPLVCGHT------------   81 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----------------------CTTCCCBCCCS------------
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-----------------------CCCCceEecCC------------
Confidence            4468888887654 45789999999998654211                       11234677898            


Q ss_pred             cceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcce-----eeeeecCCCCccccccccccccccccccCCCCC-ccee
Q 014005          114 EKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKV-----KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGY  186 (432)
Q Consensus       114 ~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~  186 (432)
                      ..|.+++|  +| ++++|++|+.||.|++||+.++..     .....+..|.           ..|.+++|+|++ ..++
T Consensus        82 ~~V~~~~~--~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~-----------~~v~~~~~~p~~~~~l~  148 (402)
T 2aq5_A           82 APVLDIAW--CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT-----------KRVGIVAWHPTAQNVLL  148 (402)
T ss_dssp             SCEEEEEE--CTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS-----------SCEEEEEECSSBTTEEE
T ss_pred             CCEEEEEe--CCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC-----------CeEEEEEECcCCCCEEE
Confidence            99999999  88 899999999999999999987742     2233334444           789999999998 6888


Q ss_pred             cceeeccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (432)
                      +++.  |+.|++||++   .++++..+. ..|...|.+++|+|++++|+++ .|+.|++||++ .+..+..+      ..
T Consensus       149 s~~~--dg~i~iwd~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~------~~  216 (402)
T 2aq5_A          149 SAGC--DNVILVWDVG---TGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR-KGTVVAEK------DR  216 (402)
T ss_dssp             EEET--TSCEEEEETT---TTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT-TTEEEEEE------EC
T ss_pred             EEcC--CCEEEEEECC---CCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC-CCceeeee------cc
Confidence            8888  9999999998   667777763 5789999999999999999999 99999999999 56555543      14


Q ss_pred             CCCcc-eEEEEEcCCCCcEEEEE---eCCCeEEEEEccccccccccceeec-ccccccCCccceeeeecceeEEEEcCCC
Q 014005          265 DLTEV-ITSAEFHPIYCNLLAYS---SSRGFVRLVDMRQSALCDHSARILR-DAAESHGSKSFFTEIIASISDIKFANDG  339 (432)
Q Consensus       265 ~~~~~-v~~~~~~p~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~~v~~~~~s~dg  339 (432)
                      .|... +.++.|+|++ ++|++|   +.|+.|++||+++++..   ..... .|             ...+..++|+|+|
T Consensus       217 ~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~---~~~~~~~~-------------~~~v~~~~~s~~~  279 (402)
T 2aq5_A          217 PHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEP---LSLQELDT-------------SSGVLLPFFDPDT  279 (402)
T ss_dssp             SSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSC---SEEEECCC-------------CSSCEEEEEETTT
T ss_pred             CCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCC---ceEEeccC-------------CCceeEEEEcCCC
Confidence            56554 8999999998 999999   79999999999986642   22222 22             5789999999999


Q ss_pred             CEEEE-ee-CCeEEEEec
Q 014005          340 QHLLS-RD-YMNLKVFRY  355 (432)
Q Consensus       340 ~~l~s-~~-~~~i~iwd~  355 (432)
                      ++|++ |+ |+.|++||+
T Consensus       280 ~~l~~~g~~dg~i~i~d~  297 (402)
T 2aq5_A          280 NIVYLCGKGDSSIRYFEI  297 (402)
T ss_dssp             TEEEEEETTCSCEEEEEE
T ss_pred             CEEEEEEcCCCeEEEEEe
Confidence            99964 63 699999999

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.4e-29  Score=228.72  Aligned_cols=232  Identities=10%  Similarity=0.023  Sum_probs=174.6

Q ss_pred             EEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeE
Q 014005           39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR  118 (432)
Q Consensus        39 ~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~  118 (432)
                      .+.+++++|++|+.||+|++||+++++..                           ..+.  .            ..|.+
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~---------------------------~~~~--~------------~~v~~   81 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTI---------------------------TTIT--T------------PNPRT   81 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCE---------------------------EEEE--E------------ECCCT
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEE---------------------------EEEe--c------------CCcee
Confidence            34467889999999999999999887643                           2332  3            66778


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEccCcce-------eeeeecCCCCccccccccccccccccccCCC--CCcceecce
Q 014005          119 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-------KKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--SFAHGYHLE  189 (432)
Q Consensus       119 l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~  189 (432)
                      +.|  +|+   +++++.|++|++|+......       ..+..+.          ....+.|.+++++|  ++.++++++
T Consensus        82 ~~~--~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~l~s~s  146 (343)
T 3lrv_A           82 GGE--HPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE----------VDSANEIIYMYGHNEVNTEYFIWAD  146 (343)
T ss_dssp             TCC--CCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE----------CCCSSCEEEEECCC---CCEEEEEE
T ss_pred             eee--CCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee----------cCCCCCEEEEEcCCCCCCCEEEEEe
Confidence            888  666   99999999999998764210       0011111          01126799999999  999999999


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCcee-eEeecCCCCcCC-C
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF-NIVDMKPSNMDD-L  266 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~-~~~~~~~~~~~~-~  266 (432)
                      .  |+.+++||++   .+++.......+...+.+++|+|++.++++| .|+.|++||++ .+... ..+       .. |
T Consensus       147 ~--dg~i~~wd~~---~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~-~~~~~~~~~-------~~~h  213 (343)
T 3lrv_A          147 N--RGTIGFQSYE---DDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS-SPDQASSRF-------PVDE  213 (343)
T ss_dssp             T--TCCEEEEESS---SSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS-CTTSCCEEC-------CCCT
T ss_pred             C--CCcEEEEECC---CCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC-CCCCCccEE-------eccC
Confidence            8  9999999998   5666665534566689999999999999999 99999999999 45444 444       55 8


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecce--eEEEEcCCCCEEEE
Q 014005          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI--SDIKFANDGQHLLS  344 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v--~~~~~s~dg~~l~s  344 (432)
                      ...|++++|+|++ .+|++++ |+.|++||+++++.    ...+..+.          .+...+  .+++|+|+|++|++
T Consensus       214 ~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~----~~~~~~~~----------~~~~~~~~~~~~~~~~g~~l~~  277 (343)
T 3lrv_A          214 EAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVG----TLAYPTYT----------IPEFKTGTVTYDIDDSGKNMIA  277 (343)
T ss_dssp             TSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTT----CBSSCCCB----------C-----CCEEEEECTTSSEEEE
T ss_pred             CCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCc----ceeecccc----------cccccccceEEEECCCCCEEEE
Confidence            9999999999999 9999999 55999999998764    23333210          002333  36999999999999


Q ss_pred             e-e-CCeEEEEec
Q 014005          345 R-D-YMNLKVFRY  355 (432)
Q Consensus       345 ~-~-~~~i~iwd~  355 (432)
                      + . ++.+++|++
T Consensus       278 ~s~~d~~i~v~~~  290 (343)
T 3lrv_A          278 YSNESNSLTIYKF  290 (343)
T ss_dssp             EETTTTEEEEEEE
T ss_pred             ecCCCCcEEEEEE
Confidence            5 3 799999999

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=2.3e-28  Score=230.67  Aligned_cols=235  Identities=14%  Similarity=0.242  Sum_probs=194.3

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|.+.|++++|  ++++|++|+.||+|++||+++++                           ....+.+|.       
T Consensus       170 ~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~---------------------------~~~~~~~h~-------  213 (435)
T 1p22_A          170 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE---------------------------MLNTLIHHC-------  213 (435)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC---------------------------EEEEECCCC-------
T ss_pred             cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc---------------------------EEEEEcCCC-------
Confidence            368999999998  78899999999999999998875                           346788898       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceee-eeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                           ..|.+++|  +  +.++++|+.||.|++||+.++.... ......+.           ..+.++++  ++.++++
T Consensus       214 -----~~v~~l~~--~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-----------~~v~~~~~--~~~~l~s  271 (435)
T 1p22_A          214 -----EAVLHLRF--N--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR-----------AAVNVVDF--DDKYIVS  271 (435)
T ss_dssp             -----SCEEEEEC--C--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS-----------SCEEEEEE--ETTEEEE
T ss_pred             -----CcEEEEEE--c--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC-----------CcEEEEEe--CCCEEEE
Confidence                 99999999  4  4599999999999999998776332 22333444           67778877  7788888


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      ++.  |+.+++||++   +.+++..+ .+|...|.++++  +++.+++| .|+.|++||++ ++.++..+       .+|
T Consensus       272 ~~~--dg~i~vwd~~---~~~~~~~~-~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~-~~~~~~~~-------~~h  335 (435)
T 1p22_A          272 ASG--DRTIKVWNTS---TCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE-CGACLRVL-------EGH  335 (435)
T ss_dssp             EET--TSEEEEEETT---TCCEEEEE-ECCSSCEEEEEE--ETTEEEEEETTSCEEEEETT-TCCEEEEE-------CCC
T ss_pred             EeC--CCeEEEEECC---cCcEEEEE-cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC-CCCEEEEE-------eCC
Confidence            888  9999999998   77888888 789999999999  46789999 99999999999 67777766       789


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccc-----cceeecccccccCCccceeeeecceeEEEEcCCCCE
Q 014005          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-----SARILRDAAESHGSKSFFTEIIASISDIKFANDGQH  341 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~  341 (432)
                      ...|.+++|  ++ .+|++|+.||.|++||++++.....     .+..+.+|             ...|.+++|  ++++
T Consensus       336 ~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h-------------~~~v~~l~~--~~~~  397 (435)
T 1p22_A          336 EELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-------------SGRVFRLQF--DEFQ  397 (435)
T ss_dssp             SSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-------------SSCCCCEEE--CSSC
T ss_pred             cCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC-------------CCCeEEEEe--CCCE
Confidence            999999999  56 8999999999999999987652100     14566666             789999999  6888


Q ss_pred             EEEee-CCeEEEEec
Q 014005          342 LLSRD-YMNLKVFRY  355 (432)
Q Consensus       342 l~s~~-~~~i~iwd~  355 (432)
                      |++|+ ||.|++||+
T Consensus       398 l~s~s~Dg~i~iwd~  412 (435)
T 1p22_A          398 IVSSSHDDTILIWDF  412 (435)
T ss_dssp             EEECCSSSEEEEEC-
T ss_pred             EEEEeCCCEEEEEEC
Confidence            99975 599999999

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-28  Score=250.64  Aligned_cols=258  Identities=14%  Similarity=0.098  Sum_probs=191.2

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|.+.|++++|+|+|++||+|+.||+|+||+..+.+..                           . ...|.       
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~---------------------------~-~~~~~-------   58 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV---------------------------I-KLEDR-------   58 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE---------------------------E-ECSSC-------
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE---------------------------E-EcCCC-------
Confidence            468899999999999999999999999999998664321                           2 22466       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           ..|.+++|  +| +++|++++.|++|++||+.+++......   +.           +.|.+++|+|++.++++|
T Consensus        59 -----~~V~~l~f--sp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~---~~-----------~~V~~v~~sp~g~~l~sg  116 (902)
T 2oaj_A           59 -----SAIKEMRF--VK-GIYLVVINAKDTVYVLSLYSQKVLTTVF---VP-----------GKITSIDTDASLDWMLIG  116 (902)
T ss_dssp             -----CCEEEEEE--ET-TTEEEEEETTCEEEEEETTTCSEEEEEE---CS-----------SCEEEEECCTTCSEEEEE
T ss_pred             -----CCEEEEEE--cC-CCEEEEEECcCeEEEEECCCCcEEEEEc---CC-----------CCEEEEEECCCCCEEEEE
Confidence                 88999999  67 7799999999999999999877443322   22           579999999999999999


Q ss_pred             eeeccceEEEEeecccccceee-----------EEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeE
Q 014005          189 EWTENMATKIANVGNSVHARCQ-----------KVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNI  255 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~-----------~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~  255 (432)
                      +.  +|.|++||++.   ..+.           ..+ .+|.+.|.+++|+|+ +..+++| .|+.| +||++ .++....
T Consensus       117 s~--dg~V~lwd~~~---~~~~~~~i~~~~~~~~~~-~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~-~~~~~~~  188 (902)
T 2oaj_A          117 LQ--NGSMIVYDIDR---DQLSSFKLDNLQKSSFFP-AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV-ENEIKQS  188 (902)
T ss_dssp             ET--TSCEEEEETTT---TEEEEEEECCHHHHHTCS-SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT-TTEEEEE
T ss_pred             cC--CCcEEEEECCC---Cccccceecccccccccc-ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC-CCceEEE
Confidence            98  99999999983   3332           122 578899999999996 4688888 99999 99999 6677666


Q ss_pred             eecCC-----------CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee---cccccccC-Cc
Q 014005          256 VDMKP-----------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL---RDAAESHG-SK  320 (432)
Q Consensus       256 ~~~~~-----------~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~h~~~~~-~~  320 (432)
                      +....           .....|...|++++|+|++ ++|++|+.||.|++||+++++...  .+.+   ..|..... ..
T Consensus       189 ~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~--~r~l~~~~~~~~~~~~~~  265 (902)
T 2oaj_A          189 FIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIM--ARTVFETEINVPQPDYIR  265 (902)
T ss_dssp             ECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEE--EECSSCSCTTSCCTTCCC
T ss_pred             EecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEE--EEeecccccCCCCCcCCC
Confidence            52210           0113456789999999999 999999999999999999876521  0112   12210000 00


Q ss_pred             cceeeeecceeEEEEc----CCC-CEEEEeeC------CeEEEEec
Q 014005          321 SFFTEIIASISDIKFA----NDG-QHLLSRDY------MNLKVFRY  355 (432)
Q Consensus       321 ~~~~~~~~~v~~~~~s----~dg-~~l~s~~~------~~i~iwd~  355 (432)
                      ..+ .+..+|.+++|+    |++ .+|++|++      ..+++|++
T Consensus       266 ~~~-~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          266 DSS-TNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             CCS-SCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             CCc-cccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            000 124579999995    553 56777633      27889884

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=4.2e-29  Score=227.83  Aligned_cols=266  Identities=11%  Similarity=0.027  Sum_probs=199.8

Q ss_pred             hccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCC-EEEEecccceEEEEEe-cCCcCCCCccccchhhhcccccc
Q 014005            7 EASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFET-VGGKNTPNQHISRSELEKQMDFT   84 (432)
Q Consensus         7 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~   84 (432)
                      .+.....|++..............|...|++++|+|+++ +|++|+.||.|++||+ ++++.                  
T Consensus        31 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~------------------   92 (342)
T 1yfq_A           31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF------------------   92 (342)
T ss_dssp             TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE------------------
T ss_pred             CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce------------------
Confidence            334455666653211111233457899999999999999 9999999999999999 77642                  


Q ss_pred             ccccCCcceeeeeec--CCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccC---------cceeeee
Q 014005           85 STSHPEYRYKTEFQS--HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD---------QKVKKIK  153 (432)
Q Consensus        85 ~~~~p~~~~~~~~~~--h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~  153 (432)
                                ..+.+  |.            ..|.+++|  +| +.++++++.|+.|++||+.+         ++...  
T Consensus        93 ----------~~~~~~~~~------------~~v~~l~~--~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--  145 (342)
T 1yfq_A           93 ----------QALTNNEAN------------LGICRICK--YG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN--  145 (342)
T ss_dssp             ----------EECBSCCCC------------SCEEEEEE--ET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--
T ss_pred             ----------EeccccCCC------------CceEEEEe--CC-CCEEEEEcCCCeEEEEcccccccccccccCCeee--
Confidence                      46677  88            99999999  67 89999999999999999986         44222  


Q ss_pred             ecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecc-cccceeeEEeecCCCCCeeEEEeCC-CCC
Q 014005          154 EMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN-SVHARCQKVYPHAHDFNINSISNNS-DCE  231 (432)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  231 (432)
                      .+. +.           ..+.+++|+++.  +++++.  ++.+++||++. . ........ ..|...+.+++|+| +++
T Consensus       146 ~~~-~~-----------~~v~~~~~~~~~--l~~~~~--d~~i~i~d~~~~~-~~~~~~~~-~~~~~~i~~i~~~~~~~~  207 (342)
T 1yfq_A          146 NTK-VK-----------NKIFTMDTNSSR--LIVGMN--NSQVQWFRLPLCE-DDNGTIEE-SGLKYQIRDVALLPKEQE  207 (342)
T ss_dssp             SSS-SC-----------CCEEEEEECSSE--EEEEES--TTEEEEEESSCCT-TCCCEEEE-CSCSSCEEEEEECSGGGC
T ss_pred             EEe-eC-----------CceEEEEecCCc--EEEEeC--CCeEEEEECCccc-cccceeee-cCCCCceeEEEECCCCCC
Confidence            122 22           688999999888  777776  99999999985 2 12222233 67888999999999 999


Q ss_pred             EEEEE-cCCeEEEEeCCCC-----CceeeEeecCCC--CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccc
Q 014005          232 TFVSA-DDLRINLWNLEIS-----DQCFNIVDMKPS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC  303 (432)
Q Consensus       232 ~l~~~-~d~~i~lwd~~~~-----~~~~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~  303 (432)
                      +++++ .||.+++|+++..     ......+.....  .-.+|...|++++|+|++ ++|++++.||.|++||+++++. 
T Consensus       208 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~-  285 (342)
T 1yfq_A          208 GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKK-  285 (342)
T ss_dssp             EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEE-
T ss_pred             EEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCccHhH-
Confidence            99999 9999999999844     144444411100  001234599999999999 9999999999999999998876 


Q ss_pred             cccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCe-EEEEe
Q 014005          304 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN-LKVFR  354 (432)
Q Consensus       304 ~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~-i~iwd  354 (432)
                         +..+.+|            |...|.+++  |+|++|+++ .||. .+.|.
T Consensus       286 ---~~~~~~~------------h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          286 ---IKNFAKF------------NEDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             ---EEECCCC------------SSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             ---hhhhhcc------------cCCCceEec--CCCCeEEEEecCCccccccc
Confidence               5667763            257899999  999999997 5576 44444

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.6e-28  Score=228.25  Aligned_cols=265  Identities=12%  Similarity=0.074  Sum_probs=187.8

Q ss_pred             cchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCC
Q 014005           11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPE   90 (432)
Q Consensus        11 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   90 (432)
                      ...|++-.  ++......++|.+.|.+++|||+|++||+++.||.|+|||.++                           
T Consensus        66 ~~~~~~~~--~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---------------------------  116 (588)
T 2j04_A           66 ENKLDFEL--AQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---------------------------  116 (588)
T ss_dssp             CCTTTTSC--CCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---------------------------
T ss_pred             cceEEEEe--CCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---------------------------
Confidence            34455543  2333344557788999999999999999999999999999533                           


Q ss_pred             cceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcce-----eeeeec----CCCCcc
Q 014005           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-----KKIKEM----DHFPFV  161 (432)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~----~~~~~~  161 (432)
                        ++..+. |..-   +.    ...|.+++|  +|||++|++|+.||+|++||+.++..     ..+..+    ..|.  
T Consensus       117 --~l~~l~-~~~~---~~----~~sv~svaf--SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~--  182 (588)
T 2j04_A          117 --MLTNLD-SKGN---LS----SRTYHCFEW--NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSK--  182 (588)
T ss_dssp             --EEEECC-CSSC---ST----TTCEEEEEE--CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC--
T ss_pred             --eeeecc-CCCc---cc----cccEEEEEE--cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccc--
Confidence              223445 5400   00    035999999  99999999999999999999998753     112222    3344  


Q ss_pred             ccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeE
Q 014005          162 SSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRI  241 (432)
Q Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i  241 (432)
                               +.|.+++|+|++  ++.++.  |+.+++|++.........+++..+|...|.+++|+  ++.+|++.+++|
T Consensus       183 ---------~~V~sVawSPdg--Laass~--D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tI  247 (588)
T 2j04_A          183 ---------DWVTHIVWYEDV--LVAALS--NNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCPGYV  247 (588)
T ss_dssp             ---------CCEEEEEEETTE--EEEEET--TCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECSSEE
T ss_pred             ---------ccEEEEEEcCCc--EEEEeC--CCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeCCeE
Confidence                     789999999999  666666  99999999985432223345534788999999999  688998867999


Q ss_pred             EEEeCCCCCceeeEeecCCCCcCCCCcceEEEEE--cCCCCcEEEEEeCCCeEEEEEccccc------cc---cccceee
Q 014005          242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCNLLAYSSSRGFVRLVDMRQSA------LC---DHSARIL  310 (432)
Q Consensus       242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~~dg~i~iwd~~~~~------~~---~~~~~~~  310 (432)
                      ++||+. +++.....       .+|.+.|..++|  +|++ ..+++++.||+ ++|....-.      ..   .+.++.+
T Consensus       248 kLWd~~-~~~~~~~~-------~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW  317 (588)
T 2j04_A          248 HKIDLK-NYSISSLK-------TGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKW  317 (588)
T ss_dssp             EEEETT-TTEEEEEE-------CSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHT
T ss_pred             EEEECC-CCeEEEEE-------cCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEE
Confidence            999999 44432222       479999999999  9999 99999999999 999974210      00   0000111


Q ss_pred             cccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005          311 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (432)
Q Consensus       311 ~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~  347 (432)
                      ..   .-.....+.. ...|.+++|||||+.+|++.+
T Consensus       318 ~~---~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          318 ST---IWNEFNNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             TT---TTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             EC---CCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence            00   0001122222 567999999999999999753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.5e-28  Score=228.17  Aligned_cols=251  Identities=12%  Similarity=0.118  Sum_probs=194.3

Q ss_pred             cCCCcEEEEEEcCCCCEE-EEecccceEEEEEec--CCcCCCCccccchhhhccccccccccCCcceeeeee--cCCccc
Q 014005           30 QDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEF  104 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~h~~~~  104 (432)
                      .|.+.|++++|+|+|++| ++|+.||.|+|||+.  +++.                           ...+.  .|.   
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~---------------------------~~~~~~~~~~---  149 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV---------------------------LKLRKRFCFS---  149 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC---------------------------EEEEEEEECS---
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce---------------------------eeeeecccCC---
Confidence            566789999999999996 899999999999998  5542                           23444  455   


Q ss_pred             cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceee--eeecCCCCccccccccccccccccccCCCC-
Q 014005          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK--IKEMDHFPFVSSENTLLAEKNFMNEHNPPS-  181 (432)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  181 (432)
                               ..|.+++|  +|++++|++++.||.|++|++..+....  ...+..+.           ..|.+++|+|+ 
T Consensus       150 ---------~~v~~~~~--sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~-----------~~v~~~~~sp~~  207 (450)
T 2vdu_B          150 ---------KRPNAISI--AEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV-----------SMLTDVHLIKDS  207 (450)
T ss_dssp             ---------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECS-----------SCEEEEEEEECT
T ss_pred             ---------CCceEEEE--cCCCCEEEEEeCCCcEEEEecCCcccccccceeeeccc-----------CceEEEEEcCCC
Confidence                     88999999  8999999999999999999998766331  11223333           78999999999 


Q ss_pred             --CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeec
Q 014005          182 --FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM  258 (432)
Q Consensus       182 --~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~  258 (432)
                        +.++++++.  |+.|++||+.   .+.++..+..+|...|.+++|+ ++++|+++ .|+.|++||++ +++.+..+..
T Consensus       208 ~~~~~l~s~~~--d~~i~vwd~~---~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~  280 (450)
T 2vdu_B          208 DGHQFIITSDR--DEHIKISHYP---QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWK-TGKNLSTFDY  280 (450)
T ss_dssp             TSCEEEEEEET--TSCEEEEEES---CTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETT-TCCEEEEEEC
T ss_pred             CCCcEEEEEcC--CCcEEEEECC---CCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECC-CCcEeeeecc
Confidence              999999988  9999999998   5666666436899999999999 99999999 99999999999 6666666532


Q ss_pred             CC------------------CCcCCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEc--cccccccccceeeccccccc
Q 014005          259 KP------------------SNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDM--RQSALCDHSARILRDAAESH  317 (432)
Q Consensus       259 ~~------------------~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~h~~~~  317 (432)
                      ..                  .........|.+++|+|++ ++|++++ .|+.|++||+  .++.. ...+..+..|    
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~-l~~~~~~~~~----  354 (450)
T 2vdu_B          281 NSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGD-LALKQIITFP----  354 (450)
T ss_dssp             HHHHGGGCCTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTC-EEEEEEEECS----
T ss_pred             hhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCc-eeeccEeccC----
Confidence            10                  0001234579999999999 8888888 8999999999  44311 1114556553    


Q ss_pred             CCccceeeeecceeEEEEcCCCCEEEEee-------CCeEEEEec
Q 014005          318 GSKSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKVFRY  355 (432)
Q Consensus       318 ~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-------~~~i~iwd~  355 (432)
                                ..|.+++|+|++.++++++       ++.|.+|.+
T Consensus       355 ----------~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~  389 (450)
T 2vdu_B          355 ----------YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY  389 (450)
T ss_dssp             ----------SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred             ----------CceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence                      6899999999654554433       345899987

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=8.1e-28  Score=226.49  Aligned_cols=246  Identities=14%  Similarity=0.155  Sum_probs=184.3

Q ss_pred             cceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCc--------ceeeeeecCCCCccccccccccccccccccCCCCCc-
Q 014005          114 EKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQ--------KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-  183 (432)
Q Consensus       114 ~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  183 (432)
                      +.|++++|  +|+ +.+|++++.||.|++||+...        .......+..|.           ..+.+++|+|++. 
T Consensus       129 ~~v~~l~~--~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~-----------~~v~~l~~~~~~~~  195 (430)
T 2xyi_A          129 GEVNRARY--MPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ-----------KEGYGLSWNPNLNG  195 (430)
T ss_dssp             SCCSEEEE--ETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS-----------SCCCCEEECTTSTT
T ss_pred             CcEEEEEE--CCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC-----------CCeEEEEeCCCCCC
Confidence            89999999  676 679999999999999999762        222333334444           7899999999988 


Q ss_pred             ceecceeeccceEEEEeecccccc----eeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCC--ceeeE
Q 014005          184 HGYHLEWTENMATKIANVGNSVHA----RCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISD--QCFNI  255 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~--~~~~~  255 (432)
                      ++++++.  +|.|++|++......    .....+ .+|...|.+++|+| ++..++++ .|+.|++||++...  .....
T Consensus       196 ~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~  272 (430)
T 2xyi_A          196 YLLSASD--DHTICLWDINATPKEHRVIDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT  272 (430)
T ss_dssp             EEEEECT--TSCEEEEETTSCCBGGGEEECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred             eEEEEeC--CCeEEEEeCCCCCCCCceeccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence            8888888  999999999852111    224455 68999999999999 67788888 99999999999432  34444


Q ss_pred             eecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEE
Q 014005          256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF  335 (432)
Q Consensus       256 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~  335 (432)
                      +       ..|...|++++|+|++..+|++|+.||.|++||+++....   +..+..|             ...|.+++|
T Consensus       273 ~-------~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~~~~~h-------------~~~v~~i~~  329 (430)
T 2xyi_A          273 V-------DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---LHSFESH-------------KDEIFQVQW  329 (430)
T ss_dssp             E-------ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEEEECC-------------SSCEEEEEE
T ss_pred             e-------ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eEEeecC-------------CCCEEEEEE
Confidence            3       6888999999999998558999999999999999974432   5777776             789999999


Q ss_pred             cCCCC-EEEEe-eCCeEEEEecCc--------------ceeEeecceeeeehhhhhcccccccccce-eeEEEEeecccc
Q 014005          336 ANDGQ-HLLSR-DYMNLKVFRYEP--------------VMTLSFCGIYVWILRQLQHSRFMSIYALS-CVIYIITTLYLI  398 (432)
Q Consensus       336 s~dg~-~l~s~-~~~~i~iwd~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~  398 (432)
                      +|+++ +|+++ .++.|++||+..              ...+..+..        ....+..+.... ....+++++.||
T Consensus       330 sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------h~~~v~~~~~~p~~~~~l~s~s~dg  401 (430)
T 2xyi_A          330 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG--------HTAKISDFSWNPNEPWIICSVSEDN  401 (430)
T ss_dssp             CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC--------CSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCC--------CCCCceEEEECCCCCCEEEEEECCC
Confidence            99996 57776 459999999922              112222211        111222222222 223688999999


Q ss_pred             eeeeeccC
Q 014005          399 NLSALSAG  406 (432)
Q Consensus       399 ~i~~~~~~  406 (432)
                      .|.+|+..
T Consensus       402 ~i~iw~~~  409 (430)
T 2xyi_A          402 IMQVWQMA  409 (430)
T ss_dssp             EEEEEEEC
T ss_pred             CEEEeEcc
Confidence            99999954

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=8.8e-29  Score=227.71  Aligned_cols=264  Identities=14%  Similarity=0.193  Sum_probs=192.4

Q ss_pred             hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005            6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS   85 (432)
Q Consensus         6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (432)
                      ..+.....|++... +.........|.+.|++++|+|++++|++|+.||.|++||+++++..                  
T Consensus        61 ~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~------------------  121 (368)
T 3mmy_A           61 SWANDVRCWEVQDS-GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI------------------  121 (368)
T ss_dssp             ETTSEEEEEEECTT-SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE------------------
T ss_pred             CCCCcEEEEEcCCC-CceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce------------------
Confidence            34455667776531 11111233468999999999999999999999999999999886532                  


Q ss_pred             cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005           86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN  165 (432)
Q Consensus        86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  165 (432)
                                .+.+|.            ..|.+++|+|++++.+|++++.||.|++||+.+++........         
T Consensus       122 ----------~~~~~~------------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------  170 (368)
T 3mmy_A          122 ----------QIAQHD------------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP---------  170 (368)
T ss_dssp             ----------EEEECS------------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS---------
T ss_pred             ----------eecccc------------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC---------
Confidence                      456688            8999999988899999999999999999999887644333221         


Q ss_pred             ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCE----EEEE-cCCe
Q 014005          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET----FVSA-DDLR  240 (432)
Q Consensus       166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~~~-~d~~  240 (432)
                           ..+.++.+.  ...++.+..  ++.+.+|+++..  ..........+...+.++++.++...    ++++ .|+.
T Consensus       171 -----~~~~~~~~~--~~~~~~~~~--~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~  239 (368)
T 3mmy_A          171 -----ERCYCADVI--YPMAVVATA--ERGLIVYQLENQ--PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR  239 (368)
T ss_dssp             -----SCEEEEEEE--TTEEEEEEG--GGCEEEEECSSS--CEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE
T ss_pred             -----CCceEEEec--CCeeEEEeC--CCcEEEEEeccc--cchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc
Confidence                 233333333  335555555  889999999843  22222222344556666666655544    8888 9999


Q ss_pred             EEEEeCCCCC--ceeeEeecCCCCcCCCCc------------ceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccc
Q 014005          241 INLWNLEISD--QCFNIVDMKPSNMDDLTE------------VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS  306 (432)
Q Consensus       241 i~lwd~~~~~--~~~~~~~~~~~~~~~~~~------------~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  306 (432)
                      |++||++...  .....+       ..|..            .|++++|+|++ ++|++++.||.|++||+++++.    
T Consensus       240 i~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~----  307 (368)
T 3mmy_A          240 VAIHYINPPNPAKDNFTF-------KCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDARTK----  307 (368)
T ss_dssp             EEEEESSCSCHHHHSEEE-------ECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEE----
T ss_pred             EEEEecCCCCccccceee-------eeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCCCcE----
Confidence            9999999332  233333       44443            79999999999 9999999999999999998876    


Q ss_pred             ceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005          307 ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       307 ~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~  355 (432)
                      +..+..|             ...|.+++|+|+|++|++++ |+..+.|++
T Consensus       308 ~~~~~~~-------------~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          308 LKTSEQL-------------DQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             EEECCCC-------------SSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             EEEecCC-------------CCCceEEEECCCCCeEEEEecccccccccc
Confidence            5778786             78999999999999999974 354444444

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=2.5e-26  Score=213.58  Aligned_cols=268  Identities=10%  Similarity=0.096  Sum_probs=200.7

Q ss_pred             cchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccc
Q 014005            3 LNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQM   81 (432)
Q Consensus         3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   81 (432)
                      +....+.....|....-    .....+.+...+.+++|+|+|++| ++++.|+.|++||+.+++..              
T Consensus         6 vs~~~d~~v~v~d~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~--------------   67 (391)
T 1l0q_A            6 IANSESDNISVIDVTSN----KVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--------------   67 (391)
T ss_dssp             EEETTTTEEEEEETTTT----EEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--------------
T ss_pred             EEcCCCCEEEEEECCCC----eEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE--------------
Confidence            33444555666765421    112234455679999999999976 67779999999999876532              


Q ss_pred             cccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCc
Q 014005           82 DFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPF  160 (432)
Q Consensus        82 ~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~  160 (432)
                                   ..+..+             ..+.+++|  +|++++++.+ +.++.|++||+.+++........    
T Consensus        68 -------------~~~~~~-------------~~v~~~~~--spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~----  115 (391)
T 1l0q_A           68 -------------ATVPAG-------------SSPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG----  115 (391)
T ss_dssp             -------------EEEECS-------------SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS----
T ss_pred             -------------EEEECC-------------CCccceEE--CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC----
Confidence                         344433             57899999  8999987655 56799999999988754433321    


Q ss_pred             cccccccccccccccccCCCCCcce-ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEE-EEE-c
Q 014005          161 VSSENTLLAEKNFMNEHNPPSFAHG-YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-D  237 (432)
Q Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~-~  237 (432)
                                ..+..++|++++..+ +++..  ++.+++||+.   ..+.+..+ .. ...+.+++|+|+++.+ +++ .
T Consensus       116 ----------~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d~~---~~~~~~~~-~~-~~~~~~~~~~~dg~~l~~~~~~  178 (391)
T 1l0q_A          116 ----------KSPLGLALSPDGKKLYVTNNG--DKTVSVINTV---TKAVINTV-SV-GRSPKGIAVTPDGTKVYVANFD  178 (391)
T ss_dssp             ----------SSEEEEEECTTSSEEEEEETT--TTEEEEEETT---TTEEEEEE-EC-CSSEEEEEECTTSSEEEEEETT
T ss_pred             ----------CCcceEEECCCCCEEEEEeCC--CCEEEEEECC---CCcEEEEE-ec-CCCcceEEECCCCCEEEEEeCC
Confidence                      467889999999877 56655  8999999998   66777776 33 3567999999999987 466 8


Q ss_pred             CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe---CCCeEEEEEccccccccccceeecccc
Q 014005          238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAA  314 (432)
Q Consensus       238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~  314 (432)
                      ++.|++||++ .++....+        .+...+.+++|+|++ +.|++++   .++.|++||+++++.    +..+..| 
T Consensus       179 ~~~v~~~d~~-~~~~~~~~--------~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~----~~~~~~~-  243 (391)
T 1l0q_A          179 SMSISVIDTV-TNSVIDTV--------KVEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKI----TARIPVG-  243 (391)
T ss_dssp             TTEEEEEETT-TTEEEEEE--------ECSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEE----EEEEECC-
T ss_pred             CCEEEEEECC-CCeEEEEE--------ecCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeE----EEEEecC-
Confidence            9999999999 56666554        245578999999999 7787777   689999999998775    5666664 


Q ss_pred             cccCCccceeeeecceeEEEEcCCCCEE-EEee-CCeEEEEec---CcceeEeecc
Q 014005          315 ESHGSKSFFTEIIASISDIKFANDGQHL-LSRD-YMNLKVFRY---EPVMTLSFCG  365 (432)
Q Consensus       315 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l-~s~~-~~~i~iwd~---~~~~~~~~~~  365 (432)
                                   ..+.+++|+|+|++| +++. ++.|++||+   +.+..+..+.
T Consensus       244 -------------~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~  286 (391)
T 1l0q_A          244 -------------PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK  286 (391)
T ss_dssp             -------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             -------------CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence                         467899999999988 4554 599999999   5555565553

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=5.2e-28  Score=225.86  Aligned_cols=229  Identities=17%  Similarity=0.223  Sum_probs=173.0

Q ss_pred             eeeecCCccccccchhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccc
Q 014005           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (432)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  173 (432)
                      ..+.+|.            +.|.+++|  +| ++++|++++.||.|++||+.++.........................|
T Consensus        37 ~~~~~h~------------~~v~~~~~--s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  102 (408)
T 4a11_B           37 DVERIHG------------GGINTLDI--EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV  102 (408)
T ss_dssp             EECCCCS------------SCEEEEEE--CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE
T ss_pred             eeeeccC------------CcEEEEEE--ecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE
Confidence            5677898            99999999  89 999999999999999999987753322211000000000000123789


Q ss_pred             ccccCCC-CCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC---CCEEEEE-cCCeEEEEeCCC
Q 014005          174 MNEHNPP-SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEI  248 (432)
Q Consensus       174 ~~~~~~~-~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~-~d~~i~lwd~~~  248 (432)
                      .+++|+| ++.++++++.  ++.+++||+.   ..++...+  .+...+.++.+++.   +.+++++ .|+.|++||++ 
T Consensus       103 ~~~~~~~~~~~~l~s~~~--d~~i~iwd~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-  174 (408)
T 4a11_B          103 ETVQWYPHDTGMFTSSSF--DKTLKVWDTN---TLQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK-  174 (408)
T ss_dssp             EEEEECTTCTTCEEEEET--TSEEEEEETT---TTEEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS-
T ss_pred             EEEEEccCCCcEEEEEeC--CCeEEEeeCC---CCccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC-
Confidence            9999999 7778888888  9999999998   66777766  36778999999985   4489999 99999999999 


Q ss_pred             CCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccc--ccCCccceeee
Q 014005          249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE--SHGSKSFFTEI  326 (432)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~--~~~~~~~~~~~  326 (432)
                      .+.....+       ..|...|++++|+|++..+|++++.||.|++||++++..+   ...+..|..  ..........|
T Consensus       175 ~~~~~~~~-------~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  244 (408)
T 4a11_B          175 SGSCSHIL-------QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC---LITLDQHNGKKSQAVESANTAH  244 (408)
T ss_dssp             SSCCCEEE-------CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC---SEECCTTTTCSCCCTTTSSCSC
T ss_pred             Ccceeeee-------cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc---cccccccccccceeeccccccc
Confidence            56666655       7899999999999998447999999999999999987643   344433211  11111223445


Q ss_pred             ecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005          327 IASISDIKFANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       327 ~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~  355 (432)
                      ...|.+++|+|+|++|++++ ++.|++||+
T Consensus       245 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (408)
T 4a11_B          245 NGKVNGLCFTSDGLHLLTVGTDNRMRLWNS  274 (408)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cCceeEEEEcCCCCEEEEecCCCeEEEEEC
Confidence            78999999999999999975 499999999

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=2.3e-27  Score=216.26  Aligned_cols=216  Identities=11%  Similarity=0.033  Sum_probs=171.7

Q ss_pred             eeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCCCccccccccccccc
Q 014005           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSENTLLAEKN  172 (432)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  172 (432)
                      ..+.+|.            +.|++++|  +|++++|++++.||.|++||+.++.  ......+..+.           ..
T Consensus         5 ~~~~gH~------------~~v~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-----------~~   59 (351)
T 3f3f_A            5 PFDSGHD------------DLVHDVVY--DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD-----------SS   59 (351)
T ss_dssp             CEECCCS------------SCEEEEEE--CSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCS-----------SC
T ss_pred             ccCcccc------------cceeEEEE--cCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCC-----------Cc
Confidence            3567898            99999999  8999999999999999999998653  23333444455           78


Q ss_pred             cccccCCC--CCcceecceeeccceEEEEeeccccc------ceeeEEeecCCCCCeeEEEeCCC--CCEEEEE-cCCeE
Q 014005          173 FMNEHNPP--SFAHGYHLEWTENMATKIANVGNSVH------ARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRI  241 (432)
Q Consensus       173 i~~~~~~~--~~~~~~~~~~~~~~~v~i~d~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~-~d~~i  241 (432)
                      |.+++|++  ++.++++++.  |+.|++||++....      .++...+ ..|...|.+++|+|+  +++++++ .|+.|
T Consensus        60 v~~~~~~~~~d~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v  136 (351)
T 3f3f_A           60 IVAIDWASPEYGRIIASASY--DKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGIL  136 (351)
T ss_dssp             EEEEEECCGGGCSEEEEEET--TSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEE
T ss_pred             EEEEEEcCCCCCCEEEEEcC--CCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcE
Confidence            99999999  5899999998  99999999984311      1556666 789999999999999  9999999 99999


Q ss_pred             EEEeCCCCCceeeEee------cCCCCcCCCCcceEEEEEcCC---CCcEEEEEeCCCeEEEEEccccccccccceeecc
Q 014005          242 NLWNLEISDQCFNIVD------MKPSNMDDLTEVITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  312 (432)
Q Consensus       242 ~lwd~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (432)
                      ++||++ .......+.      ........|...+.+++|+|+   + .+|++++.|+.+.+|+...++..  ....+.+
T Consensus       137 ~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~  212 (351)
T 3f3f_A          137 RLYDAL-EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLH--VAAKLPG  212 (351)
T ss_dssp             EEEECS-STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEE--EEEECCC
T ss_pred             EEecCC-ChHHhccccccccccccccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCcee--eeeecCC
Confidence            999998 444332221      111122367888999999997   6 89999999999988887766531  1355666


Q ss_pred             cccccCCccceeeeecceeEEEEcCCC----CEEEEee-CCeEEEEec
Q 014005          313 AAESHGSKSFFTEIIASISDIKFANDG----QHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       313 h~~~~~~~~~~~~~~~~v~~~~~s~dg----~~l~s~~-~~~i~iwd~  355 (432)
                      |             ...|.+++|+|++    ++|++|+ |+.|++||+
T Consensus       213 h-------------~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~  247 (351)
T 3f3f_A          213 H-------------KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI  247 (351)
T ss_dssp             C-------------CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEE
T ss_pred             C-------------CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeC
Confidence            5             7899999999998    7899975 499999999

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.1e-28  Score=243.26  Aligned_cols=255  Identities=13%  Similarity=0.037  Sum_probs=192.4

Q ss_pred             eeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccc
Q 014005           95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (432)
Q Consensus        95 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  174 (432)
                      ..+.+|.            +.|++++|  +|+++++++|+.||.|++||+..+.......+..|.           +.|.
T Consensus         3 ~~l~gH~------------~~V~~l~~--s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~-----------~~V~   57 (753)
T 3jro_A            3 VIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE-----------GPVW   57 (753)
T ss_dssp             -----CC------------CCEEEECC--CSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCS-----------SCEE
T ss_pred             eecccCc------------ceeEEEEE--CCCCCeEEEEECCCcEEEEecCCCCCccceeccCCc-----------CceE
Confidence            4678898            99999999  899999999999999999999866555555666666           8899


Q ss_pred             cccCCCC--CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCCCC
Q 014005          175 NEHNPPS--FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEIS  249 (432)
Q Consensus       175 ~~~~~~~--~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~-~d~~i~lwd~~~~  249 (432)
                      +++|+++  +.++++++.  ||.|++||+... .......+ .+|...|.+++|+|+  ++.+++| .||.|++||++. 
T Consensus        58 ~l~~s~~~~~~~l~s~s~--Dg~I~vwd~~~~-~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~-  132 (753)
T 3jro_A           58 RVDWAHPKFGTILASCSY--DGKVLIWKEENG-RWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE-  132 (753)
T ss_dssp             EEEECCTTSCSEEEEEET--TSCEEEEEEETT-EEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS-
T ss_pred             EEEecCCCCCCEEEEEeC--CCeEEEEECCCC-cccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec-
Confidence            9999988  899999998  999999999842 22255666 789999999999999  9999999 999999999984 


Q ss_pred             CceeeEeecCCCCcCCCCcceEEEEEcC-------------CCCcEEEEEeCCCeEEEEEccccccccccceeecccccc
Q 014005          250 DQCFNIVDMKPSNMDDLTEVITSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES  316 (432)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p-------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~  316 (432)
                      +......     ...+|...|.+++|+|             ++ .+|++|+.||.|++||++++.........+.+|   
T Consensus       133 ~~~~~~~-----~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h---  203 (753)
T 3jro_A          133 NGTTSPI-----IIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH---  203 (753)
T ss_dssp             SSCCCCE-----EEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEECCC---
T ss_pred             CCCccee-----EeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeecCC---
Confidence            3221111     2368889999999999             46 899999999999999999875322235666776   


Q ss_pred             cCCccceeeeecceeEEEEcCC---CCEEEEee-CCeEEEEecCcc-----eeEeecceeeeehhhhhccccccccccee
Q 014005          317 HGSKSFFTEIIASISDIKFAND---GQHLLSRD-YMNLKVFRYEPV-----MTLSFCGIYVWILRQLQHSRFMSIYALSC  387 (432)
Q Consensus       317 ~~~~~~~~~~~~~v~~~~~s~d---g~~l~s~~-~~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (432)
                                ...|.+++|+|+   |++|++|+ ||.|++||+..-     ........        ....+..+.....
T Consensus       204 ----------~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~--------~~~~v~~l~~spd  265 (753)
T 3jro_A          204 ----------SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK--------FPDVLWRASWSLS  265 (753)
T ss_dssp             ----------SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSC--------CSSCCCCEEECTT
T ss_pred             ----------CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCC--------CCCceEEEEEcCC
Confidence                      789999999999   89999975 499999999211     11111000        1112222222222


Q ss_pred             eEEEEeecccceeeeeccC
Q 014005          388 VIYIITTLYLINLSALSAG  406 (432)
Q Consensus       388 ~~~~~~g~~~~~i~~~~~~  406 (432)
                      ..++++|+.||.|.+|+..
T Consensus       266 g~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          266 GNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             TCCEEEECSSSCEECCBCC
T ss_pred             CCEEEEEcCCCEEEEEecC
Confidence            3358899999999999943

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4e-27  Score=215.01  Aligned_cols=231  Identities=13%  Similarity=0.098  Sum_probs=169.1

Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecc
Q 014005          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  203 (432)
Q Consensus       124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~  203 (432)
                      .+++.++++|+.||.|++||+.+++......               ...+..+.++|.   +++++.  |+.+++|+...
T Consensus        45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---------------~~~v~~~~~~~~---~~s~s~--D~~i~~w~~~~  104 (343)
T 3lrv_A           45 YYDKWVCMCRCEDGALHFTQLKDSKTITTIT---------------TPNPRTGGEHPA---IISRGP--CNRLLLLYPGN  104 (343)
T ss_dssp             SEEEEEEEEEEETTEEEEEEESSSSCEEEEE---------------EECCCTTCCCCS---EEEECS--TTEEEEEETTT
T ss_pred             cCCCCEEEEECCCCcEEEEECCCCcEEEEEe---------------cCCceeeeeCCc---eEEecC--CCeEEEEEccC
Confidence            3567899999999999999999887433322               157888889888   777777  99999997763


Q ss_pred             c------ccceeeEEeecCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEE
Q 014005          204 S------VHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  274 (432)
Q Consensus       204 ~------~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  274 (432)
                      .      ...+.++.+..+|...|.+++|+|  ++++++++ .|++|++||++ .+......      ...+...+++++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~------~~~~~~~i~~~~  177 (343)
T 3lrv_A          105 QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE-DDSQYIVH------SAKSDVEYSSGV  177 (343)
T ss_dssp             EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS-SSCEEEEE------CCCSSCCCCEEE
T ss_pred             ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC-CCcEEEEE------ecCCCCceEEEE
Confidence            2      134445555457778999999999  99999999 99999999999 56555443      134555799999


Q ss_pred             EcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc-cccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEE
Q 014005          275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVF  353 (432)
Q Consensus       275 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iw  353 (432)
                      |+|++ .+|++|+.||.|++||+++++..   ...+.. |             ..+|.+++|+|+|.+|++++++.|++|
T Consensus       178 ~~pdg-~~lasg~~dg~i~iwd~~~~~~~---~~~~~~~h-------------~~~v~~l~fs~~g~~l~s~~~~~v~iw  240 (343)
T 3lrv_A          178 LHKDS-LLLALYSPDGILDVYNLSSPDQA---SSRFPVDE-------------EAKIKEVKFADNGYWMVVECDQTVVCF  240 (343)
T ss_dssp             ECTTS-CEEEEECTTSCEEEEESSCTTSC---CEECCCCT-------------TSCEEEEEECTTSSEEEEEESSBEEEE
T ss_pred             ECCCC-CEEEEEcCCCEEEEEECCCCCCC---ccEEeccC-------------CCCEEEEEEeCCCCEEEEEeCCeEEEE
Confidence            99999 99999999999999999988752   156666 6             789999999999999999878899999


Q ss_pred             ec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecc-cceeeeec
Q 014005          354 RY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLY-LINLSALS  404 (432)
Q Consensus       354 d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~i~~~~  404 (432)
                      |+   +.+..+.....     ........ .+.......++++|+. ++.+.+|+
T Consensus       241 d~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~g~~l~~~s~~d~~i~v~~  289 (343)
T 3lrv_A          241 DLRKDVGTLAYPTYTI-----PEFKTGTV-TYDIDDSGKNMIAYSNESNSLTIYK  289 (343)
T ss_dssp             ETTSSTTCBSSCCCBC----------CCE-EEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EcCCCCcceeeccccc-----ccccccce-EEEECCCCCEEEEecCCCCcEEEEE
Confidence            99   33333332110     00000000 1111222235777776 99999997

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.3e-26  Score=203.77  Aligned_cols=198  Identities=13%  Similarity=0.073  Sum_probs=139.6

Q ss_pred             cceeEEEEEEcCC----CCEEEEEeC--------------------CCeEEEEEccC-cceeeeeecCCCCccccccccc
Q 014005          114 EKINRVRWCAAPN----GSMFILSTN--------------------DKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLL  168 (432)
Q Consensus       114 ~~v~~l~~~~s~~----~~~l~s~~~--------------------d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~  168 (432)
                      ..|..+++  +||    ++.+++++.                    |+.|++|++.. ++...  ....+.         
T Consensus       112 ~~v~sla~--spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~--s~~~~~---------  178 (356)
T 2w18_A          112 REIRALFC--SSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKE--NQFLMP---------  178 (356)
T ss_dssp             EEEEEECC--------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEE--EEEECC---------
T ss_pred             cceEEEEE--CCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceee--eeccCC---------
Confidence            56778888  677    777777653                    66666666632 33211  111222         


Q ss_pred             cccccccccCCC---CCcceecceeeccceEEEEeecccccceeeEEeecCCC---CCeeEEEeCCCCCEE---------
Q 014005          169 AEKNFMNEHNPP---SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHD---FNINSISNNSDCETF---------  233 (432)
Q Consensus       169 ~~~~i~~~~~~~---~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l---------  233 (432)
                        ..+..++|++   ++..+++++.  |++|+|||+.   ++++++++ .+|.   ..+.+++|+|+|.++         
T Consensus       179 --~~v~~l~fs~~~g~~~~LaSgS~--D~TIkIWDl~---TGk~l~tL-~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~  250 (356)
T 2w18_A          179 --PEETILTFAEVQGMQEALLGTTI--MNNIVIWNLK---TGQLLKKM-HIDDSYQASVCHKAYSEMGLLFIVLSHPCAK  250 (356)
T ss_dssp             --CSSCEEEEEEEETSTTEEEEEET--TSEEEEEETT---TCCEEEEE-ECCC---CCCEEEEEEETTEEEEEEC-----
T ss_pred             --CceeeEEeeccCCCCceEEEecC--CCcEEEEECC---CCcEEEEE-cCCCcceeeeEEEEECCCCCEEEEeccCCCc
Confidence              4566677777   6688888888  9999999999   78899988 4443   367778999999876         


Q ss_pred             ---EEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccccee
Q 014005          234 ---VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI  309 (432)
Q Consensus       234 ---~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  309 (432)
                         ++| .|++|++||.. ++..+.++....  ..+|...+.+..++  + .++|+++.|++|+|||+++++.    +.+
T Consensus       251 w~laSGs~D~tIklWd~~-tgk~l~v~~~~~--p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~----l~t  320 (356)
T 2w18_A          251 ESESLRSPVFQLIVINPK-TTLSVGVMLYCL--PPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQC----TAL  320 (356)
T ss_dssp             -------CCEEEEEEETT-TTEEEEEEEECC--CTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCSE----EEE
T ss_pred             ceeeccCCCcEEEEEECC-CCEEEEEEEeec--cCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCcE----EEE
Confidence               457 79999999998 676665431111  13665555544444  6 8899999999999999999986    688


Q ss_pred             ecccccccCCccceeeeecce-eEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          310 LRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       310 ~~~h~~~~~~~~~~~~~~~~v-~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      +++|             ...+ ..++|||||++|++|+. ++|+|||+
T Consensus       321 L~gH-------------~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          321 LPPV-------------SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ECCC---------------CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             ecCC-------------CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            8887             4544 46899999999999855 99999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=8.1e-27  Score=219.89  Aligned_cols=283  Identities=6%  Similarity=-0.021  Sum_probs=206.0

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      +.....+.+++|+|++.++++++.++.|++||+.+++...                      ......+.+|.       
T Consensus       119 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~----------------------~~~~~~~~~~~-------  169 (433)
T 3bws_A          119 FKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVR----------------------LSPPEKYKKKL-------  169 (433)
T ss_dssp             EECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEE----------------------ECCCHHHHTTC-------
T ss_pred             EcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEee----------------------ecCcccccccC-------
Confidence            3345567799999988888889999999999998875320                      00001345677       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           ..|.+++|  ++++.++++++.|+.|++||+.+++......  .+.           ..+.+++|+|++..++..
T Consensus       170 -----~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~l~~~  229 (433)
T 3bws_A          170 -----GFVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKATVD--LTG-----------KWSKILLYDPIRDLVYCS  229 (433)
T ss_dssp             -----CEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEEEEE--CSS-----------SSEEEEEEETTTTEEEEE
T ss_pred             -----CceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEEEEc--CCC-----------CCeeEEEEcCCCCEEEEE
Confidence                 88999999  8999999999999999999998876433322  222           568889999999887544


Q ss_pred             -eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c--------CCeEEEEeCCCCCceeeEeec
Q 014005          189 -EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--------DLRINLWNLEISDQCFNIVDM  258 (432)
Q Consensus       189 -~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~--------d~~i~lwd~~~~~~~~~~~~~  258 (432)
                       ..  ++.+++||++   .++.+..+ . ....+.+++|+|+++.++++ .        |+.|++||++ +++....+  
T Consensus       230 ~~~--~~~i~~~d~~---~~~~~~~~-~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~-~~~~~~~~--  299 (433)
T 3bws_A          230 NWI--SEDISVIDRK---TKLEIRKT-D-KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD-KEKLIDTI--  299 (433)
T ss_dssp             ETT--TTEEEEEETT---TTEEEEEC-C-CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT-TTEEEEEE--
T ss_pred             ecC--CCcEEEEECC---CCcEEEEe-c-CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC-CCcEEeec--
Confidence             35  8899999998   66677666 3 34569999999999998877 4        6799999998 55555443  


Q ss_pred             CCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (432)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d  338 (432)
                            .+...+.+++|+|++..++++++.|+.|++||+.+++.    ...+..              ...+.+++|+|+
T Consensus       300 ------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~----~~~~~~--------------~~~~~~~~~s~d  355 (433)
T 3bws_A          300 ------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV----QKSIPV--------------FDKPNTIALSPD  355 (433)
T ss_dssp             ------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE----EEEEEC--------------SSSEEEEEECTT
T ss_pred             ------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE----EEEecC--------------CCCCCeEEEcCC
Confidence                  44557899999999844667778999999999998765    355543              467899999999


Q ss_pred             CCEEEEeeC----------------CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccce
Q 014005          339 GQHLLSRDY----------------MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLIN  399 (432)
Q Consensus       339 g~~l~s~~~----------------~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  399 (432)
                      |++|++++.                |.|++||+   +.+..+..+..           .....+..+....++++..|+.
T Consensus       356 g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~-----------~~~~~~s~dg~~l~~~~~~d~~  424 (433)
T 3bws_A          356 GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQ-----------PTGLDVSPDNRYLVISDFLDHQ  424 (433)
T ss_dssp             SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSS-----------EEEEEECTTSCEEEEEETTTTE
T ss_pred             CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCC-----------CceEEEcCCCCEEEEEECCCCe
Confidence            998887532                49999999   34444433221           1111111222233455556999


Q ss_pred             eeeecc
Q 014005          400 LSALSA  405 (432)
Q Consensus       400 i~~~~~  405 (432)
                      +.+|+.
T Consensus       425 i~v~~~  430 (433)
T 3bws_A          425 IRVYRR  430 (433)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999984

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=3.8e-25  Score=205.54  Aligned_cols=261  Identities=7%  Similarity=0.048  Sum_probs=194.8

Q ss_pred             CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEc
Q 014005           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  124 (432)
Q Consensus        45 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s  124 (432)
                      .++++++.|+.|++||+++++.                           ...+..|.             .+.+++|  +
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~---------------------------~~~~~~~~-------------~~~~~~~--s   40 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKV---------------------------TATIPVGS-------------NPMGAVI--S   40 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEE---------------------------EEEEECSS-------------SEEEEEE--C
T ss_pred             EEEEEcCCCCEEEEEECCCCeE---------------------------EEEeecCC-------------CcceEEE--C
Confidence            4678899999999999988653                           35566664             5899999  8


Q ss_pred             CCCCEE-EEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecc
Q 014005          125 PNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  203 (432)
Q Consensus       125 ~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~  203 (432)
                      |+++++ ++++.|+.|++||+.+++........              ..+.+++|+|++.+++.+.. .++.|++||+. 
T Consensus        41 ~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~--------------~~v~~~~~spdg~~l~~~~~-~~~~v~v~d~~-  104 (391)
T 1l0q_A           41 PDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--------------SSPQGVAVSPDGKQVYVTNM-ASSTLSVIDTT-  104 (391)
T ss_dssp             TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--------------SSEEEEEECTTSSEEEEEET-TTTEEEEEETT-
T ss_pred             CCCCEEEEECCCCCeEEEEECCCCeEEEEEECC--------------CCccceEECCCCCEEEEEEC-CCCEEEEEECC-
Confidence            999876 56678999999999988755443322              46889999999998765432 16899999998 


Q ss_pred             cccceeeEEeecCCCCCeeEEEeCCCCCEE-EEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCc
Q 014005          204 SVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  281 (432)
Q Consensus       204 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  281 (432)
                        ..+.+..+ . +...+.+++|+|+++.+ +++ .|+.|++||++ +++....+       ..+ ..+.+++|+|++ +
T Consensus       105 --~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~-------~~~-~~~~~~~~~~dg-~  170 (391)
T 1l0q_A          105 --SNTVAGTV-K-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINTV-------SVG-RSPKGIAVTPDG-T  170 (391)
T ss_dssp             --TTEEEEEE-E-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE-------ECC-SSEEEEEECTTS-S
T ss_pred             --CCeEEEEE-e-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEEE-------ecC-CCcceEEECCCC-C
Confidence              66677666 3 44578999999999987 567 89999999998 66666655       333 447999999999 6


Q ss_pred             EE-EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee----CCeEEEEec-
Q 014005          282 LL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKVFRY-  355 (432)
Q Consensus       282 ~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~----~~~i~iwd~-  355 (432)
                      .| ++++.++.|++||+++++.    ...+..              ...+.+++|+|+|++|++++    ++.|++||+ 
T Consensus       171 ~l~~~~~~~~~v~~~d~~~~~~----~~~~~~--------------~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          171 KVYVANFDSMSISVIDTVTNSV----IDTVKV--------------EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEE----EEEEEC--------------SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             EEEEEeCCCCEEEEEECCCCeE----EEEEec--------------CCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence            55 6778899999999998765    455544              36788999999999888753    499999999 


Q ss_pred             --CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005          356 --EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       356 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                        +++..+..+..           ..+..+..+....+++++.++.+.+|+..
T Consensus       233 ~~~~~~~~~~~~~-----------~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          233 TNKITARIPVGPD-----------PAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             TTEEEEEEECCSS-----------EEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEEecCCC-----------ccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence              44455544331           11111222222345788899999999943

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=4.2e-25  Score=208.14  Aligned_cols=239  Identities=11%  Similarity=0.084  Sum_probs=191.4

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|.+.|.+++|+|+|+++++++.|+.|++||+++++.                           ...+..|.       
T Consensus       166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~---------------------------~~~~~~~~-------  211 (433)
T 3bws_A          166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY---------------------------KATVDLTG-------  211 (433)
T ss_dssp             HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECSS-------
T ss_pred             cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE---------------------------EEEEcCCC-------
Confidence            36788999999999999999999999999999987653                           35667787       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                           ..+.+++|  +|++++++++ +.|+.|++||+.+++.....  ..+            ..+..++++|++..++.
T Consensus       212 -----~~~~~~~~--~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~------------~~~~~~~~~~~g~~l~~  270 (433)
T 3bws_A          212 -----KWSKILLY--DPIRDLVYCSNWISEDISVIDRKTKLEIRKT--DKI------------GLPRGLLLSKDGKELYI  270 (433)
T ss_dssp             -----SSEEEEEE--ETTTTEEEEEETTTTEEEEEETTTTEEEEEC--CCC------------SEEEEEEECTTSSEEEE
T ss_pred             -----CCeeEEEE--cCCCCEEEEEecCCCcEEEEECCCCcEEEEe--cCC------------CCceEEEEcCCCCEEEE
Confidence                 88999999  8899888555 47999999999887643322  221            45788999999998888


Q ss_pred             ceee------ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEE-EEE-cCCeEEEEeCCCCCceeeEeecC
Q 014005          188 LEWT------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMK  259 (432)
Q Consensus       188 ~~~~------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~-~d~~i~lwd~~~~~~~~~~~~~~  259 (432)
                      +...      .++.|++||+.   .++....+  .+...+.+++|+|+++.+ +++ .|+.|++||++ +++....+   
T Consensus       271 ~~~~~~~~~~~dg~i~~~d~~---~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~-~~~~~~~~---  341 (433)
T 3bws_A          271 AQFSASNQESGGGRLGIYSMD---KEKLIDTI--GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK-EKKVQKSI---  341 (433)
T ss_dssp             EEEESCTTCSCCEEEEEEETT---TTEEEEEE--EEEECEEEEEECSSTTEEEEEETTTTEEEEEETT-TTEEEEEE---
T ss_pred             EECCCCccccCCCeEEEEECC---CCcEEeec--cCCCCcceEEECCCCCEEEEEecCCCEEEEEECC-CCcEEEEe---
Confidence            7742      27899999998   55555554  455688999999999755 566 89999999999 56666554   


Q ss_pred             CCCcCCCCcceEEEEEcCCCCcEEEEEeC---------------CCeEEEEEccccccccccceeecccccccCCcccee
Q 014005          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSS---------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (432)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~  324 (432)
                           .+...+.+++|+|++ +++++++.               ||.|++||+.+++.    +..+..            
T Consensus       342 -----~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~----~~~~~~------------  399 (433)
T 3bws_A          342 -----PVFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV----KEFWEA------------  399 (433)
T ss_dssp             -----ECSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE----EEEEEC------------
T ss_pred             -----cCCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCcE----EEEecC------------
Confidence                 355678999999999 88887776               57999999998775    466655            


Q ss_pred             eeecceeEEEEcCCCCEEEEe-e-CCeEEEEec
Q 014005          325 EIIASISDIKFANDGQHLLSR-D-YMNLKVFRY  355 (432)
Q Consensus       325 ~~~~~v~~~~~s~dg~~l~s~-~-~~~i~iwd~  355 (432)
                        ...+.+++|+|+|++|+++ . ++.|++|++
T Consensus       400 --~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~  430 (433)
T 3bws_A          400 --GNQPTGLDVSPDNRYLVISDFLDHQIRVYRR  430 (433)
T ss_dssp             --SSSEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             --CCCCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence              3678999999999999875 3 599999997

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=3.9e-26  Score=200.83  Aligned_cols=219  Identities=9%  Similarity=-0.001  Sum_probs=158.1

Q ss_pred             CCcEEEEEEcCC----CCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc--ccccCCcceeeeeecCCcccc
Q 014005           32 VDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT--STSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        32 ~~~V~~~~fsp~----g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ...|++++|+|+    ++++++++.+  +++|++.+++.+      .....+++..+  +.+.|..+.+..+.+|.    
T Consensus       111 ~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv------~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~----  178 (356)
T 2w18_A          111 IREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLV------SSSGTLSDQQVEVMTFAEDGGGKENQFLMP----  178 (356)
T ss_dssp             EEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEE------EEESSSTTCEEEEEEECTTSCEEEEEEECC----
T ss_pred             ccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEE------EecccCCCCcEEEEEECCCCceeeeeccCC----
Confidence            347999999999    9999998754  788988765532      11123344444  56677777888888898    


Q ss_pred             ccchhhhhcceeEEEEEE-cCCCCEEEEEeCCCeEEEEEccCcceeeeee-cCCCCccccccccccccccccccCCCCCc
Q 014005          106 YLKSLEIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVKKIKE-MDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~-s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  183 (432)
                              ..+..++|+| .-++.+|++++.|++|++||+.++++..... ...+.           ..+..++|+|++.
T Consensus       179 --------~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v-----------~~v~~vafSpdG~  239 (356)
T 2w18_A          179 --------PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ-----------ASVCHKAYSEMGL  239 (356)
T ss_dssp             --------CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC--------------CCCEEEEEEETTE
T ss_pred             --------CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce-----------eeeEEEEECCCCC
Confidence                    8888999943 2278999999999999999999998544332 21111           3556668899888


Q ss_pred             ceec------------ceeeccceEEEEeecccccceeeEEe----ecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 014005          184 HGYH------------LEWTENMATKIANVGNSVHARCQKVY----PHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  246 (432)
Q Consensus       184 ~~~~------------~~~~~~~~v~i~d~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~  246 (432)
                      ++++            |+.  |+++++||..   +++++..+    +.+|...+.+..++  +..+++| .|++|+|||+
T Consensus       240 ~lvs~s~~~~~w~laSGs~--D~tIklWd~~---tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl  312 (356)
T 2w18_A          240 LFIVLSHPCAKESESLRSP--VFQLIVINPK---TTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDL  312 (356)
T ss_dssp             EEEEEC------------C--CEEEEEEETT---TTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             EEEEeccCCCcceeeccCC--CcEEEEEECC---CCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEEC
Confidence            7643            444  8999999998   66666554    24666555444443  7789999 8999999999


Q ss_pred             CCCCceeeEeecCCCCcCCCCcceE-EEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005          247 EISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLVDM  297 (432)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~~~~~dg~i~iwd~  297 (432)
                      + +++++.++       .+|...+. .++|+|++ ++|++|+.|++|+|||+
T Consensus       313 ~-tGk~l~tL-------~gH~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          313 L-LGQCTALL-------PPVSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             T-TCSEEEEE-------CCC--CCCCEEEECSSS-SEEEEECTTSCEEEEEE
T ss_pred             C-CCcEEEEe-------cCCCCCeEEEEEECCCC-CEEEEEECCCcEEEecC
Confidence            9 78888876       77876554 68999999 99999999999999996

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=3.1e-25  Score=206.22  Aligned_cols=244  Identities=5%  Similarity=-0.073  Sum_probs=155.3

Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCccee---eeeecCCCCccccccccccccccccccCCC--------CCcceecceeec
Q 014005          124 APNGSMFILSTNDKTIKLWKVRDQKVK---KIKEMDHFPFVSSENTLLAEKNFMNEHNPP--------SFAHGYHLEWTE  192 (432)
Q Consensus       124 s~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~  192 (432)
                      ++++.++++++.|++|++||+..+...   .+..+..|.           +.|.+++|+|        ++.++++++.  
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~-----------~~v~~v~~~p~~~~~~~~d~~~las~s~--  164 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHH-----------NFVNDIDIADVYSADNRLAEQVIASVGD--  164 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCS-----------SCEEEEEEEEEECTTCSEEEEEEEEEET--
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCC-----------CceEEEEEccccccccCCCCCEEEEEEC--
Confidence            566778999999999999999887643   234456676           8999999987        7889999998  


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeec------------
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDM------------  258 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~------------  258 (432)
                      |+++++||+.   ...+...+ ..|...+.+++|+|++. +|++| .|++|++||++ .++.......            
T Consensus       165 D~tv~~Wd~~---~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~-t~~~~~~~~~~~~~~~~~~~s~  239 (393)
T 4gq1_A          165 DCTLIIWRLT---DEGPILAG-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWT-LNLSAEENSQTELVKNPWLLTL  239 (393)
T ss_dssp             TSEEEEEEEE---TTEEEEEE-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETT-CCC----------CSCCCSEEE
T ss_pred             CCeEEEEECC---CCceeeee-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECC-CCcccccccccCCcccceEEec
Confidence            9999999998   55566655 67889999999999875 68888 99999999998 3332221100            


Q ss_pred             ------CCCCcCCCCcceEEEEEc-CCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce-----eee
Q 014005          259 ------KPSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF-----TEI  326 (432)
Q Consensus       259 ------~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~-----~~~  326 (432)
                            ......+|...+.++.|+ |++ +.|++++.|+++++||++.++.    ...+..|..........     ...
T Consensus       240 ~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~  314 (393)
T 4gq1_A          240 NTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANND----YNEISDSTMKLGPKNLLPNVQGISL  314 (393)
T ss_dssp             ESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-----------------------CCSCSEEEECS
T ss_pred             ccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCC----CceEeeecCccccEEEccccccccc
Confidence                  000124677889999987 788 9999999999999999998765    34444432111100000     000


Q ss_pred             ecceeEEEEcC--CCCEEEEee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeeccccee
Q 014005          327 IASISDIKFAN--DGQHLLSRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINL  400 (432)
Q Consensus       327 ~~~v~~~~~s~--dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i  400 (432)
                      ........|+|  ++.++++|+ |++|++||+   .++..+..|..           ++..+.++...-++++++.+|.+
T Consensus       315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~-----------~V~svafspdG~~LA~as~~Gv~  383 (393)
T 4gq1_A          315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM-----------PIVDFCWHQDGSHLAIATEGSVL  383 (393)
T ss_dssp             SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS-----------CEEEEEECTTSSEEEEEESSEEE
T ss_pred             cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC-----------cEEEEEEcCCCCEEEEEeCCCeE
Confidence            11223334444  344666775 499999999   44444444432           33333333333467788776654


Q ss_pred             e
Q 014005          401 S  401 (432)
Q Consensus       401 ~  401 (432)
                      .
T Consensus       384 l  384 (393)
T 4gq1_A          384 L  384 (393)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.93  E-value=4.5e-24  Score=195.53  Aligned_cols=245  Identities=10%  Similarity=0.041  Sum_probs=169.9

Q ss_pred             cEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005           34 IVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (432)
Q Consensus        34 ~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  112 (432)
                      .+..+++.++++++ ++|+.|++|+|||..+++..                           ..+. |.           
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~---------------------------~~~~-~~-----------  100 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDV---------------------------SRIK-VD-----------  100 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEE---------------------------EEEE-CS-----------
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEE---------------------------EEEE-CC-----------
Confidence            57788999988887 56788899999999887532                           3444 45           


Q ss_pred             hcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc-ceeeeeecCCCCccccccccccccccccccCCCCCcceec--ce
Q 014005          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH--LE  189 (432)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~  189 (432)
                       ..|.+++|  +++  .++++ .|+.|++||+.++ +....  +.. +           ..+  +++++  .+++.  |.
T Consensus       101 -~~v~~v~~--~~~--~~~~~-~~~~i~i~d~~~~~~~~~~--~~~-~-----------~~~--~~~s~--~~la~~sg~  156 (355)
T 3vu4_A          101 -APVKDLFL--SRE--FIVVS-YGDVISVFKFGNPWKRITD--DIR-F-----------GGV--CEFSN--GLLVYSNEF  156 (355)
T ss_dssp             -SCEEEEEE--CSS--EEEEE-ETTEEEEEESSTTCCBSSC--CEE-E-----------EEE--EEEET--TEEEEEESS
T ss_pred             -CceEEEEE--cCC--EEEEE-EcCEEEEEECCCCceeeEE--ecc-C-----------Cce--EEEEc--cEEEEeCCC
Confidence             78999999  654  34444 4789999999876 32111  110 1           222  23333  44444  45


Q ss_pred             eeccceEEEEeeccccc-----c-------ee-eEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe-EEEEeCCCCCceee
Q 014005          190 WTENMATKIANVGNSVH-----A-------RC-QKVYPHAHDFNINSISNNSDCETFVSA-DDLR-INLWNLEISDQCFN  254 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~-----~-------~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~-i~lwd~~~~~~~~~  254 (432)
                      .  +|.|++||+.....     .       .+ +..+ .+|.+.|.+++|+|++++|++| .|++ |++||++ +++++.
T Consensus       157 ~--~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~-~~~~~~  232 (355)
T 3vu4_A          157 N--LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE-DGVLVR  232 (355)
T ss_dssp             C--TTCEEEEECCC------------------CCEEE-CCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT-TCCEEE
T ss_pred             c--CcEEEEEECCCCCccccccccccccccCcccEEE-EccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEE
Confidence            5  89999999984210     0       12 5667 8999999999999999999999 9998 9999999 677777


Q ss_pred             EeecCCCCcC-C-CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccc----ccccCC-cc---cee
Q 014005          255 IVDMKPSNMD-D-LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA----AESHGS-KS---FFT  324 (432)
Q Consensus       255 ~~~~~~~~~~-~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h----~~~~~~-~~---~~~  324 (432)
                      .+       . + |...|++++|+|++ ++|++++.|++|++||++.+....  ...+..+    ...... ..   ...
T Consensus       233 ~~-------~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (355)
T 3vu4_A          233 EF-------RRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQDNK--RHALKGWINMKYFQSEWSLCNFKLSV  302 (355)
T ss_dssp             EE-------ECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSCCC--SEETTTTEECCCCCCSSCSEEEECCC
T ss_pred             EE-------EcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCCcc--cccccceeeccccccccceeEEEecc
Confidence            65       4 4 88999999999999 999999999999999998654211  1121110    000000 00   000


Q ss_pred             eeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          325 EIIASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       325 ~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                      ........++|++||++|+++ .||.+++|++
T Consensus       303 ~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~  334 (355)
T 3vu4_A          303 DKHVRGCKIAWISESSLVVVWPHTRMIETFKV  334 (355)
T ss_dssp             CTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            011234679999999999997 5599999998

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=4.2e-22  Score=186.22  Aligned_cols=232  Identities=11%  Similarity=0.081  Sum_probs=174.6

Q ss_pred             CCEEEEeccc------ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhccee
Q 014005           44 GDYLAVGDRG------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  117 (432)
Q Consensus        44 g~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~  117 (432)
                      +..++.++.+      ++|++||+++...                            ..+.+|.            ..+.
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~----------------------------~~l~~~~------------~~v~  182 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ----------------------------FVVHRSP------------QPLM  182 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSC----------------------------EEEEEES------------SCEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCC----------------------------EEEeCCC------------Ccce
Confidence            5667666654      7999999975432                            4677788            8999


Q ss_pred             EEEEEEcCCCCEEEEEeCCC---eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee-cceeecc
Q 014005          118 RVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY-HLEWTEN  193 (432)
Q Consensus       118 ~l~~~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~  193 (432)
                      +++|  +|+|++|++++.++   .|++||+.+++...+..+   .           +.+..++|+|++..++ ++....+
T Consensus       183 ~~~~--Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~---~-----------~~~~~~~~spdg~~la~~~~~~g~  246 (415)
T 2hqs_A          183 SPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF---P-----------RHNGAPAFSPDGSKLAFALSKTGS  246 (415)
T ss_dssp             EEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC---S-----------SCEEEEEECTTSSEEEEEECTTSS
T ss_pred             eeEE--cCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC---C-----------CcccCEEEcCCCCEEEEEEecCCC
Confidence            9999  99999999999875   999999998876554332   2           5688999999999887 4444223


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-CC--eEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DL--RINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                      ..|.+||+.   .+++ ..+ ..|...+.+++|+|+|+.|+++ . ++  .|++||++ ++.. ..+       ..+...
T Consensus       247 ~~i~~~d~~---~~~~-~~l-~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~-~~~~-~~l-------~~~~~~  312 (415)
T 2hqs_A          247 LNLYVMDLA---SGQI-RQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN-GGAP-QRI-------TWEGSQ  312 (415)
T ss_dssp             CEEEEEETT---TCCE-EEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-SSCC-EEC-------CCSSSE
T ss_pred             ceEEEEECC---CCCE-EeC-cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC-CCCE-EEE-------ecCCCc
Confidence            469999987   4444 344 5778899999999999988877 4 55  67777887 4433 222       456677


Q ss_pred             eEEEEEcCCCCcEEEEEeCC---CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-
Q 014005          270 ITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-  345 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-  345 (432)
                      +.+++|+|+| ++|++++.+   ..|++||+.+++.     ..+..|              ..+.+++|+|||++|+++ 
T Consensus       313 ~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~-----~~l~~~--------------~~~~~~~~spdg~~l~~~s  372 (415)
T 2hqs_A          313 NQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV-----QVLSST--------------FLDETPSLAPNGTMVIYSS  372 (415)
T ss_dssp             EEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCE-----EECCCS--------------SSCEEEEECTTSSEEEEEE
T ss_pred             ccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCE-----EEecCC--------------CCcCCeEEcCCCCEEEEEE
Confidence            8999999999 888887754   5899999998764     455553              378899999999999885 


Q ss_pred             eCC---eEEEEec--CcceeEeecc
Q 014005          346 DYM---NLKVFRY--EPVMTLSFCG  365 (432)
Q Consensus       346 ~~~---~i~iwd~--~~~~~~~~~~  365 (432)
                      .++   .|++||+  .....+..+.
T Consensus       373 ~~~~~~~l~~~d~~g~~~~~l~~~~  397 (415)
T 2hqs_A          373 SQGMGSVLNLVSTDGRFKARLPATD  397 (415)
T ss_dssp             EETTEEEEEEEETTSCCEEECCCSS
T ss_pred             cCCCccEEEEEECCCCcEEEeeCCC
Confidence            334   8999999  5555555554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=3.2e-21  Score=175.41  Aligned_cols=277  Identities=12%  Similarity=0.153  Sum_probs=181.0

Q ss_pred             hhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEeccc-ceEEEEEec--CCcCCCCccccchhhhcccc
Q 014005            6 EEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRG-GRVILFETV--GGKNTPNQHISRSELEKQMD   82 (432)
Q Consensus         6 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~~~   82 (432)
                      ..+.....|++.. -++......+.+...+.+++|+|+|++|++++.+ +.|++|+++  +++.                
T Consensus        12 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~----------------   74 (343)
T 1ri6_A           12 PESQQIHVWNLNH-EGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL----------------   74 (343)
T ss_dssp             GGGTEEEEEEECT-TSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----------------
T ss_pred             CCCCeEEEEEECC-CCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce----------------
Confidence            3444556676642 1211223345677789999999999998888876 899999997  3321                


Q ss_pred             ccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeC-CCeEEEEEccCcce-eeeeecCCCCc
Q 014005           83 FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKV-KKIKEMDHFPF  160 (432)
Q Consensus        83 ~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~-~~~~~~~~~~~  160 (432)
                               ..+..+..+             ..+..++|  +|+++++++++. ++.|.+||+..+.. .........  
T Consensus        75 ---------~~~~~~~~~-------------~~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--  128 (343)
T 1ri6_A           75 ---------TFAAESALP-------------GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL--  128 (343)
T ss_dssp             ---------EEEEEEECS-------------SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC--
T ss_pred             ---------eeccccccC-------------CCCcEEEE--cCCCCEEEEEecCCCeEEEEECCCCccccccccccCC--
Confidence                     122233322             46788999  899998877764 88999999953321 122222211  


Q ss_pred             cccccccccccccccccCCCCCcceecce-eeccceEEEEeecccccceeeE--EeecCCCCCeeEEEeCCCCCEEE-EE
Q 014005          161 VSSENTLLAEKNFMNEHNPPSFAHGYHLE-WTENMATKIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFV-SA  236 (432)
Q Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~v~i~d~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~-~~  236 (432)
                                ..+..++|+|++.+++.+. .  ++.+.+||+..........  .+.......+..++|+|++++++ ++
T Consensus       129 ----------~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~  196 (343)
T 1ri6_A          129 ----------DGCHSANISPDNRTLWVPALK--QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN  196 (343)
T ss_dssp             ----------TTBCCCEECTTSSEEEEEEGG--GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred             ----------CCceEEEECCCCCEEEEecCC--CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEe
Confidence                      4578899999999887765 4  7899999998421222222  22133445788999999999765 45


Q ss_pred             -cCCeEEEEeCCC-CCce--eeEeecCCCCcCCCCcceEEEEEcCCCCcEEE-EEeCCCeEEEEEcc--cccccccccee
Q 014005          237 -DDLRINLWNLEI-SDQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMR--QSALCDHSARI  309 (432)
Q Consensus       237 -~d~~i~lwd~~~-~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~iwd~~--~~~~~~~~~~~  309 (432)
                       .++.+.+||++. .+..  ...+...+.. ......+..++|+|++ +.|+ ++..++.|.+||+.  ++..  +.+..
T Consensus       197 ~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~i~~s~dg-~~l~v~~~~~~~i~v~d~~~~~~~~--~~~~~  272 (343)
T 1ri6_A          197 ELNSSVDVWELKDPHGNIECVQTLDMMPEN-FSDTRWAADIHITPDG-RHLYACDRTASLITVFSVSEDGSVL--SKEGF  272 (343)
T ss_dssp             TTTTEEEEEESSCTTSCCEEEEEEECSCTT-CCSCCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCCE--EEEEE
T ss_pred             CCCCEEEEEEecCCCCcEEEEeeccccCcc-ccccCCccceEECCCC-CEEEEEecCCCEEEEEEEcCCCCce--EEeee
Confidence             799999999962 2221  2222111111 1123457789999999 6665 55579999999998  3221  11233


Q ss_pred             ecccccccCCccceeeeecceeEEEEcCCCCEEEEee--CCeEEEEec
Q 014005          310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKVFRY  355 (432)
Q Consensus       310 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~--~~~i~iwd~  355 (432)
                      +..+              ..+..++|+|+|++|++++  ++.+.+|++
T Consensus       273 ~~~~--------------~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          273 QPTE--------------TQPRGFNVDHSGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             EECS--------------SSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             ecCC--------------CccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence            4332              3488999999999888764  499999976

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=5.4e-21  Score=184.24  Aligned_cols=253  Identities=13%  Similarity=0.085  Sum_probs=178.5

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEe--cCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFET--VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      .+.+++|+|+|++|++++.|++|++||+  .+++                           .+.++..+           
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~---------------------------~~~~i~~g-----------  221 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT---------------------------KVAEIKIG-----------  221 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE---------------------------EEEEEECC-----------
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCc---------------------------EEEEEecC-----------
Confidence            3889999999999999999999999999  5543                           33455532           


Q ss_pred             hhcceeEEEEEEcC----CCCEEEEEe-CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          112 IEEKINRVRWCAAP----NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       112 ~~~~v~~l~~~~s~----~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                        ..+..++|  +|    +|+++++++ .+++|.+||..+++........... +. ......+..+..+.+++++..++
T Consensus       222 --~~p~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~-~~-~~~~~~~~~v~~i~~s~~~~~~~  295 (543)
T 1nir_A          222 --IEARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT-VD-TQTYHPEPRVAAIIASHEHPEFI  295 (543)
T ss_dssp             --SEEEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC-SS-SCCEESCCCEEEEEECSSSSEEE
T ss_pred             --CCcceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc-cC-ccccccCCceEEEEECCCCCEEE
Confidence              56789999  89    999999987 4899999999887754433321100 00 00000123677888998766544


Q ss_pred             c-ceeeccceEEEEeecccccceeeE--EeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCC
Q 014005          187 H-LEWTENMATKIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPS  261 (432)
Q Consensus       187 ~-~~~~~~~~v~i~d~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~  261 (432)
                      . ...  ++.|.+||....   +.+.  .+  .+...+..++|+|++++++++  .+++|.+||.. +++....++..  
T Consensus       296 vs~~~--~g~i~vvd~~~~---~~l~~~~i--~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~-tg~l~~~i~~g--  365 (543)
T 1nir_A          296 VNVKE--TGKVLLVNYKDI---DNLTVTSI--GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK-DRRLSALVDVG--  365 (543)
T ss_dssp             EEETT--TTEEEEEECTTS---SSCEEEEE--ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEEEEECS--
T ss_pred             EEECC--CCeEEEEEecCC---CcceeEEe--ccCcCccCceECCCCCEEEEEecCCCeEEEEECC-CCeEEEeeccC--
Confidence            3 333  789999999743   2222  33  356678899999999987755  68999999999 67777766321  


Q ss_pred             CcCCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEcccccc---ccccceeecccccccCCccceeeeecceeEEEEcC
Q 014005          262 NMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSAL---CDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (432)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~---~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~  337 (432)
                       ...|.+....+ ++|++..+++++. .|++|.+||+.+...   ..+.++.+..|             ...+..++|+|
T Consensus       366 -~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~-------------g~~~~~v~~~p  430 (543)
T 1nir_A          366 -KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ-------------GGGSLFIKTHP  430 (543)
T ss_dssp             -SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-------------CSCCCCEECCT
T ss_pred             -CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC-------------CCCceEEEcCC
Confidence             12354433333 5787437777776 689999999987210   01226788776             56788899999


Q ss_pred             CCCEEEEee--------CCeEEEEec
Q 014005          338 DGQHLLSRD--------YMNLKVFRY  355 (432)
Q Consensus       338 dg~~l~s~~--------~~~i~iwd~  355 (432)
                      ||++|+++.        +++|.+||+
T Consensus       431 dg~~l~v~~~~~~~~~~~~~v~v~d~  456 (543)
T 1nir_A          431 KSSHLYVDTTFNPDARISQSVAVFDL  456 (543)
T ss_dssp             TCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred             CCCcEEEecCCCCCcccCceEEEEEC
Confidence            999999975        479999999

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=9.2e-22  Score=174.88  Aligned_cols=235  Identities=11%  Similarity=0.070  Sum_probs=170.5

Q ss_pred             ccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecC-CcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ....|...|.+++|+|+|++|++++ ++.|++||+++ ++..                           ....+|.    
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~---------------------------~~~~~~~----   83 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE---------------------------KVDTGFA----   83 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE---------------------------ECCCTTC----
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce---------------------------Eeccccc----
Confidence            3456788999999999999999986 78999999988 6532                           2233332    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEe--CCCeEEEEEc--cCcceeeeeecCCCCccccccccccccccccccCCCC
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~--~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  181 (432)
                             ...+.+++|  +|+++++++++  .++...+|.+  .++....+..   .            ..+..++|+|+
T Consensus        84 -------~~~~~~~~~--spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~------------~~~~~~~~spd  139 (297)
T 2ojh_A           84 -------TICNNDHGI--SPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTK---N------------LPSYWHGWSPD  139 (297)
T ss_dssp             -------CCBCSCCEE--CTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCS---S------------SSEEEEEECTT
T ss_pred             -------cccccceEE--CCCCCEEEEEEeCCCCcceEEEEECCCCceEEeec---C------------CCccceEECCC
Confidence                   057889999  89999999998  3345555554  4444332211   1            34677899999


Q ss_pred             Cccee-cceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeec
Q 014005          182 FAHGY-HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDM  258 (432)
Q Consensus       182 ~~~~~-~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~  258 (432)
                      +..++ .+..  ++.+++|+++.. .. ....+ ..+...+.+++|+|+++.++.+  .++.+++|+++..+.....+  
T Consensus       140 g~~l~~~~~~--~~~~~l~~~~~~-~~-~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~--  212 (297)
T 2ojh_A          140 GKSFTYCGIR--DQVFDIYSMDID-SG-VETRL-THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI--  212 (297)
T ss_dssp             SSEEEEEEEE--TTEEEEEEEETT-TC-CEEEC-CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC--
T ss_pred             CCEEEEEECC--CCceEEEEEECC-CC-cceEc-ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE--
Confidence            99877 5555  788999997532 22 23344 5677889999999999988765  58999999987444444443  


Q ss_pred             CCCCcCCCCcceEEEEEcCCCCcEEEEEeCC-----------CeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (432)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  327 (432)
                           ..+...+..++|+|++ ++|++++.+           +.|.+||+.+++..  .+..+.+|             .
T Consensus       213 -----~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~~~~~-------------~  271 (297)
T 2ojh_A          213 -----TDSAYGDWFPHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE--TLFDLFGG-------------Q  271 (297)
T ss_dssp             -----CCCSEEEEEEEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE--EEEEEEES-------------T
T ss_pred             -----ecCCcccCCeEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCce--eeeccCCC-------------C
Confidence                 5667789999999999 888887765           56999999877641  02223343             5


Q ss_pred             cceeEEEEcCCCCEEEEe
Q 014005          328 ASISDIKFANDGQHLLSR  345 (432)
Q Consensus       328 ~~v~~~~~s~dg~~l~s~  345 (432)
                      ..+..++|+|||++|+++
T Consensus       272 ~~~~~~~~spdg~~l~~~  289 (297)
T 2ojh_A          272 GTMNSPNWSPDGDEFAYV  289 (297)
T ss_dssp             TTSCSCCBCTTSSEEEEE
T ss_pred             cccccceECCCCCEEEEE
Confidence            688999999999999875

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=9.7e-22  Score=197.97  Aligned_cols=249  Identities=9%  Similarity=0.085  Sum_probs=173.1

Q ss_pred             CCcEEEEEEcCCCCEEEEecc-cc-----eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCc---
Q 014005           32 VDIVSAIEFDKTGDYLAVGDR-GG-----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP---  102 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~---  102 (432)
                      ...|.+++|||||++|++++. |+     +|++||+.+++..                           ..+..+..   
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~---------------------------~~~~~~~~~~~   88 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR---------------------------LLVDSKVVLPG   88 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE---------------------------EEECGGGTC--
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee---------------------------Eccchhhcccc
Confidence            457999999999999999988 88     8999999887532                           11111110   


Q ss_pred             ---------cccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc---ceeeeeecCCCCccccccccccc
Q 014005          103 ---------EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAE  170 (432)
Q Consensus       103 ---------~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~  170 (432)
                               .......+.....|.+++|  +|||++|++++. +.|.+||+.++   ....+..   +.           
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~---~~-----------  151 (741)
T 2ecf_A           89 TETLSDEEKARRERQRIAAMTGIVDYQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTH---GE-----------  151 (741)
T ss_dssp             ------------------CCEESCCCEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCC---SS-----------
T ss_pred             cccccchhhhhhhhhhhccccCcceeEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEEccc---CC-----------
Confidence                     0000000000024788999  999999999986 99999999987   5443322   22           


Q ss_pred             cccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCC----------------eeEEEeCCCCCEEE
Q 014005          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFN----------------INSISNNSDCETFV  234 (432)
Q Consensus       171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~----------------i~~~~~~~~~~~l~  234 (432)
                      ..+..++|+|++++++.+.   ++.|.+||+.   .++..+.. ..+...                +.+++|+|||+.|+
T Consensus       152 ~~~~~~~~SPDG~~la~~~---~~~i~~~d~~---~g~~~~~~-~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~  224 (741)
T 2ecf_A          152 GFATDAKLSPKGGFVSFIR---GRNLWVIDLA---SGRQMQLT-ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIA  224 (741)
T ss_dssp             SCEEEEEECTTSSEEEEEE---TTEEEEEETT---TTEEEECC-CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEE
T ss_pred             cccccccCCCCCCEEEEEe---CCcEEEEecC---CCCEEEec-cCCccceeccccceeeeeccccccceEECCCCCEEE
Confidence            5688899999999998876   5689999998   44554443 333222                47899999999999


Q ss_pred             EE-cCC---------------------------------eEEEEeCCCC-CceeeEeecCCCCcCCCCcceEEEEEcCCC
Q 014005          235 SA-DDL---------------------------------RINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIY  279 (432)
Q Consensus       235 ~~-~d~---------------------------------~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  279 (432)
                      ++ .|+                                 .|.+||++ + ++.....     ....|...+..++| |||
T Consensus       225 ~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~-~~~~~~~~~-----~~~~~~~~~~~~~~-pDg  297 (741)
T 2ecf_A          225 YARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA-EQAQTQWID-----LGKEQDIYLARVNW-RDP  297 (741)
T ss_dssp             EEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS-TTCCCEEEC-----CCSCSSEEEEEEEE-EET
T ss_pred             EEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC-CCCceEEec-----CCCCcceEEEEEEe-CCC
Confidence            87 655                                 78889988 4 4433321     00257788999999 999


Q ss_pred             CcEEEEEeC-----CCeEEEEEccccccccccceeecccccccCCccceeeeec---ceeEEEEcCCCCEEEEeeC-CeE
Q 014005          280 CNLLAYSSS-----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA---SISDIKFANDGQHLLSRDY-MNL  350 (432)
Q Consensus       280 ~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~---~v~~~~~s~dg~~l~s~~~-~~i  350 (432)
                       +.|++++.     +..|++||+.+++.    ...+..|.            ..   .+..++|+|||+++++++. +.+
T Consensus       298 -~~l~~~~~~~~~~~~~i~~~d~~~g~~----~~~~~~~~------------~~~~~~~~~~~~spdg~~~~~~~~~g~~  360 (741)
T 2ecf_A          298 -QHLSFQRQSRDQKKLDLVEVTLASNQQ----RVLAHETS------------PTWVPLHNSLRFLDDGSILWSSERTGFQ  360 (741)
T ss_dssp             -TEEEEEEEETTSSEEEEEEEETTTCCE----EEEEEEEC------------SSCCCCCSCCEECTTSCEEEEECTTSSC
T ss_pred             -CEEEEEEecccCCeEEEEEEECCCCce----EEEEEcCC------------CCcCCcCCceEECCCCeEEEEecCCCcc
Confidence             87776653     56899999998875    34444420            11   4568999999998888754 767


Q ss_pred             EEEec
Q 014005          351 KVFRY  355 (432)
Q Consensus       351 ~iwd~  355 (432)
                      +||.+
T Consensus       361 ~l~~~  365 (741)
T 2ecf_A          361 HLYRI  365 (741)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77766

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.89  E-value=3.1e-21  Score=180.30  Aligned_cols=222  Identities=12%  Similarity=0.075  Sum_probs=169.6

Q ss_pred             ccccCCCcEEEEEEcCCCCEEEEecccc---eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005           27 EELQDVDIVSAIEFDKTGDYLAVGDRGG---RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (432)
Q Consensus        27 ~~~~h~~~V~~~~fsp~g~~l~t~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~  103 (432)
                      ....|.+.|.+++|+|+|++|++++.++   .|++||+.+++.                            ..+..|.  
T Consensus       173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~----------------------------~~l~~~~--  222 (415)
T 2hqs_A          173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV----------------------------RQVASFP--  222 (415)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE----------------------------EEEECCS--
T ss_pred             EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE----------------------------EEeecCC--
Confidence            3346788999999999999999999875   999999988652                            2456677  


Q ss_pred             ccccchhhhhcceeEEEEEEcCCCCEEE-EEeCCC--eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC
Q 014005          104 FDYLKSLEIEEKINRVRWCAAPNGSMFI-LSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  180 (432)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  180 (432)
                                ..+.+++|  +|||++|+ +++.++  .|++||+.+++...+..   +.           ..+..++|+|
T Consensus       223 ----------~~~~~~~~--spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~---~~-----------~~~~~~~~sp  276 (415)
T 2hqs_A          223 ----------RHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD---GR-----------SNNTEPTWFP  276 (415)
T ss_dssp             ----------SCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC---CS-----------SCEEEEEECT
T ss_pred             ----------CcccCEEE--cCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC---CC-----------CcccceEECC
Confidence                      78999999  99999888 555555  49999998877544322   22           5678899999


Q ss_pred             CCcceecceeeccc--eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC---CeEEEEeCCCCCceee
Q 014005          181 SFAHGYHLEWTENM--ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---LRINLWNLEISDQCFN  254 (432)
Q Consensus       181 ~~~~~~~~~~~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d---~~i~lwd~~~~~~~~~  254 (432)
                      ++.+++.++.. ++  .+.+||+.   .++.. .+ ..+...+.+++|+|+|++|+++ .+   ..|++||++ +++.. 
T Consensus       277 dg~~l~~~s~~-~g~~~i~~~d~~---~~~~~-~l-~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~-~~~~~-  348 (415)
T 2hqs_A          277 DSQNLAFTSDQ-AGRPQVYKVNIN---GGAPQ-RI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA-TGGVQ-  348 (415)
T ss_dssp             TSSEEEEEECT-TSSCEEEEEETT---SSCCE-EC-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT-TCCEE-
T ss_pred             CCCEEEEEECC-CCCcEEEEEECC---CCCEE-EE-ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC-CCCEE-
Confidence            99988877641 33  67777876   33332 33 4566788999999999999977 43   589999999 45443 


Q ss_pred             EeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC---eEEEEEccccccccccceeecccccccCCccceeeeeccee
Q 014005          255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS  331 (432)
Q Consensus       255 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~  331 (432)
                      .+       ..+. .+.+++|+|++ ++|++++.++   .|++||+..+.     .+.+..|             .+.|.
T Consensus       349 ~l-------~~~~-~~~~~~~spdg-~~l~~~s~~~~~~~l~~~d~~g~~-----~~~l~~~-------------~~~v~  401 (415)
T 2hqs_A          349 VL-------SSTF-LDETPSLAPNG-TMVIYSSSQGMGSVLNLVSTDGRF-----KARLPAT-------------DGQVK  401 (415)
T ss_dssp             EC-------CCSS-SCEEEEECTTS-SEEEEEEEETTEEEEEEEETTSCC-----EEECCCS-------------SSEEE
T ss_pred             Ee-------cCCC-CcCCeEEcCCC-CEEEEEEcCCCccEEEEEECCCCc-----EEEeeCC-------------CCCCc
Confidence            22       3343 78999999999 8888888776   79999988544     4777776             68999


Q ss_pred             EEEEcCCC
Q 014005          332 DIKFANDG  339 (432)
Q Consensus       332 ~~~~s~dg  339 (432)
                      +++|+|.-
T Consensus       402 ~~~~~~~~  409 (415)
T 2hqs_A          402 FPAWSPYL  409 (415)
T ss_dssp             EEEECCCC
T ss_pred             CCcccccc
Confidence            99999964

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=2.6e-21  Score=194.26  Aligned_cols=245  Identities=11%  Similarity=0.031  Sum_probs=171.0

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      .+.+++|+|+|+++++ +.||+|++||+.+++..                           ..+.+|...         .
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~---------------------------~~~~~~~~~---------~   60 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST---------------------------VLIEGKKIE---------S   60 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE---------------------------EEECTTTTT---------T
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE---------------------------EEecccccc---------c
Confidence            4678999999997776 78999999999887632                           344445400         0


Q ss_pred             cceeEEEEEEcCCCCEEEEEeCC---------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          114 EKINRVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                      ..|.+++|  +|||++|++++.+         +.+.+||+.+++...+.....+.           ..+..++|+|+++.
T Consensus        61 ~~v~~~~~--SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~-----------~~~~~~~~SPdG~~  127 (723)
T 1xfd_A           61 LRAIRYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN-----------AKLQYAGWGPKGQQ  127 (723)
T ss_dssp             TTCSEEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS-----------CCCSBCCBCSSTTC
T ss_pred             cccceEEE--CCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccc-----------ccccccEECCCCCE
Confidence            14899999  9999999999764         78889999988764444333222           45788999999999


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCC------------------eeEEEeCCCCCEEEEE-cCC------
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFN------------------INSISNNSDCETFVSA-DDL------  239 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~------------------i~~~~~~~~~~~l~~~-~d~------  239 (432)
                      ++.+.   ++.|.+||+.   .++..+.. ..+...                  +.+++|+|||+.|+++ .|+      
T Consensus       128 la~~~---~~~i~~~~~~---~g~~~~~~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~  200 (723)
T 1xfd_A          128 LIFIF---ENNIYYCAHV---GKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIM  200 (723)
T ss_dssp             EEEEE---TTEEEEESSS---SSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEE
T ss_pred             EEEEE---CCeEEEEECC---CCceEEEe-cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceE
Confidence            98876   4789999998   44555544 333332                  3789999999999987 442      


Q ss_pred             ----------------------------eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeC---
Q 014005          240 ----------------------------RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---  288 (432)
Q Consensus       240 ----------------------------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---  288 (432)
                                                  .|++||+. ++.....+.. +.....+...+..++|+||| +++++...   
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~-~~~~~~~l~~-~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~  277 (723)
T 1xfd_A          201 ELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN-GPTHDLEMMP-PDDPRMREYYITMVKWATST-KVAVTWLNRAQ  277 (723)
T ss_dssp             EECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS-SSCCCEECCC-CCCGGGSSEEEEEEEESSSS-EEEEEEEETTS
T ss_pred             EeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC-CCceeEEeeC-CccCCCccceeEEEEEeCCC-eEEEEEEcCCC
Confidence                                        78888887 4443333210 01112246779999999999 88877653   


Q ss_pred             -CCeEEEEEccccccccccceeecccccccCCccceeeeecce----eEEEEcCCCCEEEE--ee-CC------eEEEEe
Q 014005          289 -RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI----SDIKFANDGQHLLS--RD-YM------NLKVFR  354 (432)
Q Consensus       289 -dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v----~~~~~s~dg~~l~s--~~-~~------~i~iwd  354 (432)
                       +..|++||+.+++.    ...+..+            +...+    ..++|+|||++|+.  +. ++      .|++||
T Consensus       278 ~~~~i~~~d~~~g~~----~~~~~~~------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          278 NVSILTLCDATTGVC----TKKHEDE------------SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             CEEEEEEEETTTCCE----EEEEEEE------------CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             CeEEEEEEeCCCCcc----eEEEEec------------cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence             35799999998774    3443331            02333    37899999997774  32 35      577787

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=2.1e-20  Score=166.07  Aligned_cols=223  Identities=10%  Similarity=0.103  Sum_probs=162.9

Q ss_pred             EecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCC
Q 014005           49 VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS  128 (432)
Q Consensus        49 t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~  128 (432)
                      .++.|++|++||+.+++.                            ..+..|.            ..|.+++|  +|+++
T Consensus        17 ~~~~~~~i~~~d~~~~~~----------------------------~~~~~~~------------~~v~~~~~--spdg~   54 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKM----------------------------RVVWQTP------------ELFEAPNW--SPDGK   54 (297)
T ss_dssp             -CCCCEEEEEEETTTTEE----------------------------EEEEEES------------SCCEEEEE--CTTSS
T ss_pred             CCCcceeEEEEeCCCCce----------------------------eeeccCC------------cceEeeEE--CCCCC
Confidence            456789999999987653                            2455576            88999999  99999


Q ss_pred             EEEEEeCCCeEEEEEccC-cceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccc
Q 014005          129 MFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA  207 (432)
Q Consensus       129 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~  207 (432)
                      +|++++ ++.|.+||+.+ ++...+.... .           ...+.+++|+|++.+++.+....++...+|.++.. ..
T Consensus        55 ~l~~~~-~~~i~~~d~~~~~~~~~~~~~~-~-----------~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~-~~  120 (297)
T 2ojh_A           55 YLLLNS-EGLLYRLSLAGDPSPEKVDTGF-A-----------TICNNDHGISPDGALYAISDKVEFGKSAIYLLPST-GG  120 (297)
T ss_dssp             EEEEEE-TTEEEEEESSSCCSCEECCCTT-C-----------CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETT-CC
T ss_pred             EEEEEc-CCeEEEEeCCCCCCceEecccc-c-----------cccccceEECCCCCEEEEEEeCCCCcceEEEEECC-CC
Confidence            999987 78999999998 7654432211 1           15678899999999999888533556667766432 22


Q ss_pred             eeeEEeecCCCCCeeEEEeCCCCCEEE-EE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEE
Q 014005          208 RCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY  285 (432)
Q Consensus       208 ~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  285 (432)
                      . ...+  .+...+..++|+|+++.++ ++ .++.+++|+++........+       ..+...+.+++|+|++ +.|++
T Consensus       121 ~-~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~s~dg-~~l~~  189 (297)
T 2ojh_A          121 T-PRLM--TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL-------THGEGRNDGPDYSPDG-RWIYF  189 (297)
T ss_dssp             C-CEEC--CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC-------CCSSSCEEEEEECTTS-SEEEE
T ss_pred             c-eEEe--ecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc-------ccCCCccccceECCCC-CEEEE
Confidence            2 2333  2333588999999999888 56 89999999976333333332       5667789999999999 77666


Q ss_pred             Ee-CCCeEEEEEcc-ccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eC-----------CeEE
Q 014005          286 SS-SRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-----------MNLK  351 (432)
Q Consensus       286 ~~-~dg~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~-----------~~i~  351 (432)
                      ++ .++.+++|++. .+..    ...+..|             ...+..++|+|+|++|+.+ .+           +.|+
T Consensus       190 ~~~~~~~~~i~~~~~~~~~----~~~~~~~-------------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~  252 (297)
T 2ojh_A          190 NSSRTGQMQIWRVRVDGSS----VERITDS-------------AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ  252 (297)
T ss_dssp             EECTTSSCEEEEEETTSSC----EEECCCC-------------SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred             EecCCCCccEEEECCCCCC----cEEEecC-------------CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence            55 58999999987 3332    4556554             5678899999999998875 32           5699


Q ss_pred             EEec
Q 014005          352 VFRY  355 (432)
Q Consensus       352 iwd~  355 (432)
                      +||+
T Consensus       253 ~~d~  256 (297)
T 2ojh_A          253 LMDM  256 (297)
T ss_dssp             EEET
T ss_pred             EEec
Confidence            9999

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=2.4e-20  Score=170.27  Aligned_cols=267  Identities=9%  Similarity=0.030  Sum_probs=170.5

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecc---cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ..+...+..++|+|+|+ |++++.   ++.|.+|++++++.                         +.+..+..+.    
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-------------------------~~~~~~~~~~----   85 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-------------------------HKLNTVVAPG----   85 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-------------------------EEEEEEEEES----
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-------------------------EEeeeeecCC----
Confidence            34556778899999999 555444   68999999977542                         2233444455    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEe-CCCeEEEEEcc-CcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  183 (432)
                              ..+..++|  +|+|++|++++ .++.|.+|++. .+....+........  ..........+..++|+|+++
T Consensus        86 --------~~p~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~spdg~  153 (347)
T 3hfq_A           86 --------TPPAYVAV--DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH--GPRPEQDGSHIHYTDLTPDNR  153 (347)
T ss_dssp             --------CCCSEEEE--ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCC--CSSTTCSSCCEEEEEECTTSC
T ss_pred             --------CCCEEEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCC--CCCccccCCCceEEEECCCCc
Confidence                    67889999  89999888887 68999999995 344333332221110  000000112466789999999


Q ss_pred             ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCCCC-Cce--eeEeec
Q 014005          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEIS-DQC--FNIVDM  258 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~-~d~~i~lwd~~~~-~~~--~~~~~~  258 (432)
                      .++....  ++.+.+|++...........+.......+..++|+|+|+++++ + .++.+.+|+++.. +..  ...+..
T Consensus       154 l~v~~~~--~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~  231 (347)
T 3hfq_A          154 LAVIDLG--SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT  231 (347)
T ss_dssp             EEEEETT--TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred             EEEEeCC--CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee
Confidence            4444333  7799999998322222222221233446888999999997665 4 7899999998831 222  112211


Q ss_pred             CCCCcCCCCcceEEEEEcCCCCcEE-EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC
Q 014005          259 KPSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (432)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~  337 (432)
                      .+... .....+..++|+|+| ++| ++...++.|.+||+..... ...+..+..|             ...+..++|+|
T Consensus       232 ~~~~~-~~~~~~~~i~~spdG-~~l~v~~~~~~~v~v~~~~~~g~-~~~~~~~~~~-------------~~~~~~~~~sp  295 (347)
T 3hfq_A          232 IPADY-TAHNGAAAIRLSHDG-HFLYVSNRGYNTLAVFAVTADGH-LTLIQQISTE-------------GDFPRDFDLDP  295 (347)
T ss_dssp             SCTTC-CSCCEEEEEEECTTS-CEEEEEEETTTEEEEEEECGGGC-EEEEEEEECS-------------SSCCCEEEECT
T ss_pred             cCCCC-CCCCcceeEEECCCC-CEEEEEeCCCCEEEEEEECCCCc-EEEeEEEecC-------------CCCcCeEEECC
Confidence            11111 112458899999999 766 5566789999999973221 0112333332             34678999999


Q ss_pred             CCCEEEEe-eC-CeEEEEec
Q 014005          338 DGQHLLSR-DY-MNLKVFRY  355 (432)
Q Consensus       338 dg~~l~s~-~~-~~i~iwd~  355 (432)
                      ||++|+++ .+ +.|.+|++
T Consensus       296 dg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          296 TEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             TSSEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEEcCCCcEEEEEE
Confidence            99988876 34 89999966

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=2.1e-19  Score=162.76  Aligned_cols=237  Identities=8%  Similarity=0.063  Sum_probs=161.3

Q ss_pred             EEEcCCCCE-EEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcce
Q 014005           38 IEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (432)
Q Consensus        38 ~~fsp~g~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (432)
                      ..|.+++++ +++++.++.|++||.++++..                           ..+..+.            ..+
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~~------------~~~   43 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL---------------------------NQITLGY------------DFV   43 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEE---------------------------EEEECCC------------CEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCccccee---------------------------eeEEccC------------Ccc
Confidence            346666655 678888999999999887632                           3444444            556


Q ss_pred             eEEEEEEcCCCCEEEEEeC-CCeEEEEEccCcce-eeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005          117 NRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (432)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  194 (432)
                       .++|  +|+++++++++. ++.|.+||+.+++. .......  .           ....+++|+|++.+++.... .++
T Consensus        44 -~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~-----------~~~~~~~~s~dg~~l~~~~~-~~~  106 (331)
T 3u4y_A           44 -DTAI--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG--Q-----------SSMADVDITPDDQFAVTVTG-LNH  106 (331)
T ss_dssp             -EEEE--CSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC--S-----------SCCCCEEECTTSSEEEECCC-SSS
T ss_pred             -eEEE--cCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC--C-----------CCccceEECCCCCEEEEecC-CCC
Confidence             8999  899997766655 89999999988875 3222221  1           23334899999999884443 123


Q ss_pred             --eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCe-EEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          195 --ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       195 --~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                        .+.+||+.   ..+.+..+ . ......+++|+|+|++++++  .++. +.+|+++..+.....-    .........
T Consensus       107 ~~~i~v~d~~---~~~~~~~~-~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~----~~~~~~~~~  177 (331)
T 3u4y_A          107 PFNMQSYSFL---KNKFISTI-P-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG----QEFISGGTR  177 (331)
T ss_dssp             SCEEEEEETT---TTEEEEEE-E-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE----EEEECSSSS
T ss_pred             cccEEEEECC---CCCeEEEE-E-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC----CccccCCCC
Confidence              89999998   56666666 2 34467899999999866654  5677 9999998433322110    000123345


Q ss_pred             eEEEEEcCCCCcE-EEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-e-
Q 014005          270 ITSAEFHPIYCNL-LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-  346 (432)
Q Consensus       270 v~~~~~~p~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~-  346 (432)
                      +..++|+|++ +. ++++..++.|.+||+.+++.. +.+..+..              ...+..++|+|||++|+.+ . 
T Consensus       178 ~~~~~~spdg-~~l~v~~~~~~~v~v~d~~~~~~~-~~~~~~~~--------------~~~~~~~~~spdg~~l~v~~~~  241 (331)
T 3u4y_A          178 PFNITFTPDG-NFAFVANLIGNSIGILETQNPENI-TLLNAVGT--------------NNLPGTIVVSRDGSTVYVLTES  241 (331)
T ss_dssp             EEEEEECTTS-SEEEEEETTTTEEEEEECSSTTSC-EEEEEEEC--------------SSCCCCEEECTTSSEEEEECSS
T ss_pred             ccceEECCCC-CEEEEEeCCCCeEEEEECCCCccc-ceeeeccC--------------CCCCceEEECCCCCEEEEEEcC
Confidence            7999999999 64 455557899999999987641 01233433              3567889999999977664 3 


Q ss_pred             CCeEEEEec
Q 014005          347 YMNLKVFRY  355 (432)
Q Consensus       347 ~~~i~iwd~  355 (432)
                      ++.|.+||+
T Consensus       242 ~~~i~~~d~  250 (331)
T 3u4y_A          242 TVDVFNFNQ  250 (331)
T ss_dssp             EEEEEEEET
T ss_pred             CCEEEEEEC
Confidence            388999999

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.87  E-value=3.4e-20  Score=178.65  Aligned_cols=235  Identities=8%  Similarity=0.083  Sum_probs=169.5

Q ss_pred             EEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeE
Q 014005           39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR  118 (432)
Q Consensus        39 ~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~  118 (432)
                      .|+|++.++++++.|++|.+||..+++.                           +.++..+.            . +..
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~---------------------------~~~i~~g~------------~-~~~  183 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKI---------------------------VKVIDTGY------------A-VHI  183 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECST------------T-EEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceE---------------------------EEEEecCc------------c-cce
Confidence            4889999999999999999999988763                           35665443            3 788


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEc--cCcceeeeeecCCCCccccccccccccccccccCCC----CCcceecceeec
Q 014005          119 VRWCAAPNGSMFILSTNDKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP----SFAHGYHLEWTE  192 (432)
Q Consensus       119 l~~~~s~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~  192 (432)
                      ++|  +|+|+++++++.|+.|.+||+  .+++....  +...            .....++|+|    ++++++.+... 
T Consensus       184 v~~--spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~--i~~g------------~~p~~va~sp~~~~dg~~l~v~~~~-  246 (543)
T 1nir_A          184 SRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAE--IKIG------------IEARSVESSKFKGYEDRYTIAGAYW-  246 (543)
T ss_dssp             EEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEE--EECC------------SEEEEEEECCSTTCTTTEEEEEEEE-
T ss_pred             EEE--CCCCCEEEEECCCCeEEEEECcCCCCcEEEE--EecC------------CCcceEEeCCCcCCCCCEEEEEEcc-
Confidence            999  999999999999999999999  66653322  2211            4568899999    99999887642 


Q ss_pred             cceEEEEeecccccceeeEEeecC---------C-CCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCCCCCceeeEeecCC
Q 014005          193 NMATKIANVGNSVHARCQKVYPHA---------H-DFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKP  260 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~---------~-~~~i~~~~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (432)
                      ++.+.+||..   +.++++.+...         | ...+.++.++|+++.+++ . .++.|.+||+. ....+....   
T Consensus       247 ~~~v~v~D~~---t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~-~~~~l~~~~---  319 (543)
T 1nir_A          247 PPQFAIMDGE---TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK-DIDNLTVTS---  319 (543)
T ss_dssp             SSEEEEEETT---TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT-TSSSCEEEE---
T ss_pred             CCeEEEEecc---ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec-CCCcceeEE---
Confidence            7899999988   66777766211         2 237889999998776654 4 89999999998 333333110   


Q ss_pred             CCcCCCCcceEEEEEcCCCCcEEEE-EeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC-
Q 014005          261 SNMDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-  338 (432)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d-  338 (432)
                         ..+...+..+.|+|++ ++|++ +..+++|.+||+.++++    +..+... ..|        |.+....+ ++|+ 
T Consensus       320 ---i~~~~~~~~~~~spdg-~~l~va~~~~~~v~v~D~~tg~l----~~~i~~g-~~p--------h~g~g~~~-~~p~~  381 (543)
T 1nir_A          320 ---IGAAPFLHDGGWDSSH-RYFMTAANNSNKVAVIDSKDRRL----SALVDVG-KTP--------HPGRGANF-VHPKY  381 (543)
T ss_dssp             ---EECCSSCCCEEECTTS-CEEEEEEGGGTEEEEEETTTTEE----EEEEECS-SSB--------CCTTCEEE-EETTT
T ss_pred             ---eccCcCccCceECCCC-CEEEEEecCCCeEEEEECCCCeE----EEeeccC-CCC--------CCCCCccc-CCCCC
Confidence               1234567889999999 76554 45689999999999876    4555430 000        02222222 4777 


Q ss_pred             CCEEEEe--eCCeEEEEec
Q 014005          339 GQHLLSR--DYMNLKVFRY  355 (432)
Q Consensus       339 g~~l~s~--~~~~i~iwd~  355 (432)
                      |++++++  ++++|.+||+
T Consensus       382 g~~~~s~~~~d~~V~v~d~  400 (543)
T 1nir_A          382 GPVWSTSHLGDGSISLIGT  400 (543)
T ss_dssp             EEEEEEEBSSSSEEEEEEC
T ss_pred             ccEEEeccCCCceEEEEEe
Confidence            7777776  3599999998

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=5.4e-21  Score=179.31  Aligned_cols=227  Identities=10%  Similarity=-0.001  Sum_probs=152.6

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ...++.+++++++.++++++.++ +++|+................+..           ...... ..+.          
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~----------   92 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVD-----------KVQGLL-VPMK----------   92 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEE-----------CCCCEE-ECCS----------
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccc-----------cCcccc-ccCC----------
Confidence            44689999999999999999887 999986542110000000000000           000000 1123          


Q ss_pred             hhcceeEEEEEEcCCCCEEE----EEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          112 IEEKINRVRWCAAPNGSMFI----LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~----s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                        ..|.+++|  +|++++|+    +++.|+.|++||+.++.....   .  .                            
T Consensus        93 --~~v~~l~~--spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~---~--~----------------------------  135 (434)
T 2oit_A           93 --FPIHHLAL--SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK---Q--Q----------------------------  135 (434)
T ss_dssp             --SCEEEEEE--CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC---S--S----------------------------
T ss_pred             --CcccEEEE--cCCCCEEEEEEeccCCCceEEEEEccccccCCc---C--C----------------------------
Confidence              78999999  89999999    788899999999976420000   0  0                            


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                           ..           .....+.+ .+|...|.+++|+|+ +.+|+++ .||+|++||++ .+......       .+
T Consensus       136 -----~~-----------~~~~~~~~-~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~-~~~~~~~~-------~~  190 (434)
T 2oit_A          136 -----KR-----------PFAYHKLL-KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT-ETVKVCAT-------LP  190 (434)
T ss_dssp             -----CC-----------CSEEEECC-CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEES-SSEEEEEE-------EC
T ss_pred             -----cc-----------eeeeeecc-CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcC-CCcceeec-------cC
Confidence                 00           00112223 578899999999998 7889998 99999999999 44443322       56


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                      |...|++++|+|++ ++|++|+.||.|++||++ ++.    ...+..|....      .+|...|.+++|++++.++++.
T Consensus       191 ~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~----~~~~~~~~~~~------~~~~~~v~~v~w~~~~~~l~~~  258 (434)
T 2oit_A          191 STVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQE----KKVIPCPPFYE------SDHPVRVLDVLWIGTYVFAIVY  258 (434)
T ss_dssp             GGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCE----EEEECCCTTCC------TTSCEEEEEEEEEETTEEEEEE
T ss_pred             CCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Ccc----cccccCCcccC------CCCceeEEEEEEecCceEEEEE
Confidence            88899999999999 999999999999999998 443    24444321000      0113489999999999888652


Q ss_pred             --eCC------eEEEEec
Q 014005          346 --DYM------NLKVFRY  355 (432)
Q Consensus       346 --~~~------~i~iwd~  355 (432)
                        .+|      .+++|++
T Consensus       259 ~~~dg~~~~~~~v~i~~l  276 (434)
T 2oit_A          259 AAADGTLETSPDVVMALL  276 (434)
T ss_dssp             EETTCCSSSCCEEEEEEC
T ss_pred             ccCCCccCCCCceEEEEe
Confidence              222      4999999

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.86  E-value=1.4e-19  Score=163.87  Aligned_cols=248  Identities=10%  Similarity=0.027  Sum_probs=166.7

Q ss_pred             CCcEEEEEEcCCCCEEEEecc-cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      ...+ +++|+|+|++|++++. ++.|.+||..+++..                          ...+..+.         
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~--------------------------~~~~~~~~---------   83 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK--------------------------VVAIQEGQ---------   83 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE--------------------------EEEEEECS---------
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee--------------------------EEecccCC---------
Confidence            4456 9999999997666555 889999999887530                          23444454         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCC---eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                         ....+++|  +|++++++++..++   .|.+||+.+++........              .....++|+|++++++.
T Consensus        84 ---~~~~~~~~--s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--------------~~~~~~~~spdg~~l~~  144 (331)
T 3u4y_A           84 ---SSMADVDI--TPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--------------YDAVGIAISPNGNGLIL  144 (331)
T ss_dssp             ---SCCCCEEE--CTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC--------------TTEEEEEECTTSSCEEE
T ss_pred             ---CCccceEE--CCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC--------------CCccceEECCCCCEEEE
Confidence               55555999  89999998655553   8999999988754433221              34578999999987776


Q ss_pred             ceeeccce-EEEEeeccccccee--eEEeecCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCCCCCce---eeEeecC
Q 014005          188 LEWTENMA-TKIANVGNSVHARC--QKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQC---FNIVDMK  259 (432)
Q Consensus       188 ~~~~~~~~-v~i~d~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~-~-~d~~i~lwd~~~~~~~---~~~~~~~  259 (432)
                      .... ++. +.+|++........  ...+  .....+..++|+|+|+++++ + .++.|.+||++ +++.   +..+   
T Consensus       145 ~~~~-~~~~i~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~-~~~~~~~~~~~---  217 (331)
T 3u4y_A          145 IDRS-SANTVRRFKIDADGVLFDTGQEFI--SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ-NPENITLLNAV---  217 (331)
T ss_dssp             EEET-TTTEEEEEEECTTCCEEEEEEEEE--CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS-STTSCEEEEEE---
T ss_pred             EecC-CCceEEEEEECCCCcEeecCCccc--cCCCCccceEECCCCCEEEEEeCCCCeEEEEECC-CCcccceeeec---
Confidence            6542 356 99999874211111  1222  34456899999999996654 4 78999999998 5555   4443   


Q ss_pred             CCCcCCCCcceEEEEEcCCCCcEEEEE-eCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005          260 PSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (432)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d  338 (432)
                          . ....+..++|+|++ ++++++ ..++.|.+||+.+++...  +..+..+ .....     ........++|+||
T Consensus       218 ----~-~~~~~~~~~~spdg-~~l~v~~~~~~~i~~~d~~~~~~~~--~~~~~~~-~~~~~-----~~~~~~~~~~~spd  283 (331)
T 3u4y_A          218 ----G-TNNLPGTIVVSRDG-STVYVLTESTVDVFNFNQLSGTLSF--VKSFGHG-LLIDP-----RPLFGANQMALNKT  283 (331)
T ss_dssp             ----E-CSSCCCCEEECTTS-SEEEEECSSEEEEEEEETTTTEEEE--EEEEECC-CCCCC-----GGGTTCCCEEECTT
T ss_pred             ----c-CCCCCceEEECCCC-CEEEEEEcCCCEEEEEECCCCceee--ecccccc-cccCC-----CCcccccceEECCC
Confidence                2 23557889999999 755554 467889999999876410  1122110 00000     00122356899999


Q ss_pred             CCEEEE-eeC-CeEEEEec
Q 014005          339 GQHLLS-RDY-MNLKVFRY  355 (432)
Q Consensus       339 g~~l~s-~~~-~~i~iwd~  355 (432)
                      |++|+. +.+ +.|.+||+
T Consensus       284 g~~l~v~~~~~~~v~v~d~  302 (331)
T 3u4y_A          284 ETKLFISANISRELKVFTI  302 (331)
T ss_dssp             SSEEEEEETTTTEEEEEET
T ss_pred             CCEEEEecCCCCcEEEEEe
Confidence            998865 444 89999999

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=4e-19  Score=162.29  Aligned_cols=252  Identities=9%  Similarity=0.030  Sum_probs=179.6

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecc-------cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCc
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDR-------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP  102 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~  102 (432)
                      .....+..++|+|+|++|++++.       ++.|.+||..+++..                           ..+...  
T Consensus        38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~--   88 (353)
T 3vgz_A           38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT---------------------------QAIHND--   88 (353)
T ss_dssp             EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE---------------------------EEEEES--
T ss_pred             hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE---------------------------EEEecC--
Confidence            34567889999999998887763       568999999886532                           333322  


Q ss_pred             cccccchhhhhcceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC
Q 014005          103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (432)
Q Consensus       103 ~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  181 (432)
                                 ..+..++|  ++++++++.+ ..++.|.+||+.+++.............    .......+..++++|+
T Consensus        89 -----------~~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~d  151 (353)
T 3vgz_A           89 -----------LKPFGATI--NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT----EEVRPLQPRELVADDA  151 (353)
T ss_dssp             -----------SCCCSEEE--ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC----SSCCCCEEEEEEEETT
T ss_pred             -----------CCcceEEE--CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc----cccCCCCCceEEECCC
Confidence                       44678899  8899865554 5579999999998875443333211000    0000012567899999


Q ss_pred             CcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCC
Q 014005          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (432)
Q Consensus       182 ~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (432)
                      +..++.+....++.+.+||..   +.+....+ ..+...+.+++|+|+++.++++ .++.+.+||.. +++....+... 
T Consensus       152 g~~l~~~~~~~~~~i~~~d~~---~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~-  225 (353)
T 3vgz_A          152 TNTVYISGIGKESVIWVVDGG---NIKLKTAI-QNTGKMSTGLALDSEGKRLYTTNADGELITIDTA-DNKILSRKKLL-  225 (353)
T ss_dssp             TTEEEEEEESSSCEEEEEETT---TTEEEEEE-CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT-TTEEEEEEECC-
T ss_pred             CCEEEEEecCCCceEEEEcCC---CCceEEEe-cCCCCccceEEECCCCCEEEEEcCCCeEEEEECC-CCeEEEEEEcC-
Confidence            998887765447889999998   66777776 4455668899999999999998 89999999999 56666554221 


Q ss_pred             CCcCCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC
Q 014005          261 SNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG  339 (432)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg  339 (432)
                        ..++...+..++|+|++ +.+++++ .++.|.+||+.+++.    ...+...               ....++|+|+|
T Consensus       226 --~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~----~~~~~~~---------------~~~~~~~s~dg  283 (353)
T 3vgz_A          226 --DDGKEHFFINISLDTAR-QRAFITDSKAAEVLVVDTRNGNI----LAKVAAP---------------ESLAVLFNPAR  283 (353)
T ss_dssp             --CSSSCCCEEEEEEETTT-TEEEEEESSSSEEEEEETTTCCE----EEEEECS---------------SCCCEEEETTT
T ss_pred             --CCCCCcccceEEECCCC-CEEEEEeCCCCEEEEEECCCCcE----EEEEEcC---------------CCceEEECCCC
Confidence              12345568899999999 6555555 559999999998775    4555441               22569999999


Q ss_pred             CEEEEe--eCCeEEEEec
Q 014005          340 QHLLSR--DYMNLKVFRY  355 (432)
Q Consensus       340 ~~l~s~--~~~~i~iwd~  355 (432)
                      ++++.+  .++.|.+||+
T Consensus       284 ~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          284 NEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             TEEEEEETTTTEEEEEET
T ss_pred             CEEEEEECCCCeEEEEEC
Confidence            966554  3499999999

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.86  E-value=2e-18  Score=156.88  Aligned_cols=212  Identities=11%  Similarity=0.104  Sum_probs=141.9

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCC-CeEEEEEcc--CcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          114 EKINRVRWCAAPNGSMFILSTND-KTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d-~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                      ..+.+++|  +|+++++++++.+ +.|.+|++.  ++....+.....            ...+..++|+|++.+++.+..
T Consensus        38 ~~~~~~~~--spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~~~~~  103 (343)
T 1ri6_A           38 GQVQPMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL------------PGSLTHISTDHQGQFVFVGSY  103 (343)
T ss_dssp             SCCCCEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC------------SSCCSEEEECTTSSEEEEEET
T ss_pred             CCCceEEE--CCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc------------CCCCcEEEEcCCCCEEEEEec
Confidence            67889999  8999999888876 999999997  555444333221            136778999999997766543


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEe--ecCCCCcCCC
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV--DMKPSNMDDL  266 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~--~~~~~~~~~~  266 (432)
                       .++.+.+||+...........+  .....+.+++|+|+++.++++  .++.|.+||++..+......  ..   . ...
T Consensus       104 -~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~-~~~  176 (343)
T 1ri6_A          104 -NAGNVSVTRLEDGLPVGVVDVV--EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV---T-TVE  176 (343)
T ss_dssp             -TTTEEEEEEEETTEEEEEEEEE--CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE---E-CST
T ss_pred             -CCCeEEEEECCCCccccccccc--cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc---c-cCC
Confidence             2678999999522244455554  234468999999999977765  79999999998324332111  00   0 122


Q ss_pred             CcceEEEEEcCCCCcEEE-EEeCCCeEEEEEccc--cccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005          267 TEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~-~~~~dg~i~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  343 (432)
                      ...+..++|+|++ ++++ ++..++.|.+||+..  ++..  ....+...+....       ....+..++|+|+|++|+
T Consensus       177 ~~~~~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~~~~~~~-------~~~~~~~i~~s~dg~~l~  246 (343)
T 1ri6_A          177 GAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDMMPENFS-------DTRWAADIHITPDGRHLY  246 (343)
T ss_dssp             TCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCE--EEEEEECSCTTCC-------SCCCEEEEEECTTSSEEE
T ss_pred             CCCcceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccccCcccc-------ccCCccceEECCCCCEEE
Confidence            3468899999999 7555 445889999999953  3320  0111111000000       023567899999999887


Q ss_pred             E-e-eCCeEEEEecC
Q 014005          344 S-R-DYMNLKVFRYE  356 (432)
Q Consensus       344 s-~-~~~~i~iwd~~  356 (432)
                      . + .++.|++||+.
T Consensus       247 v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          247 ACDRTASLITVFSVS  261 (343)
T ss_dssp             EEETTTTEEEEEEEC
T ss_pred             EEecCCCEEEEEEEc
Confidence            5 4 34999999993

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=4.7e-19  Score=161.51  Aligned_cols=255  Identities=13%  Similarity=0.099  Sum_probs=173.0

Q ss_pred             EEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcce
Q 014005           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (432)
Q Consensus        37 ~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (432)
                      .++++++++++++++.+++|++||..+++..                           ..+..+.           ...+
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~~-----------~~~~   45 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVY---------------------------KSCVMPD-----------KFGP   45 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEE---------------------------EEEECSS-----------CCSS
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEE---------------------------EEEecCC-----------CCCC
Confidence            4568889999999999999999999886532                           3333221           0257


Q ss_pred             eEEEEEEcCCCCEEE-EEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee----
Q 014005          117 NRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT----  191 (432)
Q Consensus       117 ~~l~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----  191 (432)
                      ..++|  +|++++++ ++..++.|.+||+.+++..........+       ......+..++|+|++++++.+...    
T Consensus        46 ~~~~~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~-------~~~~~~~~~~~~spdg~~l~~~~~~~~~~  116 (349)
T 1jmx_B           46 GTAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP-------GEVGRSMYSFAISPDGKEVYATVNPTQRL  116 (349)
T ss_dssp             CEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST-------TEEEECSSCEEECTTSSEEEEEEEEEEEC
T ss_pred             ceeEE--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc-------ccccccccceEECCCCCEEEEEccccccc
Confidence            78999  89998665 4457899999999988754333221100       0001347789999999999888751    


Q ss_pred             ------ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcC-
Q 014005          192 ------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMD-  264 (432)
Q Consensus       192 ------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~-  264 (432)
                            .++.+.+||+......+.+..+  .+...+.+++|+|+++ ++++ ++.|.+||.. +++....+........ 
T Consensus       117 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~-~~~~~~~~~~~~~~~~~  191 (349)
T 1jmx_B          117 NDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGS-LYVA-GPDIYKMDVK-TGKYTVALPLRNWNRKG  191 (349)
T ss_dssp             SSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSC-EEEE-SSSEEEECTT-TCCEEEEECSTTCCCTT
T ss_pred             ccccccCCCeEEEEECCCccccceeeec--cCCCcccceeECCCCc-EEEc-cCcEEEEeCC-CCceeccccccccCCcc
Confidence                  1379999999843334444444  2344688999999999 5555 2339999998 5555554422110000 


Q ss_pred             ------------------------------------------------------------CCCcceEEEEEcC-CCCcEE
Q 014005          265 ------------------------------------------------------------DLTEVITSAEFHP-IYCNLL  283 (432)
Q Consensus       265 ------------------------------------------------------------~~~~~v~~~~~~p-~~~~~l  283 (432)
                                                                                  .+...+..++|+| ++ +++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l  270 (349)
T 1jmx_B          192 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQI  270 (349)
T ss_dssp             BCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEE
T ss_pred             ccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEE
Confidence                                                                        0112456778889 98 888


Q ss_pred             EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec---Ccce
Q 014005          284 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY---EPVM  359 (432)
Q Consensus       284 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~~  359 (432)
                      +++  ++.|.+||+.+++.    +..+..              ...+.+++|+|||++|+++ .++.|++||+   +.+.
T Consensus       271 ~~~--~~~v~~~d~~~~~~----~~~~~~--------------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~  330 (349)
T 1jmx_B          271 YGV--LNRLAKYDLKQRKL----IKAANL--------------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK  330 (349)
T ss_dssp             EEE--ESEEEEEETTTTEE----EEEEEC--------------SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred             EEE--cCeEEEEECccCeE----EEEEcC--------------CCCccceEECCCCCEEEEecCCCeEEEEeccccceee
Confidence            877  88999999998775    355544              2457789999999888876 4499999999   4455


Q ss_pred             eEeec
Q 014005          360 TLSFC  364 (432)
Q Consensus       360 ~~~~~  364 (432)
                      .++.+
T Consensus       331 ~~~~~  335 (349)
T 1jmx_B          331 NIKLP  335 (349)
T ss_dssp             EEECS
T ss_pred             eeecC
Confidence            55444

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=4.3e-20  Score=180.65  Aligned_cols=231  Identities=13%  Similarity=0.054  Sum_probs=162.2

Q ss_pred             CCcEEEEEEcCCCCEEEEecc-cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      ..+|++++|+|||++||+++. ||+++||++++++.                            ..+..|.         
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~----------------------------~~lt~~~---------   63 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET----------------------------VKLNREP---------   63 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE----------------------------EECCSSC---------
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc----------------------------Eeeeccc---------
Confidence            347999999999999999887 99999999976542                            2333333         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeC---CCeEEEEEccC---cceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD---QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                        ...+..++|  +|| +.+++++.   +....+|.+..   +....+..   .            ......+|+|++..
T Consensus        64 --~~~~~~~~~--spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~---~------------~~~~~~~~s~dg~~  123 (582)
T 3o4h_A           64 --INSVLDPHY--GVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA---V------------KPMRILSGVDTGEA  123 (582)
T ss_dssp             --CSEECEECT--TCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTT---S------------CSBEEEEEEECSSC
T ss_pred             --ccccccccC--CCC-eEEEEeccCCCCcceEEEEEeccCCCccccccC---C------------CCceeeeeCCCCCe
Confidence              047889999  888 77777765   45566766543   22121111   1            12334577777765


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC----CeEEEEeCCCCCceeeEeecC
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMK  259 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d----~~i~lwd~~~~~~~~~~~~~~  259 (432)
                      ++..+.. ++.+.+||+.   ++++.+.. ..+ .  .+++|+|||+.++++ .+    +.|++||++ +++.. .+   
T Consensus       124 ~~~~s~~-~~~~~l~d~~---~g~~~~l~-~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~-~g~~~-~l---  190 (582)
T 3o4h_A          124 VVFTGAT-EDRVALYALD---GGGLRELA-RLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLS-SGGLR-VF---  190 (582)
T ss_dssp             EEEEEEC-SSCEEEEEEE---TTEEEEEE-EES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETT-TCCCE-EE---
T ss_pred             EEEEecC-CCCceEEEcc---CCcEEEee-cCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCC-CCCce-Ee---
Confidence            4333222 3445599997   55555544 222 2  789999999999976 55    789999998 44433 33   


Q ss_pred             CCCcCCCCcceEEEEEcCCCCcEEEEEeCCC--eEEEEEccccccccccceeecccccccCCccceeeeecceeEEE---
Q 014005          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK---  334 (432)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~---  334 (432)
                          ..|...+..++|+||| +.|+++..++  .|++||+.+++.     ..+.+|             ...+..++   
T Consensus       191 ----~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~-----~~~~~~-------------~~~~~~~~~~~  247 (582)
T 3o4h_A          191 ----DSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSV-----EDLELP-------------SKDFSSYRPTA  247 (582)
T ss_dssp             ----CCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCE-----EECCCS-------------CSHHHHHCCSE
T ss_pred             ----ecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcE-----EEccCC-------------CcChhhhhhcc
Confidence                6777889999999999 8999888888  899999998775     355554             34455555   


Q ss_pred             -----EcCCCCEEEEe-eCCeEEEEec
Q 014005          335 -----FANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       335 -----~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                           |+|||++++++ .++++++|++
T Consensus       248 ~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          248 ITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence                 99999888876 4599999998

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=1.6e-19  Score=180.86  Aligned_cols=255  Identities=12%  Similarity=0.130  Sum_probs=169.5

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecC-----CcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG-----GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~  104 (432)
                      .+...+.+++|||+|++||++ .++.|++|++.+     ++..                           .....+...+
T Consensus       118 ~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~---------------------------~~~~~~~~~~  169 (706)
T 2z3z_A          118 DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI---------------------------AVTIDGTETL  169 (706)
T ss_dssp             CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE---------------------------ESCSCCBTTE
T ss_pred             CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE---------------------------EeccCCCCCe
Confidence            455677888999999998885 678999999887     5422                           0111111000


Q ss_pred             -cccchh-hhhcceeEEEEEEcCCCCEEEEEe---------------------------------CCCeEEEEEccCcce
Q 014005          105 -DYLKSL-EIEEKINRVRWCAAPNGSMFILST---------------------------------NDKTIKLWKVRDQKV  149 (432)
Q Consensus       105 -~~~~~~-~~~~~v~~l~~~~s~~~~~l~s~~---------------------------------~d~~i~iwd~~~~~~  149 (432)
                       ..+... +....+.++.|  +|||++|++++                                 .+..|.+||+.+++.
T Consensus       170 ~~g~~~~~ee~~~~~~~~~--SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~  247 (706)
T 2z3z_A          170 VYGQAVHQREFGIEKGTFW--SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT  247 (706)
T ss_dssp             EESSCCGGGCTTCCCSEEE--CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred             EcccchhhhhcCCCceEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence             000000 00034688999  99999999987                                 446899999998875


Q ss_pred             eeeeecCCCCccccccccccccccccccCCCCCcceecceeec---cceEEEEeecccccc-eeeEEeecCCCC---Cee
Q 014005          150 KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE---NMATKIANVGNSVHA-RCQKVYPHAHDF---NIN  222 (432)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~v~i~d~~~~~~~-~~~~~~~~~~~~---~i~  222 (432)
                      ..+.....+.           ..+..++|+|+++.++.+....   ...+.+||+.   ++ .........+..   .+.
T Consensus       248 ~~~~~~~~~~-----------~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~---~g~~~~~~~~~~~~~~~~~~~  313 (706)
T 2z3z_A          248 VYLQTGEPKE-----------KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAE---TGRFVRTLFVETDKHYVEPLH  313 (706)
T ss_dssp             EECCCCSCTT-----------CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETT---TCCEEEEEEEEECSSCCCCCS
T ss_pred             EeeccCCCCc-----------eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECC---CCceeeEEEEccCCCeECccC
Confidence            4443222222           5678999999999888876521   2389999987   44 222222112222   246


Q ss_pred             EEEeCC--CCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE-EEEcCCCCcEEEE-EeCCC----eEE
Q 014005          223 SISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS-AEFHPIYCNLLAY-SSSRG----FVR  293 (432)
Q Consensus       223 ~~~~~~--~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~-~~~dg----~i~  293 (432)
                      +++|+|  +|++++++ .|+.+++|+++..+.....+       ..+...+.. ++|+|++ +.|+. ++.++    .|.
T Consensus       314 ~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l-------~~~~~~v~~~~~~spdg-~~l~~~~~~~~~~~~~l~  385 (706)
T 2z3z_A          314 PLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV-------TKGEWEVTNFAGFDPKG-TRLYFESTEASPLERHFY  385 (706)
T ss_dssp             CCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC-------CCSSSCEEEEEEECTTS-SEEEEEESSSCTTCBEEE
T ss_pred             CceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec-------CCCCeEEEeeeEEcCCC-CEEEEEecCCCCceEEEE
Confidence            789999  99999888 89999999887445555544       556666776 7999999 65554 44544    677


Q ss_pred             EEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eC----CeEEEEec
Q 014005          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY----MNLKVFRY  355 (432)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~----~~i~iwd~  355 (432)
                      .||+.+++.     ..+..              ...+..++|||||++|+.. ++    +.+++||+
T Consensus       386 ~~d~~~~~~-----~~l~~--------------~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          386 CIDIKGGKT-----KDLTP--------------ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             EEETTCCCC-----EESCC--------------SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             EEEcCCCCc-----eeccC--------------CCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence            777776552     44432              4578899999999988763 32    57999999

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=1.3e-18  Score=157.70  Aligned_cols=243  Identities=9%  Similarity=0.062  Sum_probs=170.4

Q ss_pred             CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeec-CCccccccchhhhhc-ceeEEEEE
Q 014005           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIEE-KINRVRWC  122 (432)
Q Consensus        45 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-h~~~~~~~~~~~~~~-~v~~l~~~  122 (432)
                      ++|++++.++.|++||..+++..                           ..+.. +.            . .+..++| 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~~~------------~~~~~~~~~-   41 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVD---------------------------KVITIADA------------GPTPMVPMV-   41 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEE---------------------------EEEECTTC------------TTCCCCEEE-
T ss_pred             cEEEEcCCCCeEEEEECCCCcEE---------------------------EEEEcCCC------------CCCccceEE-
Confidence            57899999999999999876532                           33332 21            1 4788999 


Q ss_pred             EcCCCCEEE-EEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee----------
Q 014005          123 AAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT----------  191 (432)
Q Consensus       123 ~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------  191 (432)
                       +|++++++ ++..++.|.+||+.+++...........        .....+..++|+|++.+++.+...          
T Consensus        42 -s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  112 (337)
T 1pby_B           42 -APGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             -CTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             -cCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc--------cccccccceEECCCCCEEEEEecccccccccccc
Confidence             89997665 4566789999999888754433221100        001257789999999888877521          


Q ss_pred             ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCC--CC-------
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP--SN-------  262 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~--~~-------  262 (432)
                      .++.+.+||+.   ..+....+ . ....+.+++|+|++++++++ ++.|.+||++ +++....+....  ..       
T Consensus       113 ~~~~i~v~d~~---~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~s~dg  185 (337)
T 1pby_B          113 QPTRVALYDAE---TLSRRKAF-E-APRQITMLAWARDGSKLYGL-GRDLHVMDPE-AGTLVEDKPIQSWEAETYAQPDV  185 (337)
T ss_dssp             CCCEEEEEETT---TTEEEEEE-E-CCSSCCCEEECTTSSCEEEE-SSSEEEEETT-TTEEEEEECSTTTTTTTBCCCBC
T ss_pred             cCceEEEEECC---CCcEEEEE-e-CCCCcceeEECCCCCEEEEe-CCeEEEEECC-CCcEeeeeeccccCCCceeCCCc
Confidence            26899999997   55666665 2 24568889999999988887 7889999998 555544432211  00       


Q ss_pred             --------------------------------------------------cCCCCcceEEEEEcCCCCcEEEEEeCCCeE
Q 014005          263 --------------------------------------------------MDDLTEVITSAEFHPIYCNLLAYSSSRGFV  292 (432)
Q Consensus       263 --------------------------------------------------~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i  292 (432)
                                                                        ...+...+.+++|+|++ ++++++  ++.|
T Consensus       186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v  262 (337)
T 1pby_B          186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVL  262 (337)
T ss_dssp             CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEE
T ss_pred             cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCC-CEEEEe--CCeE
Confidence                                                              00112345679999999 888877  7899


Q ss_pred             EEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec---CcceeEeec
Q 014005          293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY---EPVMTLSFC  364 (432)
Q Consensus       293 ~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~  364 (432)
                      .+||+.+++.    ...+..              ...+.+++|+|||++|+++ .++.|++||+   +.+..+..+
T Consensus       263 ~~~d~~~~~~----~~~~~~--------------~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          263 ESFDLEKNAS----IKRVPL--------------PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEEETTTTEE----EEEEEC--------------SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             EEEECCCCcC----cceecC--------------CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            9999998765    455544              2467899999999988886 4499999999   455555554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.83  E-value=8.3e-19  Score=175.62  Aligned_cols=253  Identities=10%  Similarity=0.070  Sum_probs=169.4

Q ss_pred             CcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  112 (432)
                      ..|.+++|||+ +.++.+ .++.|++||+.+++.                            ..+..+.           
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~----------------------------~~l~~~~-----------  120 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV----------------------------TYLFDTN-----------  120 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE----------------------------EEEECCT-----------
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce----------------------------EEccCCc-----------
Confidence            56999999999 555554 458999999987642                            2344455           


Q ss_pred             hcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccC-----cceeeeeecCCCCcccccc-ccccccccccccCCCCCccee
Q 014005          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-----QKVKKIKEMDHFPFVSSEN-TLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~  186 (432)
                       ..+.+++|  +|||++|+++ .++.|.+||+.+     ++...+............. .......+..+.|+|++++++
T Consensus       121 -~~~~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la  196 (706)
T 2z3z_A          121 -EETASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLA  196 (706)
T ss_dssp             -TCCTTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEE
T ss_pred             -ccccCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEE
Confidence             67888999  9999999985 689999999988     7644332211110000000 000012257899999999998


Q ss_pred             cceee-------------------------------ccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEE
Q 014005          187 HLEWT-------------------------------ENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFV  234 (432)
Q Consensus       187 ~~~~~-------------------------------~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~  234 (432)
                      .+...                               .+..+.+||+.   .++...... ..+...+.+++|+|+|+.++
T Consensus       197 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  273 (706)
T 2z3z_A          197 FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA---TGKTVYLQTGEPKEKFLTNLSWSPDENILY  273 (706)
T ss_dssp             EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT---TTEEEECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred             EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC---CCceEeeccCCCCceeEeeEEEECCCCEEE
Confidence            87631                               24689999997   444443331 24667799999999999998


Q ss_pred             EE-cCC-----eEEEEeCCCCC-ceeeEeecCCCCcCCCCcceEEEEEcC--CCCcEEEEEeCCCeEEEEEcc-cccccc
Q 014005          235 SA-DDL-----RINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYSSSRGFVRLVDMR-QSALCD  304 (432)
Q Consensus       235 ~~-~d~-----~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~i~iwd~~-~~~~~~  304 (432)
                      ++ .++     .|++||++ ++ ........   ........+..++|+|  ++ +++++++.||.++||++. +++.  
T Consensus       274 ~~~~~~~~~~~~v~~~d~~-~g~~~~~~~~~---~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~--  346 (706)
T 2z3z_A          274 VAEVNRAQNECKVNAYDAE-TGRFVRTLFVE---TDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGRL--  346 (706)
T ss_dssp             EEEECTTSCEEEEEEEETT-TCCEEEEEEEE---ECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSCE--
T ss_pred             EEEeCCCCCeeEEEEEECC-CCceeeEEEEc---cCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCCE--
Confidence            87 554     89999998 45 33222200   0011112346789999  99 899999999999999886 4443  


Q ss_pred             ccceeecccccccCCccceeeeecceeE-EEEcCCCCEEEE-eeC-C----eEEEEec
Q 014005          305 HSARILRDAAESHGSKSFFTEIIASISD-IKFANDGQHLLS-RDY-M----NLKVFRY  355 (432)
Q Consensus       305 ~~~~~~~~h~~~~~~~~~~~~~~~~v~~-~~~s~dg~~l~s-~~~-~----~i~iwd~  355 (432)
                        ...+..|             ...+.. ++|+|||+.|+. +.+ +    .|+.||+
T Consensus       347 --~~~l~~~-------------~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  389 (706)
T 2z3z_A          347 --IRQVTKG-------------EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI  389 (706)
T ss_dssp             --EEECCCS-------------SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred             --EEecCCC-------------CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence              4556554             455766 799999998865 433 4    5666666

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.83  E-value=4.6e-19  Score=178.44  Aligned_cols=247  Identities=11%  Similarity=0.079  Sum_probs=171.9

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCC---cCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGG---KNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      .|.+++|||||++|++++. +.|++||+.++   +.                            ..+..|.         
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~----------------------------~~l~~~~---------  151 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV----------------------------RQLTHGE---------  151 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC----------------------------CBCCCSS---------
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE----------------------------EEcccCC---------
Confidence            4789999999999999886 89999999886   32                            2455666         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccc---cccccccccccccCCCCCcceec
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE---NTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                         ..+..++|  +|||++|++++ ++.|.+||+.+++...+............   ........+..++|+|++++++.
T Consensus       152 ---~~~~~~~~--SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~  225 (741)
T 2ecf_A          152 ---GFATDAKL--SPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAY  225 (741)
T ss_dssp             ---SCEEEEEE--CTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEE
T ss_pred             ---cccccccC--CCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEE
Confidence               78999999  99999999987 46899999998775543322111000000   00000112578999999999988


Q ss_pred             ceeec-------------------------------cceEEEEeeccccc-ceeeEEeec-CCCCCeeEEEeCCCCCEEE
Q 014005          188 LEWTE-------------------------------NMATKIANVGNSVH-ARCQKVYPH-AHDFNINSISNNSDCETFV  234 (432)
Q Consensus       188 ~~~~~-------------------------------~~~v~i~d~~~~~~-~~~~~~~~~-~~~~~i~~~~~~~~~~~l~  234 (432)
                      +....                               ...+.+||+.   . ++....... .|...+..++| |||+.|+
T Consensus       226 ~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~  301 (741)
T 2ecf_A          226 ARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA---EQAQTQWIDLGKEQDIYLARVNW-RDPQHLS  301 (741)
T ss_dssp             EEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS---TTCCCEEECCCSCSSEEEEEEEE-EETTEEE
T ss_pred             EEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC---CCCceEEecCCCCcceEEEEEEe-CCCCEEE
Confidence            76521                               0167788887   3 444333211 47778999999 9999999


Q ss_pred             EE-c-----CCeEEEEeCCCCCceeeEeecCCCCcCCCCc----ceEEEEEcCCCCcEEEEEeCCCeEEEEEccc-cccc
Q 014005          235 SA-D-----DLRINLWNLEISDQCFNIVDMKPSNMDDLTE----VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALC  303 (432)
Q Consensus       235 ~~-~-----d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~  303 (432)
                      ++ .     +..|++||++ +++...++       ..+..    .+..++|+|+| +++++++.||.++||.+.. ++  
T Consensus       302 ~~~~~~~~~~~~i~~~d~~-~g~~~~~~-------~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~~--  370 (741)
T 2ecf_A          302 FQRQSRDQKKLDLVEVTLA-SNQQRVLA-------HETSPTWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKGK--  370 (741)
T ss_dssp             EEEEETTSSEEEEEEEETT-TCCEEEEE-------EEECSSCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSSSC--
T ss_pred             EEEecccCCeEEEEEEECC-CCceEEEE-------EcCCCCcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCCCC--
Confidence            65 3     5679999998 56555544       22221    34678999999 7999999999888887652 22  


Q ss_pred             cccceeecccccccCCccceeeeecceeEE-EEcCCCCEEEE-eeC-C--eEEEEec
Q 014005          304 DHSARILRDAAESHGSKSFFTEIIASISDI-KFANDGQHLLS-RDY-M--NLKVFRY  355 (432)
Q Consensus       304 ~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~-~~s~dg~~l~s-~~~-~--~i~iwd~  355 (432)
                         ...+..|             ...+..+ .|+|||+.|+. +++ +  .++||++
T Consensus       371 ---~~~l~~~-------------~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~  411 (741)
T 2ecf_A          371 ---AAALTHG-------------NWSVDELLAVDEKAGLAYFRAGIESARESQIYAV  411 (741)
T ss_dssp             ---EEESCCS-------------SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred             ---eeeeeec-------------ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence               2455554             4567777 59999998765 443 4  8999998

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.82  E-value=7.4e-19  Score=183.19  Aligned_cols=245  Identities=12%  Similarity=0.075  Sum_probs=179.7

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      +.+...+.+++|+|+|++|+++ .++.|.+|+++..+..        .+....         .........|.       
T Consensus       241 l~~~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~--------~l~~~~---------~~~~~~~~~~~-------  295 (1045)
T 1k32_A          241 HTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE--------KIEIGD---------LESPEDRIISI-------  295 (1045)
T ss_dssp             CCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE--------ECCCCC---------CCBCCSEEEEC-------
T ss_pred             ecCCCCcceeeEcCCCCEEEEE-eCCEEEEecCCceEee--------eeccCc---------ccccccccccc-------
Confidence            3333456778999999999887 5889999998433210        000000         00000111233       


Q ss_pred             hhhhhcceeEEEEEEc-CCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccc-ccccccCCCCCccee
Q 014005          109 SLEIEEKINRVRWCAA-PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK-NFMNEHNPPSFAHGY  186 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~  186 (432)
                           ..+.+++|  + |||+++++++ ++.|.+|++.++....+   ..+.           . .+..++|+ ++..++
T Consensus       296 -----~~v~~~~~--S~pdG~~la~~~-~~~i~~~~~~~~~~~~~---~~~~-----------~~~~~~~~~s-dg~~l~  352 (1045)
T 1k32_A          296 -----PSKFAEDF--SPLDGDLIAFVS-RGQAFIQDVSGTYVLKV---PEPL-----------RIRYVRRGGD-TKVAFI  352 (1045)
T ss_dssp             -----GGGGEEEE--EECGGGCEEEEE-TTEEEEECTTSSBEEEC---SCCS-----------CEEEEEECSS-SEEEEE
T ss_pred             -----cccceeee--cCCCCCEEEEEE-cCEEEEEcCCCCceEEc---cCCC-----------cceEEeeeEc-CCCeEE
Confidence                 57899999  8 9999999888 78999999987764432   2222           3 67889999 998888


Q ss_pred             cceeeccceEE-EEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005          187 HLEWTENMATK-IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       187 ~~~~~~~~~v~-i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (432)
                      .++.  ++.+. +|++.   .... ..+ .+|...+..++|+|+|+.++++ .++.|++||++ +++.....       .
T Consensus       353 ~~s~--~~~l~~~~d~~---~~~~-~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~-tg~~~~~~-------~  417 (1045)
T 1k32_A          353 HGTR--EGDFLGIYDYR---TGKA-EKF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE-TGKPTVIE-------R  417 (1045)
T ss_dssp             EEET--TEEEEEEEETT---TCCE-EEC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEE-------E
T ss_pred             EEEC--CCceEEEEECC---CCCc-eEe-cCCccceeeeEECCCCCEEEEECCCCeEEEEECC-CCceEEec-------c
Confidence            7776  66777 88876   3333 334 3677889999999999999998 89999999998 56655544       5


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEeCCC----------eEEEEEccccccccccceeecccccccCCccceeeeecceeEEE
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSSSRG----------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  334 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~  334 (432)
                      +|...+.+++|+||| ++|++++.++          .|++||+.+++.     ..+..|             ...+..++
T Consensus       418 ~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~-----~~l~~~-------------~~~~~~~~  478 (1045)
T 1k32_A          418 SREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-----FAATTE-------------NSHDYAPA  478 (1045)
T ss_dssp             CSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-----EECSCS-------------SSBEEEEE
T ss_pred             CCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCcE-----EEeeCC-------------CcccCCce
Confidence            788889999999999 8888877654          899999998763     556664             56778899


Q ss_pred             EcCCCCEEEEeeC-CeEEEEec
Q 014005          335 FANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       335 ~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      |+|||++|+.+++ +...+|+.
T Consensus       479 ~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          479 FDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             ECTTSCEEEEEESCCCCCEECS
T ss_pred             EcCCCCEEEEEecccCCcCcch
Confidence            9999999998755 77788876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.82  E-value=7.5e-18  Score=153.84  Aligned_cols=235  Identities=9%  Similarity=0.013  Sum_probs=166.4

Q ss_pred             CCcEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           32 VDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      ...+..++|+|+|+++ +++..++.|.+||..+++..                           ..+..+... .  ...
T Consensus        88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~~~~-~--~~~  137 (353)
T 3vgz_A           88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK---------------------------GRLVLDDRK-R--TEE  137 (353)
T ss_dssp             SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE---------------------------EEEESCCCC-C--CSS
T ss_pred             CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE---------------------------EEEecCCCc-c--ccc
Confidence            4457789999999955 45566799999999887632                           333332200 0  000


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEe--CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          111 EIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                      .....+.++.|  +|+++++++++  .++.|.+||+.+++.......  ..           ..+..++++|++..++.+
T Consensus       138 ~~~~~~~~~~~--s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~-----------~~~~~~~~s~dg~~l~~~  202 (353)
T 3vgz_A          138 VRPLQPRELVA--DDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN--TG-----------KMSTGLALDSEGKRLYTT  202 (353)
T ss_dssp             CCCCEEEEEEE--ETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC--CC-----------TTCCCCEEETTTTEEEEE
T ss_pred             cCCCCCceEEE--CCCCCEEEEEecCCCceEEEEcCCCCceEEEecC--CC-----------CccceEEECCCCCEEEEE
Confidence            00013678999  89999887775  478999999998875443321  11           346788999999998888


Q ss_pred             eeeccceEEEEeecccccceeeEEeec---CCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPH---AHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNM  263 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (432)
                      ..  ++.+.+||..   +.+....+..   ++...+..++|+|+++.++++  .++.|.+||.+ +++....+..     
T Consensus       203 ~~--~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~~~-----  271 (353)
T 3vgz_A          203 NA--DGELITIDTA---DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR-NGNILAKVAA-----  271 (353)
T ss_dssp             CT--TSEEEEEETT---TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT-TCCEEEEEEC-----
T ss_pred             cC--CCeEEEEECC---CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEEEEc-----
Confidence            77  8899999998   5566655522   345578889999999987766  56999999998 5666665521     


Q ss_pred             CCCCcceEEEEEcCCCCcEE-EEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005          264 DDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  342 (432)
                        ..  ...++|+|++ +.+ ++...++.|.+||+.+++.    +..+..              ...+..++|+|||++|
T Consensus       272 --~~--~~~~~~s~dg-~~l~v~~~~~~~v~~~d~~~~~~----~~~~~~--------------~~~~~~~~~s~dg~~l  328 (353)
T 3vgz_A          272 --PE--SLAVLFNPAR-NEAYVTHRQAGKVSVIDAKSYKV----VKTFDT--------------PTHPNSLALSADGKTL  328 (353)
T ss_dssp             --SS--CCCEEEETTT-TEEEEEETTTTEEEEEETTTTEE----EEEEEC--------------CSEEEEEEECTTSCEE
T ss_pred             --CC--CceEEECCCC-CEEEEEECCCCeEEEEECCCCeE----EEEEec--------------CCCCCeEEEcCCCCEE
Confidence              11  2468999999 644 4455799999999998876    455555              3567899999999977


Q ss_pred             EEe
Q 014005          343 LSR  345 (432)
Q Consensus       343 ~s~  345 (432)
                      +.+
T Consensus       329 ~v~  331 (353)
T 3vgz_A          329 YVS  331 (353)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.82  E-value=2.9e-18  Score=160.74  Aligned_cols=178  Identities=11%  Similarity=0.138  Sum_probs=128.5

Q ss_pred             ccCCCcEEEEEEcCCCCEEE----EecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLA----VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~----t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~  104 (432)
                      +.+...|++++|+|+|++||    +|+.|++|+|||+.+......         ...       ........+.+|.   
T Consensus        89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~---------~~~-------~~~~~~~~~~~h~---  149 (434)
T 2oit_A           89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK---------QQK-------RPFAYHKLLKDAG---  149 (434)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC---------SSC-------CCSEEEECCCSGG---
T ss_pred             ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCc---------CCc-------ceeeeeeccCCCC---
Confidence            45667899999999999999    899999999999876410000         000       0011234567788   


Q ss_pred             cccchhhhhcceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005          105 DYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (432)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  183 (432)
                               ..|.+++|  +|+ +.+|++++.||+|++||++++...                                 
T Consensus       150 ---------~~V~~v~~--~p~~~~~las~s~Dg~v~iwD~~~~~~~---------------------------------  185 (434)
T 2oit_A          150 ---------GMVIDMKW--NPTVPSMVAVCLADGSIAVLQVTETVKV---------------------------------  185 (434)
T ss_dssp             ---------GSEEEEEE--CSSCTTEEEEEETTSCEEEEEESSSEEE---------------------------------
T ss_pred             ---------CceEEEEE--CCCCCCEEEEEECCCeEEEEEcCCCcce---------------------------------
Confidence                     99999999  787 789999999999999999866311                                 


Q ss_pred             ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (432)
                                                 ... .+|...|.+++|+|+|++|++| .||+|++||.+  +.....+......
T Consensus       186 ---------------------------~~~-~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~--~~~~~~~~~~~~~  235 (434)
T 2oit_A          186 ---------------------------CAT-LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT--LQEKKVIPCPPFY  235 (434)
T ss_dssp             ---------------------------EEE-ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT--CCEEEEECCCTTC
T ss_pred             ---------------------------eec-cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC--CcccccccCCccc
Confidence                                       011 3577789999999999999999 99999999998  3334433211111


Q ss_pred             cCCCCcceEEEEEcCCCCcEEEE-EeCCC------eEEEEEcccc
Q 014005          263 MDDLTEVITSAEFHPIYCNLLAY-SSSRG------FVRLVDMRQS  300 (432)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~~-~~~dg------~i~iwd~~~~  300 (432)
                      ...|...|.+++|++++ .++++ +..||      .+++|++++.
T Consensus       236 ~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          236 ESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccC
Confidence            12345589999999987 66654 34443      3899999865

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.82  E-value=2.7e-19  Score=179.47  Aligned_cols=241  Identities=8%  Similarity=0.051  Sum_probs=162.7

Q ss_pred             EEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcce
Q 014005           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (432)
Q Consensus        37 ~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (432)
                      .++|+|+|++++++ .|++|++||+.+++..                           ..+.+|...         ...+
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~---------------------------~~~~~~~~~---------~~~~   62 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY---------------------------TILSNRTMK---------SVNA   62 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEE---------------------------EEECHHHHH---------TTTC
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE---------------------------EEEcccccc---------ccce
Confidence            68999999766655 5899999999887632                           233333200         0138


Q ss_pred             eEEEEEEcCCCCEEEEEeC---------CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          117 NRVRWCAAPNGSMFILSTN---------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                      .+++|  +|||++|++++.         ++.|++||+.+++......+.              ..+..++|+|+++.++.
T Consensus        63 ~~~~~--SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~--------------~~~~~~~~SPDG~~la~  126 (719)
T 1z68_A           63 SNYGL--SPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP--------------RPIQYLCWSPVGSKLAY  126 (719)
T ss_dssp             SEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC--------------SSBCCEEECSSTTCEEE
T ss_pred             eeEEE--CCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC--------------cccccceECCCCCEEEE
Confidence            89999  999999999876         789999999988751101111              45788999999999988


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCe-----------------eEEEeCCCCCEEEEE-cCC----------
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNI-----------------NSISNNSDCETFVSA-DDL----------  239 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i-----------------~~~~~~~~~~~l~~~-~d~----------  239 (432)
                      +.   ++.|++|++.   .+.+.+....++...+                 .+++|+|||+.|+++ .|.          
T Consensus       127 ~~---~~~i~~~~~~---~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~  200 (719)
T 1z68_A          127 VY---QNNIYLKQRP---GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSY  200 (719)
T ss_dssp             EE---TTEEEEESST---TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEE
T ss_pred             EE---CCeEEEEeCC---CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeec
Confidence            74   7899999997   3444333212322222                 589999999999987 442          


Q ss_pred             ------------------------eEEEEeCCCCCceeeEeecC-CCCcCCCCcceEEEEEcCCCCcEEEEEeCC----C
Q 014005          240 ------------------------RINLWNLEISDQCFNIVDMK-PSNMDDLTEVITSAEFHPIYCNLLAYSSSR----G  290 (432)
Q Consensus       240 ------------------------~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g  290 (432)
                                              .|++||+. ++.....+.+. +..+.+|...+.+++|+||+ +++++....    .
T Consensus       201 ~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~  278 (719)
T 1z68_A          201 YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT-YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVS  278 (719)
T ss_dssp             CCSSSSCEEEEEECCBTTSCCCEEEEEEEESS-CHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEE
T ss_pred             cCCCCCccceeecCCCCCCCCCeeEEEEEECC-CCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeE
Confidence                                    78889988 44432001111 11234678889999999998 887775433    2


Q ss_pred             eEEEEE----ccccccccccceee----cccccccCCccceeeeeccee-----EEEEcCCCCEEEE--e-eC--CeEEE
Q 014005          291 FVRLVD----MRQSALCDHSARIL----RDAAESHGSKSFFTEIIASIS-----DIKFANDGQHLLS--R-DY--MNLKV  352 (432)
Q Consensus       291 ~i~iwd----~~~~~~~~~~~~~~----~~h~~~~~~~~~~~~~~~~v~-----~~~~s~dg~~l~s--~-~~--~~i~i  352 (432)
                      .|.+||    +.+++.    ...+    .+|             ...+.     .+.|+|||+.|+.  + .+  ..|++
T Consensus       279 ~l~~~d~~~~~~~g~~----~~~~~~~~~~~-------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~  341 (719)
T 1z68_A          279 VLSICDFREDWQTWDC----PKTQEHIEESR-------------TGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHY  341 (719)
T ss_dssp             EEEEEEECSSSSSEEC----CGGGEEEEECS-------------SSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEE
T ss_pred             EEEEEcccCCCCCCce----EEEEecccccC-------------CceEccccCCccEECCCCCeEEEEEEccCCceEEEE
Confidence            488899    777664    2333    233             45565     7899999996553  3 22  46777


Q ss_pred             Eec
Q 014005          353 FRY  355 (432)
Q Consensus       353 wd~  355 (432)
                      ||+
T Consensus       342 ~~~  344 (719)
T 1z68_A          342 IKD  344 (719)
T ss_dssp             ESS
T ss_pred             EEC
Confidence            777

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=2.1e-17  Score=151.52  Aligned_cols=262  Identities=10%  Similarity=-0.001  Sum_probs=164.6

Q ss_pred             CCCcEEEEEEcCCCCEEEEeccc----ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRG----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      +...+..++|+|+|++|++++.+    +.|.+|+++....                       ..+.+.....+.     
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-----------------------~~~~~~~~~~~~-----   99 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-----------------------TLHLLNTQKTMG-----   99 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-----------------------EEEEEEEEECSS-----
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-----------------------cEEEeeEeccCC-----
Confidence            56677889999999999988875    7999999876310                       011223333333     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEe-CCCeEEEEEccCcc-eeeee---ecCCCCccccccccccccccccccCCCC
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQK-VKKIK---EMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~  181 (432)
                             .....+++    +++++++++ .++.|.+|++.... +....   .......   .........+..++|+|+
T Consensus       100 -------~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~spd  165 (361)
T 3scy_A          100 -------ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGP---DKERQTMPHLHCVRITPD  165 (361)
T ss_dssp             -------SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCS---CTTTCSSCCEEEEEECTT
T ss_pred             -------CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCC---CccccCCCcceEEEECCC
Confidence                   44555555    677777775 57899999997432 22111   1111000   000000123466899999


Q ss_pred             CcceecceeeccceEEEEeeccccc------ceee---EEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCC
Q 014005          182 FAHGYHLEWTENMATKIANVGNSVH------ARCQ---KVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISD  250 (432)
Q Consensus       182 ~~~~~~~~~~~~~~v~i~d~~~~~~------~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~  250 (432)
                      +++++.... .++.+.+|++.....      ....   ..........+..++|+|+|++++++  .++.|.+||++ .+
T Consensus       166 g~~l~~~~~-~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~-~g  243 (361)
T 3scy_A          166 GKYLLADDL-GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA-DG  243 (361)
T ss_dssp             SSEEEEEET-TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE-TT
T ss_pred             CCEEEEEeC-CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec-CC
Confidence            997765432 267899999874321      1111   12223455678899999999987765  68999999998 45


Q ss_pred             ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeC--CCeEEEEEcc--ccccccccceeecccccccCCccceeee
Q 014005          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEI  326 (432)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~i~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~  326 (432)
                      .......+.  ....+......++|+|++ ++|+++..  ++.|.+|++.  +++..  .+..+..              
T Consensus       244 ~~~~~~~~~--~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~~--~~~~~~~--------------  304 (361)
T 3scy_A          244 MLDEIQTVA--ADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTLT--KVGYQLT--------------  304 (361)
T ss_dssp             EEEEEEEEE--SCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCEE--EEEEEEC--------------
T ss_pred             ceEEeEEEe--cCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcEE--EeeEecC--------------
Confidence            432211111  113334557899999999 87766655  4899999996  34420  0122211              


Q ss_pred             ecceeEEEEcCCCCEEEEee-C-CeEEEEec
Q 014005          327 IASISDIKFANDGQHLLSRD-Y-MNLKVFRY  355 (432)
Q Consensus       327 ~~~v~~~~~s~dg~~l~s~~-~-~~i~iwd~  355 (432)
                      ...+..++|+|||++|++++ + +.|.+|++
T Consensus       305 g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          305 GIHPRNFIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             SSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             CCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence            24678899999999988864 4 99999876

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.81  E-value=4.6e-17  Score=148.43  Aligned_cols=213  Identities=11%  Similarity=0.102  Sum_probs=138.7

Q ss_pred             cceeEEEEEEcCCCCEEEEEeC---CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                      ..+..++|  +|+|+ +++++.   ++.|.+|++.++....+.....+.           ..+..++|+|++.+++.+..
T Consensus        40 ~~p~~~a~--spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~-----------~~p~~~a~spdg~~l~~~~~  105 (347)
T 3hfq_A           40 QNPTYLAL--SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG-----------TPPAYVAVDEARQLVYSANY  105 (347)
T ss_dssp             SCCCCEEE--CTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEES-----------CCCSEEEEETTTTEEEEEET
T ss_pred             CCcceEEE--ccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCC-----------CCCEEEEECCCCCEEEEEeC
Confidence            56778999  89998 555543   689999999877655444322222           56778999999998887763


Q ss_pred             eccceEEEEeecccccceeeEEeecC--------CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHA--------HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~  261 (432)
                       .++.+.+|++........+..+...        ....+.+++|+|+|+.+++. .++.|.+||++..+........   
T Consensus       106 -~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~---  181 (347)
T 3hfq_A          106 -HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL---  181 (347)
T ss_dssp             -TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE---
T ss_pred             -CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE---
Confidence             2789999999643233333333111        12358899999999966666 7899999999833332221100   


Q ss_pred             CcCCCCcceEEEEEcCCCCcEEE-EEeCCCeEEEEEccc--cccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005          262 NMDDLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (432)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~iwd~~~--~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d  338 (432)
                      . ......+..++|+|+| ++++ ++..++.|.+|++..  ++..  ....+...+....       ....+..++|+||
T Consensus       182 ~-~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~--~~~~~~~~~~~~~-------~~~~~~~i~~spd  250 (347)
T 3hfq_A          182 T-MEAGFGPRHLVFSPDG-QYAFLAGELSSQIASLKYDTQTGAFT--QLGIVKTIPADYT-------AHNGAAAIRLSHD  250 (347)
T ss_dssp             E-CCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESSCTTCC-------SCCEEEEEEECTT
T ss_pred             E-cCCCCCCceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCceE--EeeeeeecCCCCC-------CCCcceeEEECCC
Confidence            0 1122357889999999 7544 456788999999884  3321  0122222100000       0145888999999


Q ss_pred             CCEEEE-ee-CCeEEEEec
Q 014005          339 GQHLLS-RD-YMNLKVFRY  355 (432)
Q Consensus       339 g~~l~s-~~-~~~i~iwd~  355 (432)
                      |++|+. +. ++.|.+||+
T Consensus       251 G~~l~v~~~~~~~v~v~~~  269 (347)
T 3hfq_A          251 GHFLYVSNRGYNTLAVFAV  269 (347)
T ss_dssp             SCEEEEEEETTTEEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEEE
Confidence            998854 44 499999998

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.81  E-value=7.4e-18  Score=175.65  Aligned_cols=245  Identities=11%  Similarity=0.067  Sum_probs=179.0

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|...+.++.|+++ .++++++.|++++||.++....                          ....+..|.       
T Consensus       200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~--------------------------~~~~l~~~~-------  245 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK--------------------------DLRKHTSFT-------  245 (1045)
T ss_dssp             ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC--------------------------SCEECCCCC-------
T ss_pred             cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC--------------------------cceEecCCC-------
Confidence            467889999999988 6777888889999998864211                          112344443       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCC-CCCcceec
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP-PSFAHGYH  187 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~  187 (432)
                            .+...+|  +|||++++++. ++.|.+|++....+..   +..+..............+..++|+ |++..++.
T Consensus       246 ------~~~~~~~--SpDG~~la~~~-~~~i~~~d~~~~~l~~---l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~  313 (1045)
T 1k32_A          246 ------DYYPRHL--NTDGRRILFSK-GGSIYIFNPDTEKIEK---IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF  313 (1045)
T ss_dssp             ------SSCEEEE--EESSSCEEEEE-TTEEEEECTTTCCEEE---CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE
T ss_pred             ------CcceeeE--cCCCCEEEEEe-CCEEEEecCCceEeee---eccCcccccccccccccccceeeecCCCCCEEEE
Confidence                  3556789  78999888884 8999999995544332   2211000000000112468899999 99999888


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCC-CeeEEEeCCCCCEEEEE-cCCeEE-EEeCCCCCceeeEeecCCCCcC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDF-NINSISNNSDCETFVSA-DDLRIN-LWNLEISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~-~d~~i~-lwd~~~~~~~~~~~~~~~~~~~  264 (432)
                      +.   ++.+.+|+..   .+.... + ..|.. .+..++|+ +|+.++++ .++.+. +||+. .+.. ..+       .
T Consensus       314 ~~---~~~i~~~~~~---~~~~~~-~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~-~~~~-~~l-------~  375 (1045)
T 1k32_A          314 VS---RGQAFIQDVS---GTYVLK-V-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR-TGKA-EKF-------E  375 (1045)
T ss_dssp             EE---TTEEEEECTT---SSBEEE-C-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT-TCCE-EEC-------C
T ss_pred             EE---cCEEEEEcCC---CCceEE-c-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC-CCCc-eEe-------c
Confidence            76   6789999987   333333 3 45666 89999999 99999988 777888 88988 4433 222       4


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      +|...+..++|+|+| +.|++++.++.|++||+.+++.    ...+.+|             ...+..++|||||++|++
T Consensus       376 ~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~----~~~~~~~-------------~~~v~~~~~SpDG~~la~  437 (1045)
T 1k32_A          376 ENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKP----TVIERSR-------------EAMITDFTISDNSRFIAY  437 (1045)
T ss_dssp             CCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE----EEEEECS-------------SSCCCCEEECTTSCEEEE
T ss_pred             CCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCce----EEeccCC-------------CCCccceEECCCCCeEEE
Confidence            677789999999999 9999999999999999998875    3555465             678899999999999987


Q ss_pred             eeC-----------CeEEEEec
Q 014005          345 RDY-----------MNLKVFRY  355 (432)
Q Consensus       345 ~~~-----------~~i~iwd~  355 (432)
                      ++.           +.|++||+
T Consensus       438 ~~~~~~~~~~~~~~~~i~l~d~  459 (1045)
T 1k32_A          438 GFPLKHGETDGYVMQAIHVYDM  459 (1045)
T ss_dssp             EEEECSSTTCSCCEEEEEEEET
T ss_pred             EecCccccccCCCCCeEEEEEC
Confidence            532           49999999

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.79  E-value=3.7e-18  Score=171.41  Aligned_cols=254  Identities=9%  Similarity=0.113  Sum_probs=163.5

Q ss_pred             cEEEEEEcCCCCEEEEeccc---------ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005           34 IVSAIEFDKTGDYLAVGDRG---------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~  104 (432)
                      .|.+++|||||++|++++.+         +.+.+||+++++..                         .+....+|.   
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------------------------~l~~~~~~~---  113 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-------------------------SLDPPEVSN---  113 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-------------------------ECCCTTCCS---
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE-------------------------eccCCcccc---
Confidence            48999999999999998764         78899999887521                         112223344   


Q ss_pred             cccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccc-ccc----ccccccccccccCC
Q 014005          105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS-SEN----TLLAEKNFMNEHNP  179 (432)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~i~~~~~~  179 (432)
                               ..+..++|  +|||++|++++. +.|++||+.+++...+........+. .+.    ....-+.+..++|+
T Consensus       114 ---------~~~~~~~~--SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~S  181 (723)
T 1xfd_A          114 ---------AKLQYAGW--GPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS  181 (723)
T ss_dssp             ---------CCCSBCCB--CSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC
T ss_pred             ---------ccccccEE--CCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEEC
Confidence                     55888999  999999999986 79999999988755443321111000 000    00000133679999


Q ss_pred             CCCcceecceeec--------------------------------cceEEEEeecccccceeeEEeecC------CCCCe
Q 014005          180 PSFAHGYHLEWTE--------------------------------NMATKIANVGNSVHARCQKVYPHA------HDFNI  221 (432)
Q Consensus       180 ~~~~~~~~~~~~~--------------------------------~~~v~i~d~~~~~~~~~~~~~~~~------~~~~i  221 (432)
                      |+++.++.+....                                +..+.+||+.   .+++...+ ..      +...+
T Consensus       182 pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~---~~~~~~~l-~~~~~~~~~~~~~  257 (723)
T 1xfd_A          182 PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN---GPTHDLEM-MPPDDPRMREYYI  257 (723)
T ss_dssp             TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS---SSCCCEEC-CCCCCGGGSSEEE
T ss_pred             CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC---CCceeEEe-eCCccCCCcccee
Confidence            9999888876421                                1278899987   44443444 22      25678


Q ss_pred             eEEEeCCCCCEEEEE-c----CCeEEEEeCCCCCceeeEeecCCCCcCCCCcce----EEEEEcCCCCcEEEE--EeCCC
Q 014005          222 NSISNNSDCETFVSA-D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI----TSAEFHPIYCNLLAY--SSSRG  290 (432)
Q Consensus       222 ~~~~~~~~~~~l~~~-~----d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~p~~~~~l~~--~~~dg  290 (432)
                      ..++|+|||+.+++. .    +..|++||+. +++....+.      ..+...+    ..++|+||| +.|+.  +..++
T Consensus       258 ~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~-~g~~~~~~~------~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~  329 (723)
T 1xfd_A          258 TMVKWATSTKVAVTWLNRAQNVSILTLCDAT-TGVCTKKHE------DESEAWLHRQNEEPVFSKDG-RKFFFIRAIPQG  329 (723)
T ss_dssp             EEEEESSSSEEEEEEEETTSCEEEEEEEETT-TCCEEEEEE------EECSSCCCCCCCCCEECTTS-CSEEEEEEECCS
T ss_pred             EEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC-CCcceEEEE------eccCCEEeccCCCceEcCCC-CeEEEEEecccC
Confidence            999999999988765 3    2579999998 555554431      1222333    378999999 65554  45677


Q ss_pred             ------eEEEEE-cccccc-ccccceeecccccccCCccceeeeecceeE-EEEcCCCCEEEE-eeC---CeEEEEec
Q 014005          291 ------FVRLVD-MRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISD-IKFANDGQHLLS-RDY---MNLKVFRY  355 (432)
Q Consensus       291 ------~i~iwd-~~~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~-~~~s~dg~~l~s-~~~---~~i~iwd~  355 (432)
                            .|.+|| ..++.. +   ...+..+             ...+.. ++|+|||++|+. +.+   +.+++|++
T Consensus       330 ~~~~~~~l~~~d~~~~~~~~~---~~~l~~~-------------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  391 (723)
T 1xfd_A          330 GRGKFYHITVSSSQPNSSNDN---IQSITSG-------------DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA  391 (723)
T ss_dssp             SSSCEEEEEEECSSCCSSSCC---CCBSCCS-------------SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred             CCcceeEEEEEeccCCCCccc---eeEeecC-------------CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence                  567777 343330 0   1233321             233443 699999999875 433   78999998

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=2.7e-17  Score=151.06  Aligned_cols=252  Identities=8%  Similarity=0.014  Sum_probs=162.7

Q ss_pred             CcEEEEEEcCCCCEEEEecccceEEEEEec-CCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETV-GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ..+..++|+|+|++|++++.+ .|.+|+++ +++..                         .......+           
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~-------------------------~~~~~~~~-----------   82 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV-------------------------HEASHPIG-----------   82 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE-------------------------EEEEEECC-----------
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE-------------------------EeeEeecC-----------
Confidence            467889999999999998887 99999997 55421                         00111111           


Q ss_pred             hhcceeEEEEEEcCCCCE--EEEEe-------------CCCeEEEEEcc-Ccceeee-eecCCCCccccccccccccccc
Q 014005          112 IEEKINRVRWCAAPNGSM--FILST-------------NDKTIKLWKVR-DQKVKKI-KEMDHFPFVSSENTLLAEKNFM  174 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~--l~s~~-------------~d~~i~iwd~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~  174 (432)
                        +....++|  +|+|++  ++++.             .++.+.+|++. .++.... ......          ....+.
T Consensus        83 --g~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~----------~~~~~~  148 (365)
T 1jof_A           83 --GHPRANDA--DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQ----------ENTGIH  148 (365)
T ss_dssp             --SSGGGGCT--TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECC----------TTCCEE
T ss_pred             --CCCccEEE--CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeC----------CCCcce
Confidence              12344778  899984  44553             68999999997 3543322 111000          114677


Q ss_pred             cccCCCCCcceecceeeccceEEEEeec-ccccceeeEEeec-CCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCC-C
Q 014005          175 NEHNPPSFAHGYHLEWTENMATKIANVG-NSVHARCQKVYPH-AHDFNINSISNNSDCETFVSA--DDLRINLWNLEI-S  249 (432)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~v~i~d~~-~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~-~  249 (432)
                      .++|+|++++++.... .++.|.+|++. .. ....+..+.. .+...+..++|+|+|++++++  .++.+.+|+++. +
T Consensus       149 ~~~~spdG~~l~~~~~-~~~~v~~~~~~~~g-~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~  226 (365)
T 1jof_A          149 GMVFDPTETYLYSADL-TANKLWTHRKLASG-EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EEEECTTSSEEEEEET-TTTEEEEEEECTTS-CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             EEEECCCCCEEEEEcC-CCCEEEEEEECCCC-CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC
Confidence            8999999998876542 25689999997 22 1222233311 245679999999999988876  578999998762 2


Q ss_pred             Ccee---eEeecCCCCcCCCCc------ceEEEE-EcCCCCcEEEEEeCC-C-----eEEEEEcc-ccccccccce---e
Q 014005          250 DQCF---NIVDMKPSNMDDLTE------VITSAE-FHPIYCNLLAYSSSR-G-----FVRLVDMR-QSALCDHSAR---I  309 (432)
Q Consensus       250 ~~~~---~~~~~~~~~~~~~~~------~v~~~~-~~p~~~~~l~~~~~d-g-----~i~iwd~~-~~~~~~~~~~---~  309 (432)
                      ++..   ..+..-+....++..      .+..++ |+|+| ++|++++.+ +     .|.+|++. +++.    ..   .
T Consensus       227 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~~----~~~~~~  301 (365)
T 1jof_A          227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSI----EKQLFL  301 (365)
T ss_dssp             CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCE----EEEEEE
T ss_pred             CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCCE----EEeeee
Confidence            3321   122111111223333      588999 99999 877766543 2     89999996 4543    12   1


Q ss_pred             ecccccccCCccceeeeecceeEEEEcC---CCCEEEEee-C-CeEEEEec
Q 014005          310 LRDAAESHGSKSFFTEIIASISDIKFAN---DGQHLLSRD-Y-MNLKVFRY  355 (432)
Q Consensus       310 ~~~h~~~~~~~~~~~~~~~~v~~~~~s~---dg~~l~s~~-~-~~i~iwd~  355 (432)
                      ...+             ...+..++|+|   ||++|++++ + +.|.+|++
T Consensus       302 ~~~~-------------~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          302 SPTP-------------TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EECS-------------SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             eecC-------------CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence            2221             23567789999   899999863 4 89999999

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.79  E-value=2.2e-17  Score=165.90  Aligned_cols=246  Identities=13%  Similarity=0.140  Sum_probs=162.2

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      ...++.|+|+|++|+++  |++|++||+.+++..                           ..+.+|...     ..  .
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~---------------------------~~~~~~~~~-----~~--~   61 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS---------------------------VFLENSTFD-----EF--G   61 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE---------------------------EEECTTTTT-----TC--C
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceE---------------------------EEEechhhh-----hh--c
Confidence            45689999999999886  899999999887632                           345555410     00  0


Q ss_pred             cceeEEEEEEcCCCCEEEEEeCC---------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          114 EKINRVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                      .....++|  ||||++++.++.+         +.+.+||+.+++...+..   +.           +.+...+|+|+++.
T Consensus        62 ~~~~~~~~--Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~---~~-----------~~~~~~~~SPdG~~  125 (740)
T 4a5s_A           62 HSINDYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER---IP-----------NNTQWVTWSPVGHK  125 (740)
T ss_dssp             SCCCEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC---CC-----------TTEEEEEECSSTTC
T ss_pred             ccccceEE--CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEccc---CC-----------CcceeeEECCCCCE
Confidence            22345888  9999999999876         566799999988654322   22           56888999999999


Q ss_pred             eecceeeccceEEEEeecccccceeeEEeecCCCCCe-----------------eEEEeCCCCCEEEEE--cCC------
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNI-----------------NSISNNSDCETFVSA--DDL------  239 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i-----------------~~~~~~~~~~~l~~~--~d~------  239 (432)
                      ++.+.   ++.|.+|+..   .+...+....++...+                 ..+.|+|||+.|+.+  +++      
T Consensus       126 la~~~---~~~i~~~~~~---~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~  199 (740)
T 4a5s_A          126 LAYVW---NNDIYVKIEP---NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (740)
T ss_dssp             EEEEE---TTEEEEESST---TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             EEEEE---CCeEEEEECC---CCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEE
Confidence            98774   7899999987   3344333212332222                 358999999999976  333      


Q ss_pred             -----------------------------eEEEEeCCCC---C---ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEE
Q 014005          240 -----------------------------RINLWNLEIS---D---QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (432)
Q Consensus       240 -----------------------------~i~lwd~~~~---~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  284 (432)
                                                   +|++||+. +   +   ....+.  .+..+.++...+..++|+||| +.++
T Consensus       200 ~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~-~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~wspdg-~~~~  275 (740)
T 4a5s_A          200 YSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD-SLSSVTNATSIQIT--APASMLIGDHYLCDVTWATQE-RISL  275 (740)
T ss_dssp             EEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETT-SCCSSSCCCEEEEC--CCHHHHTSCEEEEEEEEEETT-EEEE
T ss_pred             EEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECC-CCCCCCcceEEEec--CCccCCCCCeEEEEEEEeCCC-eEEE
Confidence                                         35666666 3   2   111110  000111377789999999999 7666


Q ss_pred             EEeC----CCeEEEEEcccccc---ccccceee--cccccccCCccceeeeeccee-----EEEEcCCCCEEE-Eee--C
Q 014005          285 YSSS----RGFVRLVDMRQSAL---CDHSARIL--RDAAESHGSKSFFTEIIASIS-----DIKFANDGQHLL-SRD--Y  347 (432)
Q Consensus       285 ~~~~----dg~i~iwd~~~~~~---~~~~~~~~--~~h~~~~~~~~~~~~~~~~v~-----~~~~s~dg~~l~-s~~--~  347 (432)
                      ....    +..|++||+.+++.   |.. ...+  +.|             ..++.     .+.|+|||+.|+ ..+  +
T Consensus       276 ~~~~r~~~~~~i~~~d~~tg~~~~~~~~-~~~l~~~~~-------------~~~v~~~~~~~p~fspDG~~l~~~~s~~~  341 (740)
T 4a5s_A          276 QWLRRIQNYSVMDICDYDESSGRWNCLV-ARQHIEMST-------------TGWVGRFRPSEPHFTLDGNSFYKIISNEE  341 (740)
T ss_dssp             EEEESSTTEEEEEEEEEETTTTEEEECG-GGCEEEECS-------------SSCSSSSSCCCCEECTTSSEEEEEEECTT
T ss_pred             EEeCCCCCEEEEEEEECCCCccccceeE-EEEeeeccC-------------CceEccCcCCCceEcCCCCEEEEEEEcCC
Confidence            5543    33799999998761   111 1222  232             33443     789999999876 432  2


Q ss_pred             --CeEEEEec
Q 014005          348 --MNLKVFRY  355 (432)
Q Consensus       348 --~~i~iwd~  355 (432)
                        ..|++||+
T Consensus       342 G~~~l~~~~~  351 (740)
T 4a5s_A          342 GYRHICYFQI  351 (740)
T ss_dssp             SCEEEEEEET
T ss_pred             CceEEEEEEC
Confidence              57888888

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.75  E-value=1.2e-16  Score=147.92  Aligned_cols=237  Identities=12%  Similarity=0.096  Sum_probs=149.5

Q ss_pred             EEEcCCCCEEEEecc-cc--eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhc
Q 014005           38 IEFDKTGDYLAVGDR-GG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (432)
Q Consensus        38 ~~fsp~g~~l~t~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  114 (432)
                      .+|+|||++|+.++. ++  .|.+||+.+++..                           ....++.            .
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~---------------------------~lt~~~~------------~   81 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT---------------------------QLTEGRG------------D   81 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE---------------------------ECCCSSC------------B
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE---------------------------EeeeCCC------------C
Confidence            789999999988877 66  4777787776522                           2233444            4


Q ss_pred             ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccc--cccCCCCCcceecce---
Q 014005          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM--NEHNPPSFAHGYHLE---  189 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~---  189 (432)
                      .+..+.|  +||++.|+.++.++.|.+||+.+++...+.....             ..+.  ...+++++..++...   
T Consensus        82 ~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~-------------~~~~~~~~~~~~dg~~l~~~~~~~  146 (388)
T 3pe7_A           82 NTFGGFL--SPDDDALFYVKDGRNLMRVDLATLEENVVYQVPA-------------EWVGYGTWVANSDCTKLVGIEIRR  146 (388)
T ss_dssp             CSSSCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT-------------TEEEEEEEEECTTSSEEEEEEEEG
T ss_pred             CccceEE--cCCCCEEEEEeCCCeEEEEECCCCcceeeeechh-------------hcccccceeECCCCCeeccccccC
Confidence            4556789  9999999999999999999999887655543321             1121  122367776665221   


Q ss_pred             -----------------eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cC------CeEEEE
Q 014005          190 -----------------WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DD------LRINLW  244 (432)
Q Consensus       190 -----------------~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d------~~i~lw  244 (432)
                                       ...+..+.+||+.   +++.....  .+...+..++|+| +|+.++.. .+      ..|.++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~---~g~~~~l~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~  221 (388)
T 3pe7_A          147 EDWVPLTDWKKFHEFYFTKPCCRLMRVDLK---TGESTVIL--QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLI  221 (388)
T ss_dssp             GGCCCCCSHHHHHHHGGGCCCEEEEEEETT---TCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEE
T ss_pred             cccccccccchhhhhhccCCcceEEEEECC---CCceEEee--cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEE
Confidence                             1114678889987   44443333  4566789999999 99988876 42      367777


Q ss_pred             eCCCCCceeeEeecCCCCcCCCC--cceEEEEEcCCCCcEEEEEe-CCC----eEEEEEccccccccccceeeccccccc
Q 014005          245 NLEISDQCFNIVDMKPSNMDDLT--EVITSAEFHPIYCNLLAYSS-SRG----FVRLVDMRQSALCDHSARILRDAAESH  317 (432)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~-~dg----~i~iwd~~~~~~~~~~~~~~~~h~~~~  317 (432)
                      |.. .+. ...+       ..+.  ..+..+.|+||| +.|+..+ .++    .|++||+.+++..  .+..+.++    
T Consensus       222 d~~-~~~-~~~l-------~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~--~l~~~~~~----  285 (388)
T 3pe7_A          222 NED-GTN-MRKV-------KTHAEGESCTHEFWVPDG-SALVYVSYLKGSPDRFIYSADPETLENR--QLTSMPAC----  285 (388)
T ss_dssp             ETT-SCC-CEES-------CCCCTTEEEEEEEECTTS-SCEEEEEEETTCCCEEEEEECTTTCCEE--EEEEECCE----
T ss_pred             eCC-CCc-eEEe-------eeCCCCcccccceECCCC-CEEEEEecCCCCCcceEEEEecCCCceE--EEEcCCCc----
Confidence            776 332 2322       2232  357889999999 6565443 222    3999999987641  01222221    


Q ss_pred             CCccceeeeecceeEEEEcCCCCEEEEe----------eCCeEEEEec
Q 014005          318 GSKSFFTEIIASISDIKFANDGQHLLSR----------DYMNLKVFRY  355 (432)
Q Consensus       318 ~~~~~~~~~~~~v~~~~~s~dg~~l~s~----------~~~~i~iwd~  355 (432)
                            .........+.|+|||++|+..          .+..|++||+
T Consensus       286 ------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~  327 (388)
T 3pe7_A          286 ------SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM  327 (388)
T ss_dssp             ------EEEEECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred             ------eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence                  0000112334799999988752          2379999999

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.75  E-value=1.1e-15  Score=135.28  Aligned_cols=258  Identities=15%  Similarity=0.140  Sum_probs=174.4

Q ss_pred             chhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCc
Q 014005           12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY   91 (432)
Q Consensus        12 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   91 (432)
                      ..|.+...|+.+  .....+-....+++++++|+++++...++.|.+||.+....                         
T Consensus        11 ~~~~~~~~~g~~--g~~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~-------------------------   63 (286)
T 1q7f_A           11 QRMIYHCKFGEF--GVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK-------------------------   63 (286)
T ss_dssp             EEECEEEEECCB--SSSTTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE-------------------------
T ss_pred             ceeEEEEeccCC--CCCCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEE-------------------------
Confidence            345555555643  22334556789999999999888888899999999764321                         


Q ss_pred             ceeeeee------cCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeC-CCeEEEEEccCcceeeeeecCCCCccccc
Q 014005           92 RYKTEFQ------SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSE  164 (432)
Q Consensus        92 ~~~~~~~------~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  164 (432)
                         ..+.      ++.            ..+..+++. .+++.++++... ++.|.+||.. ++........ .      
T Consensus        64 ---~~~~~~~~~~~~~------------~~p~~i~~~-~~~g~l~v~~~~~~~~i~~~d~~-g~~~~~~~~~-~------  119 (286)
T 1q7f_A           64 ---FQFGECGKRDSQL------------LYPNRVAVV-RNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGAT-I------  119 (286)
T ss_dssp             ---EEECCBSSSTTCB------------SSEEEEEEE-TTTTEEEEEECGGGCEEEEECTT-SCEEEEECTT-T------
T ss_pred             ---EEecccCCCcccc------------cCceEEEEE-cCCCeEEEEcCCCCCEEEEECCC-CcEEEEecCc-c------
Confidence               1221      222            467788883 256665555533 7899999944 4422221111 1      


Q ss_pred             cccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-cCCeEE
Q 014005          165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRIN  242 (432)
Q Consensus       165 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~d~~i~  242 (432)
                           ...+..+++++++...++...  ++.|.+|+..    ++....+. ..+...+..++++++++++++. .++.|+
T Consensus       120 -----~~~~~~i~~~~~g~l~v~~~~--~~~i~~~~~~----g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~  188 (286)
T 1q7f_A          120 -----LQHPRGVTVDNKGRIIVVECK--VMRVIIFDQN----GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK  188 (286)
T ss_dssp             -----CSCEEEEEECTTSCEEEEETT--TTEEEEECTT----SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred             -----CCCceEEEEeCCCCEEEEECC--CCEEEEEcCC----CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEE
Confidence                 135678889999876665544  6789999864    33444441 1345678999999999877777 799999


Q ss_pred             EEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC-eEEEEEccccccccccceeecccccccCCcc
Q 014005          243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-FVRLVDMRQSALCDHSARILRDAAESHGSKS  321 (432)
Q Consensus       243 lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~  321 (432)
                      +||..  +..+..+     ...++...+..++++|++ +++++...++ .|.+||.. ++.    +..+..+.       
T Consensus       189 ~~~~~--g~~~~~~-----~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~-g~~----~~~~~~~~-------  248 (286)
T 1q7f_A          189 VFNYE--GQYLRQI-----GGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQD-GQL----ISALESKV-------  248 (286)
T ss_dssp             EEETT--CCEEEEE-----SCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTT-SCE----EEEEEESS-------
T ss_pred             EEcCC--CCEEEEE-----ccCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCC-CCE----EEEEcccC-------
Confidence            99986  4445444     112333568999999999 8888887776 99999964 443    35554420       


Q ss_pred             ceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          322 FFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       322 ~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                          ....+.+++++|+|+++++..+++|++|++
T Consensus       249 ----~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~  278 (286)
T 1q7f_A          249 ----KHAQCFDVALMDDGSVVLASKDYRLYIYRY  278 (286)
T ss_dssp             ----CCSCEEEEEEETTTEEEEEETTTEEEEEEC
T ss_pred             ----CCCcceeEEECCCCcEEEECCCCeEEEEEc
Confidence                023477899999999888865699999998

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.74  E-value=6.7e-16  Score=139.57  Aligned_cols=246  Identities=8%  Similarity=0.028  Sum_probs=167.0

Q ss_pred             CcEEEEEEcCCCCEEEEecccc------------------------eEEEEEecCCcCCCCccccchhhhcccccccccc
Q 014005           33 DIVSAIEFDKTGDYLAVGDRGG------------------------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSH   88 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~t~~~dg------------------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (432)
                      +.+.+++++|+|+++++...++                        +|.+||.++++.                      
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~----------------------   81 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI----------------------   81 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE----------------------
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE----------------------
Confidence            3799999999999998887773                        577777765542                      


Q ss_pred             CCcceeeeee-cCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--eeeeeecCCCCcccccc
Q 014005           89 PEYRYKTEFQ-SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VKKIKEMDHFPFVSSEN  165 (432)
Q Consensus        89 p~~~~~~~~~-~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~  165 (432)
                           ...+. ++-            .....+++  +++|+++++...++.|++||.....  ...+.......     .
T Consensus        82 -----~~~~~~~~~------------~~p~gia~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g-----~  137 (329)
T 3fvz_A           82 -----LQSSGKNLF------------YLPHGLSI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG-----S  137 (329)
T ss_dssp             -----EEEECTTTC------------SSEEEEEE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC-----C
T ss_pred             -----EeccCCCcc------------CCceEEEE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC-----C
Confidence                 12222 222            56789999  8999988888889999999986552  22221100000     0


Q ss_pred             ccccccccccccCCC-CCcceecce-eeccceEEEEeecccccceeeEEeec---------CCCCCeeEEEeCCC-CCEE
Q 014005          166 TLLAEKNFMNEHNPP-SFAHGYHLE-WTENMATKIANVGNSVHARCQKVYPH---------AHDFNINSISNNSD-CETF  233 (432)
Q Consensus       166 ~~~~~~~i~~~~~~~-~~~~~~~~~-~~~~~~v~i~d~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~-~~~l  233 (432)
                      ....-.....+++++ ++..+++.. .  ++.|++|+.    .+..+..+..         ++......++++|+ +.++
T Consensus       138 ~~~~~~~P~~ia~~~~~g~lyv~d~~~--~~~I~~~~~----~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~  211 (329)
T 3fvz_A          138 DQNHFCQPTDVAVEPSTGAVFVSDGYC--NSRIVQFSP----SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLC  211 (329)
T ss_dssp             STTCCSSEEEEEECTTTCCEEEEECSS--CCEEEEECT----TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEE
T ss_pred             CccccCCCcEEEEeCCCCeEEEEeCCC--CCeEEEEcC----CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEE
Confidence            000013466789998 666666653 4  778999984    3445555411         12234889999998 6666


Q ss_pred             EEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe-------CCCeEEEEEccccccccc
Q 014005          234 VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-------SRGFVRLVDMRQSALCDH  305 (432)
Q Consensus       234 ~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~  305 (432)
                      ++. .++.|++||.+ +++.+..+     ....+...+..++|+| + ..+++.+       .+..|++||..+++.   
T Consensus       212 v~d~~~~~I~~~~~~-~G~~~~~~-----~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~---  280 (329)
T 3fvz_A          212 VADRENGRIQCFKTD-TKEFVREI-----KHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEI---  280 (329)
T ss_dssp             EEETTTTEEEEEETT-TCCEEEEE-----CCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCE---
T ss_pred             EEECCCCEEEEEECC-CCcEEEEE-----eccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeE---
Confidence            666 89999999998 66666665     1234556788999999 4 4444443       345899999998876   


Q ss_pred             cceeec---ccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005          306 SARILR---DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       306 ~~~~~~---~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~  355 (432)
                       +..+.   .|             ...+.+++++|+|.++++.. +++|++|++
T Consensus       281 -~~~~~~~~~~-------------~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          281 -IDVFKPVRKH-------------FDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             -EEEECCSSSC-------------CSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             -EEEEcCCCCc-------------cCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence             45553   32             46788999999997777754 499999998

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.74  E-value=5.1e-15  Score=135.64  Aligned_cols=212  Identities=8%  Similarity=0.035  Sum_probs=132.9

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCC----CeEEEEEccC--cceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          114 EKINRVRWCAAPNGSMFILSTND----KTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d----~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                      .....++|  +|++++|++++.+    +.|.+|++..  +++..+.......           .....+++  ++.+++.
T Consensus        50 ~~p~~l~~--spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~-----------~~p~~~~~--dg~~l~~  114 (361)
T 3scy_A           50 ANPSYLIP--SADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG-----------ADPCYLTT--NGKNIVT  114 (361)
T ss_dssp             SCCCSEEE--CTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS-----------SCEEEEEE--CSSEEEE
T ss_pred             CCCceEEE--CCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC-----------CCcEEEEE--CCCEEEE
Confidence            66778999  9999999999875    7999999875  5544443332211           23344555  6666665


Q ss_pred             ceeeccceEEEEeecccccc-eeeEEee-c--------CCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCc----
Q 014005          188 LEWTENMATKIANVGNSVHA-RCQKVYP-H--------AHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQ----  251 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~-~~~~~~~-~--------~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~----  251 (432)
                      ... .++.+.+|++...... ....... .        .+...+.+++|+|+|++++++  .++.+.+|+++....    
T Consensus       115 ~~~-~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~  193 (361)
T 3scy_A          115 ANY-SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNK  193 (361)
T ss_dssp             EET-TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred             EEC-CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccc
Confidence            442 2789999998742111 1111110 1        122346889999999977655  689999999883331    


Q ss_pred             e-eeEe-ecCCCCcCCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeecccccccCCccceeeeec
Q 014005          252 C-FNIV-DMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (432)
Q Consensus       252 ~-~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  328 (432)
                      . +... ... .........++.++|+|++ +++++++ .++.|.+||+.+++...  +..+...   +       .+..
T Consensus       194 ~~l~~~~~~~-~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~~---~-------~~~~  259 (361)
T 3scy_A          194 EKFLTKGTPE-AFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE--IQTVAAD---T-------VNAQ  259 (361)
T ss_dssp             CCCEEEEEEE-EEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE--EEEEESC---S-------SCCC
T ss_pred             cceeeccccc-ceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE--eEEEecC---C-------CCCC
Confidence            1 1100 000 0012334557899999999 7776666 68999999998765310  1222111   0       0123


Q ss_pred             ceeEEEEcCCCCEEEEe--e-CCeEEEEec
Q 014005          329 SISDIKFANDGQHLLSR--D-YMNLKVFRY  355 (432)
Q Consensus       329 ~v~~~~~s~dg~~l~s~--~-~~~i~iwd~  355 (432)
                      ....++|+|||++|+++  . ++.|.+|++
T Consensus       260 ~~~~i~~spdg~~l~v~~~~~~~~i~v~~~  289 (361)
T 3scy_A          260 GSGDIHLSPDGKYLYASNRLKADGVAIFKV  289 (361)
T ss_dssp             CEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred             CcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence            46799999999988653  3 489999999

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.73  E-value=2.2e-16  Score=154.32  Aligned_cols=230  Identities=9%  Similarity=0.058  Sum_probs=159.5

Q ss_pred             cCC-CcEEEEEEcCCCCEEEEecc---cceEEEEEecC--CcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005           30 QDV-DIVSAIEFDKTGDYLAVGDR---GGRVILFETVG--GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (432)
Q Consensus        30 ~h~-~~V~~~~fsp~g~~l~t~~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~  103 (432)
                      .|. ..+.++.|+|+ +++++++.   +...+||.++.  ....                           ..+...   
T Consensus        61 ~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~---------------------------~~l~~~---  109 (582)
T 3o4h_A           61 REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE---------------------------QRLEAV---  109 (582)
T ss_dssp             SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC---------------------------EECTTS---
T ss_pred             cccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcc---------------------------ccccCC---
Confidence            344 58999999999 77777665   45677877654  2211                           112111   


Q ss_pred             ccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (432)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  183 (432)
                                ..+...+|+|++++..+++++.+ .+.+||+.+++...+....              .  ..++|+|+++
T Consensus       110 ----------~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~--------------~--~~~~~spDG~  162 (582)
T 3o4h_A          110 ----------KPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLP--------------G--FGFVSDIRGD  162 (582)
T ss_dssp             ----------CSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEES--------------S--CEEEEEEETT
T ss_pred             ----------CCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCC--------------C--ceEEECCCCC
Confidence                      22345677433333345555544 4559999988766554321              1  6788999999


Q ss_pred             ceecceeec--cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC--eEEEEeCCCCCceeeEeec
Q 014005          184 HGYHLEWTE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDM  258 (432)
Q Consensus       184 ~~~~~~~~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~--~i~lwd~~~~~~~~~~~~~  258 (432)
                      +++.++...  ...+.+||+.   .++.. .+ ..+...+..++|+|||+.|+++ .++  .|++||++ +++.. .+  
T Consensus       163 ~la~~~~~~~~~~~i~~~d~~---~g~~~-~l-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~-~~~~~-~~--  233 (582)
T 3o4h_A          163 LIAGLGFFGGGRVSLFTSNLS---SGGLR-VF-DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPR-DGSVE-DL--  233 (582)
T ss_dssp             EEEEEEEEETTEEEEEEEETT---TCCCE-EE-CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTT-TCCEE-EC--
T ss_pred             EEEEEEEcCCCCeEEEEEcCC---CCCce-Ee-ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCC-CCcEE-Ec--
Confidence            999777632  1679999987   34433 44 5778889999999999999977 788  89999998 45444 43  


Q ss_pred             CCCCcCCCCcceEEEE--------EcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecce
Q 014005          259 KPSNMDDLTEVITSAE--------FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI  330 (432)
Q Consensus       259 ~~~~~~~~~~~v~~~~--------~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v  330 (432)
                           ..|...+..+.        |+||| .++++++.|+.+++|++  ++.    ....                ...+
T Consensus       234 -----~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~----~~~~----------------~~~v  285 (582)
T 3o4h_A          234 -----ELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GER----VEAP----------------QGNH  285 (582)
T ss_dssp             -----CCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEE----ECCC----------------SSEE
T ss_pred             -----cCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCe----eccC----------------CCce
Confidence                 55665566666        99999 99999999999999999  543    2211                3568


Q ss_pred             eEEEEcCCCCEEEEe-eC---CeEEEEec
Q 014005          331 SDIKFANDGQHLLSR-DY---MNLKVFRY  355 (432)
Q Consensus       331 ~~~~~s~dg~~l~s~-~~---~~i~iwd~  355 (432)
                      .+++|+ ||++++++ ++   ..+++||.
T Consensus       286 ~~~~~s-dg~~l~~~s~~~~p~~l~~~d~  313 (582)
T 3o4h_A          286 GRVVLW-RGKLVTSHTSLSTPPRIVSLPS  313 (582)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             EEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence            899999 99988874 44   45777776

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.72  E-value=1.1e-15  Score=138.19  Aligned_cols=208  Identities=11%  Similarity=0.057  Sum_probs=139.1

Q ss_pred             cEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeec-CCccccccchhh
Q 014005           34 IVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLE  111 (432)
Q Consensus        34 ~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-h~~~~~~~~~~~  111 (432)
                      .+.+++|+|+|+++ +++..++.|.+||+.+++..                           ..+.. +..        .
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---------------------------~~~~~~~~~--------~   79 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL---------------------------GRIDLSTPE--------E   79 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE---------------------------EEEECCBTT--------E
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE---------------------------eeEEcCCcc--------c
Confidence            47889999999865 55666889999999876532                           22221 100        0


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEe------------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCC
Q 014005          112 IEEKINRVRWCAAPNGSMFILST------------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  179 (432)
                      ....+..++|  +|+++++++++            .++.|.+||+.+++........              ..+..++|+
T Consensus        80 ~~~~~~~~~~--s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--------------~~~~~~~~s  143 (337)
T 1pby_B           80 RVKSLFGAAL--SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--------------RQITMLAWA  143 (337)
T ss_dssp             EEECTTCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--------------SSCCCEEEC
T ss_pred             ccccccceEE--CCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--------------CCcceeEEC
Confidence            0035678999  89999988886            5799999999887644332221              234555666


Q ss_pred             CCCcceecceeeccceEEEEeecccc------------------------------------------------------
Q 014005          180 PSFAHGYHLEWTENMATKIANVGNSV------------------------------------------------------  205 (432)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~i~d~~~~~------------------------------------------------------  205 (432)
                      |++.+++.+    ++.+.+||+....                                                      
T Consensus       144 ~dg~~l~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (337)
T 1pby_B          144 RDGSKLYGL----GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRT  219 (337)
T ss_dssp             TTSSCEEEE----SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEE
T ss_pred             CCCCEEEEe----CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccccc
Confidence            666655444    2345555543110                                                      


Q ss_pred             --------cceee-EEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEc
Q 014005          206 --------HARCQ-KVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  276 (432)
Q Consensus       206 --------~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  276 (432)
                              ..+.. ..+ ..+...+.+++|+|++++++++ ++.|.+||++ +++....+       . ....+.+++|+
T Consensus       220 ~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~-~~~~~~~~-------~-~~~~~~~~~~s  288 (337)
T 1pby_B          220 GLLTMDLETGEMAMREV-RIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLE-KNASIKRV-------P-LPHSYYSVNVS  288 (337)
T ss_dssp             EEEEEETTTCCEEEEEE-EECSSCEEEEEECTTSSEEEEE-ESEEEEEETT-TTEEEEEE-------E-CSSCCCEEEEC
T ss_pred             ceEEEeCCCCCceEeec-CCCCCceeeEEECCCCCEEEEe-CCeEEEEECC-CCcCccee-------c-CCCceeeEEEC
Confidence                    11111 111 2233456779999999999888 8999999998 56665554       2 12357889999


Q ss_pred             CCCCcEEEEEeCCCeEEEEEccccccccccceeecc
Q 014005          277 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  312 (432)
Q Consensus       277 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (432)
                      |++ ++|++++.++.|.+||+.+++.    +..+..
T Consensus       289 ~dg-~~l~~~~~~~~i~v~d~~~~~~----~~~~~~  319 (337)
T 1pby_B          289 TDG-STVWLGGALGDLAAYDAETLEK----KGQVDL  319 (337)
T ss_dssp             TTS-CEEEEESBSSEEEEEETTTCCE----EEEEEC
T ss_pred             CCC-CEEEEEcCCCcEEEEECcCCcE----EEEEEc
Confidence            999 8888889999999999998876    455544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.72  E-value=4.2e-14  Score=129.73  Aligned_cols=216  Identities=8%  Similarity=-0.011  Sum_probs=137.2

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEcc-CcceeeeeecCCCCccccccccccccccccccCCCCCcc--eecce-
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH--GYHLE-  189 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~-  189 (432)
                      ..+..++|  +|++++|++++.+ .|.+|++. ++++.........            +....++++|++++  ++.+. 
T Consensus        40 ~~~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~------------g~~~~~~~spdg~~l~~~~~~~  104 (365)
T 1jof_A           40 EPISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG------------GHPRANDADTNTRAIFLLAAKQ  104 (365)
T ss_dssp             CCCSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC------------SSGGGGCTTSCCEEEEEEECSS
T ss_pred             CCCcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC------------CCCccEEECCCCCEEEEEEecC
Confidence            46778999  9999999999887 99999997 6665433222110            23566899999994  44443 


Q ss_pred             -----ee-----ccceEEEEeeccc-ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEe
Q 014005          190 -----WT-----ENMATKIANVGNS-VHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV  256 (432)
Q Consensus       190 -----~~-----~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~  256 (432)
                           ..     .++.+.+|++... .....+..+...+...+.+++|+|+|++++++  .++.|++||++.+++.....
T Consensus       105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~  184 (365)
T 1jof_A          105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG  184 (365)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred             CcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEee
Confidence                 11     3788999999732 11112222212356689999999999988876  57899999997223322111


Q ss_pred             ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeC-CCeEEEEEcc--ccccccccceeecccccccCCccceeeeec-----
Q 014005          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIA-----  328 (432)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~-----  328 (432)
                      .+   ....+...++.++|+|+| +++++++. ++.|.+|++.  +++.... ...+...+.   .   +.++..     
T Consensus       185 ~~---~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~-~~~~~~~~~---~---~~g~~~~~~~~  253 (365)
T 1jof_A          185 SV---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYT-HHSFPLIPP---G---IPDRDPETGKG  253 (365)
T ss_dssp             EE---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEE-EEEEESSCT---T---CCCBCTTTSSB
T ss_pred             eE---ecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEc-cceEEcCCC---C---cCCcccccccc
Confidence            00   111235668999999999 88877764 7899999875  4442100 011111000   0   000111     


Q ss_pred             -ceeEEE-EcCCCCEEEEee--CC-----eEEEEec
Q 014005          329 -SISDIK-FANDGQHLLSRD--YM-----NLKVFRY  355 (432)
Q Consensus       329 -~v~~~~-~s~dg~~l~s~~--~~-----~i~iwd~  355 (432)
                       .+..++ |+|||++|++++  .+     .|.+|++
T Consensus       254 ~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~  289 (365)
T 1jof_A          254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL  289 (365)
T ss_dssp             SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred             cccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence             578999 999999887643  23     8999998

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.71  E-value=2.7e-15  Score=148.98  Aligned_cols=257  Identities=9%  Similarity=0.031  Sum_probs=163.4

Q ss_pred             cCCCcEEEEEEcCCCCEEEEe--cccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           30 QDVDIVSAIEFDKTGDYLAVG--DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      .|...|..++|++++-+++..  +.++...||....+..                           ...+..|.      
T Consensus        21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------~~~l~~~~------   67 (662)
T 3azo_A           21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA---------------------------EESALPAP------   67 (662)
T ss_dssp             HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC---------------------------EEESSCTT------
T ss_pred             hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC---------------------------cceeCCCC------
Confidence            467899999999887777776  6688999999743321                           12333443      


Q ss_pred             chhhhhccee---------EEEEEEcCCCCE-EEEEeC-CCeEEEEEcc--C-cceeeeeecCC--CCcccccccccccc
Q 014005          108 KSLEIEEKIN---------RVRWCAAPNGSM-FILSTN-DKTIKLWKVR--D-QKVKKIKEMDH--FPFVSSENTLLAEK  171 (432)
Q Consensus       108 ~~~~~~~~v~---------~l~~~~s~~~~~-l~s~~~-d~~i~iwd~~--~-~~~~~~~~~~~--~~~~~~~~~~~~~~  171 (432)
                            ..+.         ...|..||||+. |+.++. +..|.++++.  + +....+.....  +.           .
T Consensus        68 ------~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~-----------~  130 (662)
T 3azo_A           68 ------WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGG-----------L  130 (662)
T ss_dssp             ------CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTC-----------E
T ss_pred             ------ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCC-----------c
Confidence                  2233         455632489998 776653 5667777766  3 44333322110  12           4


Q ss_pred             ccccccCCCCCcceecceeec--------cceEEEEeecccc--c-ceeeEEeec-CCCCCeeEEEeCCCCCEEEEE-cC
Q 014005          172 NFMNEHNPPSFAHGYHLEWTE--------NMATKIANVGNSV--H-ARCQKVYPH-AHDFNINSISNNSDCETFVSA-DD  238 (432)
Q Consensus       172 ~i~~~~~~~~~~~~~~~~~~~--------~~~v~i~d~~~~~--~-~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~-~d  238 (432)
                      .+..++|+|+++.++......        ...|.+||+....  . +.. +.+ . .+...+..++|+|||+.|+.+ .+
T Consensus       131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l-~~~~~~~~~~~~~SpDG~~la~~~~~  208 (662)
T 3azo_A          131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-REL-SDDAHRFVTGPRLSPDGRQAVWLAWD  208 (662)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EES-SCSCSSEECCCEECTTSSEEEEEEEC
T ss_pred             cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEE-EecCCCcccCceECCCCCEEEEEECC
Confidence            677899999999998877621        1588999987410  0 232 333 3 455678889999999999876 44


Q ss_pred             --------CeEEEEeCCCCC---ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC--eEEEEEccccccccc
Q 014005          239 --------LRINLWNLEISD---QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQSALCDH  305 (432)
Q Consensus       239 --------~~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~  305 (432)
                              ..|++||++.++   ....+.       ..+...+..+.|+||| +++++++.++  .|.+||+.+++.   
T Consensus       209 ~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-------~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~---  277 (662)
T 3azo_A          209 HPRMPWEGTELKTARVTEDGRFADTRTLL-------GGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGAA---  277 (662)
T ss_dssp             TTCCTTTCEEEEEEEECTTSCEEEEEEEE-------EETTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCCE---
T ss_pred             CCCCCCCCcEEEEEEECCCCcccccEEeC-------CCCCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCce---
Confidence                    379999998323   333322       3456789999999999 7888888888  666667655553   


Q ss_pred             cceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          306 SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       306 ~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                       ......+ .....    ......+..++|+|++++++++..+.++||.+
T Consensus       278 -~~l~~~~-~~~~~----p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  321 (662)
T 3azo_A          278 -TQLCRRE-EEFAG----PLWTPGMRWFAPLANGLIAVVHGKGAAVLGIL  321 (662)
T ss_dssp             -EESSCCS-SBSSC----CCCSTTCCSEEECTTSCEEEEEBSSSCEEEEE
T ss_pred             -eeccccc-ccccC----ccccccCceEeEeCCCEEEEEEEcCccEEEEE
Confidence             1222221 00000    00011256789999999998874488888844

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.70  E-value=2.2e-16  Score=158.31  Aligned_cols=249  Identities=10%  Similarity=0.067  Sum_probs=158.9

Q ss_pred             EEEEEEcCCCCEEEEecc---------cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           35 VSAIEFDKTGDYLAVGDR---------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        35 V~~~~fsp~g~~l~t~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      |.+++|||||++||+++.         ++.|++||+++++....                         ..+   .    
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-------------------------~~l---~----  109 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-------------------------NEL---P----  109 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-------------------------SCC---C----
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-------------------------eec---C----
Confidence            889999999999998876         78999999988753100                         011   1    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCc-cc-cccccc----cccccccccCC
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF-VS-SENTLL----AEKNFMNEHNP  179 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~-~~~~~~----~~~~i~~~~~~  179 (432)
                              ..+..++|  +|||+.|+++. ++.|++|++.+++...+... .+.. +. ......    ..+....++|+
T Consensus       110 --------~~~~~~~~--SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~-~~~~~v~~g~~~~v~~ee~~~~~~~~~wS  177 (719)
T 1z68_A          110 --------RPIQYLCW--SPVGSKLAYVY-QNNIYLKQRPGDPPFQITFN-GRENKIFNGIPDWVYEEEMLATKYALWWS  177 (719)
T ss_dssp             --------SSBCCEEE--CSSTTCEEEEE-TTEEEEESSTTSCCEECCCC-CBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred             --------cccccceE--CCCCCEEEEEE-CCeEEEEeCCCCCcEEEecC-CCcCCeEcccccceeeeecccCcccEEEC
Confidence                    45788999  99999999986 78999999988775443211 1110 00 000000    00122579999


Q ss_pred             CCCcceecceeec--------------------------------cceEEEEeecccccceee---EE-----eecCCCC
Q 014005          180 PSFAHGYHLEWTE--------------------------------NMATKIANVGNSVHARCQ---KV-----YPHAHDF  219 (432)
Q Consensus       180 ~~~~~~~~~~~~~--------------------------------~~~v~i~d~~~~~~~~~~---~~-----~~~~~~~  219 (432)
                      |+++.++.++...                                ...+.+||+..   ++..   ..     + .+|..
T Consensus       178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~---~~~~~~~~~~~~~~~-~~~~~  253 (719)
T 1z68_A          178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY---PAYVGPQEVPVPAMI-ASSDY  253 (719)
T ss_dssp             TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC---HHHHCCEECCCCHHH-HTSCE
T ss_pred             CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC---CCccceeEccCCccC-CCCcc
Confidence            9999998877521                                12788999873   3321   11     2 35777


Q ss_pred             CeeEEEeCCCCCEEEEE-cC----CeEEEEe----CCCCCceeeEeecCCCCcCCCCcceE-----EEEEcCCCCcEEE-
Q 014005          220 NINSISNNSDCETFVSA-DD----LRINLWN----LEISDQCFNIVDMKPSNMDDLTEVIT-----SAEFHPIYCNLLA-  284 (432)
Q Consensus       220 ~i~~~~~~~~~~~l~~~-~d----~~i~lwd----~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~p~~~~~l~-  284 (432)
                      .+.+++|+||++++++. ..    ..|.+||    .+ +++...++.   .....|...+.     .+.|+|+| +.|+ 
T Consensus       254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~-~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~spdg-~~l~~  328 (719)
T 1z68_A          254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ-TWDCPKTQE---HIEESRTGWAGGFFVSTPVFSYDA-ISYYK  328 (719)
T ss_dssp             EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS-SEECCGGGE---EEEECSSSCSSSSSCCCCEECTTS-SCEEE
T ss_pred             eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC-CCceEEEEe---cccccCCceEccccCCccEECCCC-CeEEE
Confidence            89999999998777764 32    2488899    66 444333210   00024555555     78999999 6443 


Q ss_pred             -EEeCCC--eEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE-eeC-----CeEEEEec
Q 014005          285 -YSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY-----MNLKVFRY  355 (432)
Q Consensus       285 -~~~~dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~-----~~i~iwd~  355 (432)
                       ++..+|  .|.+||+.+++.     ..+..+             ...+..+.++ +|+.|+. +.+     +..++|.+
T Consensus       329 ~~~~~~g~~~l~~~~~~~~~~-----~~lt~~-------------~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~  389 (719)
T 1z68_A          329 IFSDKDGYKHIHYIKDTVENA-----IQITSG-------------KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRI  389 (719)
T ss_dssp             EEECTTSCEEEEEESSCSTTC-----EECSCS-------------SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred             EEEccCCceEEEEEECCCCce-----EecccC-------------ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEE
Confidence             344555  577777766552     445443             3456777777 7776665 432     78899988

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.68  E-value=3.3e-15  Score=135.93  Aligned_cols=203  Identities=10%  Similarity=0.052  Sum_probs=139.7

Q ss_pred             cEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCC-ccccccchhh
Q 014005           34 IVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHE-PEFDYLKSLE  111 (432)
Q Consensus        34 ~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~-~~~~~~~~~~  111 (432)
                      .+..++|+|+|+++ +++..++.|.+||+.+++..                           ..+.... +.       .
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~---------------------------~~~~~~~~~~-------~   89 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT---------------------------FHANLSSVPG-------E   89 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE---------------------------EEEESCCSTT-------E
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE---------------------------EEEEcccccc-------c
Confidence            57789999999865 45567899999999876532                           2222111 00       0


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCC------------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCC
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTND------------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  179 (432)
                      ....+..++|  +|+|+++++++.+            +.|.+||+.+++..........+           ..+.+++|+
T Consensus        90 ~~~~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----------~~~~~~~~s  156 (349)
T 1jmx_B           90 VGRSMYSFAI--SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-----------RQVYLMRAA  156 (349)
T ss_dssp             EEECSSCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-----------SSCCCEEEC
T ss_pred             ccccccceEE--CCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-----------CcccceeEC
Confidence            0034778999  8999999998865            89999999876532211111111           357788899


Q ss_pred             CCCcceecceeeccceEEEEeecccccceeeEEeecC-------------------------------------------
Q 014005          180 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHA-------------------------------------------  216 (432)
Q Consensus       180 ~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~-------------------------------------------  216 (432)
                      |++. ++.+    ++.+.+||..   +++....+..+                                           
T Consensus       157 ~dg~-l~~~----~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  228 (349)
T 1jmx_B          157 DDGS-LYVA----GPDIYKMDVK---TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT  228 (349)
T ss_dssp             TTSC-EEEE----SSSEEEECTT---TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred             CCCc-EEEc----cCcEEEEeCC---CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence            9998 5443    3458889886   33333333111                                           


Q ss_pred             ------------------------CCCCeeEEEeCC-CCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005          217 ------------------------HDFNINSISNNS-DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (432)
Q Consensus       217 ------------------------~~~~i~~~~~~~-~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (432)
                                              +...+..++++| ++++++++ ++.|.+||++ +++....+       . ....+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~-~~~~~~~~-------~-~~~~~~  298 (349)
T 1jmx_B          229 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLK-QRKLIKAA-------N-LDHTYY  298 (349)
T ss_dssp             CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETT-TTEEEEEE-------E-CSSCCC
T ss_pred             cccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECc-cCeEEEEE-------c-CCCCcc
Confidence                                    112456778889 99999988 8999999999 56665554       1 123467


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       272 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      +++|+|++ +.|++++.++.|.+||+.+++.
T Consensus       299 ~~~~s~dg-~~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          299 CVAFDKKG-DKLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             EEEECSSS-SCEEEESBSSEEEEEETTTTEE
T ss_pred             ceEECCCC-CEEEEecCCCeEEEEeccccce
Confidence            89999999 7777788899999999998775

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.68  E-value=9.7e-16  Score=141.81  Aligned_cols=250  Identities=9%  Similarity=-0.005  Sum_probs=153.0

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      .+..+.|+|+|+.|+.++.++.|++||+.+++..                           ..+..+.            
T Consensus        82 ~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~---------------------------~~~~~~~------------  122 (388)
T 3pe7_A           82 NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEEN---------------------------VVYQVPA------------  122 (388)
T ss_dssp             CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEE---------------------------EEEECCT------------
T ss_pred             CccceEEcCCCCEEEEEeCCCeEEEEECCCCcce---------------------------eeeechh------------
Confidence            4446789999999999999999999999887532                           2233333            


Q ss_pred             cceeEEEEEEcCCCCEEEEE----------------------eCCCeEEEEEccCcceeeeeecCCCCcccccccccccc
Q 014005          114 EKINRVRWCAAPNGSMFILS----------------------TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK  171 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~----------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (432)
                      ..+....|..++++.+++..                      ..+..|.+||+.+++...+....              .
T Consensus       123 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--------------~  188 (388)
T 3pe7_A          123 EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN--------------Q  188 (388)
T ss_dssp             TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES--------------S
T ss_pred             hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC--------------c
Confidence            44444444447899887742                      24478999999988766554322              4


Q ss_pred             ccccccCCC-CCcceecceeec----cceEEEEeecccccceeeEEeecCCC--CCeeEEEeCCCCCEEEEE--cCC---
Q 014005          172 NFMNEHNPP-SFAHGYHLEWTE----NMATKIANVGNSVHARCQKVYPHAHD--FNINSISNNSDCETFVSA--DDL---  239 (432)
Q Consensus       172 ~i~~~~~~~-~~~~~~~~~~~~----~~~v~i~d~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~--~d~---  239 (432)
                      .+..+.|+| ++..++......    ...+.++|..   ... .+.+ ..+.  ..+...+|+|+|+.|+..  .++   
T Consensus       189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~---~~~-~~~l-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  263 (388)
T 3pe7_A          189 WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED---GTN-MRKV-KTHAEGESCTHEFWVPDGSALVYVSYLKGSPD  263 (388)
T ss_dssp             CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT---SCC-CEES-CCCCTTEEEEEEEECTTSSCEEEEEEETTCCC
T ss_pred             cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC---CCc-eEEe-eeCCCCcccccceECCCCCEEEEEecCCCCCc
Confidence            567889999 998887665422    2256666654   222 2333 2233  357788999999977653  322   


Q ss_pred             -eEEEEeCCCCCceeeEeecCCCCcCCCCcc---eEEEEEcCCCCcEEEEE---------eCCCeEEEEEcccccccccc
Q 014005          240 -RINLWNLEISDQCFNIVDMKPSNMDDLTEV---ITSAEFHPIYCNLLAYS---------SSRGFVRLVDMRQSALCDHS  306 (432)
Q Consensus       240 -~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~p~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~  306 (432)
                       .|++||+. +++...+..     ..++...   ...+.|+|+| +.|+..         ..+..|++||+.+++.    
T Consensus       264 ~~l~~~d~~-~g~~~~l~~-----~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~----  332 (388)
T 3pe7_A          264 RFIYSADPE-TLENRQLTS-----MPACSHLMSNYDGSLMVGDG-SDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ----  332 (388)
T ss_dssp             EEEEEECTT-TCCEEEEEE-----ECCEEEEEECTTSSEEEEEE-CCC------------CCCCEEEEEETTTTEE----
T ss_pred             ceEEEEecC-CCceEEEEc-----CCCceeeeecCCCCeEccCC-CcceeEeeeccccccCCCCEEEEEeccCCce----
Confidence             39999998 454322221     1221100   1123799999 666643         4566899999998764    


Q ss_pred             ceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC--CeEEEEec
Q 014005          307 ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKVFRY  355 (432)
Q Consensus       307 ~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~--~~i~iwd~  355 (432)
                       ..+..|.....  ..+.+....+..++|+|||++|+..++  +...||.+
T Consensus       333 -~~l~~~~~~~~--~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          333 -HRVARHDTSWK--VFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             -EEEEECCCCCC--CBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             -EEeccccCccc--ccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence             45554310000  000000114778899999998887533  66666655

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.68  E-value=4.5e-14  Score=125.50  Aligned_cols=240  Identities=8%  Similarity=-0.056  Sum_probs=164.5

Q ss_pred             CCCcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           31 DVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        31 h~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      +.....++.|+|+|+ +++++..++.|..|+.+++ .                            ..+..+.        
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~----------------------------~~~~~~~--------   68 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L----------------------------SPEMHPS--------   68 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E----------------------------EEEESSC--------
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e----------------------------EEEECCC--------
Confidence            455678999999998 7788888999999998775 1                            3455555        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec--
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH--  187 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--  187 (432)
                          ..+.++++  +++|+++++...++.|.+||..+++...+......         .....+..+++++++.+.++  
T Consensus        69 ----~~~~~l~~--~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~---------~~~~~~~~i~~d~~G~l~vtd~  133 (296)
T 3e5z_A           69 ----HHQNGHCL--NKQGHLIACSHGLRRLERQREPGGEWESIADSFEG---------KKLNSPNDVCLAPDGSLWFSDP  133 (296)
T ss_dssp             ----SSEEEEEE--CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT---------EECCCCCCEEECTTSCEEEEEC
T ss_pred             ----CCcceeeE--CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC---------CCCCCCCCEEECCCCCEEEECC
Confidence                67889999  89999887777778999999987775544221100         01135677899999987775  


Q ss_pred             --ceee---------ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCce---
Q 014005          188 --LEWT---------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC---  252 (432)
Q Consensus       188 --~~~~---------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~---  252 (432)
                        +...         ..+.-.||.+...  ++ ...+ ..+....+.++|+|+++.+++. .++.|.+||++..+..   
T Consensus       134 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~~-~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~  209 (296)
T 3e5z_A          134 TYGIDKPEEGYGGEMELPGRWVFRLAPD--GT-LSAP-IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQ  209 (296)
T ss_dssp             SHHHHCGGGSSCCCCCSSSCEEEEECTT--SC-EEEE-ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEE
T ss_pred             ccccccccccccccccCCCcEEEEECCC--CC-EEEe-ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCC
Confidence              3210         0112245555421  22 2233 3556678899999999998666 7899999999733333   


Q ss_pred             eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeE
Q 014005          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (432)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  332 (432)
                      ...+       ..+...+..++++++| ++.++.  ++.|.+||.. ++.    +..+..+             .. +.+
T Consensus       210 ~~~~-------~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~-g~~----~~~~~~~-------------~~-~~~  260 (296)
T 3e5z_A          210 GVHF-------TVEPGKTDGLRVDAGG-LIWASA--GDGVHVLTPD-GDE----LGRVLTP-------------QT-TSN  260 (296)
T ss_dssp             EEEE-------CCSSSCCCSEEEBTTS-CEEEEE--TTEEEEECTT-SCE----EEEEECS-------------SC-CCE
T ss_pred             CeEe-------eCCCCCCCeEEECCCC-CEEEEc--CCeEEEECCC-CCE----EEEEECC-------------CC-cee
Confidence            2222       2234456789999999 766655  8899999986 554    4666653             34 889


Q ss_pred             EEE-cCCCCEEEEeeCCeEEEEec
Q 014005          333 IKF-ANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       333 ~~~-s~dg~~l~s~~~~~i~iwd~  355 (432)
                      ++| +|+++.|..++.+.+.-++.
T Consensus       261 ~~f~~~d~~~L~v~t~~~l~~~~~  284 (296)
T 3e5z_A          261 LCFGGPEGRTLYMTVSTEFWSIET  284 (296)
T ss_dssp             EEEESTTSCEEEEEETTEEEEEEC
T ss_pred             EEEECCCCCEEEEEcCCeEEEEEc
Confidence            999 68999888876665555555

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.68  E-value=4e-15  Score=137.92  Aligned_cols=244  Identities=12%  Similarity=0.040  Sum_probs=154.3

Q ss_pred             cEEEEEEcCCCCEEEEeccc---ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           34 IVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      .+.+++|+|+|++|+.+...   ..|.+||+.+++..                            .+..+.         
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~----------------------------~l~~~~---------   79 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV----------------------------QLTEGK---------   79 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE----------------------------ECCCSS---------
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE----------------------------EeecCC---------
Confidence            36778999999998776442   36888888776421                            222222         


Q ss_pred             hhhcc-eeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccc--------cccccccccCCCC
Q 014005          111 EIEEK-INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL--------AEKNFMNEHNPPS  181 (432)
Q Consensus       111 ~~~~~-v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~  181 (432)
                         .. ...+.|  +|||++|+.++.++.|.+||+.+++...+.......  ....+..        .........++|+
T Consensus        80 ---~~~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~--~~~g~~l~~~~~~~~~~~~~~~~~~spd  152 (396)
T 3c5m_A           80 ---GDNTFGGFI--STDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEW--KGYGTWVANSDCTKLVGIEILKRDWQPL  152 (396)
T ss_dssp             ---CBCTTTCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE--EEEEEEEECTTSSEEEEEEEEGGGCCCC
T ss_pred             ---CCccccceE--CCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccccc--CCCCCEEEeccCCccccccccccccCCC
Confidence               22 234789  899999999999999999999988765554422110  0000000        0000011578888


Q ss_pred             Ccceeccee---eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cC------CeEEEEeCCCCC
Q 014005          182 FAHGYHLEW---TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DD------LRINLWNLEISD  250 (432)
Q Consensus       182 ~~~~~~~~~---~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d------~~i~lwd~~~~~  250 (432)
                      +..++....   ..+..+.+||+.   .++.....  .+...+..+.|+| ++..++.. .+      ..|.+||++ .+
T Consensus       153 g~~~~~~~~~~~~~~~~l~~~d~~---~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-~~  226 (396)
T 3c5m_A          153 TSWEKFAEFYHTNPTCRLIKVDIE---TGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED-GS  226 (396)
T ss_dssp             CSHHHHHHHHHTCCCEEEEEEETT---TCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT-SC
T ss_pred             CcceeeeeeccCCCcceEEEEECC---CCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC-CC
Confidence            887765531   226688999987   44444433  4566789999999 78777655 32      468888887 33


Q ss_pred             ceeeEeecCCCCcCCC-CcceEEEEEcCCCCcEEEEEeCC-----CeEEEEEccccccccccceeecccccccCCcccee
Q 014005          251 QCFNIVDMKPSNMDDL-TEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (432)
Q Consensus       251 ~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~  324 (432)
                      ......       ... ...+..+.|+|++ +.|+.++.+     +.|++||+.+++.     ..+...           
T Consensus       227 ~~~~l~-------~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~-----~~l~~~-----------  282 (396)
T 3c5m_A          227 NVRKIK-------EHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLEN-----EEVMVM-----------  282 (396)
T ss_dssp             CCEESS-------CCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCE-----EEEEEC-----------
T ss_pred             ceeEee-------ccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCe-----EEeeeC-----------
Confidence            322211       211 2358889999999 766666543     4599999988764     222221           


Q ss_pred             eeecceeEEEEcC-CCCEEEEee-----------------CCeEEEEec
Q 014005          325 EIIASISDIKFAN-DGQHLLSRD-----------------YMNLKVFRY  355 (432)
Q Consensus       325 ~~~~~v~~~~~s~-dg~~l~s~~-----------------~~~i~iwd~  355 (432)
                         .... +.|+| ||++++.+.                 +..|++||+
T Consensus       283 ---~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~  327 (396)
T 3c5m_A          283 ---PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT  327 (396)
T ss_dssp             ---CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred             ---CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence               1122 89999 999888642                 278999998

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.64  E-value=8.6e-14  Score=138.16  Aligned_cols=198  Identities=8%  Similarity=0.009  Sum_probs=130.6

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCC----------CeEEEEEccC------cceeeeeecCCCCcccccccccccccccccc
Q 014005          114 EKINRVRWCAAPNGSMFILSTND----------KTIKLWKVRD------QKVKKIKEMDHFPFVSSENTLLAEKNFMNEH  177 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d----------~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  177 (432)
                      ..+..++|  +|||+.|++++.+          ..|.+||+.+      ++...+..  .+.           ..+..++
T Consensus       130 ~~~~~~~~--spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~--~~~-----------~~~~~~~  194 (662)
T 3azo_A          130 LRWADPVL--LPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD--DAH-----------RFVTGPR  194 (662)
T ss_dssp             EEEEEEEE--ETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC--SCS-----------SEECCCE
T ss_pred             ccccCcEE--CCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe--cCC-----------CcccCce
Confidence            67889999  8999999998876          5899999988      65444320  112           4677889


Q ss_pred             CCCCCcceecceeec------cceEEEEeecc-cccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC--eEEEEeCC
Q 014005          178 NPPSFAHGYHLEWTE------NMATKIANVGN-SVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLE  247 (432)
Q Consensus       178 ~~~~~~~~~~~~~~~------~~~v~i~d~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~--~i~lwd~~  247 (432)
                      |+|++++++......      ...|.+||+.. .......... ..+...+..++|+|||++++++ .++  .|.+||+.
T Consensus       195 ~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~  273 (662)
T 3azo_A          195 LSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPA  273 (662)
T ss_dssp             ECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTT
T ss_pred             ECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC-CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECC
Confidence            999999998776521      24799999872 2111333433 4567889999999999977777 777  56666665


Q ss_pred             CCCceeeEeecCCCCcCCCCc--------ceEEEEEcCCCCcEEEEEeCCCeEEEE--Eccccccccccceeeccccccc
Q 014005          248 ISDQCFNIVDMKPSNMDDLTE--------VITSAEFHPIYCNLLAYSSSRGFVRLV--DMRQSALCDHSARILRDAAESH  317 (432)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~p~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~h~~~~  317 (432)
                       +++...+.       ..+..        .+..++|+|++ +++++++. +.++||  |+.+++     .+.+..|    
T Consensus       274 -~~~~~~l~-------~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~-----~~~l~~~----  334 (662)
T 3azo_A          274 -TGAATQLC-------RREEEFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPESGE-----LVDAAGP----  334 (662)
T ss_dssp             -TCCEEESS-------CCSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTTTE-----EEECCSS----
T ss_pred             -CCceeecc-------cccccccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCCCc-----EEEecCC----
Confidence             34433322       11111        15678999998 89999988 999999  554444     3556554    


Q ss_pred             CCccceeeeecceeEE-EEcCCCCEEEEeeC---CeEEEEec
Q 014005          318 GSKSFFTEIIASISDI-KFANDGQHLLSRDY---MNLKVFRY  355 (432)
Q Consensus       318 ~~~~~~~~~~~~v~~~-~~s~dg~~l~s~~~---~~i~iwd~  355 (432)
                               ...+..+ +++++..++++++.   ..|.+||+
T Consensus       335 ---------~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~  367 (662)
T 3azo_A          335 ---------WTEWAATLTVSGTRAVGVAASPRTAYEVVELDT  367 (662)
T ss_dssp             ---------CCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred             ---------CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence                     4556655 44433333333433   35666666

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.63  E-value=6.4e-14  Score=140.06  Aligned_cols=244  Identities=9%  Similarity=0.045  Sum_probs=162.5

Q ss_pred             CCcEEEEEEcCCCCEEEEecccc-----eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGG-----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      ...+..++|||||++||.+..++     +|++||+.+++..                           .. ....     
T Consensus       124 ~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~---------------------------~~-~~~~-----  170 (710)
T 2xdw_A          124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL---------------------------PD-VLER-----  170 (710)
T ss_dssp             CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE---------------------------EE-EEEE-----
T ss_pred             CEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC---------------------------cc-cccC-----
Confidence            34688999999999998765543     8999999887632                           11 1111     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCe----------------EEEEEccCccee--eeeecCCCCccccccccc
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKT----------------IKLWKVRDQKVK--KIKEMDHFPFVSSENTLL  168 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~----------------i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~  168 (432)
                             ..+..++|  +|||+.|+.++.++.                |++|++.+++..  .+.....++         
T Consensus       171 -------~~~~~~~w--spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~---------  232 (710)
T 2xdw_A          171 -------VKFSCMAW--THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEP---------  232 (710)
T ss_dssp             -------ECSCCEEE--CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCT---------
T ss_pred             -------cccceEEE--EeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCC---------
Confidence                   33667999  999999999987765                999999877632  222222122         


Q ss_pred             cccccccccCCCCCcceecceeec---cceEEEEeecccc---cce-eeEEeecCCCCCeeEEEeCCCCCEEEEE-c---
Q 014005          169 AEKNFMNEHNPPSFAHGYHLEWTE---NMATKIANVGNSV---HAR-CQKVYPHAHDFNINSISNNSDCETFVSA-D---  237 (432)
Q Consensus       169 ~~~~i~~~~~~~~~~~~~~~~~~~---~~~v~i~d~~~~~---~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~---  237 (432)
                        ..+..+.|+|++++++......   +..+.+||+....   .+. ..+.+ ..+...+.. .|+|+|+.|+.. .   
T Consensus       233 --~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l-~~~~~~~~~-~~s~dg~~l~~~s~~~~  308 (710)
T 2xdw_A          233 --KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL-IDNFEGEYD-YVTNEGTVFTFKTNRHS  308 (710)
T ss_dssp             --TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE-ECSSSSCEE-EEEEETTEEEEEECTTC
T ss_pred             --eEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe-eCCCCcEEE-EEeccCCEEEEEECCCC
Confidence              3456789999999988776522   4688999987310   021 23344 344444444 478888877754 3   


Q ss_pred             -CCeEEEEeCCCCCc-eeeEeecCCCCcCCCC--cceEEEEEcCCCCcEEEEEeCCCe--EEEEEccccccccccceeec
Q 014005          238 -DLRINLWNLEISDQ-CFNIVDMKPSNMDDLT--EVITSAEFHPIYCNLLAYSSSRGF--VRLVDMRQSALCDHSARILR  311 (432)
Q Consensus       238 -d~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~  311 (432)
                       ++.|.+||+..... ..+.+       ..+.  ..+..+.|++++ .++++...|+.  |.+||+.+++.    .+.+.
T Consensus       309 ~~~~l~~~d~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~~----~~~l~  376 (710)
T 2xdw_A          309 PNYRLINIDFTDPEESKWKVL-------VPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGAL----LKIFP  376 (710)
T ss_dssp             TTCEEEEEETTSCCGGGCEEE-------ECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCCE----EEEEC
T ss_pred             CCCEEEEEeCCCCCcccceec-------cCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCCE----EEecC
Confidence             34699999983321 12222       2332  368889999777 88888888885  56667656654    35555


Q ss_pred             ccccccCCccceeeeecceeEEEEcCCCCEEEE---e-eC-CeEEEEec
Q 014005          312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLS---R-DY-MNLKVFRY  355 (432)
Q Consensus       312 ~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s---~-~~-~~i~iwd~  355 (432)
                      .+             ...+..+.++|++..++.   + .. ++++.||+
T Consensus       377 ~~-------------~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          377 LE-------------VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL  412 (710)
T ss_dssp             CC-------------SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred             CC-------------CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence            53             467888999999876653   2 22 89999999

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.63  E-value=5.7e-13  Score=120.46  Aligned_cols=244  Identities=12%  Similarity=0.045  Sum_probs=154.9

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .+...+.+++|+|+|++++++..++.|.+||.++++..                           .....+.        
T Consensus        42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~---------------------------~~~~~~~--------   86 (333)
T 2dg1_A           42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK---------------------------RPFVSHK--------   86 (333)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---------------------------EEEECSS--------
T ss_pred             ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE---------------------------EEeeCCC--------
Confidence            34556789999999998888888999999998776421                           1122344        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCC----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (432)
                          ..+.++++  ++++++++++..+    +.|.+||..++....+......           ...+..+++++++...
T Consensus        87 ----~~~~~i~~--~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----------~~~~~~i~~d~~g~l~  149 (333)
T 2dg1_A           87 ----ANPAAIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST-----------AYCIDDMVFDSKGGFY  149 (333)
T ss_dssp             ----SSEEEEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS-----------CCCEEEEEECTTSCEE
T ss_pred             ----CCcceEEE--CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCcc-----------CCcccceEECCCCCEE
Confidence                67899999  8999888777666    6899999988765433221111           1457788899998766


Q ss_pred             ecceee----ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecC
Q 014005          186 YHLEWT----ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMK  259 (432)
Q Consensus       186 ~~~~~~----~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~  259 (432)
                      ++....    ..+.+..++..   ..+.....  .....+..++|+|+++.++.+  .++.|.+||++..+..+..+...
T Consensus       150 v~~~~~~~~~~~~~l~~~~~~---~~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~  224 (333)
T 2dg1_A          150 FTDFRGYSTNPLGGVYYVSPD---FRTVTPII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGAT  224 (333)
T ss_dssp             EEECCCBTTBCCEEEEEECTT---SCCEEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEE
T ss_pred             EEeccccccCCCceEEEEeCC---CCEEEEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccce
Confidence            654320    02344444443   22222221  223457899999999866544  68899999996323322211000


Q ss_pred             -CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005          260 -PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (432)
Q Consensus       260 -~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d  338 (432)
                       .....++ ..+..+++++++ +++++...++.|.+||.. ++.    +..+..+ ...      .++...+.+++|+||
T Consensus       225 ~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~-g~~----~~~~~~~-~~~------~g~~~~~~~~~~~~d  290 (333)
T 2dg1_A          225 IPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLVFNKR-GYP----IGQILIP-GRD------EGHMLRSTHPQFIPG  290 (333)
T ss_dssp             EEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEEECTT-SCE----EEEEECT-TGG------GTCSCBCCEEEECTT
T ss_pred             EEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEEECCC-CCE----EEEEEcC-CCc------cccccCcceEEECCC
Confidence             0011222 467889999999 888877788999999984 443    3444431 000      000125889999999


Q ss_pred             CCEEEE
Q 014005          339 GQHLLS  344 (432)
Q Consensus       339 g~~l~s  344 (432)
                      |+.|+.
T Consensus       291 g~~L~v  296 (333)
T 2dg1_A          291 TNQLII  296 (333)
T ss_dssp             SCEEEE
T ss_pred             CCEEEE
Confidence            876654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.61  E-value=4e-13  Score=117.53  Aligned_cols=234  Identities=9%  Similarity=-0.032  Sum_probs=156.4

Q ss_pred             cEEEEEEcCCCCEEE-EecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005           34 IVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  112 (432)
                      ...+++++++|++++ +...++.|.+|+..+....                           .....+.           
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---------------------------~~~~~~~-----------   66 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---------------------------VLPFNGL-----------   66 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---------------------------ECCCCSC-----------
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---------------------------eEeeCCc-----------
Confidence            778999999999777 5567889999987654311                           0001122           


Q ss_pred             hcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                       ..+.++++  +++++++++.. ++.|.+||..+.........  .           ...+..+++++++...++...  
T Consensus        67 -~~p~~i~~--~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~--~-----------~~~p~~i~~~~~g~l~v~~~~--  127 (270)
T 1rwi_B           67 -YQPQGLAV--DGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFD--G-----------LNYPEGLAVDTQGAVYVADRG--  127 (270)
T ss_dssp             -CSCCCEEE--CTTCCEEEEET-TTEEEEECTTCSCCEECCCC--S-----------CSSEEEEEECTTCCEEEEEGG--
T ss_pred             -CCcceeEE--CCCCCEEEEcC-CCEEEEEeCCCceEeeeecC--C-----------cCCCcceEECCCCCEEEEECC--
Confidence             45678999  88888666555 88999999876653322111  0           134677888888875555444  


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (432)
                      ++.|.+|+..   ........ ......+..++++++++.+++. .++.|.+||.. ........       ......+.
T Consensus       128 ~~~i~~~~~~---~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-~~~~~~~~-------~~~~~~p~  195 (270)
T 1rwi_B          128 NNRVVKLAAG---SKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE-SNNQVVLP-------FTDITAPW  195 (270)
T ss_dssp             GTEEEEECTT---CCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT-TCCEEECC-------CSSCCSEE
T ss_pred             CCEEEEEECC---CceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecC-CCceEeec-------ccCCCCce
Confidence            6778888654   22222111 2333468899999999877777 78999999988 33322211       22235688


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeec-ccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCe
Q 014005          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR-DAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN  349 (432)
Q Consensus       272 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~  349 (432)
                      .++++++| .++++...++.|.+||......     .... .+             ...+.+++++++|+++++. .+++
T Consensus       196 ~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~-----~~~~~~~-------------~~~p~~i~~~~~g~l~v~~~~~~~  256 (270)
T 1rwi_B          196 GIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS-----TVLPFTG-------------LNTPLAVAVDSDRTVYVADRGNDR  256 (270)
T ss_dssp             EEEECTTC-CEEEEETTTSCEEEECTTCSCC-----EECCCCS-------------CSCEEEEEECTTCCEEEEEGGGTE
T ss_pred             EEEECCCC-CEEEEECCCCcEEEEcCCCCcc-----eeeccCC-------------CCCceeEEECCCCCEEEEECCCCE
Confidence            99999998 8888877888999999875432     2221 11             2568899999999977775 4499


Q ss_pred             EEEEec
Q 014005          350 LKVFRY  355 (432)
Q Consensus       350 i~iwd~  355 (432)
                      |+++++
T Consensus       257 v~~~~~  262 (270)
T 1rwi_B          257 VVKLTS  262 (270)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999998

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.59  E-value=1.9e-13  Score=136.21  Aligned_cols=242  Identities=10%  Similarity=0.004  Sum_probs=156.4

Q ss_pred             CCCcEEEEEEcCCCCEEE-----EecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           31 DVDIVSAIEFDKTGDYLA-----VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~-----t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      |...+..++|||||++||     .|+.+.+|++||+++++..                           .  ..+...  
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~---------------------------~--~~~~~~--  167 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS---------------------------K--VDVIEG--  167 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC---------------------------S--SCCBSC--
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc---------------------------C--CcccCc--
Confidence            444789999999999998     4555678999999987632                           0  111100  


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCe-------------EEEEEccCccee--eeeecCCCCccccccccccc
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKT-------------IKLWKVRDQKVK--KIKEMDHFPFVSSENTLLAE  170 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~-------------i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~  170 (432)
                              .....++|  +|||+.|+.++.|..             |++|++.++...  .+.....+.           
T Consensus       168 --------~~~~~~~w--spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~-----------  226 (695)
T 2bkl_A          168 --------GKYATPKW--TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP-----------  226 (695)
T ss_dssp             --------CTTCCCEE--CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT-----------
T ss_pred             --------ccccceEE--ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC-----------
Confidence                    11257899  999999999988776             999999887632  332322222           


Q ss_pred             cccccccCCCCCcceecceeec--cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEc----CCeEEEE
Q 014005          171 KNFMNEHNPPSFAHGYHLEWTE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSAD----DLRINLW  244 (432)
Q Consensus       171 ~~i~~~~~~~~~~~~~~~~~~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----d~~i~lw  244 (432)
                      ..+..+.|+|++++++......  ...+.+++..   .+.. +.+ ..+...+....+ +++.+++.+.    ++.|.+|
T Consensus       227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~---~~~~-~~l-~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~  300 (695)
T 2bkl_A          227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG---EKDF-RLL-VKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEV  300 (695)
T ss_dssp             TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT---CSSC-EEE-EECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEE
T ss_pred             EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC---CCce-EEe-ecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEE
Confidence            4567889999999998877622  2255555443   2233 333 234445555566 5565444443    5789999


Q ss_pred             eCCCCCc--eeeEeecCCCCcCCC-CcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc-ccccccccceeecccccccCCc
Q 014005          245 NLEISDQ--CFNIVDMKPSNMDDL-TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSK  320 (432)
Q Consensus       245 d~~~~~~--~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~  320 (432)
                      |++....  ....+       ..+ ...+..++|+ ++ .++++...|+..+||.+. +++.    .+.+..+       
T Consensus       301 d~~~~~~~~~~~l~-------~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~----~~~l~~~-------  360 (695)
T 2bkl_A          301 DPAKPARASWKEIV-------PEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGKP----VRTVQLP-------  360 (695)
T ss_dssp             BTTBCSGGGCEEEE-------CCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCCE----EEECCCS-------
T ss_pred             eCCCCCccCCeEEe-------cCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCe----eEEecCC-------
Confidence            9973321  12222       222 4567888888 55 889999999998888765 3332    2334331       


Q ss_pred             cceeeeecceeEEEEcCCCCEEEE-e-e--C-CeEEEEec
Q 014005          321 SFFTEIIASISDIKFANDGQHLLS-R-D--Y-MNLKVFRY  355 (432)
Q Consensus       321 ~~~~~~~~~v~~~~~s~dg~~l~s-~-~--~-~~i~iwd~  355 (432)
                           ....+..++++|++..|+. . +  . ++|++||+
T Consensus       361 -----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~  395 (695)
T 2bkl_A          361 -----GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV  395 (695)
T ss_dssp             -----SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred             -----CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence                 0356778889999987663 1 2  2 78999999

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.59  E-value=2e-14  Score=133.12  Aligned_cols=253  Identities=8%  Similarity=-0.025  Sum_probs=146.2

Q ss_pred             EEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc-c--ccchhhhh
Q 014005           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF-D--YLKSLEIE  113 (432)
Q Consensus        37 ~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~-~--~~~~~~~~  113 (432)
                      .+.|+|+|++|+.++.++.|.+|++.+++..                           .....+..-. +  .+-.....
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~---------------------------~~~~~~~~~~~~g~~l~~~~~~  137 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQ---------------------------VIYTVDEEWKGYGTWVANSDCT  137 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEE---------------------------EEEECCTTEEEEEEEEECTTSS
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcE---------------------------EEEecccccCCCCCEEEeccCC
Confidence            3789999999999999999999998876521                           1111111000 0  00000000


Q ss_pred             c----ceeEEEEEEcCCCCEEEEE-----eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC-CCc
Q 014005          114 E----KINRVRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFA  183 (432)
Q Consensus       114 ~----~v~~l~~~~s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  183 (432)
                      .    ....+.|  +|+++.++.+     ..+..|.+||+.+++...+....              ..+..+.|+| ++.
T Consensus       138 ~~~~~~~~~~~~--spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~--------------~~~~~~~~sp~dg~  201 (396)
T 3c5m_A          138 KLVGIEILKRDW--QPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDT--------------AWLGHPIYRPFDDS  201 (396)
T ss_dssp             EEEEEEEEGGGC--CCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEES--------------SCEEEEEEETTEEE
T ss_pred             cccccccccccc--CCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCC--------------cccccceECCCCCC
Confidence            0    0001345  6788776654     35678999999888765544221              4567788999 777


Q ss_pred             ceecceeecc----ceEEEEeecccccceeeEEeecCC-CCCeeEEEeCCCCCEEEEE-cC-----CeEEEEeCCCCCce
Q 014005          184 HGYHLEWTEN----MATKIANVGNSVHARCQKVYPHAH-DFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQC  252 (432)
Q Consensus       184 ~~~~~~~~~~----~~v~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~-~d-----~~i~lwd~~~~~~~  252 (432)
                      .++.......    ..+.+|++.   ........ ... ...+..++|+|+|+.|+.+ .+     +.|++||+. +++.
T Consensus       202 ~l~~~~~~~~~~~~~~l~~~d~~---~~~~~~l~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~-~g~~  276 (396)
T 3c5m_A          202 TVGFCHEGPHDLVDARMWLVNED---GSNVRKIK-EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE-TLEN  276 (396)
T ss_dssp             EEEEEECSCSSSCSCCCEEEETT---SCCCEESS-CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT-TCCE
T ss_pred             EEEEEecCCCCCCCceEEEEECC---CCceeEee-ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC-CCCe
Confidence            6655443212    467777775   22222222 211 2357889999999987765 33     449999998 4443


Q ss_pred             eeEeecCCCCcCCCCcceEEEEEcC-CCCcEEEEEe----------------CCCeEEEEEccccccccccceeeccccc
Q 014005          253 FNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSS----------------SRGFVRLVDMRQSALCDHSARILRDAAE  315 (432)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~----------------~dg~i~iwd~~~~~~~~~~~~~~~~h~~  315 (432)
                      ..+..     ..+    .. +.|+| ++ +++++++                .++.|++||+.+++.     ..+..|..
T Consensus       277 ~~l~~-----~~~----~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-----~~l~~~~~  340 (396)
T 3c5m_A          277 EEVMV-----MPP----CS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-----QKLCKHST  340 (396)
T ss_dssp             EEEEE-----CCS----EE-EEEECSSS-SEEEEEECCC----------CCCCCCEEEEEETTTTBC-----CEEEECCC
T ss_pred             EEeee-----CCC----CC-CCccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEecccCce-----EEccCCCC
Confidence            33220     111    22 89999 99 7777654                347899999987764     44444310


Q ss_pred             ccCCccceeeeecceeEEEEcCCCCEEEEee-C-CeEEEEec
Q 014005          316 SHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKVFRY  355 (432)
Q Consensus       316 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~-~~i~iwd~  355 (432)
                      ....  ...+....+..++|+|||++|+..+ . +...+|.+
T Consensus       341 ~~~~--~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          341 SWDV--LDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             CCCC--BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             cccc--ccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence            0000  0000000256689999999888753 2 55555544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.58  E-value=2.5e-12  Score=113.51  Aligned_cols=243  Identities=9%  Similarity=0.047  Sum_probs=156.4

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccC-CCCCcceecceeec
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN-PPSFAHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~  192 (432)
                      ....++++  +++++++++...++.|.+||........+.......        .....+..+++ .+++...++.. ..
T Consensus        30 ~~p~~v~~--~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~--------~~~~~p~~i~~~~~~g~l~v~~~-~~   98 (286)
T 1q7f_A           30 TEPSGVAV--NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRD--------SQLLYPNRVAVVRNSGDIIVTER-SP   98 (286)
T ss_dssp             SCEEEEEE--CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSST--------TCBSSEEEEEEETTTTEEEEEEC-GG
T ss_pred             CCCceEEE--CCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCc--------ccccCceEEEEEcCCCeEEEEcC-CC
Confidence            56889999  889988888888999999998744332222110000        00134566777 45665555432 12


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (432)
                      ++.|.+|+.    .++.+..+...+...+..++++++++++++. .++.|.+||.+  +..+..+..     ..+...+.
T Consensus        99 ~~~i~~~d~----~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~-----~~~~~~p~  167 (286)
T 1q7f_A           99 THQIQIYNQ----YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGC-----SKHLEFPN  167 (286)
T ss_dssp             GCEEEEECT----TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEEC-----TTTCSSEE
T ss_pred             CCEEEEECC----CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCC-----CCccCCcE
Confidence            578999984    3455555533455678999999999988877 78999999976  444444411     23445689


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CC-e
Q 014005          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM-N  349 (432)
Q Consensus       272 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~-~  349 (432)
                      .++++|++ +++++...++.|++||.. ++.    +..+..+.           +...+..++++++|+++++.. ++ .
T Consensus       168 ~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~----~~~~~~~g-----------~~~~p~~i~~d~~G~l~v~~~~~~~~  230 (286)
T 1q7f_A          168 GVVVNDKQ-EIFISDNRAHCVKVFNYE-GQY----LRQIGGEG-----------ITNYPIGVGINSNGEILIADNHNNFN  230 (286)
T ss_dssp             EEEECSSS-EEEEEEGGGTEEEEEETT-CCE----EEEESCTT-----------TSCSEEEEEECTTCCEEEEECSSSCE
T ss_pred             EEEECCCC-CEEEEECCCCEEEEEcCC-CCE----EEEEccCC-----------ccCCCcEEEECCCCCEEEEeCCCCEE
Confidence            99999998 888877889999999975 433    34443310           024678999999999888864 45 9


Q ss_pred             EEEEec--CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          350 LKVFRY--EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       350 i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      |.+||.  +.+..+..+..        ...+ ..+........+++ +.++.|.+|+.
T Consensus       231 i~~~~~~g~~~~~~~~~~~--------~~~~-~~i~~~~~g~l~vs-~~~~~v~v~~~  278 (286)
T 1q7f_A          231 LTIFTQDGQLISALESKVK--------HAQC-FDVALMDDGSVVLA-SKDYRLYIYRY  278 (286)
T ss_dssp             EEEECTTSCEEEEEEESSC--------CSCE-EEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred             EEEECCCCCEEEEEcccCC--------CCcc-eeEEECCCCcEEEE-CCCCeEEEEEc
Confidence            999998  45555554331        0011 11111111123444 46889999984

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.57  E-value=2.3e-12  Score=117.76  Aligned_cols=237  Identities=11%  Similarity=0.052  Sum_probs=142.9

Q ss_pred             CCCEEEEe------cccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcce
Q 014005           43 TGDYLAVG------DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (432)
Q Consensus        43 ~g~~l~t~------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (432)
                      +++++.+.      ..|+.|.+||..+++..                           ..+..+.            .+ 
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~---------------------------~~i~~g~------------~p-   53 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFL---------------------------GMVPTAF------------NG-   53 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEE---------------------------EEEECCE------------EE-
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEE---------------------------EEecCCC------------CC-
Confidence            55555543      24789999998776532                           4454444            44 


Q ss_pred             eEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          117 NRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                       .++|  +||+++++++.          .++.|.+||..+.+...........       .........++++|++++++
T Consensus        54 -~i~~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~-------~~~g~~p~~i~~spdg~~l~  123 (361)
T 2oiz_A           54 -HVQV--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR-------VQGLNYDGLFRQTTDGKFIV  123 (361)
T ss_dssp             -EEEE--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB-------CCBCCCGGGEEECTTSSEEE
T ss_pred             -ceEE--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc-------cccCCCcceEEECCCCCEEE
Confidence             7899  99999999886          3678999999877643322211000       00113567899999999999


Q ss_pred             cceeeccceEEEEeecccccceeeEE-eecCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCCCCCcee----------
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKV-YPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCF----------  253 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~----------  253 (432)
                      .+....++.|.+||+.   +.+.+.. + .. . ....+.+.|++ ..+++. .||.+.+|+.+..++..          
T Consensus       124 v~n~~~~~~v~v~d~~---~~~~~~~~i-~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~  197 (361)
T 2oiz_A          124 LQNASPATSIGIVDVA---KGDYVEDVT-AA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFS  197 (361)
T ss_dssp             EEEESSSEEEEEEETT---TTEEEEEEG-GG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSC
T ss_pred             EECCCCCCeEEEEECC---CCcEEEEEe-cC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEc
Confidence            8876446789999998   5555555 3 11 1 11113334433 222333 44444444443212111          


Q ss_pred             --------------------------eEeecCCCC--------cCC----C----CcceEEEEEcCCCCcEEEEEeC---
Q 014005          254 --------------------------NIVDMKPSN--------MDD----L----TEVITSAEFHPIYCNLLAYSSS---  288 (432)
Q Consensus       254 --------------------------~~~~~~~~~--------~~~----~----~~~v~~~~~~p~~~~~l~~~~~---  288 (432)
                                                ..++.....        ...    .    ......++|+|++ +.++++..   
T Consensus       198 ~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg-~~lyv~~~~~~  276 (361)
T 2oiz_A          198 VKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS-GRMYVFMHPDG  276 (361)
T ss_dssp             TTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTT-TEEEEEEESSC
T ss_pred             CCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCC-CeEEEEEccCC
Confidence                                      001000000        000    0    0111127899998 55554432   


Q ss_pred             --------CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          289 --------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       289 --------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                              .+.|.+||+.+++.    +..+..+              . +.+++|+|||++|++++.+.|.+||.
T Consensus       277 ~~~~~~~~~~~v~viD~~t~~~----v~~i~~~--------------~-p~~ia~spdg~~l~v~n~~~v~v~D~  332 (361)
T 2oiz_A          277 KEGTHKFPAAEIWVMDTKTKQR----VARIPGR--------------D-ALSMTIDQQRNLMLTLDGGNVNVYDI  332 (361)
T ss_dssp             CTTCTTCCCSEEEEEETTTTEE----EEEEECT--------------T-CCEEEEETTTTEEEEECSSCEEEEEC
T ss_pred             CcccccCCCceEEEEECCCCcE----EEEEecC--------------C-eeEEEECCCCCEEEEeCCCeEEEEEC
Confidence                    34899999999886    6777774              4 89999999999999875599999999

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.56  E-value=1.9e-13  Score=137.26  Aligned_cols=208  Identities=10%  Similarity=0.040  Sum_probs=135.3

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec-
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-  192 (432)
                      ....++.|  +||+++++++  |+.|++||+.+++...+........        .......++|+|++++++.+.... 
T Consensus        17 ~~~~~~~w--~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~Spdg~~l~~~~~~~~   84 (740)
T 4a5s_A           17 LKLYSLRW--ISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDE--------FGHSINDYSISPDGQFILLEYNYVK   84 (740)
T ss_dssp             CCCCCEEE--CSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTT--------CCSCCCEEEECTTSSEEEEEEEEEE
T ss_pred             ccccccEE--CCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhh--------hcccccceEECCCCCEEEEEECCee
Confidence            34568899  8999888886  8999999999988655433221110        001122367899999998877521 


Q ss_pred             ------cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          193 ------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       193 ------~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                            .+.+.+||+.   ++++.+ + ..+...+...+|||||+.||.+.++.|++||+. ++...++.      ..++
T Consensus        85 ~~r~~~~~~~~~~d~~---~~~~~~-l-~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~-~~~~~~lt------~~g~  152 (740)
T 4a5s_A           85 QWRHSYTASYDIYDLN---KRQLIT-E-ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP-NLPSYRIT------WTGK  152 (740)
T ss_dssp             CSSSCEEEEEEEEETT---TTEECC-S-SCCCTTEEEEEECSSTTCEEEEETTEEEEESST-TSCCEECC------SCCB
T ss_pred             eEEEccceEEEEEECC---CCcEEE-c-ccCCCcceeeEECCCCCEEEEEECCeEEEEECC-CCceEEEc------CCCC
Confidence                  2577899998   455443 3 466778999999999999999888999999998 44433321      1222


Q ss_pred             Ccc-----------------eEEEEEcCCCCcEEEEEeCCC------------------------------------eEE
Q 014005          267 TEV-----------------ITSAEFHPIYCNLLAYSSSRG------------------------------------FVR  293 (432)
Q Consensus       267 ~~~-----------------v~~~~~~p~~~~~l~~~~~dg------------------------------------~i~  293 (432)
                      ...                 ...+.||||| +.||.++.|.                                    .|+
T Consensus       153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~  231 (740)
T 4a5s_A          153 EDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFF  231 (740)
T ss_dssp             TTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEE
T ss_pred             ccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEE
Confidence            222                 2358999999 8888876332                                    356


Q ss_pred             EEEccc---cccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe----eC-CeEEEEec
Q 014005          294 LVDMRQ---SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR----DY-MNLKVFRY  355 (432)
Q Consensus       294 iwd~~~---~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~----~~-~~i~iwd~  355 (432)
                      +||+.+   ++...  ...+.. +.      .+.++...+..++|||||+.++..    .. ..|++||+
T Consensus       232 v~d~~~~~~~~~~~--~~~l~~-~~------~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~  292 (740)
T 4a5s_A          232 VVNTDSLSSVTNAT--SIQITA-PA------SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDY  292 (740)
T ss_dssp             EEETTSCCSSSCCC--EEEECC-CH------HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEE
T ss_pred             EEECCCCCCCCcce--EEEecC-Cc------cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEEC
Confidence            666665   42100  122211 00      000125678999999999976652    12 47999998

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.56  E-value=8.1e-13  Score=120.12  Aligned_cols=221  Identities=10%  Similarity=0.143  Sum_probs=143.0

Q ss_pred             CcEEEEEEcCCCCEEEEeccc---ce--EEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           33 DIVSAIEFDKTGDYLAVGDRG---GR--VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~t~~~d---g~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ..+.++.|||+|++||.++.+   +.  |.+|++.+++.                            ..+..+.      
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~----------------------------~~l~~~~------  104 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS----------------------------KKILEAK------  104 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE----------------------------EEEEEES------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce----------------------------EEEEcCC------
Confidence            467889999999999887654   33  66777766542                            1233333      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCC---------------------------CeEEEEEccCcce-eeeeecCCCC
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTND---------------------------KTIKLWKVRDQKV-KKIKEMDHFP  159 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d---------------------------~~i~iwd~~~~~~-~~~~~~~~~~  159 (432)
                            . +..++|  +|||+.|+.++.+                           ..|.+||+.+++. ..+..     
T Consensus       105 ------~-~~~~~w--spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-----  170 (347)
T 2gop_A          105 ------N-IRSLEW--NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-----  170 (347)
T ss_dssp             ------E-EEEEEE--CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-----
T ss_pred             ------C-ccceeE--CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-----
Confidence                  5 889999  8999998888642                           5788999988775 33321     


Q ss_pred             ccccccccccccccccccCCCCCcceecceeecc----c-eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEE
Q 014005          160 FVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN----M-ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV  234 (432)
Q Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~-~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  234 (432)
                                . .+..+.|+|++ .++.+....+    . ...+|.+.   .++..... . + ..+..+  +|+|+.++
T Consensus       171 ----------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d---~~~~~~l~-~-~-~~~~~~--spdg~~l~  230 (347)
T 2gop_A          171 ----------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE---DGKEEKMF-E-K-VSFYAV--DSDGERIL  230 (347)
T ss_dssp             ----------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE---TTEEEEEE-E-E-ESEEEE--EECSSCEE
T ss_pred             ----------C-CcccccCCCCe-EEEEEecccccccccccccEEEeC---CCceEEec-c-C-cceeeE--CCCCCEEE
Confidence                      1 46678899999 6665543211    2 44566555   23333333 2 2 445444  89999887


Q ss_pred             EE-cC--------CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE-EEEcCCCCcEEEEEeCCCeEEEEEcccccccc
Q 014005          235 SA-DD--------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS-AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD  304 (432)
Q Consensus       235 ~~-~d--------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~  304 (432)
                      .+ .+        ..|.+|| .  ++.....       ..+...+.. +.|+ ++  ++++++.++.++|| +.+++.  
T Consensus       231 ~~~~~~~~~~~~~~~l~~~d-~--~~~~~l~-------~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~~--  294 (347)
T 2gop_A          231 LYGKPEKKYMSEHNKLYIYD-G--KEVMGIL-------DEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGEI--  294 (347)
T ss_dssp             EEECCSSSCCCSSCEEEEEC-S--SCEEESS-------TTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSSE--
T ss_pred             EEEccccCCccccceEEEEC-C--CceEecc-------ccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCce--
Confidence            65 33        3677777 3  4433322       455667886 8999 75  88888999999999 885543  


Q ss_pred             ccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeE-EEEec
Q 014005          305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNL-KVFRY  355 (432)
Q Consensus       305 ~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i-~iwd~  355 (432)
                         ..+..+             ...|.+++|+|  .+++++ +++.. .+|.+
T Consensus       295 ---~~~~~~-------------~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          295 ---KPIAKG-------------RHWIMGFDVDE--IVVYLKETATRLRELFTW  329 (347)
T ss_dssp             ---EEEECS-------------SSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred             ---EEEecC-------------CCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence               233222             46789999999  566654 44433 56655

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.55  E-value=1.7e-12  Score=118.59  Aligned_cols=237  Identities=12%  Similarity=0.090  Sum_probs=140.0

Q ss_pred             EEEEcCCCCEEEEec----------ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        37 ~~~fsp~g~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      .++|+|+|++|+++.          .++.|.+||..+.+..                           .++......+  
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~---------------------------~~i~~~~~~~--  104 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE---------------------------KEISLPPKRV--  104 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE---------------------------EEEEECTTBC--
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE---------------------------EEEEcCcccc--
Confidence            899999999998875          3678999998776532                           2332111000  


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeC--CCeEEEEEccCcceeee-eecCCC------Ccc-ccccccccccccccc
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHF------PFV-SSENTLLAEKNFMNE  176 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~------~~~-~~~~~~~~~~~i~~~  176 (432)
                          ........+++  +|||++|+++..  ++.|.+||+.+++.... ......      +.- .........+.+..+
T Consensus       105 ----~~g~~p~~i~~--spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v  178 (361)
T 2oiz_A          105 ----QGLNYDGLFRQ--TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTI  178 (361)
T ss_dssp             ----CBCCCGGGEEE--CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEE
T ss_pred             ----ccCCCcceEEE--CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEE
Confidence                00034566888  899999988864  57899999988764332 111100      000 000000001111111


Q ss_pred             ---------------------------cCCCCCcceecceeeccceEEEEeecccccceeeEEeec-C----C----CCC
Q 014005          177 ---------------------------HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPH-A----H----DFN  220 (432)
Q Consensus       177 ---------------------------~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~-~----~----~~~  220 (432)
                                                 .+++++..++....  ++.+.++|+... .......+.. .    +    ...
T Consensus       179 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~v~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~g  255 (361)
T 2oiz_A          179 NLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSY--YGNVYSADFSGD-EVKVDGPWSLLNDEDKAKNWVPGG  255 (361)
T ss_dssp             EECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBT--TSEEEEEECSSS-SCEEEEEEESCCHHHHHTTCEECC
T ss_pred             EECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeC--CCeEEEEEecCC-CceecccccccCccccccccccCC
Confidence                                       11122222222222  567888887532 1111121100 0    0    112


Q ss_pred             eeEEEeCCCCCEEEEE-c-----------CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeC
Q 014005          221 INSISNNSDCETFVSA-D-----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS  288 (432)
Q Consensus       221 i~~~~~~~~~~~l~~~-~-----------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  288 (432)
                      ...++++|+++.+.++ .           ++.|.+||+. +.+.+..+       ..+.  +.+++|+|++ ++|++++.
T Consensus       256 ~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~-t~~~v~~i-------~~~~--p~~ia~spdg-~~l~v~n~  324 (361)
T 2oiz_A          256 YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK-TKQRVARI-------PGRD--ALSMTIDQQR-NLMLTLDG  324 (361)
T ss_dssp             SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT-TTEEEEEE-------ECTT--CCEEEEETTT-TEEEEECS
T ss_pred             eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC-CCcEEEEE-------ecCC--eeEEEECCCC-CEEEEeCC
Confidence            2237899998887766 4           3479999999 67777765       4444  8999999999 88888776


Q ss_pred             CCeEEEEEcccc--ccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005          289 RGFVRLVDMRQS--ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (432)
Q Consensus       289 dg~i~iwd~~~~--~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~  340 (432)
                       +.|.+||+.++  +.    +..+..+             ......++++|+|+
T Consensus       325 -~~v~v~D~~t~~l~~----~~~i~~~-------------G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          325 -GNVNVYDISQPEPKL----LRTIEGA-------------AEASLQVQFHPVGG  360 (361)
T ss_dssp             -SCEEEEECSSSSCEE----EEEETTS-------------CSSEEEEEECCCSC
T ss_pred             -CeEEEEECCCCccee----eEEeccC-------------CCCcEEEEecCCCC
Confidence             99999999998  65    4555432             45678899999986

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.52  E-value=1.5e-11  Score=110.84  Aligned_cols=248  Identities=6%  Similarity=0.007  Sum_probs=159.5

Q ss_pred             CcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  112 (432)
                      +....+.++ .++++++...++.|.+||..+++..                           .++.. .           
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~---------------------------~~i~~-~-----------   83 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV---------------------------GRITG-F-----------   83 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE---------------------------EEEEC-C-----------
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE---------------------------EEcCC-C-----------
Confidence            346777775 3555566667889999999887643                           34432 2           


Q ss_pred             hcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                       .....+++  +++++.+++...++.|.+||..+++...........        ........+++  ++..++.+....
T Consensus        84 -~~p~~i~~--~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~--------~~~~~p~~i~~--~~~~lyv~~~~~  150 (328)
T 3dsm_A           84 -TSPRYIHF--LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD--------MESGSTEQMVQ--YGKYVYVNCWSY  150 (328)
T ss_dssp             -SSEEEEEE--EETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC--------TTTCBCCCEEE--ETTEEEEEECTT
T ss_pred             -CCCcEEEE--eCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc--------ccCCCcceEEE--ECCEEEEEcCCC
Confidence             45778888  678854444448899999999988755433322100        00013344555  334444443212


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC----------CeEEEEeCCCCCceeeEeecCCC
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----------LRINLWNLEISDQCFNIVDMKPS  261 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d----------~~i~lwd~~~~~~~~~~~~~~~~  261 (432)
                      ++.|.++|..   +.+....+..  ......++++|+|++++++ .+          +.|.++|.+ +++....+.+   
T Consensus       151 ~~~v~viD~~---t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~-t~~v~~~~~~---  221 (328)
T 3dsm_A          151 QNRILKIDTE---TDKVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE-TFTVEKQFKF---  221 (328)
T ss_dssp             CCEEEEEETT---TTEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT-TTEEEEEEEC---
T ss_pred             CCEEEEEECC---CCeEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC-CCeEEEEEec---
Confidence            6789999998   5566666522  3456789999999877776 54          789999998 5665555421   


Q ss_pred             CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC-CCC
Q 014005          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQ  340 (432)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-dg~  340 (432)
                         ......+.++|+|++ +.|.++..  .|.+||..+++...  ...+..+             ......++++| +++
T Consensus       222 ---~~g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~--~~~~~~~-------------~~~p~gi~vdp~~g~  280 (328)
T 3dsm_A          222 ---KLGDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADRVPV--RPFLEFR-------------DTKYYGLTVNPNNGE  280 (328)
T ss_dssp             ---CTTCCCEEEEECTTS-CEEEEESS--SEEEEETTCSSCCS--SCSBCCC-------------SSCEEEEEECTTTCC
T ss_pred             ---CCCCCceeEEEecCC-CEEEEEcc--EEEEEECCCCceee--eeeecCC-------------CCceEEEEEcCCCCe
Confidence               112357899999998 77776654  89999998876421  1111110             24678899999 455


Q ss_pred             EEEEe----eC-CeEEEEec--CcceeEee
Q 014005          341 HLLSR----DY-MNLKVFRY--EPVMTLSF  363 (432)
Q Consensus       341 ~l~s~----~~-~~i~iwd~--~~~~~~~~  363 (432)
                      +.++.    .. +.|.+||.  +.+.++..
T Consensus       281 lyva~~~~y~~~~~V~v~d~~g~~~~~i~~  310 (328)
T 3dsm_A          281 VYVADAIDYQQQGIVYRYSPQGKLIDEFYV  310 (328)
T ss_dssp             EEEEECTTSSSEEEEEEECTTCCEEEEEEE
T ss_pred             EEEEcccccccCCEEEEECCCCCEEEEEEe
Confidence            55554    34 99999999  55666654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.52  E-value=2.5e-12  Score=116.87  Aligned_cols=222  Identities=10%  Similarity=0.060  Sum_probs=146.2

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEec---------ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeec
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGD---------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS   99 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~   99 (432)
                      +.....+..+++  +|++++...         .++.|.+|++++++.                            ..+  
T Consensus        11 l~~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~----------------------------~~l--   58 (347)
T 2gop_A           11 FAKFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR----------------------------RFI--   58 (347)
T ss_dssp             CCCSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE----------------------------EEE--
T ss_pred             ceeeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce----------------------------EEc--
Confidence            344557888888  899887642         256788999877642                            112  


Q ss_pred             CCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCC---C--eEEEEEccCcceeeeeecCCCCccccccccccccccc
Q 014005          100 HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND---K--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (432)
Q Consensus       100 h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d---~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  174 (432)
                                    ..+..++|  +|||++|+.++.+   +  .|.+|++.+++...+....              . +.
T Consensus        59 --------------~~~~~~~~--SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~--------------~-~~  107 (347)
T 2gop_A           59 --------------ENATMPRI--SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK--------------N-IR  107 (347)
T ss_dssp             --------------ESCEEEEE--CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES--------------E-EE
T ss_pred             --------------ccCCCeEE--CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC--------------C-cc
Confidence                          23677899  9999999887653   3  4777888877755543321              3 77


Q ss_pred             cccCCCCCcceecceee-------------------------ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC
Q 014005          175 NEHNPPSFAHGYHLEWT-------------------------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD  229 (432)
Q Consensus       175 ~~~~~~~~~~~~~~~~~-------------------------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  229 (432)
                      .+.|+|++..++.....                         ....+.+||+.   .++.++.+ .. . .+..++|+|+
T Consensus       108 ~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~---~~~~~~~l-~~-~-~~~~~~~spd  181 (347)
T 2gop_A          108 SLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE---SEEVIEEF-EK-P-RFSSGIWHRD  181 (347)
T ss_dssp             EEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT---TTEEEEEE-EE-E-TTCEEEEETT
T ss_pred             ceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC---CCeEEeee-cC-C-CcccccCCCC
Confidence            88999999988776531                         02568888887   44553444 22 3 7889999999


Q ss_pred             CCEEEEE-cC------C-eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC--------CeEE
Q 014005          230 CETFVSA-DD------L-RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------GFVR  293 (432)
Q Consensus       230 ~~~l~~~-~d------~-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~  293 (432)
                      | +++++ .+      . ...+|.++ ++....+.        .+ ..+..+  +|+| +.|+.++.+        ..|.
T Consensus       182 g-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~--------~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~  247 (347)
T 2gop_A          182 K-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMF--------EK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLY  247 (347)
T ss_dssp             E-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEE--------EE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEE
T ss_pred             e-EEEEEecccccccccccccEEEeC-CCceEEec--------cC-cceeeE--CCCC-CEEEEEEccccCCccccceEE
Confidence            9 77766 43      2 44566555 44433322        22 445444  9999 777776644        3688


Q ss_pred             EEEccccccccccceeecccccccCCccceeeeecceeE-EEEcCCCCEEEEe-eCCeEEEEec
Q 014005          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD-IKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~-~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                      +||  +++.    ......|             ...+.. +.|+ || +++++ .++.++|| +
T Consensus       248 ~~d--~~~~----~~l~~~~-------------~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~  289 (347)
T 2gop_A          248 IYD--GKEV----MGILDEV-------------DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-I  289 (347)
T ss_dssp             EEC--SSCE----EESSTTC-------------CSEEEEEEEET-TE-EEEEEEETTEEEEE-E
T ss_pred             EEC--CCce----EeccccC-------------CcccCCccEEc-Cc-EEEEEecCCcEEEE-E
Confidence            888  4443    2333343             456776 8999 88 77776 44999999 8

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.51  E-value=1.6e-12  Score=117.46  Aligned_cols=249  Identities=8%  Similarity=0.015  Sum_probs=162.3

Q ss_pred             CcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  112 (432)
                      ..|.++.|++++..++..+.++.++.|.-   +                           ....+..+.           
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------------------------~~~~~~~~~-----------   44 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITA---E---------------------------PWLEISKKG-----------   44 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---E---------------------------EEEEEESSC-----------
T ss_pred             cccceeeecCCccceeEEeecccCccccc---c---------------------------eeEEEeccC-----------
Confidence            35778899999888877778888999821   1                           113455555           


Q ss_pred             hcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                       ..+.+++|  ++++++++++..++.|.+||..+++...+...  ..           ..+..+++++++..++....  
T Consensus        45 -~~~~~~~~--~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~-----------~~~~~i~~~~dg~l~v~~~~--  106 (333)
T 2dg1_A           45 -LQLEGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPFVS--HK-----------ANPAAIKIHKDGRLFVCYLG--  106 (333)
T ss_dssp             -CCEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEEEC--SS-----------SSEEEEEECTTSCEEEEECT--
T ss_pred             -ccccCcEE--CCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC--CC-----------CCcceEEECCCCcEEEEeCC--
Confidence             66789999  89999888888899999999988775544321  11           56788999999886665443  


Q ss_pred             c----ceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-c------CCeEEEEeCCCCCceeeEeecCC
Q 014005          193 N----MATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMKP  260 (432)
Q Consensus       193 ~----~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~------d~~i~lwd~~~~~~~~~~~~~~~  260 (432)
                      +    +.|.+||...   ......+. ..+...+++++++|+|+++++. .      .+.|..+|.+ +++. ..+    
T Consensus       107 ~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~-~~~~-~~~----  177 (333)
T 2dg1_A          107 DFKSTGGIFAATENG---DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTV-TPI----  177 (333)
T ss_dssp             TSSSCCEEEEECTTS---CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCE-EEE----
T ss_pred             CCCCCceEEEEeCCC---CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC-CCEE-EEe----
Confidence            3    5788898773   33322221 1244578999999999887776 3      2456666655 2232 222    


Q ss_pred             CCcCCCCcceEEEEEcCCCCcEE-EEEeCCCeEEEEEccc-cccccccceeecccccccCCccceeeeecceeEEEEcCC
Q 014005          261 SNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND  338 (432)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d  338 (432)
                         ......+..++|+|++ +.| ++.+.++.|.+||+.+ +..    ...+......     .+.. ...+..++++++
T Consensus       178 ---~~~~~~~~~i~~~~dg-~~l~v~~~~~~~i~~~d~~~~g~~----~~~~~~~~~~-----~~~~-~~~~~~i~~d~~  243 (333)
T 2dg1_A          178 ---IQNISVANGIALSTDE-KVLWVTETTANRLHRIALEDDGVT----IQPFGATIPY-----YFTG-HEGPDSCCIDSD  243 (333)
T ss_dssp             ---EEEESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSSS----EEEEEEEEEE-----ECCS-SSEEEEEEEBTT
T ss_pred             ---ecCCCcccceEECCCC-CEEEEEeCCCCeEEEEEecCCCcC----cccccceEEE-----ecCC-CCCCCceEECCC
Confidence               1222347899999998 655 4555688999999864 332    1211100000     0000 135678999999


Q ss_pred             CCEEEEee-CCeEEEEec--CcceeEee
Q 014005          339 GQHLLSRD-YMNLKVFRY--EPVMTLSF  363 (432)
Q Consensus       339 g~~l~s~~-~~~i~iwd~--~~~~~~~~  363 (432)
                      |+++++.. ++.|.+||.  +.+..+..
T Consensus       244 G~l~v~~~~~~~v~~~d~~g~~~~~~~~  271 (333)
T 2dg1_A          244 DNLYVAMYGQGRVLVFNKRGYPIGQILI  271 (333)
T ss_dssp             CCEEEEEETTTEEEEECTTSCEEEEEEC
T ss_pred             CCEEEEEcCCCEEEEECCCCCEEEEEEc
Confidence            99877764 489999998  44444443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.50  E-value=1.8e-11  Score=109.44  Aligned_cols=241  Identities=11%  Similarity=0.060  Sum_probs=155.6

Q ss_pred             cEEEEEEcCCCCEEEE-------ecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee-----cCC
Q 014005           34 IVSAIEFDKTGDYLAV-------GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-----SHE  101 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-----~h~  101 (432)
                      ...+++|+++|.++++       +..++.|.+||..+++..                            .+.     ++.
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~----------------------------~~~~~~~~~~~   70 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT----------------------------VICKPEVNGYG   70 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE----------------------------EEECCEETTEE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE----------------------------EEEecccCCCC
Confidence            5678999999998887       677889999997765421                            111     133


Q ss_pred             ccccccchhhhhcceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeee-eecCCCCccccccccccccccccccCC
Q 014005          102 PEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNP  179 (432)
Q Consensus       102 ~~~~~~~~~~~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~  179 (432)
                                  ..+.++.+  +++ ++++++. ..+.|.+||.. ++...+ ......         .....+..++++
T Consensus        71 ------------~~~~~i~~--~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~---------~~~~~~~~i~~d  125 (314)
T 1pjx_A           71 ------------GIPAGCQC--DRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEG---------RRMQGCNDCAFD  125 (314)
T ss_dssp             ------------CCEEEEEE--CSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTS---------CBCBCCCEEEEC
T ss_pred             ------------CCCceEEE--ecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCC---------ccccCCcCEEEC
Confidence                        56889999  888 6545444 44579999988 664433 211100         011357788889


Q ss_pred             CCCcceecceeec-------------cceEEEEeecccccceeeEEeecCCCCCeeEEEeC----CCCCEEEEE--cCCe
Q 014005          180 PSFAHGYHLEWTE-------------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNN----SDCETFVSA--DDLR  240 (432)
Q Consensus       180 ~~~~~~~~~~~~~-------------~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~--~d~~  240 (432)
                      +++...++.....             .+.+..++..    ++.....  .+......++++    |+++.+..+  .++.
T Consensus       126 ~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~~~~--~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~  199 (314)
T 1pjx_A          126 YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD----GQMIQVD--TAFQFPNGIAVRHMNDGRPYQLIVAETPTKK  199 (314)
T ss_dssp             TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT----SCEEEEE--EEESSEEEEEEEECTTSCEEEEEEEETTTTE
T ss_pred             CCCCEEEEecCcccccccccccccCCCCeEEEECCC----CCEEEec--cCCCCcceEEEecccCCCCCEEEEEECCCCe
Confidence            9887665543310             1345555543    2222222  233456889999    999765544  6889


Q ss_pred             EEEEeCCCCCce--eeEeecCCCCcCCCC-cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccccc
Q 014005          241 INLWNLEISDQC--FNIVDMKPSNMDDLT-EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH  317 (432)
Q Consensus       241 i~lwd~~~~~~~--~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~  317 (432)
                      |.+||.+..+..  ...+    ..+..+. ..+..++++++| +++++...++.|.+||..+++.    ...+..+    
T Consensus       200 i~~~~~~~~g~~~~~~~~----~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~----~~~~~~~----  266 (314)
T 1pjx_A          200 LWSYDIKGPAKIENKKVW----GHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQP----KMRIRCP----  266 (314)
T ss_dssp             EEEEEEEETTEEEEEEEE----EECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSC----SEEEECS----
T ss_pred             EEEEECCCCCccccceEE----EECCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcE----eEEEeCC----
Confidence            999998622321  1111    0113333 567889999999 8888877889999999886664    3455442    


Q ss_pred             CCccceeeeecceeEEEEcCCCCEEEEe-eC-CeEEEEec
Q 014005          318 GSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKVFRY  355 (432)
Q Consensus       318 ~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~-~~i~iwd~  355 (432)
                               ...+.+++|+|+|++|..+ .. +.|..|++
T Consensus       267 ---------~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          267 ---------FEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             ---------SSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             ---------CCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence                     3678999999999955554 33 79999998

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.49  E-value=5.2e-12  Score=126.82  Aligned_cols=241  Identities=12%  Similarity=0.024  Sum_probs=155.0

Q ss_pred             CcEEEEEEcCCCCEEEEeccc-----ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           33 DIVSAIEFDKTGDYLAVGDRG-----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ..+..++|||||++||.++.+     .+|++||+++++..                            ....+.      
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~----------------------------~~~~~~------  208 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL----------------------------ADELKW------  208 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE----------------------------EEEEEE------
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC----------------------------CccCCC------
Confidence            368899999999999887654     46999999987632                            111111      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCe--------------EEEEEccCccee--eeeecCCCCcccccccccccc
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKT--------------IKLWKVRDQKVK--KIKEMDHFPFVSSENTLLAEK  171 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~--------------i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  171 (432)
                            ..+..++|  +|| +.|+.++.++.              |.+|++.++...  .+.....++           .
T Consensus       209 ------~~~~~~~w--spD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~-----------~  268 (741)
T 1yr2_A          209 ------VKFSGLAW--LGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELP-----------K  268 (741)
T ss_dssp             ------EESCCCEE--STT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCT-----------T
T ss_pred             ------ceeccEEE--ECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCC-----------e
Confidence                  23457899  899 88888876554              889998776532  222222111           2


Q ss_pred             ccccccCCCCCcceecceeec---cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c----CCeEEE
Q 014005          172 NFMNEHNPPSFAHGYHLEWTE---NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----DLRINL  243 (432)
Q Consensus       172 ~i~~~~~~~~~~~~~~~~~~~---~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~----d~~i~l  243 (432)
                      .+..+.|+|++++++......   ...+.+||+... ...+.+.+ ..+........ +|+|+.|+.. .    ++.|.+
T Consensus       269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~-~~~~~~~l-~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~  345 (741)
T 1yr2_A          269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG-KIGPVTAL-IPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVR  345 (741)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT-EECCCEEE-ECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEE
T ss_pred             EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC-CCcccEEe-cCCCCceEEEE-eccCCEEEEEECCCCCCCEEEE
Confidence            467889999999888776522   348899998732 11213334 23344444443 4888887765 4    356999


Q ss_pred             EeCCCC-CceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc-ccccccccceeecccccccCCcc
Q 014005          244 WNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKS  321 (432)
Q Consensus       244 wd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~h~~~~~~~~  321 (432)
                      ||++.. ......+       ..+...+..+.++ ++ .++++...|+..+||.+. +++.    .+.+..+        
T Consensus       346 ~d~~~~~~~~~~l~-------~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~----~~~l~~~--------  404 (741)
T 1yr2_A          346 VDLSGSTPRFDTVV-------PESKDNLESVGIA-GN-RLFASYIHDAKSQVLAFDLDGKP----AGAVSLP--------  404 (741)
T ss_dssp             EECSSSSCEEEEEE-------CCCSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEETTSCE----EEECBCS--------
T ss_pred             EeCCCCccccEEEe-------cCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCc----eeeccCC--------
Confidence            998832 2233332       3444557778887 44 788888999988877655 3332    2444321        


Q ss_pred             ceeeeecceeEEEEcCCCCEEEE---e-eC-CeEEEEec
Q 014005          322 FFTEIIASISDIKFANDGQHLLS---R-DY-MNLKVFRY  355 (432)
Q Consensus       322 ~~~~~~~~v~~~~~s~dg~~l~s---~-~~-~~i~iwd~  355 (432)
                          ....+..+.++|+++.|+.   + .. ++|++||+
T Consensus       405 ----~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          405 ----GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             ----SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             ----CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence                0356888999999876652   2 22 89999998

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.47  E-value=1.3e-11  Score=111.28  Aligned_cols=248  Identities=10%  Similarity=0.023  Sum_probs=156.0

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCC------------------------CeEEEEEccCcceeeeeecCCCCcccccccccc
Q 014005          114 EKINRVRWCAAPNGSMFILSTND------------------------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (432)
                      ..+.++++  +++|+++++...+                        +.|.+||..++++...... ..-          
T Consensus        24 ~~v~~va~--d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~----------   90 (329)
T 3fvz_A           24 GQVSGVAL--DSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK-NLF----------   90 (329)
T ss_dssp             SCEEEEEE--CTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT-TTC----------
T ss_pred             CCceEEEE--CCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC-Ccc----------
Confidence            67899999  8999988888776                        4799999987775433221 111          


Q ss_pred             ccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEee--------cCCCCCeeEEEeCC-CCCEEEEE--cC
Q 014005          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYP--------HAHDFNINSISNNS-DCETFVSA--DD  238 (432)
Q Consensus       170 ~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~-~~~~l~~~--~d  238 (432)
                       .....+++++++...++...  ++.|++|+....  ...+..+.        ..+......++++| ++.++++.  .+
T Consensus        91 -~~p~gia~d~~g~l~v~d~~--~~~v~~~~~~g~--~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~  165 (329)
T 3fvz_A           91 -YLPHGLSIDTDGNYWVTDVA--LHQVFKLDPHSK--EGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN  165 (329)
T ss_dssp             -SSEEEEEECTTSCEEEEETT--TTEEEEECTTCS--SCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC
T ss_pred             -CCceEEEECCCCCEEEEECC--CCEEEEEeCCCC--eEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC
Confidence             34667889999987766555  789999997632  11333331        23344788999999 78877776  38


Q ss_pred             CeEEEEeCCCCCceeeEeecCCCC---cCCCCcceEEEEEcCC-CCcEEEEEeCCCeEEEEEccccccccccceeecccc
Q 014005          239 LRINLWNLEISDQCFNIVDMKPSN---MDDLTEVITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA  314 (432)
Q Consensus       239 ~~i~lwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~  314 (432)
                      +.|++||.+  +..+..+......   ..++-.....++++|+ + +++++...++.|++||..+++.    +..+... 
T Consensus       166 ~~I~~~~~~--g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g-~l~v~d~~~~~I~~~~~~~G~~----~~~~~~~-  237 (329)
T 3fvz_A          166 SRIVQFSPS--GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD-QLCVADRENGRIQCFKTDTKEF----VREIKHA-  237 (329)
T ss_dssp             CEEEEECTT--SCEEEEECEECCSSSCCTTEESCEEEEEEETTTT-EEEEEETTTTEEEEEETTTCCE----EEEECCT-
T ss_pred             CeEEEEcCC--CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC-EEEEEECCCCEEEEEECCCCcE----EEEEecc-
Confidence            999999955  5555554110000   0123345899999999 6 8888888899999999987775    4555331 


Q ss_pred             cccCCccceeeeecceeEEEEcC------CCCEEEEeeC-CeEEEEec---CcceeEeecceeeeehhhhhccccccccc
Q 014005          315 ESHGSKSFFTEIIASISDIKFAN------DGQHLLSRDY-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYA  384 (432)
Q Consensus       315 ~~~~~~~~~~~~~~~v~~~~~s~------dg~~l~s~~~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (432)
                                .+...+..++|+|      +|+..++... ..|++||+   +.+..+.....      .+ ..+. .+..
T Consensus       238 ----------~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~------~~-~~p~-~ia~  299 (329)
T 3fvz_A          238 ----------SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRK------HF-DMPH-DIVA  299 (329)
T ss_dssp             ----------TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSS------CC-SSEE-EEEE
T ss_pred             ----------ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCC------cc-CCee-EEEE
Confidence                      0134677888998      3332222222 58999998   44444421110      00 1111 1111


Q ss_pred             ceeeEEEEeecccceeeeecc
Q 014005          385 LSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       385 ~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      .......++...++.|.+|+.
T Consensus       300 ~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          300 SEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             CTTSEEEEEESSSCCEEEEEE
T ss_pred             CCCCCEEEEECCCCEEEEEeC
Confidence            112234666777888888883

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.47  E-value=4.1e-10  Score=99.64  Aligned_cols=238  Identities=7%  Similarity=-0.037  Sum_probs=161.4

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ...+.++.++++|+++++...++.|.+||.. ++..                         . .....+.          
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-------------------------~-~~~~~~~----------   56 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-------------------------E-YPLPTPD----------   56 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-------------------------E-EECSSTT----------
T ss_pred             CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-------------------------E-ecCCccc----------
Confidence            4579999999999988777667899999977 4311                         0 0111222          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                        ..+.++++  ++++.++++...++.|..||.. ++..... ....           ...+..+++++++...+.... 
T Consensus        57 --~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~~~-----------~~~~~~i~~~~~g~l~v~~~~-  118 (299)
T 2z2n_A           57 --AKVMCLTI--SSDGEVWFTENAANKIGRITKK-GIIKEYT-LPNP-----------DSAPYGITEGPNGDIWFTEMN-  118 (299)
T ss_dssp             --CCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEE-CSST-----------TCCEEEEEECTTSCEEEEETT-
T ss_pred             --CceeeEEE--CCCCCEEEeCCCCCeEEEECCC-CcEEEEe-CCCc-----------CCCceeeEECCCCCEEEEecC-
Confidence              56888999  8899888777778899999986 3332221 1111           145677888888876665444 


Q ss_pred             ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                       ++.+..+|...    +............+..+++.++++..++. .++.|..||..  +......      .......+
T Consensus       119 -~~~i~~~d~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~------~~~~~~~~  185 (299)
T 2z2n_A          119 -GNRIGRITDDG----KIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITES--GDITEFK------IPTPASGP  185 (299)
T ss_dssp             -TTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEEEE------CSSTTCCE
T ss_pred             -CceEEEECCCC----CEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCC--CcEEEee------CCCCCCcc
Confidence             66788888731    11121113345678999999999888877 78899999984  3333221      12334568


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCe
Q 014005          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN  349 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~  349 (432)
                      ..+++++++ ++.++...++.|.+||. +++.     ..+.. +          .....+.+++++++|++.++. ..+.
T Consensus       186 ~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~-----~~~~~-~----------~~~~~~~~i~~~~~g~l~v~~~~~~~  247 (299)
T 2z2n_A          186 VGITKGNDD-ALWFVEIIGNKIGRITT-SGEI-----TEFKI-P----------TPNARPHAITAGAGIDLWFTEWGANK  247 (299)
T ss_dssp             EEEEECTTS-SEEEEETTTTEEEEECT-TCCE-----EEEEC-S----------STTCCEEEEEECSTTCEEEEETTTTE
T ss_pred             eeEEECCCC-CEEEEccCCceEEEECC-CCcE-----EEEEC-C----------CCCCCceeEEECCCCCEEEeccCCce
Confidence            899999998 87777667889999998 6653     22211 0          003568899999999977765 4489


Q ss_pred             EEEEec
Q 014005          350 LKVFRY  355 (432)
Q Consensus       350 i~iwd~  355 (432)
                      |..||.
T Consensus       248 i~~~d~  253 (299)
T 2z2n_A          248 IGRLTS  253 (299)
T ss_dssp             EEEEET
T ss_pred             EEEECC
Confidence            999998

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.43  E-value=1.1e-10  Score=103.54  Aligned_cols=231  Identities=9%  Similarity=0.052  Sum_probs=149.9

Q ss_pred             cEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005           34 IVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (432)
Q Consensus        34 ~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  112 (432)
                      ---+..|+|++ .++++...++.|..||.++++.                            ..+ ...           
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~----------------------------~~~-~~~-----------   53 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV----------------------------QRV-TMD-----------   53 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----------------------------EEE-ECS-----------
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE----------------------------EEE-eCC-----------
Confidence            34578899954 5566666788999999887542                            111 122           


Q ss_pred             hcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                       ..+.++++  +++++++++ . ++.|.+||..+++...+.......         ....+.++++++++.+.+......
T Consensus        54 -~~~~~i~~--~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~---------~~~~~~di~~d~dG~l~~~~~~~~  119 (297)
T 3g4e_A           54 -APVSSVAL--RQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDK---------KNNRFNDGKVDPAGRYFAGTMAEE  119 (297)
T ss_dssp             -SCEEEEEE--BTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTC---------SSEEEEEEEECTTSCEEEEEEECC
T ss_pred             -CceEEEEE--CCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCC---------CCCCCCCEEECCCCCEEEecCCcc
Confidence             67889999  899985544 4 567999999888765554332111         114567788999988555432210


Q ss_pred             -------cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCC-CCCcee--eEeecCC
Q 014005          193 -------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLE-ISDQCF--NIVDMKP  260 (432)
Q Consensus       193 -------~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~-~~~~~~--~~~~~~~  260 (432)
                             ...-.+|.+...  ++....  .......+.++|+|+++.+..+  .++.|..||++ ..+...  +.+    
T Consensus       120 ~~~~~~~~~~~~l~~~d~~--g~~~~~--~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~----  191 (297)
T 3g4e_A          120 TAPAVLERHQGALYSLFPD--HHVKKY--FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV----  191 (297)
T ss_dssp             SBTTBCCTTCEEEEEECTT--SCEEEE--EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE----
T ss_pred             cccccccCCCcEEEEEECC--CCEEEE--eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE----
Confidence                   123455555422  122222  2233457899999999977655  68899999974 133221  111    


Q ss_pred             CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc-CCC
Q 014005          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDG  339 (432)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s-~dg  339 (432)
                      ..+..+...+..++++++| ++.++...++.|..||..+++.    +..+..+             ...+++++|. ||+
T Consensus       192 ~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~----~~~i~~p-------------~~~~t~~~f~g~d~  253 (297)
T 3g4e_A          192 YKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKR----LQTVKLP-------------VDKTTSCCFGGKNY  253 (297)
T ss_dssp             EECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCE----EEEEECS-------------SSBEEEEEEESGGG
T ss_pred             EECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceE----EEEEECC-------------CCCceEEEEeCCCC
Confidence            0112334567899999999 8888888888999999987775    4566552             3578999998 887


Q ss_pred             CEEEE
Q 014005          340 QHLLS  344 (432)
Q Consensus       340 ~~l~s  344 (432)
                      +.|..
T Consensus       254 ~~L~v  258 (297)
T 3g4e_A          254 SEMYV  258 (297)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            76544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.42  E-value=3.6e-11  Score=105.25  Aligned_cols=195  Identities=12%  Similarity=0.099  Sum_probs=138.7

Q ss_pred             CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEE
Q 014005           43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC  122 (432)
Q Consensus        43 ~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~  122 (432)
                      .+++|++++.++.|.+||.++++.+                           .++..+.           ...+.++.+ 
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~---------------------------w~~~~~~-----------~~~~~~~~~-   44 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIV---------------------------WEYPLEK-----------GWECNSVAA-   44 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEE---------------------------EEEECCT-----------TCCCCEEEE-
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEE---------------------------EEeCCCc-----------cCCCcCeEE-
Confidence            4688999999999999999887643                           4555443           025778888 


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeec
Q 014005          123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG  202 (432)
Q Consensus       123 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~  202 (432)
                       +|+|++++  +.++.|..||. +++.                                                +|.+.
T Consensus        45 -~pdG~ilv--s~~~~V~~~d~-~G~~------------------------------------------------~W~~~   72 (276)
T 3no2_A           45 -TKAGEILF--SYSKGAKMITR-DGRE------------------------------------------------LWNIA   72 (276)
T ss_dssp             -CTTSCEEE--ECBSEEEEECT-TSCE------------------------------------------------EEEEE
T ss_pred             -CCCCCEEE--eCCCCEEEECC-CCCE------------------------------------------------EEEEc
Confidence             89999888  34678999987 5541                                                33332


Q ss_pred             ccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCC
Q 014005          203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  280 (432)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  280 (432)
                                  ......+.++.+.++|+.+++. . ++.+..+|.+  ++.+..+..... ...+......+++.+++ 
T Consensus        73 ------------~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~~-~~~~~~~~~~v~~~~~G-  136 (276)
T 3no2_A           73 ------------APAGCEMQTARILPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFETG-IERPHAQFRQINKNKKG-  136 (276)
T ss_dssp             ------------CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECCS-CSSGGGSCSCCEECTTS-
T ss_pred             ------------CCCCccccccEECCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccCC-CCcccccccCceECCCC-
Confidence                        1122356788899999999987 5 7777777765  666665543221 12222345567889999 


Q ss_pred             cEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec---C
Q 014005          281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY---E  356 (432)
Q Consensus       281 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~---~  356 (432)
                      +++++...++.|..||.. |+.    +..+..              ...+.++.+.++|.+++++.+ ++|..+|.   +
T Consensus       137 ~~lv~~~~~~~v~~~d~~-G~~----~w~~~~--------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~  197 (276)
T 3no2_A          137 NYLVPLFATSEVREIAPN-GQL----LNSVKL--------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR  197 (276)
T ss_dssp             CEEEEETTTTEEEEECTT-SCE----EEEEEC--------------SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred             CEEEEecCCCEEEEECCC-CCE----EEEEEC--------------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence            999999999999999987 876    456655              235667788999999998765 78999999   4


Q ss_pred             cceeEee
Q 014005          357 PVMTLSF  363 (432)
Q Consensus       357 ~~~~~~~  363 (432)
                      .+.++..
T Consensus       198 ~~w~~~~  204 (276)
T 3no2_A          198 IVRRVNA  204 (276)
T ss_dssp             EEEEEEG
T ss_pred             EEEEecC
Confidence            5555553

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.41  E-value=2.8e-10  Score=109.47  Aligned_cols=260  Identities=12%  Similarity=0.028  Sum_probs=160.1

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEec--CCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      .....+..+.|+|+|++|++++.|+.|.+||+.  +.+                           .+.++...       
T Consensus       194 ~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~---------------------------~v~~i~~G-------  239 (567)
T 1qks_A          194 DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT---------------------------TVAEIKIG-------  239 (567)
T ss_dssp             ECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC---------------------------EEEEEECC-------
T ss_pred             eCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc---------------------------EeEEEecC-------
Confidence            334567899999999999999999999999985  433                           22334332       


Q ss_pred             chhhhhcceeEEEEEEc----CCCCEEEEEe-CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005          108 KSLEIEEKINRVRWCAA----PNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s----~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  182 (432)
                            .....++|  +    |||++++++. .++.|.++|..+.+........... +.. ........+..+..++++
T Consensus       240 ------~~P~~ia~--s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~-~~~-~~~~p~~rva~i~~s~~~  309 (567)
T 1qks_A          240 ------SEARSIET--SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT-YDE-QEYHPEPRVAAILASHYR  309 (567)
T ss_dssp             ------SEEEEEEE--CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC-TTT-CCEESCCCEEEEEECSSS
T ss_pred             ------CCCceeEE--ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc-ccc-ccccCCCceEEEEEcCCC
Confidence                  33568899  8    6999888775 4599999998887644432221100 000 000001234455556654


Q ss_pred             cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeec-C
Q 014005          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDM-K  259 (432)
Q Consensus       183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~-~  259 (432)
                      ..++... ...|.|.+.|...... ..+..+  ........+.|+|++++++++  .++.|.++|.. +++....++. .
T Consensus       310 ~~~vv~~-~~~g~v~~vd~~~~~~-~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~-t~kl~~~i~vgg  384 (567)
T 1qks_A          310 PEFIVNV-KETGKILLVDYTDLNN-LKTTEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTK-EGKLVAIEDTGG  384 (567)
T ss_dssp             SEEEEEE-TTTTEEEEEETTCSSE-EEEEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEEEEECSS
T ss_pred             CEEEEEe-cCCCeEEEEecCCCcc-ceeeee--eccccccCceECCCCCEEEEEeCCCCeEEEEECC-CCcEEEEEeccC
Confidence            4332221 2268888888763211 112222  234467789999999998776  68999999999 6666665532 1


Q ss_pred             CCCcCCCCc-ceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccc---cccceeecccccccCCccceeeeecceeEEE
Q 014005          260 PSNMDDLTE-VITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALC---DHSARILRDAAESHGSKSFFTEIIASISDIK  334 (432)
Q Consensus       260 ~~~~~~~~~-~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~---~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~  334 (432)
                      .   ..|.+ .++ + ++|++..+++++. .++.|.++|..+++..   .+.++.+...             ...-..++
T Consensus       385 ~---~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-------------g~g~~~i~  446 (567)
T 1qks_A          385 Q---TPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-------------GGGSLFIK  446 (567)
T ss_dssp             S---SBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-------------CSCCCCEE
T ss_pred             c---CCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-------------CCCCEEEE
Confidence            1   23432 222 2 6888535666554 5689999999873311   1124554431             12224478


Q ss_pred             EcCCCCEEEEee--------CCeEEEEecC
Q 014005          335 FANDGQHLLSRD--------YMNLKVFRYE  356 (432)
Q Consensus       335 ~s~dg~~l~s~~--------~~~i~iwd~~  356 (432)
                      .+|++++|....        .+.|.++|+.
T Consensus       447 ~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~  476 (567)
T 1qks_A          447 THPNSQYLYVDATLNPEAEISGSVAVFDIK  476 (567)
T ss_dssp             CCTTCSEEEEECTTCSSHHHHTCEEEEEGG
T ss_pred             eCCCCCeEEEecCCCCCcccCceEEEEECC
Confidence            899999988744        2599999993

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.40  E-value=2.7e-10  Score=105.66  Aligned_cols=257  Identities=9%  Similarity=0.007  Sum_probs=156.8

Q ss_pred             CcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  112 (432)
                      .....|+|+++|+++++...++.|++||.+++...                           ..... .           
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~---------------------------~~~~~-~-----------  171 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT---------------------------TVHPG-F-----------  171 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE---------------------------EEEET-C-----------
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE---------------------------Eeecc-C-----------
Confidence            46789999999998888777899999999876422                           11222 2           


Q ss_pred             hcceeEEEEEEcCCCCEEEEEeCCC--eEEEEEccCccee-eeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          113 EEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                       .... ++|  +++++.|+++..++  .|.+++...+... .+......          .......++++|+...++...
T Consensus       172 -~~~~-ia~--~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~----------~~~~p~~iav~p~~g~lyv~d  237 (409)
T 3hrp_A          172 -KGGK-PAV--TKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGST----------FSGKIGAVALDETEEWLYFVD  237 (409)
T ss_dssp             -CBCB-CEE--CTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTT----------SCSCCCBCEECTTSSEEEEEC
T ss_pred             -CCCc-eeE--ecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccch----------hcCCcEEEEEeCCCCeEEEEE
Confidence             2334 889  89999988887765  7888888765432 22111110          014567889999555555544


Q ss_pred             eeccceEEEEeecccccceeeEE--e-ecCCCCCe-e-EEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecC-CC
Q 014005          190 WTENMATKIANVGNSVHARCQKV--Y-PHAHDFNI-N-SISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMK-PS  261 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~--~-~~~~~~~i-~-~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~-~~  261 (432)
                      .  ++.|..||....   .....  . ..+....- . .++|+|+ +.++++- .++.|+.|+.+  +......... ..
T Consensus       238 ~--~~~I~~~d~~~~---~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~--g~~~~~~g~~~~~  310 (409)
T 3hrp_A          238 S--NKNFGRFNVKTQ---EVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD--GECEWFCGSATQK  310 (409)
T ss_dssp             T--TCEEEEEETTTC---CEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECTTCC
T ss_pred             C--CCcEEEEECCCC---CEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC--CCEEEEEeCCCCC
Confidence            3  778999998732   22111  0 12222222 3 9999996 5444455 78899999987  2222221100 00


Q ss_pred             Cc------CCCCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeecccccccCCcc--ceeeeecceeE
Q 014005          262 NM------DDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKS--FFTEIIASISD  332 (432)
Q Consensus       262 ~~------~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~--~~~~~~~~v~~  332 (432)
                      ..      ...-.....++++|++ +++++-. .++.|+.||+.++..     ..+.++........  ...........
T Consensus       311 g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v-----~~~~g~~~~~g~~~g~~~~~~~~~P~g  384 (409)
T 3hrp_A          311 TVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYV-----STVAGQVDVASQIDGTPLEATFNYPYD  384 (409)
T ss_dssp             SCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEE-----EEEEECTTCBSCCCBSTTTCCBSSEEE
T ss_pred             CcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEE-----EEEeCCCCCCCcCCCChhceEeCCceE
Confidence            00      0112357899999999 8777777 789999999877763     44544211100000  00001246789


Q ss_pred             EEEcCCCCEEEEeeC-CeEEEEec
Q 014005          333 IKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       333 ~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      ++++++|.++++... ++|+.+++
T Consensus       385 iavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          385 ICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEcCCCCEEEEECCCCeEEEEEe
Confidence            999999877777544 78877654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.39  E-value=2.8e-10  Score=113.70  Aligned_cols=212  Identities=10%  Similarity=0.005  Sum_probs=134.3

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCC-----eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                      ..+..++|  ||||++|+.+..++     .|++||+.+++.......              ...+..++|+|+++.++.+
T Consensus       125 ~~~~~~~~--SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~--------------~~~~~~~~wspDg~~l~~~  188 (710)
T 2xdw_A          125 VALRGYAF--SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--------------RVKFSCMAWTHDGKGMFYN  188 (710)
T ss_dssp             EEEEEEEE--CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--------------EECSCCEEECTTSSEEEEE
T ss_pred             EEEEEEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc--------------CcccceEEEEeCCCEEEEE
Confidence            46788999  99999998875543     899999999875442111              1235678999999988877


Q ss_pred             eeec--------------cceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-c-----CCeEEEEeCC
Q 014005          189 EWTE--------------NMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-D-----DLRINLWNLE  247 (432)
Q Consensus       189 ~~~~--------------~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~-----d~~i~lwd~~  247 (432)
                      ....              ...|.+|++.... ......+. ..+...+..+.|+|+|++|+.+ .     +..|++||+.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~-~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~  267 (710)
T 2xdw_A          189 AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ-SEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ  267 (710)
T ss_dssp             ECCCCSSCCSSSCCCCCCCCEEEEEETTSCG-GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred             EECCccccccccccccCCCCEEEEEECCCCc-ccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECc
Confidence            6521              1238999987432 11122221 2345568899999999998876 4     5689999998


Q ss_pred             C------CCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC----CeEEEEEccccccccccceeeccccccc
Q 014005          248 I------SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESH  317 (432)
Q Consensus       248 ~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~h~~~~  317 (432)
                      .      .......+       ..+...+.. .|+|+| ..|+..+.+    +.|.+||+.++...  ..+.+..|..  
T Consensus       268 ~~~~~~~~~~~~~~l-------~~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~~--  334 (710)
T 2xdw_A          268 QESNGITGILKWVKL-------IDNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTDPEES--KWKVLVPEHE--  334 (710)
T ss_dssp             GSSSSSCSSCCCEEE-------ECSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTSCCGG--GCEEEECCCS--
T ss_pred             ccccccCCccceEEe-------eCCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCCCCcc--cceeccCCCC--
Confidence            3      11123333       334444444 488888 655555432    36999999876420  0234443300  


Q ss_pred             CCccceeeeecceeEEEEcCCCCEEEEe-eCC--eEEEEec---CcceeEeec
Q 014005          318 GSKSFFTEIIASISDIKFANDGQHLLSR-DYM--NLKVFRY---EPVMTLSFC  364 (432)
Q Consensus       318 ~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~--~i~iwd~---~~~~~~~~~  364 (432)
                               ...+..++|++++.++++. .++  .|++||+   +.+..+..+
T Consensus       335 ---------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~  378 (710)
T 2xdw_A          335 ---------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE  378 (710)
T ss_dssp             ---------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC
T ss_pred             ---------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC
Confidence                     1267889999877777776 445  5666776   334555544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.38  E-value=1.3e-09  Score=96.37  Aligned_cols=233  Identities=9%  Similarity=0.002  Sum_probs=157.0

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee--cCCccccccch
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEFDYLKS  109 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~h~~~~~~~~~  109 (432)
                      ...+.+++++++|.++++...++.|..|+.+...                             ..+.  ...        
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-----------------------------~~~~~~~~~--------   98 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKKGII-----------------------------KEYTLPNPD--------   98 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-----------------------------EEEECSSTT--------
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCCCcE-----------------------------EEEeCCCcC--------
Confidence            4678999999999988887778889999875211                             1111  122        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                          ..+.++++  .+++.++++...++.|..||. +++...... ...           ...+..+++++++...+...
T Consensus        99 ----~~~~~i~~--~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~-~~~-----------~~~~~~i~~~~~g~l~v~~~  159 (299)
T 2z2n_A           99 ----SAPYGITE--GPNGDIWFTEMNGNRIGRITD-DGKIREYEL-PNK-----------GSYPSFITLGSDNALWFTEN  159 (299)
T ss_dssp             ----CCEEEEEE--CTTSCEEEEETTTTEEEEECT-TCCEEEEEC-SST-----------TCCEEEEEECTTSCEEEEET
T ss_pred             ----CCceeeEE--CCCCCEEEEecCCceEEEECC-CCCEEEecC-CCC-----------CCCCceEEEcCCCCEEEEeC
Confidence                56788999  889988887777889999998 554333211 111           13567788888886655443


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      .  ++.+..+|..    ++............+..++++++++..++. .++.|..||..  +.... +.     ...+..
T Consensus       160 ~--~~~i~~~~~~----g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~-~~-----~~~~~~  225 (299)
T 2z2n_A          160 Q--NNAIGRITES----GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS--GEITE-FK-----IPTPNA  225 (299)
T ss_dssp             T--TTEEEEECTT----CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT--CCEEE-EE-----CSSTTC
T ss_pred             C--CCEEEEEcCC----CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCC--CcEEE-EE-----CCCCCC
Confidence            3  5678888872    122222113345678899999999877777 78899999984  33222 21     133456


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeec--ccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR--DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~  346 (432)
                      .+.++++++++ +++++...++.|..||. +++.     ..+.  .+             ...+.++++ ++|++.++..
T Consensus       226 ~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~-----~~~~~~~~-------------~~~~~~i~~-~~g~l~v~~~  284 (299)
T 2z2n_A          226 RPHAITAGAGI-DLWFTEWGANKIGRLTS-NNII-----EEYPIQIK-------------SAEPHGICF-DGETIWFAME  284 (299)
T ss_dssp             CEEEEEECSTT-CEEEEETTTTEEEEEET-TTEE-----EEEECSSS-------------SCCEEEEEE-CSSCEEEEET
T ss_pred             CceeEEECCCC-CEEEeccCCceEEEECC-CCce-----EEEeCCCC-------------CCccceEEe-cCCCEEEEec
Confidence            78999999998 87776667889999998 4442     3332  21             356889999 9998877754


Q ss_pred             CCeEEEEec
Q 014005          347 YMNLKVFRY  355 (432)
Q Consensus       347 ~~~i~iwd~  355 (432)
                      .+.+..+|.
T Consensus       285 ~~~l~~~~~  293 (299)
T 2z2n_A          285 CDKIGKLTL  293 (299)
T ss_dssp             TTEEEEEEE
T ss_pred             CCcEEEEEc
Confidence            567777765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.38  E-value=7.5e-11  Score=104.57  Aligned_cols=202  Identities=8%  Similarity=-0.050  Sum_probs=136.1

Q ss_pred             cceeEEEEEEcCCCC-EEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      ....+++|  +|+++ +++++..++.|..|+..++ ...+..   +.           ..+..+++++++..++....  
T Consensus        28 ~~~eg~~~--d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~---~~-----------~~~~~l~~~~dg~l~v~~~~--   88 (296)
T 3e5z_A           28 TWTEGPVY--VPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMH---PS-----------HHQNGHCLNKQGHLIACSHG--   88 (296)
T ss_dssp             SSEEEEEE--EGGGTEEEEEEGGGTEEEEEETTSC-EEEEES---SC-----------SSEEEEEECTTCCEEEEETT--
T ss_pred             ccccCCeE--eCCCCEEEEEeCCCCEEEEEECCCC-eEEEEC---CC-----------CCcceeeECCCCcEEEEecC--
Confidence            56778999  88998 7778888999999999877 433322   12           45778999999987665544  


Q ss_pred             cceEEEEeecccccceeeEEee--c-CCCCCeeEEEeCCCCCEEEE----E-c-------------CCeEEEEeCCCCCc
Q 014005          193 NMATKIANVGNSVHARCQKVYP--H-AHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQ  251 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~--~-~~~~~i~~~~~~~~~~~l~~----~-~-------------d~~i~lwd~~~~~~  251 (432)
                      ++.|.+||..   +++......  . .....++.++++|+|+++++    | .             .+.|..++..  +.
T Consensus        89 ~~~i~~~d~~---~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~  163 (296)
T 3e5z_A           89 LRRLERQREP---GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT  163 (296)
T ss_dssp             TTEEEEECST---TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC
T ss_pred             CCeEEEEcCC---CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CC
Confidence            5789999986   333332220  1 11235778999999998886    3 1             2345545444  33


Q ss_pred             eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcc-cccc-ccccceeecccccccCCccceeeeecc
Q 014005          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSAL-CDHSARILRDAAESHGSKSFFTEIIAS  329 (432)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~~  329 (432)
                       +..+       ..+....+.++|+|++ +.+++.+.++.|.+||+. +++. ..  ...+..+             ...
T Consensus       164 -~~~~-------~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~--~~~~~~~-------------~~~  219 (296)
T 3e5z_A          164 -LSAP-------IRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQ--GVHFTVE-------------PGK  219 (296)
T ss_dssp             -EEEE-------ECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEE--EEEECCS-------------SSC
T ss_pred             -EEEe-------ecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCC--CeEeeCC-------------CCC
Confidence             2222       3445567899999999 777777788999999987 3432 10  1222211             345


Q ss_pred             eeEEEEcCCCCEEEEeeCCeEEEEec--CcceeEeec
Q 014005          330 ISDIKFANDGQHLLSRDYMNLKVFRY--EPVMTLSFC  364 (432)
Q Consensus       330 v~~~~~s~dg~~l~s~~~~~i~iwd~--~~~~~~~~~  364 (432)
                      +.+++++++|+++++. .+.|.+||.  +.+..+..+
T Consensus       220 p~~i~~d~~G~l~v~~-~~~v~~~~~~g~~~~~~~~~  255 (296)
T 3e5z_A          220 TDGLRVDAGGLIWASA-GDGVHVLTPDGDELGRVLTP  255 (296)
T ss_dssp             CCSEEEBTTSCEEEEE-TTEEEEECTTSCEEEEEECS
T ss_pred             CCeEEECCCCCEEEEc-CCeEEEECCCCCEEEEEECC
Confidence            6789999999987777 789999999  455555444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.35  E-value=5.3e-09  Score=92.46  Aligned_cols=237  Identities=6%  Similarity=-0.060  Sum_probs=159.2

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ...+.++.++++|++.++...++.|.+|+.. ++..                         . ..+..+.          
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-------------------------~-~~~~~~~----------   61 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-------------------------E-FEVPTPD----------   61 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-------------------------E-EECSSTT----------
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-------------------------E-EECCCCC----------
Confidence            4578999999999988877778899999976 3311                         0 0111222          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                        ..+.++++  .+++.++++...++.|..+|.. ++..... .....           ..+..+++.+++...+.... 
T Consensus        62 --~~~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~-~~~~~-----------~~~~~i~~~~~g~l~v~~~~-  123 (300)
T 2qc5_A           62 --AKVMCLIV--SSLGDIWFTENGANKIGKLSKK-GGFTEYP-LPQPD-----------SGPYGITEGLNGDIWFTQLN-  123 (300)
T ss_dssp             --CCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEE-CSSTT-----------CCEEEEEECSTTCEEEEETT-
T ss_pred             --CcceeEEE--CCCCCEEEEecCCCeEEEECCC-CCeEEec-CCCCC-----------CCCccceECCCCCEEEEccC-
Confidence              56788999  8889877777667899999987 5543221 11111           35667788888776665443 


Q ss_pred             ccceEEEEeecccccceeeE-EeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          192 ENMATKIANVGNSVHARCQK-VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                       ++.+..++...    +... .+ ......+..+++.++++..++. .++.|..+|..  +.... +.     .......
T Consensus       124 -~~~i~~~~~~g----~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--g~~~~-~~-----~~~~~~~  189 (300)
T 2qc5_A          124 -GDRIGKLTADG----TIYEYDL-PNKGSYPAFITLGSDNALWFTENQNNSIGRITNT--GKLEE-YP-----LPTNAAA  189 (300)
T ss_dssp             -TTEEEEECTTS----CEEEEEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT--CCEEE-EE-----CSSTTCC
T ss_pred             -CCeEEEECCCC----CEEEccC-CCCCCCceeEEECCCCCEEEEecCCCeEEEECCC--CcEEE-ee-----CCCCCCC
Confidence             56777777651    1211 12 3345678999999999976666 68899999985  33322 21     1233456


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CC
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM  348 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~  348 (432)
                      +..+++++++ ++.++....+.|.+||. +++..   ...+..+             ...+.+++++++|++.++.. .+
T Consensus       190 ~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~---~~~~~~~-------------~~~~~~i~~d~~g~l~v~~~~~~  251 (300)
T 2qc5_A          190 PVGITSGNDG-ALWFVEIMGNKIGRITT-TGEIS---EYDIPTP-------------NARPHAITAGKNSEIWFTEWGAN  251 (300)
T ss_dssp             EEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE---EEECSST-------------TCCEEEEEECSTTCEEEEETTTT
T ss_pred             cceEEECCCC-CEEEEccCCCEEEEEcC-CCcEE---EEECCCC-------------CCCceEEEECCCCCEEEeccCCC
Confidence            8999999998 87777667788999998 44431   1111111             35678999999998777653 48


Q ss_pred             eEEEEec
Q 014005          349 NLKVFRY  355 (432)
Q Consensus       349 ~i~iwd~  355 (432)
                      .|..||.
T Consensus       252 ~i~~~~~  258 (300)
T 2qc5_A          252 QIGRITN  258 (300)
T ss_dssp             EEEEECT
T ss_pred             eEEEECC
Confidence            9999998

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.34  E-value=8.5e-10  Score=106.10  Aligned_cols=233  Identities=9%  Similarity=0.074  Sum_probs=154.6

Q ss_pred             EcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEE
Q 014005           40 FDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV  119 (432)
Q Consensus        40 fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l  119 (432)
                      .+|.+.++++...+++|.++|..+++.+                           .++...             ..+..+
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~---------------------------~~i~~g-------------~~p~~v  202 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTYEIK---------------------------TVLDTG-------------YAVHIS  202 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEE---------------------------EEEECS-------------SCEEEE
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCCeEE---------------------------EEEeCC-------------CCccce
Confidence            3355567778888999999999887643                           344322             346688


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcc--CcceeeeeecCCCCccccccccccccccccccCC----CCCcceecceeecc
Q 014005          120 RWCAAPNGSMFILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP----PSFAHGYHLEWTEN  193 (432)
Q Consensus       120 ~~~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~  193 (432)
                      .|  +|||+++++++.|+.|.+||+.  +.+..  ......            .....++++    |++++++.+... +
T Consensus       203 ~~--SpDGr~lyv~~~dg~V~viD~~~~t~~~v--~~i~~G------------~~P~~ia~s~~~~pDGk~l~v~n~~-~  265 (567)
T 1qks_A          203 RL--SASGRYLFVIGRDGKVNMIDLWMKEPTTV--AEIKIG------------SEARSIETSKMEGWEDKYAIAGAYW-P  265 (567)
T ss_dssp             EE--CTTSCEEEEEETTSEEEEEETTSSSCCEE--EEEECC------------SEEEEEEECCSTTCTTTEEEEEEEE-T
T ss_pred             EE--CCCCCEEEEEcCCCeEEEEECCCCCCcEe--EEEecC------------CCCceeEEccccCCCCCEEEEEEcc-C
Confidence            99  9999999999999999999995  54432  222211            235678899    699988887652 5


Q ss_pred             ceEEEEeecccccceeeEEeecC---------C-CCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCC
Q 014005          194 MATKIANVGNSVHARCQKVYPHA---------H-DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPS  261 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~---------~-~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~  261 (432)
                      +.+.++|..   +.+.++.+...         | ...+..+..++++..++..  .+|.|.++|.. ....+.+..+   
T Consensus       266 ~~v~ViD~~---t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~-~~~~~~v~~i---  338 (567)
T 1qks_A          266 PQYVIMDGE---TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT-DLNNLKTTEI---  338 (567)
T ss_dssp             TEEEEEETT---TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT-CSSEEEEEEE---
T ss_pred             CeEEEEECC---CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecC-CCccceeeee---
Confidence            789999977   55666655211         1 2267788899987776655  78999999998 3333332211   


Q ss_pred             CcCCCCcceEEEEEcCCCCcEEEEE-eCCCeEEEEEccccccccccceeecc-cccccCCccceeeeecceeEEE-EcCC
Q 014005          262 NMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRD-AAESHGSKSFFTEIIASISDIK-FAND  338 (432)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~~v~~~~-~s~d  338 (432)
                         ........+.|+|++ ++|+++ ..++.|.++|+.++++    ...+.- -. .|        |.+  .... ++|+
T Consensus       339 ---~~~~~~~d~~~~pdg-r~~~va~~~sn~V~ViD~~t~kl----~~~i~vgg~-~P--------hpg--~g~~~~~p~  399 (567)
T 1qks_A          339 ---SAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKEGKL----VAIEDTGGQ-TP--------HPG--RGANFVHPT  399 (567)
T ss_dssp             ---ECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTTEE----EEEEECSSS-SB--------CCT--TCEEEEETT
T ss_pred             ---eccccccCceECCCC-CEEEEEeCCCCeEEEEECCCCcE----EEEEeccCc-CC--------CCc--cceeeECCC
Confidence               122346788999999 666554 4678999999998875    233221 00 00        011  1222 5887


Q ss_pred             -CCEEEEe--eCCeEEEEec
Q 014005          339 -GQHLLSR--DYMNLKVFRY  355 (432)
Q Consensus       339 -g~~l~s~--~~~~i~iwd~  355 (432)
                       |...+++  +++.|.++|.
T Consensus       400 ~g~v~~t~~~g~~~Vsvid~  419 (567)
T 1qks_A          400 FGPVWATSHMGDDSVALIGT  419 (567)
T ss_dssp             TEEEEEEEBSSSSEEEEEEC
T ss_pred             CCcEEEeCCCCCCeEEEecC
Confidence             5555555  3489999998

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.33  E-value=3.8e-10  Score=112.47  Aligned_cols=201  Identities=9%  Similarity=0.005  Sum_probs=124.9

Q ss_pred             cceeEEEEEEcCCCCEEEEE-----eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          114 EKINRVRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                      ..+..++|  ||||++|+.+     +.+..|++||+.+++........             ......++|+|+++.++..
T Consensus       121 ~~~~~~~~--SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~-------------~~~~~~~~wspDg~~l~~~  185 (695)
T 2bkl_A          121 VSLGTWAV--SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE-------------GGKYATPKWTPDSKGFYYE  185 (695)
T ss_dssp             EEEEEEEE--CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS-------------CCTTCCCEECTTSSEEEEE
T ss_pred             EEEEEEEE--CCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC-------------cccccceEEecCCCEEEEE
Confidence            57889999  9999999844     44568999999988743110110             0122678999999988877


Q ss_pred             eeec-----------cceEEEEeecccccc-eeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC----eEEEEeCCCCCc
Q 014005          189 EWTE-----------NMATKIANVGNSVHA-RCQKVYPHAHDFNINSISNNSDCETFVSA-DDL----RINLWNLEISDQ  251 (432)
Q Consensus       189 ~~~~-----------~~~v~i~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~----~i~lwd~~~~~~  251 (432)
                      ....           ...|++|++...... ..+... ..+...+..+.|+|+|++++.+ .++    .|++||.. .+.
T Consensus       186 ~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~-~~~  263 (695)
T 2bkl_A          186 WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER-TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG-EKD  263 (695)
T ss_dssp             ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC-CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT-CSS
T ss_pred             EecCCCCCccccCCCCCEEEEEECCCCchhceEEEec-CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC-CCc
Confidence            6511           224999998744221 222222 3455678899999999998876 554    56666654 233


Q ss_pred             eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe---CCCeEEEEEccccccccccceeecccccccCCccceeeeec
Q 014005          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA  328 (432)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  328 (432)
                       ...+       ..+...+....+ +++ .+++.+.   .++.|.+||+.++... . ...+..|.           ...
T Consensus       264 -~~~l-------~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~-~-~~~l~~~~-----------~~~  320 (695)
T 2bkl_A          264 -FRLL-------VKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARA-S-WKEIVPED-----------SSA  320 (695)
T ss_dssp             -CEEE-------EECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGG-G-CEEEECCC-----------SSC
T ss_pred             -eEEe-------ecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCcc-C-CeEEecCC-----------CCC
Confidence             2322       333344555556 677 5444443   2578999999876420 0 12332210           024


Q ss_pred             ceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          329 SISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       329 ~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                      .+..++|+ ++.++++. .++..++|.+
T Consensus       321 ~l~~~~~~-~~~lv~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          321 SLLSVSIV-GGHLSLEYLKDATSEVRVA  347 (695)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             eEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            57788888 66677775 4577777765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.32  E-value=2.9e-10  Score=99.17  Aligned_cols=198  Identities=6%  Similarity=-0.090  Sum_probs=136.3

Q ss_pred             CcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee-cCCccccccchhh
Q 014005           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLE  111 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h~~~~~~~~~~~  111 (432)
                      ..+.+++++++|+++++.. ++.|.+||.++....                            .+. ...          
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~----------------------------~~~~~~~----------  107 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT----------------------------VLPFDGL----------  107 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE----------------------------ECCCCSC----------
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe----------------------------eeecCCc----------
Confidence            4678899999999766665 889999997664321                            111 111          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                        ..+.++++  +++++++++...++.|.+|+..+......  ....           ......+++++++...++... 
T Consensus       108 --~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~~~-----------~~~p~~i~~~~~g~l~v~~~~-  169 (270)
T 1rwi_B          108 --NYPEGLAV--DTQGAVYVADRGNNRVVKLAAGSKTQTVL--PFTG-----------LNDPDGVAVDNSGNVYVTDTD-  169 (270)
T ss_dssp             --SSEEEEEE--CTTCCEEEEEGGGTEEEEECTTCCSCEEC--CCCS-----------CCSCCCEEECTTCCEEEEEGG-
T ss_pred             --CCCcceEE--CCCCCEEEEECCCCEEEEEECCCceeEee--cccc-----------CCCceeEEEeCCCCEEEEECC-
Confidence              45788999  88998777777788999997654432211  1111           135677888888875555444 


Q ss_pred             ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                       ++.|.+|+...   ....... ..+...+..++++++|..+++. .++.|.+||.. ...... .      ...+...+
T Consensus       170 -~~~i~~~~~~~---~~~~~~~-~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~-~------~~~~~~~p  236 (270)
T 1rwi_B          170 -NNRVVKLEAES---NNQVVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG-STTSTV-L------PFTGLNTP  236 (270)
T ss_dssp             -GTEEEEECTTT---CCEEECC-CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT-CSCCEE-C------CCCSCSCE
T ss_pred             -CCEEEEEecCC---CceEeec-ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC-CCccee-e------ccCCCCCc
Confidence             67899998763   2222222 2333678999999999777777 78999999987 332222 1      12233568


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccccc
Q 014005          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA  301 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~  301 (432)
                      .+++++|++ +++++...++.|+++++...+
T Consensus       237 ~~i~~~~~g-~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          237 LAVAVDSDR-TVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EEEEECTTC-CEEEEEGGGTEEEEECCCGGG
T ss_pred             eeEEECCCC-CEEEEECCCCEEEEEcCCCcc
Confidence            999999999 888888899999999988654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.30  E-value=4.3e-09  Score=94.59  Aligned_cols=228  Identities=14%  Similarity=0.003  Sum_probs=143.1

Q ss_pred             EEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           35 VSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        35 V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      ..+..|+|+++ ++++...++.|..||.++++.                            ..+. ..            
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~----------------------------~~~~-~~------------   89 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRK----------------------------TVHA-LP------------   89 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE----------------------------EEEE-CS------------
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE----------------------------EEEE-CC------------
Confidence            46789999754 566666788999999877542                            1121 23            


Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee--
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT--  191 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--  191 (432)
                      ..+.++.|  +++++++++. . +.|.+||..+++...+.......         ....+..+.+++++.+.+.....  
T Consensus        90 ~~v~~i~~--~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~---------~~~~~~~i~~d~~G~l~v~~~~~~~  156 (326)
T 2ghs_A           90 FMGSALAK--ISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDL---------PGNRSNDGRMHPSGALWIGTMGRKA  156 (326)
T ss_dssp             SCEEEEEE--EETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTC---------TTEEEEEEEECTTSCEEEEEEETTC
T ss_pred             CcceEEEE--eCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCC---------CCCCCCCEEECCCCCEEEEeCCCcC
Confidence            56889999  7788776654 4 45999999888765543321100         11457788899998865543210  


Q ss_pred             ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCC-CCC-ce--eeEeecCCCCcCC
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLE-ISD-QC--FNIVDMKPSNMDD  265 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~-~~~-~~--~~~~~~~~~~~~~  265 (432)
                      ......+|.+.   .++.....  ......+.++|+|+++.++.+  .++.|.+||++ .++ ..  .+.+.    .+..
T Consensus       157 ~~~~~~l~~~~---~g~~~~~~--~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~----~~~~  227 (326)
T 2ghs_A          157 ETGAGSIYHVA---KGKVTKLF--ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI----DSTG  227 (326)
T ss_dssp             CTTCEEEEEEE---TTEEEEEE--EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE----ECTT
T ss_pred             CCCceEEEEEe---CCcEEEee--CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE----ECCC
Confidence            01233444443   12222221  223457789999999877655  57899999985 123 21  11110    1122


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc-CCCCEEEE
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDGQHLLS  344 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~s  344 (432)
                      ....+..++++++| ++.++...++.|.+||. +++.    +..+..+             ...+.+++|+ ++++.|..
T Consensus       228 ~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~-~g~~----~~~i~~~-------------~~~~~~~af~g~d~~~L~v  288 (326)
T 2ghs_A          228 IKGGMDGSVCDAEG-HIWNARWGEGAVDRYDT-DGNH----IARYEVP-------------GKQTTCPAFIGPDASRLLV  288 (326)
T ss_dssp             SSSEEEEEEECTTS-CEEEEEETTTEEEEECT-TCCE----EEEEECS-------------CSBEEEEEEESTTSCEEEE
T ss_pred             CCCCCCeeEECCCC-CEEEEEeCCCEEEEECC-CCCE----EEEEECC-------------CCCcEEEEEecCCCCEEEE
Confidence            34557889999999 87777767789999998 4554    3555542             3568999998 88876654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.28  E-value=1.7e-09  Score=97.36  Aligned_cols=215  Identities=8%  Similarity=-0.075  Sum_probs=138.2

Q ss_pred             CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      .......++++++|+.+++...++.|.+||..+++..                           ..+......       
T Consensus        82 ~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~---------------------------~~i~~g~~~-------  127 (328)
T 3dsm_A           82 GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT---------------------------GYIECPDMD-------  127 (328)
T ss_dssp             CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE---------------------------EEEECTTCC-------
T ss_pred             CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE---------------------------EEEEcCCcc-------
Confidence            3456888999999965555547899999999886532                           222211000       


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEe--CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          111 EIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                      ........+++   .++ .++.+.  .++.|.++|+.+++........              .....+.+++++.+.+..
T Consensus       128 ~~~~~p~~i~~---~~~-~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--------------~~p~~i~~~~dG~l~v~~  189 (328)
T 3dsm_A          128 MESGSTEQMVQ---YGK-YVYVNCWSYQNRILKIDTETDKVVDELTIG--------------IQPTSLVMDKYNKMWTIT  189 (328)
T ss_dssp             TTTCBCCCEEE---ETT-EEEEEECTTCCEEEEEETTTTEEEEEEECS--------------SCBCCCEECTTSEEEEEB
T ss_pred             ccCCCcceEEE---ECC-EEEEEcCCCCCEEEEEECCCCeEEEEEEcC--------------CCccceEEcCCCCEEEEE
Confidence            00024556666   234 444444  4899999999988754433322              234678888988866665


Q ss_pred             eeec--------cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCC
Q 014005          189 EWTE--------NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP  260 (432)
Q Consensus       189 ~~~~--------~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~  260 (432)
                      ....        .+.|.++|..   +.+....+..........++++|+++.+.++.. .|.+||.. +++.....    
T Consensus       190 ~~~~~~~~~~~~~~~v~~id~~---t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~-t~~~~~~~----  260 (328)
T 3dsm_A          190 DGGYEGSPYGYEAPSLYRIDAE---TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVE-ADRVPVRP----  260 (328)
T ss_dssp             CCBCTTCSSCBCCCEEEEEETT---TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETT-CSSCCSSC----
T ss_pred             CCCccCCccccCCceEEEEECC---CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECC-CCceeeee----
Confidence            4410        2689999987   555555552222347899999999999888833 89999998 44432110    


Q ss_pred             CCcCCCCcceEEEEEcCCCCcEEEEE----eCCCeEEEEEccccccccccceeecc
Q 014005          261 SNMDDLTEVITSAEFHPIYCNLLAYS----SSRGFVRLVDMRQSALCDHSARILRD  312 (432)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (432)
                       ...........++++|++..++++.    ..++.|.+||.. ++.    +..+..
T Consensus       261 -~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~----~~~i~~  310 (328)
T 3dsm_A          261 -FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL----IDEFYV  310 (328)
T ss_dssp             -SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE----EEEEEE
T ss_pred             -eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE----EEEEEe
Confidence             0122245688999999553777766    678899999988 775    455543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.27  E-value=4.4e-10  Score=111.82  Aligned_cols=240  Identities=11%  Similarity=0.072  Sum_probs=147.5

Q ss_pred             CCCcEEEEEEcCCCCEEEE-----ecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           31 DVDIVSAIEFDKTGDYLAV-----GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      |...+..++|||||++||.     |+...+|++||+++++..                              ..+.+.  
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~------------------------------~~~~~~--  174 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL------------------------------ETPLKD--  174 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE------------------------------EEEEEE--
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC------------------------------ccccCC--
Confidence            4457889999999999984     444468999999987632                              111100  


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEeCCC-------------eEEEEEccCcce--eeeeecCC-CCcccccccccc
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDK-------------TIKLWKVRDQKV--KKIKEMDH-FPFVSSENTLLA  169 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~-------------~i~iwd~~~~~~--~~~~~~~~-~~~~~~~~~~~~  169 (432)
                              .....++|  + |++.|+.++.+.             .|++|++.++..  ..+..... ++          
T Consensus       175 --------~k~~~~~W--s-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~----------  233 (693)
T 3iuj_A          175 --------VKFSGISW--L-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH----------  233 (693)
T ss_dssp             --------EESCCCEE--E-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC----------
T ss_pred             --------ceeccEEE--e-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC----------
Confidence                    12357889  8 999999888774             399999977653  22322221 12          


Q ss_pred             ccccccccCCCCCcceecceeec--cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEE-EE-c---CCeEE
Q 014005          170 EKNFMNEHNPPSFAHGYHLEWTE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-D---DLRIN  242 (432)
Q Consensus       170 ~~~i~~~~~~~~~~~~~~~~~~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~-~---d~~i~  242 (432)
                       .....+.+++++++++......  .+.+.++|+... .. ....+ ..+....... +++++..|+ .+ .   .+.|.
T Consensus       234 -~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~-~~-~~~~l-~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~  308 (693)
T 3iuj_A          234 -HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE-NA-PLLTV-QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLV  308 (693)
T ss_dssp             -CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST-TC-CCEEE-ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEE
T ss_pred             -eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC-CC-ceEEE-eCCCCceEEE-EeccCCEEEEEECCCCCCCEEE
Confidence             2356788999999886654322  358889988632 11 23333 3444444444 556665554 44 3   36799


Q ss_pred             EEeCCCCCc-eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe-CCC--eEEEEEccccccccccceeecccccccC
Q 014005          243 LWNLEISDQ-CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRG--FVRLVDMRQSALCDHSARILRDAAESHG  318 (432)
Q Consensus       243 lwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~~  318 (432)
                      .+|+..... ..+.+       ..+...+.  .|++++ +.|+... .++  .|++||+..+..     +.+...     
T Consensus       309 ~~d~~~~~~~~~~~l-------~~~~~~~~--~~s~~g-~~lv~~~~~~g~~~l~~~d~~g~~~-----~~l~~p-----  368 (693)
T 3iuj_A          309 TVDAANPGPAHWRDL-------IPERQQVL--TVHSGS-GYLFAEYMVDATARVEQFDYEGKRV-----REVALP-----  368 (693)
T ss_dssp             EEETTSCCGGGCEEE-------ECCCSSCE--EEEEET-TEEEEEEEETTEEEEEEECTTSCEE-----EEECCS-----
T ss_pred             EEeCCCCCccccEEE-------ecCCCCEE--EEEEEC-CEEEEEEEECCeeEEEEEECCCCee-----EEeecC-----
Confidence            999983321 12222       33444444  889988 6565554 454  688999875432     333320     


Q ss_pred             CccceeeeecceeEEEEcCCCCEEEE-eeC----CeEEEEec
Q 014005          319 SKSFFTEIIASISDIKFANDGQHLLS-RDY----MNLKVFRY  355 (432)
Q Consensus       319 ~~~~~~~~~~~v~~~~~s~dg~~l~s-~~~----~~i~iwd~  355 (432)
                             ....+..+.+++++..|+. .+.    ++++.||+
T Consensus       369 -------~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          369 -------GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             -------SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             -------CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence                   0345777788888876654 222    89999998

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.26  E-value=3.4e-09  Score=94.29  Aligned_cols=237  Identities=10%  Similarity=-0.052  Sum_probs=148.9

Q ss_pred             cCCCcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           30 QDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..........|+|+|+ +++++..++.|..|+... +.                            ..+..+.       
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~~----------------------------~~~~~~~-------   85 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-TV----------------------------DVLLDAT-------   85 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-CE----------------------------EEEEESC-------
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-CE----------------------------EEEeCCC-------
Confidence            3455678899999998 567777788999998733 21                            2333344       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec-
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH-  187 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-  187 (432)
                           ..+..+++  +++|+++++...++.|.+|+.. ++...+......         .....+..+++++++...++ 
T Consensus        86 -----~~~~gl~~--d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~---------~~~~~~~~i~~d~dG~l~~td  148 (305)
T 3dr2_A           86 -----AFTNGNAV--DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAG---------KRLNSPNDLIVARDGAIWFTD  148 (305)
T ss_dssp             -----SCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEECEETT---------EECSCCCCEEECTTSCEEEEC
T ss_pred             -----CccceeeE--CCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCC---------CccCCCCCEEECCCCCEEEeC
Confidence                 66889999  8999877666666889999986 554333221100         01134677889999887764 


Q ss_pred             ---ceee-----------ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC------CeEEEEeC
Q 014005          188 ---LEWT-----------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------LRINLWNL  246 (432)
Q Consensus       188 ---~~~~-----------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d------~~i~lwd~  246 (432)
                         |...           ..+.|..+|...   ++... + . .....+.++|+|+++.|+.+ ..      +.|..|++
T Consensus       149 ~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~---g~~~~-~-~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~  222 (305)
T 3dr2_A          149 PPFGLRKPSQGCPADPELAHHSVYRLPPDG---SPLQR-M-A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAW  222 (305)
T ss_dssp             CSGGGSCGGGSCCCCCSSSCEEEEEECSSS---CCCEE-E-E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEE
T ss_pred             cCCCccccccccccccccCCCeEEEEcCCC---CcEEE-E-e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEe
Confidence               3210           024566666542   22222 2 1 23457889999999988777 44      78999998


Q ss_pred             CCCCce--eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcccee
Q 014005          247 EISDQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (432)
Q Consensus       247 ~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~  324 (432)
                      . .+..  ...+      ..........++++++| ++.+ +..+ .|.+||.. ++.    +..+..+           
T Consensus       223 ~-~~~l~~~~~~------~~~~~~~pdgi~~d~~G-~lwv-~~~~-gv~~~~~~-g~~----~~~~~~~-----------  276 (305)
T 3dr2_A          223 R-DGALHDRRHF------ASVPDGLPDGFCVDRGG-WLWS-SSGT-GVCVFDSD-GQL----LGHIPTP-----------  276 (305)
T ss_dssp             E-TTEEEEEEEE------ECCSSSCCCSEEECTTS-CEEE-CCSS-EEEEECTT-SCE----EEEEECS-----------
T ss_pred             c-CCCccCCeEE------EECCCCCCCeEEECCCC-CEEE-ecCC-cEEEECCC-CCE----EEEEECC-----------
Confidence            7 3321  1111      01122345678999999 7544 4444 59999974 554    3555542           


Q ss_pred             eeecceeEEEEcCCCCEEEEeeCCeEEEEe
Q 014005          325 EIIASISDIKFANDGQHLLSRDYMNLKVFR  354 (432)
Q Consensus       325 ~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd  354 (432)
                         ..+..++|+++++.|..++.+.+..++
T Consensus       277 ---~~~~~~~f~~d~~~L~it~~~~l~~~~  303 (305)
T 3dr2_A          277 ---GTASNCTFDQAQQRLFITGGPCLWMLP  303 (305)
T ss_dssp             ---SCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred             ---CceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence               358899999999887776555554443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.26  E-value=1.1e-08  Score=90.41  Aligned_cols=237  Identities=8%  Similarity=-0.015  Sum_probs=154.4

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ...+.++.++++|+++++...++.|..+|.+ ++..                         . .......          
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-------------------------~-~~~~~~~----------  103 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-------------------------E-YPLPQPD----------  103 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-------------------------E-EECSSTT----------
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-------------------------E-ecCCCCC----------
Confidence            3578999999999988877667889999876 3211                         0 0111122          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                        ..+.++++  .+++.++++...++.|..+|.. ++..... .....           ..+..+++++++...+.... 
T Consensus       104 --~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~~~~-----------~~~~~i~~d~~g~l~v~~~~-  165 (300)
T 2qc5_A          104 --SGPYGITE--GLNGDIWFTQLNGDRIGKLTAD-GTIYEYD-LPNKG-----------SYPAFITLGSDNALWFTENQ-  165 (300)
T ss_dssp             --CCEEEEEE--CSTTCEEEEETTTTEEEEECTT-SCEEEEE-CSSTT-----------CCEEEEEECTTSSEEEEETT-
T ss_pred             --CCCccceE--CCCCCEEEEccCCCeEEEECCC-CCEEEcc-CCCCC-----------CCceeEEECCCCCEEEEecC-
Confidence              56788999  7889888777768899999987 5543221 11111           45677888888875444333 


Q ss_pred             ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                       ++.+..++...    +............+..++++++++..++. ..+.|..||..  +......      .......+
T Consensus       166 -~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--g~~~~~~------~~~~~~~~  232 (300)
T 2qc5_A          166 -NNSIGRITNTG----KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT--GEISEYD------IPTPNARP  232 (300)
T ss_dssp             -TTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT--CCEEEEE------CSSTTCCE
T ss_pred             -CCeEEEECCCC----cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC--CcEEEEE------CCCCCCCc
Confidence             56777887631    12221112345678899999999877777 67889999985  3332221      12344568


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeE
Q 014005          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL  350 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i  350 (432)
                      .++++++++ ++.++...++.|..||. +++.     ..+.. +.          ....+.+++++++|++.++.. +.|
T Consensus       233 ~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~-----~~~~~-~~----------~~~~~~~i~~~~~g~l~v~~~-~~i  293 (300)
T 2qc5_A          233 HAITAGKNS-EIWFTEWGANQIGRITN-DNTI-----QEYQL-QT----------ENAEPHGITFGKDGSVWFALK-CKI  293 (300)
T ss_dssp             EEEEECSTT-CEEEEETTTTEEEEECT-TSCE-----EEEEC-CS----------TTCCCCCEEECTTSCEEEECS-SEE
T ss_pred             eEEEECCCC-CEEEeccCCCeEEEECC-CCcE-----EEEEC-Cc----------cCCccceeEeCCCCCEEEEcc-Cce
Confidence            999999998 77776666789999998 4543     22211 00          024678899999998777655 366


Q ss_pred             EEEec
Q 014005          351 KVFRY  355 (432)
Q Consensus       351 ~iwd~  355 (432)
                      ..+|.
T Consensus       294 ~~~~p  298 (300)
T 2qc5_A          294 GKLNL  298 (300)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            65553

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.23  E-value=4.4e-09  Score=105.58  Aligned_cols=198  Identities=14%  Similarity=0.075  Sum_probs=121.6

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCC-----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                      ..+..++|  ||||++|+.++.+     ..|++||+.+++.......              ...+..++|+|+ +.++.+
T Consensus       163 ~~~~~~~~--SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~--------------~~~~~~~~wspD-~~l~~~  225 (741)
T 1yr2_A          163 TALDAWAA--SDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK--------------WVKFSGLAWLGN-DALLYS  225 (741)
T ss_dssp             EEEEEEEE--CTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE--------------EEESCCCEESTT-SEEEEE
T ss_pred             EEEEeEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC--------------CceeccEEEECC-CEEEEE
Confidence            46788999  9999999887543     4699999999875432110              122457899999 877766


Q ss_pred             eeec------------cceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-cCC-----eEEEEeCCCC
Q 014005          189 EWTE------------NMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDL-----RINLWNLEIS  249 (432)
Q Consensus       189 ~~~~------------~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~d~-----~i~lwd~~~~  249 (432)
                      ....            ...|.+|++...... ....+. ..+...+..+.|+|||++++.. .++     .|++||+...
T Consensus       226 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          226 RFAEPKEGQAFQALNYNQTVWLHRLGTPQSA-DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             ECCCC--------CCCCCEEEEEETTSCGGG-CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred             EecCcccccccccCCCCCEEEEEECCCCchh-CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence            5421            224888887643211 122231 2333468899999999998876 543     8999999832


Q ss_pred             C-ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeC----CCeEEEEEccccc-cccccceeecccccccCCccce
Q 014005          250 D-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSA-LCDHSARILRDAAESHGSKSFF  323 (432)
Q Consensus       250 ~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~h~~~~~~~~~~  323 (432)
                      . .+...+       ..+...+... ++|++ ..|+..+.    ++.|.+||+.++. ..   ...+..+          
T Consensus       305 ~~~~~~~l-------~~~~~~~~~~-~~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~---~~l~~~~----------  362 (741)
T 1yr2_A          305 KIGPVTAL-------IPDLKAQWDF-VDGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRF---DTVVPES----------  362 (741)
T ss_dssp             EECCCEEE-------ECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEECSSSSCEE---EEEECCC----------
T ss_pred             CCcccEEe-------cCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCcccc---EEEecCC----------
Confidence            1 213333       2333334444 34888 66766664    3469999988642 11   2333332          


Q ss_pred             eeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          324 TEIIASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       324 ~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                         ...+..+.|+ ++.++++. .++..+||.+
T Consensus       363 ---~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          363 ---KDNLESVGIA-GNRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             ---SSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred             ---CCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence               3456677887 55566665 4576666655

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.23  E-value=3.4e-10  Score=102.74  Aligned_cols=189  Identities=8%  Similarity=-0.009  Sum_probs=124.1

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcc--ee-eeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK--VK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                      ..++.+++  ++...++++|+.++ +.+|++....  .. ....+.  +    ........ |..++|  ++.+++.+ .
T Consensus        38 ~~~nlLai--s~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~--~----~~~~~lp~-V~~l~f--d~~~L~v~-~  104 (388)
T 1xip_A           38 ASLQNLDI--SNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLT--F----KWEKEIPD-VIFVCF--HGDQVLVS-T  104 (388)
T ss_dssp             SCCBCEEE--ETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCC--C----SEEEECTT-EEEEEE--ETTEEEEE-E
T ss_pred             ccccEEEE--cCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccccc--c----eEEeeCCC-eeEEEE--CCCEEEEE-c
Confidence            46889999  88888999999875 6679976443  00 000000  0    00001124 889999  88888888 4


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                        ++.|++||+.......   .. ..+...+.++.+.+..  ++++ .||.+.+||+. .+....           +...
T Consensus       105 --~~~l~v~dv~sl~~~~---~~-~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~-~~~~~~-----------~~~~  164 (388)
T 1xip_A          105 --RNALYSLDLEELSEFR---TV-TSFEKPVFQLKNVNNT--LVILNSVNDLSALDLR-TKSTKQ-----------LAQN  164 (388)
T ss_dssp             --SSEEEEEESSSTTCEE---EE-EECSSCEEEEEECSSE--EEEEETTSEEEEEETT-TCCEEE-----------EEES
T ss_pred             --CCcEEEEEchhhhccC---cc-ceeecceeeEEecCCC--EEEEECCCCEEEEEcc-CCcccc-----------ccCC
Confidence              8999999998543322   22 3456678887776543  7777 99999999998 444322           2357


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      |++++|||+|   ++.|..||++++|+...++.-.  .+.+.. +..-.  . -.++...|.++.|.++++++++
T Consensus       165 Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~--k~~I~~-Pp~~~--~-~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          165 VTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEK--QFEFSL-PSELE--E-LPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEEECSSE---EEEEETTSCEEEEEEETTEEEE--EEEECC-CHHHH--T-SCTTTSEEEEEEESSSSEEEEE
T ss_pred             ceEEEEcCCc---eEEEEcCCcEEEEcCCCccccc--cceecC-Ccccc--c-ccCCCeeEEEEEEecCCeEEEE
Confidence            9999999998   5678999999999887655200  123311 00000  0 0001578999999999999987

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.22  E-value=1.4e-08  Score=92.78  Aligned_cols=250  Identities=12%  Similarity=0.026  Sum_probs=142.2

Q ss_pred             EEEEcCCCCEEEEec----------ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecC-Ccccc
Q 014005           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD  105 (432)
Q Consensus        37 ~~~fsp~g~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h-~~~~~  105 (432)
                      .+.|+|+|++|+++.          .++.|.+||..+.+..                           ..+.-- .+.+.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~---------------------------~~i~~~~~~~~~  122 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPRFD  122 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE---------------------------EEEECCCccccc
Confidence            899999999988875          3678999999876532                           222110 00000


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEeC--CCeEEEEEccCcceeee-eecCCCCccccccccccccccccccCCCCC
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  182 (432)
                            ....-..+.|  +|||++|+++..  ++.|.++| .+++.... ....              +   ++.+.+.+
T Consensus       123 ------~g~~p~~~~~--spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~--------------~---~~~~~~~~  176 (373)
T 2mad_H          123 ------VGPYSWMNAN--TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP--------------T---CYHIHPGA  176 (373)
T ss_pred             ------cCCCccceEE--CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC--------------c---eEEEEeCC
Confidence                  0012347888  899999998864  57899999 88874332 2111              1   12233333


Q ss_pred             cceecceeeccceEEEEeecccccceeeE--EeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC-ceeeEeec
Q 014005          183 AHGYHLEWTENMATKIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDM  258 (432)
Q Consensus       183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~-~~~~~~~~  258 (432)
                      ...+.. ...++.+.+++. .........  ....+.........+.+++..++.. ..+.+.+.|+.... .....+++
T Consensus       177 ~~~~~~-~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~  254 (373)
T 2mad_H          177 PSTFYL-LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA  254 (373)
T ss_pred             CceEEE-EcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeee
Confidence            222211 123777778877 321111111  0000111111234456665554444 77889999987221 12222211


Q ss_pred             CCCC---cCCCCcceEEEEEcCCCCcEEEEEeC----------CCeEEEEEccccccccccceeecccccccCCccceee
Q 014005          259 KPSN---MDDLTEVITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE  325 (432)
Q Consensus       259 ~~~~---~~~~~~~v~~~~~~p~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  325 (432)
                      ....   ..........+.++|++ +.+..+..          ++.|.++|+.+++.    +..+..             
T Consensus       255 ~~~~~~~~~~~p~g~~~~~~s~d~-~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v----v~~i~~-------------  316 (373)
T 2mad_H          255 LSGGRKADTWRPGGWQQVAYLKSS-DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT----SSQISL-------------  316 (373)
T ss_pred             cCCcccccceecCceEeEEECCCC-CEEEEEeccCCcccccCCCCeEEEEECCCCEE----EEEEEC-------------
Confidence            1100   00112234457899998 65555432          35899999998876    466654             


Q ss_pred             eecceeEEEEcCCCC-EEEEee--CCeEEEEec---Cccee
Q 014005          326 IIASISDIKFANDGQ-HLLSRD--YMNLKVFRY---EPVMT  360 (432)
Q Consensus       326 ~~~~v~~~~~s~dg~-~l~s~~--~~~i~iwd~---~~~~~  360 (432)
                       ......++|+|||+ +++++.  ++.|.++|+   +.+++
T Consensus       317 -g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          317 -GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             -CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence             34688999999999 676654  499999999   44444

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.20  E-value=1.4e-09  Score=98.28  Aligned_cols=255  Identities=11%  Similarity=0.102  Sum_probs=145.2

Q ss_pred             EEEEcCCCCEEEEec----------ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        37 ~~~fsp~g~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      .+.++|+|++|.++.          .++.|.+||..+.+..                           .++.--...   
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~---------------------------~~I~v~~g~---  131 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT---------------------------ADIELPDAP---  131 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------------------------EEEEETTCC---
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE---------------------------EEEECCCcc---
Confidence            399999999887765          3678999999887643                           222110000   


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeC--CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC-c
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-A  183 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~  183 (432)
                        .......-..+.+  +|||++++++..  ++.|.++|+.+++..........                ...+ |.+ .
T Consensus       132 --r~~~g~~P~~~a~--spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~----------------~~~~-P~g~~  190 (386)
T 3sjl_D          132 --RFLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC----------------YHIF-PTAPD  190 (386)
T ss_dssp             --CCCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----------------EEEE-EEETT
T ss_pred             --ccccCCCCceEEE--cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc----------------ceee-cCCCc
Confidence              0000023456888  999999888864  68999999999885443322110                0001 111 1


Q ss_pred             ceecceeeccceEEEEeecccccceeeEEee---cCCCCCee-EEEe-CCCCCEEEEEcCCeEEEEeCCCCC-ceeeEee
Q 014005          184 HGYHLEWTENMATKIANVGNSVHARCQKVYP---HAHDFNIN-SISN-NSDCETFVSADDLRINLWNLEISD-QCFNIVD  257 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~---~~~~~~i~-~~~~-~~~~~~l~~~~d~~i~lwd~~~~~-~~~~~~~  257 (432)
                      .++..+.  ||.+.+.++...  ++......   ......+. ...| .++|+++....+|.+++.|..... .....+.
T Consensus       191 ~~~~~~~--DG~~~~v~~~~~--g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~  266 (386)
T 3sjl_D          191 TFFMHCR--DGSLAKVAFGTE--GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVE  266 (386)
T ss_dssp             EEEEEET--TSCEEEEECCSS--SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEE
T ss_pred             eeEEECC--CCCEEEEECCCC--CeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeeccee
Confidence            1222222  666666666531  11111110   11112221 2345 467866665678999999997222 1222221


Q ss_pred             c-CC--CCcCCCCcceEEEEEcCCCCcEEEEEeC----------CCeEEEEEccccccccccceeecccccccCCcccee
Q 014005          258 M-KP--SNMDDLTEVITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (432)
Q Consensus       258 ~-~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~  324 (432)
                      + ..  ............++++|++ +.++....          .+.|.++|+.+++.    ++.+..            
T Consensus       267 ~~~~~~~~~g~~p~g~q~~a~~~~~-~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv----~~~i~v------------  329 (386)
T 3sjl_D          267 ALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKTGER----LAKFEM------------  329 (386)
T ss_dssp             SSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCE----EEEEEE------------
T ss_pred             ccccccccccccCCCcceeeECCCC-CeEEEEeccccccccCCCCCEEEEEECCCCeE----EEEEEC------------
Confidence            0 00  0000012233457789998 65555532          25799999999887    566655            


Q ss_pred             eeecceeEEEEcCCCC-EEEEe--eCCeEEEEec---CcceeEeecc
Q 014005          325 EIIASISDIKFANDGQ-HLLSR--DYMNLKVFRY---EPVMTLSFCG  365 (432)
Q Consensus       325 ~~~~~v~~~~~s~dg~-~l~s~--~~~~i~iwd~---~~~~~~~~~~  365 (432)
                        ...+.++++++|++ +|++.  .++.|.++|.   +.++++....
T Consensus       330 --g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~  374 (386)
T 3sjl_D          330 --GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG  374 (386)
T ss_dssp             --EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred             --CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC
Confidence              45788999999997 66553  3499999999   6666665543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.18  E-value=2e-10  Score=104.20  Aligned_cols=187  Identities=9%  Similarity=0.074  Sum_probs=121.6

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      .++.+++++...++++|+.+ .+++|+++.....         +.....       +.... ....+.            
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~---------~~~~~~-------~~~~~-~~~~lp------------   88 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDH---------ITSDST-------PLTFK-WEKEIP------------   88 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHH---------HHSSSC-------CCCCS-EEEECT------------
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhh---------hccccc-------cccce-EEeeCC------------
Confidence            68999999999999999987 5677997653210         000000       00000 111233            


Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceee-eeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK-IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      . |+.++|    |+.+|+++ .++.|++||+.+..... ...+.              ..+..+.+.+..  ++.+..  
T Consensus        89 ~-V~~l~f----d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~--------------~~v~~i~~~~p~--~av~~~--  144 (388)
T 1xip_A           89 D-VIFVCF----HGDQVLVS-TRNALYSLDLEELSEFRTVTSFE--------------KPVFQLKNVNNT--LVILNS--  144 (388)
T ss_dssp             T-EEEEEE----ETTEEEEE-ESSEEEEEESSSTTCEEEEEECS--------------SCEEEEEECSSE--EEEEET--
T ss_pred             C-eeEEEE----CCCEEEEE-cCCcEEEEEchhhhccCccceee--------------cceeeEEecCCC--EEEEEC--
Confidence            6 999999    68899998 88999999997654221 21221              234444443332  444444  


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCce--eeEeecCCCCcC---CC
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC--FNIVDMKPSNMD---DL  266 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~--~~~~~~~~~~~~---~~  266 (432)
                      +|.+.+||+..   .....     +...|.|++|+|+|  ++.| .||++++|+.+ ....  ...+. +|..+.   +|
T Consensus       145 dG~L~v~dl~~---~~~~~-----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~-~~~~~~k~~I~-~Pp~~~~~~~~  212 (388)
T 1xip_A          145 VNDLSALDLRT---KSTKQ-----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWR-NGEMEKQFEFS-LPSELEELPVE  212 (388)
T ss_dssp             TSEEEEEETTT---CCEEE-----EEESEEEEEECSSE--EEEEETTSCEEEEEEE-TTEEEEEEEEC-CCHHHHTSCTT
T ss_pred             CCCEEEEEccC---Ccccc-----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCC-Cccccccceec-CCcccccccCC
Confidence            99999999983   33322     23489999999999  5667 99999999988 4443  44442 222222   47


Q ss_pred             CcceEEEEEcCCCCcEEEEEe
Q 014005          267 TEVITSAEFHPIYCNLLAYSS  287 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~  287 (432)
                      ...|.++.|.+++ .++++-.
T Consensus       213 ~~~V~sI~wl~~~-~flv~y~  232 (388)
T 1xip_A          213 EYSPLSVTILSPQ-DFLAVFG  232 (388)
T ss_dssp             TSEEEEEEESSSS-EEEEEEE
T ss_pred             CeeEEEEEEecCC-eEEEEEc
Confidence            7889999999998 7777643

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.16  E-value=1.8e-08  Score=92.69  Aligned_cols=248  Identities=10%  Similarity=0.053  Sum_probs=144.8

Q ss_pred             CCCCEEEEecc-c----ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcce
Q 014005           42 KTGDYLAVGDR-G----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (432)
Q Consensus        42 p~g~~l~t~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (432)
                      |+++.+.+... +    +.|.++|..+.+.+                           .++..-.            .+ 
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv---------------------------~~I~vG~------------~P-  121 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL---------------------------GMTDGGF------------LP-  121 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEE---------------------------EEEEECS------------SC-
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEE---------------------------EEEECCC------------CC-
Confidence            56676555443 2    69999999887643                           4444322            34 


Q ss_pred             eEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCccee
Q 014005          117 NRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                       .+.+  +||+++++++.          .++.|.++|..+.+...........      ..........+.++|++++++
T Consensus       122 -gia~--SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~------r~~~g~~P~~~~~spDGk~ly  192 (426)
T 3c75_H          122 -HPVA--AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP------RFLVGTYQWMNALTPDNKNLL  192 (426)
T ss_dssp             -EEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC------CCCBSCCGGGSEECTTSSEEE
T ss_pred             -ceEE--CCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc------ccccCCCcceEEEcCCCCEEE
Confidence             7889  99999888875          4678999999988754433221000      000012356789999999999


Q ss_pred             cceeeccceEEEEeecccccceeeEEeecCCC------CCeeEEEeCCCCCEE---------------------------
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVYPHAHD------FNINSISNNSDCETF---------------------------  233 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l---------------------------  233 (432)
                      ......++.|.+.|+.   +.+.+..+..+..      +.-.-+.++++|+.+                           
T Consensus       193 V~n~~~~~~VsVID~~---t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~  269 (426)
T 3c75_H          193 FYQFSPAPAVGVVDLE---GKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINH  269 (426)
T ss_dssp             EEECSSSCEEEEEETT---TTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSC
T ss_pred             EEecCCCCeEEEEECC---CCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeE
Confidence            8875446789999988   4455544421110      000112233333333                           


Q ss_pred             ----------EEE-cCCeEEEEeCCCCCce--eeEeecCCCCcCC---CCcceEEEEEcCCCCcEEEEEeC---------
Q 014005          234 ----------VSA-DDLRINLWNLEISDQC--FNIVDMKPSNMDD---LTEVITSAEFHPIYCNLLAYSSS---------  288 (432)
Q Consensus       234 ----------~~~-~d~~i~lwd~~~~~~~--~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~---------  288 (432)
                                +.. ..+.+.+.|.. ....  ...+.+.......   .......++++|++ +.+++...         
T Consensus       270 ~~~~~dg~~~~~~s~~g~V~ViD~~-~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg-~rlyVa~~~~~~gthk~  347 (426)
T 3c75_H          270 PAFSLRSGRLVWPTYTGKIFQADLT-AEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS-DRIYLLVDQRDEWKHKA  347 (426)
T ss_dssp             CEECTTTCEEEEEBTTSEEEEEEEC-SSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG-TEEEEEEEECCTTCTTS
T ss_pred             eeecCCCCEEEEEeCCCcEEEEecc-CCceEEeeeeeeccccccccccccCCceeeEEcCCC-CEEEEEecccccccccC
Confidence                      322 33444444443 1110  0001000000000   01112236899998 55554432         


Q ss_pred             -CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC-EEEEee--CCeEEEEec---CcceeE
Q 014005          289 -RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD--YMNLKVFRY---EPVMTL  361 (432)
Q Consensus       289 -dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~s~~--~~~i~iwd~---~~~~~~  361 (432)
                       ++.|.++|+.+++.    +..+..              ......+.|+|||+ ++++..  ++.|.++|+   +.++++
T Consensus       348 ~s~~VsVID~~T~kv----v~~I~v--------------g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          348 ASRFVVVLNAETGER----INKIEL--------------GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             CEEEEEEEETTTCCE----EEEEEE--------------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCCEEEEEECCCCeE----EEEEEC--------------CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence             35799999999886    566655              34688999999999 777754  499999999   555555

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.16  E-value=7.7e-09  Score=90.34  Aligned_cols=192  Identities=12%  Similarity=0.125  Sum_probs=129.3

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      .+.++.++|+|++|++  .++.|..||. +++.+                           ..+..+.           .
T Consensus        38 ~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~---------------------------W~~~~~~-----------~   76 (276)
T 3no2_A           38 ECNSVAATKAGEILFS--YSKGAKMITR-DGREL---------------------------WNIAAPA-----------G   76 (276)
T ss_dssp             CCCEEEECTTSCEEEE--CBSEEEEECT-TSCEE---------------------------EEEECCT-----------T
T ss_pred             CCcCeEECCCCCEEEe--CCCCEEEECC-CCCEE---------------------------EEEcCCC-----------C
Confidence            5788999999998883  4678999998 55432                           4555432           0


Q ss_pred             cceeEEEEEEcCCCCEEEEEeC-CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          114 EKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      ..+.++.+  .++|+.+++.+. ++.|..+|.. ++.........                                   
T Consensus        77 ~~~~~~~~--~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~-----------------------------------  118 (276)
T 3no2_A           77 CEMQTARI--LPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFET-----------------------------------  118 (276)
T ss_dssp             CEEEEEEE--CTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECC-----------------------------------
T ss_pred             ccccccEE--CCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccC-----------------------------------
Confidence            45778888  899999998877 7777777753 33211111100                                   


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (432)
                                    .     . ..+......+++.++|+++++. .++.|..||.+  ++.+..+.       .. ..+.
T Consensus       119 --------------~-----~-~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~w~~~-------~~-~~~~  168 (276)
T 3no2_A          119 --------------G-----I-ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLLNSVK-------LS-GTPF  168 (276)
T ss_dssp             --------------S-----C-SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEEEEEE-------CS-SCCC
T ss_pred             --------------C-----C-CcccccccCceECCCCCEEEEecCCCEEEEECCC--CCEEEEEE-------CC-CCcc
Confidence                          0     0 1112234456788999999998 89999999988  56666552       11 3455


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005          272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (432)
Q Consensus       272 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~  346 (432)
                      ++...+++ +++++++.+++|..+|..+|+.    +..+..+ ..+..      ....+..+...++|..+++..
T Consensus       169 ~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~~----~w~~~~~-~~~~~------~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          169 SSAFLDNG-DCLVACGDAHCFVQLNLESNRI----VRRVNAN-DIEGV------QLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEECTTS-CEEEECBTTSEEEEECTTTCCE----EEEEEGG-GSBSC------CCSEEEEEEECTTSCEEEEEE
T ss_pred             ceeEcCCC-CEEEEeCCCCeEEEEeCcCCcE----EEEecCC-CCCCc------cccccccceEcCCCCEEEEec
Confidence            67888998 8898888888999999998886    4555431 10000      023478889999999888863

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.11  E-value=1.3e-08  Score=92.06  Aligned_cols=249  Identities=9%  Similarity=0.069  Sum_probs=144.8

Q ss_pred             CcEEEEEEcCCCCEEEEecc--cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           33 DIVSAIEFDKTGDYLAVGDR--GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      .....++++|+|+++++...  ++.++||.+++++...                   -|...  ....+|-         
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~-------------------~p~~~--~~~~~~~---------   66 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIP-------------------FPPQS--GNAIITF---------   66 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEE-------------------SCCCC--SSCCCCC---------
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeec-------------------CCCcc--cCcccce---------
Confidence            47899999999999888542  3436777776432110                   00000  0111233         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeC-----CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (432)
                         ..+..+++  +++++++++-..     ++.|.+||+.+++......+....       .........+++++++..+
T Consensus        67 ---~~p~gv~~--d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~-------~~~~~~~~~v~vd~~~g~~  134 (343)
T 2qe8_A           67 ---DTVLGIKS--DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI-------TLSNSFVNDLAVDLIHNFV  134 (343)
T ss_dssp             ---SCEEEEEE--CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT-------SCTTCCCCEEEEETTTTEE
T ss_pred             ---eEeeEEEE--cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh-------cccccccceEEEecCCCEE
Confidence               67899999  888876665543     578999999988744433332110       0011345677777654443


Q ss_pred             ecceee--ccceEEEEeecccccceeeEEeecCC-----------------------------CCCeeEEEeCCCCCEEE
Q 014005          186 YHLEWT--ENMATKIANVGNSVHARCQKVYPHAH-----------------------------DFNINSISNNSDCETFV  234 (432)
Q Consensus       186 ~~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~-----------------------------~~~i~~~~~~~~~~~l~  234 (432)
                      +.....  .++.|.+||+.   .++..+.+ .+|                             ...++.++++|+++.|.
T Consensus       135 yvtd~~~~~~~~i~v~d~~---~g~~~r~~-~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly  210 (343)
T 2qe8_A          135 YISDPAPDDKAALIRVDLQ---TGLAARVL-QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLY  210 (343)
T ss_dssp             EEEECCSGGGCEEEEEETT---TCCEEEEC-TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEE
T ss_pred             EEEcCccCCCCeEEEEECC---CCCEEEEe-cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEE
Confidence            332211  26788999987   33333332 111                             12368899999999888


Q ss_pred             EE-cCC-eEEEEeCCC--CCce--eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccce
Q 014005          235 SA-DDL-RINLWNLEI--SDQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR  308 (432)
Q Consensus       235 ~~-~d~-~i~lwd~~~--~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  308 (432)
                      .+ .++ .+..++...  ....  .+..  ......++......++++++| +++++...++.|.+||..+++.     .
T Consensus       211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~-----~  282 (343)
T 2qe8_A          211 LSPMHSTSMYRIKSADLSNLQLTDAELG--SKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAY-----K  282 (343)
T ss_dssp             EEESSCSEEEEEEHHHHTCTTCCHHHHH--TTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEE-----E
T ss_pred             EEeCCCCeEEEEEHHHhcCCCCChhhhh--cceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCE-----E
Confidence            77 444 554444320  0000  0000  000001233346679999998 8998888899999999855553     2


Q ss_pred             eecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005          309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (432)
Q Consensus       309 ~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~  346 (432)
                      .+...+           ....+.+++|.++|+++++..
T Consensus       283 ~~~~~~-----------~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          283 LLVTDE-----------KLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             EEEECG-----------GGSCEEEEEECTTSCEEEEEC
T ss_pred             EEEECC-----------ceecCCeeEECCCCcEEEEeC
Confidence            222110           034688999999998877764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.07  E-value=7.2e-07  Score=81.38  Aligned_cols=290  Identities=8%  Similarity=-0.029  Sum_probs=159.1

Q ss_pred             EEcCCCCEEEEecc--cc---eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           39 EFDKTGDYLAVGDR--GG---RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        39 ~fsp~g~~l~t~~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      ...|+++++.+...  ..   +|.++|..+++..                           .++..-.            
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~---------------------------~~i~~g~------------   67 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL---------------------------GHVNGGF------------   67 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEE---------------------------EEecCCC------------
Confidence            34578887766653  22   7899998876532                           3333222            


Q ss_pred             cceeEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005          114 EKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  183 (432)
                      .+  .+.+  +||+++++++.          .++.|.+||..+.+...........      ..........+.++|+++
T Consensus        68 ~p--~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~------~~~~g~~p~~~~~spDG~  137 (373)
T 2mad_H           68 LP--NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP------RFDVGPYSWMNANTPNNA  137 (373)
T ss_pred             CC--CeEE--CCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcc------ccccCCCccceEECCCCC
Confidence            22  7889  99999998885          3678999999876643322221000      000002345789999999


Q ss_pred             ceecceeeccceEEEEeecccccceeeEE-eecCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCCCCCceeeEeecCC
Q 014005          184 HGYHLEWTENMATKIANVGNSVHARCQKV-YPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~-~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (432)
                      +++......++.|.++| .   +++.+.. + .. ..   ++.+.|+++ .+++. .||.+.++|. . +.........+
T Consensus       138 ~l~v~n~~~~~~v~viD-~---t~~~~~~~i-~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~-g~~~~~~~~~~  206 (373)
T 2mad_H          138 DLLFFQFAAGPAVGLVV-Q---GGSSDDQLL-SS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-A-GGAAGAGLVGA  206 (373)
T ss_pred             EEEEEecCCCCeEEEEE-C---CCCEEeEEc-CC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-C-CcEEEEEeccc
Confidence            99988653357899999 7   5566655 4 21 11   244555553 33444 8999999999 3 33332221101


Q ss_pred             CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (432)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~  340 (432)
                      .. .+.........+.+++ ..++..+..+.+.+.|+.++...  ....+......... .  .........+.++||++
T Consensus       207 ~~-~~~~p~~~~~~~~~~~-~~~~~~~~~~~v~vid~~~~~~~--v~~~~~~~~~~~~~-~--~~~p~g~~~~~~s~d~~  279 (373)
T 2mad_H          207 ML-TAAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGAT--NKAPIDALSGGRKA-D--TWRPGGWQQVAYLKSSD  279 (373)
T ss_pred             cc-cCCcceeecceeEecC-CEEEEEcCCceEEEEeccCCcce--EeeeeeecCCcccc-c--ceecCceEeEEECCCCC
Confidence            00 1111112345677776 44444447889999999755321  01222110000000 0  00012344578999988


Q ss_pred             EEEEee-----------CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceee-EEEEeecccceeeeecc
Q 014005          341 HLLSRD-----------YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCV-IYIITTLYLINLSALSA  405 (432)
Q Consensus       341 ~l~s~~-----------~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~i~~~~~  405 (432)
                      .|....           .+.|.+.|+   +.++++.....           +....+..+-. .++++...++.|.++|.
T Consensus       280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~-----------p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~  348 (373)
T 2mad_H          280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHD-----------VDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCC-----------cCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            766532           257999999   45566654331           22222222222 22333335899999995


Q ss_pred             C
Q 014005          406 G  406 (432)
Q Consensus       406 ~  406 (432)
                      .
T Consensus       349 ~  349 (373)
T 2mad_H          349 G  349 (373)
T ss_pred             C
Confidence            4

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.03  E-value=3.8e-08  Score=87.65  Aligned_cols=203  Identities=9%  Similarity=0.041  Sum_probs=127.9

Q ss_pred             CCcEEEEEEcCC-CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeee-ecCCccccccch
Q 014005           32 VDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYLKS  109 (432)
Q Consensus        32 ~~~V~~~~fsp~-g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~~~~  109 (432)
                      ...+.++.++++ |+++++.. .+.|.+||.+ ++..                            .+ ......      
T Consensus        70 ~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~----------------------------~~~~~~~~~------  113 (314)
T 1pjx_A           70 GGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFE----------------------------EIAKKDSEG------  113 (314)
T ss_dssp             ECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEE----------------------------ECCSBCTTS------
T ss_pred             CCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEE----------------------------EEEeccCCC------
Confidence            357899999999 77555544 3478889987 4321                            11 000000      


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCC---------------CeEEEEEccCcceeeeeecCCCCccccccccccccccc
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTND---------------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d---------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  174 (432)
                       .....+.++++  +++|+++++...+               +.|..++.. ++...+....              ....
T Consensus       114 -~~~~~~~~i~~--d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~--------------~~~~  175 (314)
T 1pjx_A          114 -RRMQGCNDCAF--DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF--------------QFPN  175 (314)
T ss_dssp             -CBCBCCCEEEE--CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE--------------SSEE
T ss_pred             -ccccCCcCEEE--CCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCC--------------CCcc
Confidence             00045788999  8899887777654               567777765 4433321110              2345


Q ss_pred             cccCC----CCCcceecceeeccceEEEEeecccccce---eeEEeecCCC-CCeeEEEeCCCCCEEEEE-cCCeEEEEe
Q 014005          175 NEHNP----PSFAHGYHLEWTENMATKIANVGNSVHAR---CQKVYPHAHD-FNINSISNNSDCETFVSA-DDLRINLWN  245 (432)
Q Consensus       175 ~~~~~----~~~~~~~~~~~~~~~~v~i~d~~~~~~~~---~~~~~~~~~~-~~i~~~~~~~~~~~l~~~-~d~~i~lwd  245 (432)
                      .++++    +++..++.+.. .++.|.+|+........   ....+ ..+. ..+..++++++|+++++. .++.|..||
T Consensus       176 ~i~~~~~~d~dg~~l~v~~~-~~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d  253 (314)
T 1pjx_A          176 GIAVRHMNDGRPYQLIVAET-PTKKLWSYDIKGPAKIENKKVWGHI-PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEET-TTTEEEEEEEEETTEEEEEEEEEEC-CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             eEEEecccCCCCCEEEEEEC-CCCeEEEEECCCCCccccceEEEEC-CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEc
Confidence            56777    88865544421 16789999875211111   22222 2333 568889999999888877 789999999


Q ss_pred             CCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCc-EEEEEeCCCeEEEEEccc
Q 014005          246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQ  299 (432)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~i~iwd~~~  299 (432)
                      .+ +++....+       ..+...+.+++|+|++ + ++++...++.|..|++..
T Consensus       254 ~~-~g~~~~~~-------~~~~~~~~~i~~~~dg-~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          254 PD-GGQPKMRI-------RCPFEKPSNLHFKPQT-KTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TT-CBSCSEEE-------ECSSSCEEEEEECTTS-SEEEEEETTTTEEEEEECSS
T ss_pred             CC-CCcEeEEE-------eCCCCCceeEEECCCC-CEEEEEeCCCCeEEEEeCCC
Confidence            87 45544444       3344678999999999 7 555555678999999875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.01  E-value=3.1e-07  Score=81.18  Aligned_cols=204  Identities=10%  Similarity=0.038  Sum_probs=127.8

Q ss_pred             ceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          115 KINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       115 ~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      --.+..|  +++ +.++++...++.|..||..++..... ..   .           ..+..+++++++.+++. .   +
T Consensus        14 ~~Egp~w--~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~---~-----------~~~~~i~~~~dG~l~v~-~---~   72 (297)
T 3g4e_A           14 CGESPVW--EEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TM---D-----------APVSSVALRQSGGYVAT-I---G   72 (297)
T ss_dssp             BEEEEEE--ETTTTEEEEEETTTTEEEEEETTTCCEEEE-EC---S-----------SCEEEEEEBTTSSEEEE-E---T
T ss_pred             cccCCeE--ECCCCEEEEEECCCCEEEEEECCCCcEEEE-eC---C-----------CceEEEEECCCCCEEEE-E---C
Confidence            4457889  664 45566666789999999988764332 11   1           46778889999985544 2   5


Q ss_pred             ceEEEEeecccccceeeEEeec---CCCCCeeEEEeCCCCCEEEEE-cC---------CeEEEEeCCCCCceeeEeecCC
Q 014005          194 MATKIANVGNSVHARCQKVYPH---AHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKP  260 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~-~d---------~~i~lwd~~~~~~~~~~~~~~~  260 (432)
                      +.+.+||..   +++.......   .....++.++++|+|+++++. .+         ..-.+|.++..+.....     
T Consensus        73 ~~l~~~d~~---~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-----  144 (297)
T 3g4e_A           73 TKFCALNWK---EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY-----  144 (297)
T ss_dssp             TEEEEEETT---TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE-----
T ss_pred             CeEEEEECC---CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE-----
Confidence            678888886   3333222211   123458899999999977765 32         23456655522332222     


Q ss_pred             CCcCCCCcceEEEEEcCCCCcEE-EEEeCCCeEEEEEc--ccccccc-ccceeecccccccCCccceeeeecceeEEEEc
Q 014005          261 SNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDM--RQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (432)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~--~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s  336 (432)
                         .......+.++|+|++ +.| ++.+.++.|.+||+  .++.... +....+..+             ......++++
T Consensus       145 ---~~~~~~pngi~~spdg-~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~-------------~~~p~g~~~d  207 (297)
T 3g4e_A          145 ---FDQVDISNGLDWSLDH-KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE-------------EQIPDGMCID  207 (297)
T ss_dssp             ---EEEESBEEEEEECTTS-CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG-------------GCEEEEEEEB
T ss_pred             ---eeccccccceEEcCCC-CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCC-------------CCCCCeeEEC
Confidence               2223456899999999 655 55566789999997  4444210 001111111             2457789999


Q ss_pred             CCCCEEEEeeC-CeEEEEec---CcceeEeec
Q 014005          337 NDGQHLLSRDY-MNLKVFRY---EPVMTLSFC  364 (432)
Q Consensus       337 ~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~  364 (432)
                      ++|++.++... +.|..||.   +.+..+..+
T Consensus       208 ~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p  239 (297)
T 3g4e_A          208 AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP  239 (297)
T ss_dssp             TTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred             CCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence            99987777644 88999998   455566554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.00  E-value=4.9e-07  Score=81.75  Aligned_cols=290  Identities=9%  Similarity=0.004  Sum_probs=163.9

Q ss_pred             EEEcCCCCEEEEecc-----cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005           38 IEFDKTGDYLAVGDR-----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (432)
Q Consensus        38 ~~fsp~g~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  112 (432)
                      ....|+++.+.+...     ++.|.+.|..+.+.+                           .++..-.           
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~---------------------------~~I~vG~-----------   79 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI---------------------------GMIDGGF-----------   79 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE---------------------------EEEEECS-----------
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE---------------------------EEEECCC-----------
Confidence            456799998877654     679999999887633                           4444332           


Q ss_pred             hcceeEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC
Q 014005          113 EEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF  182 (432)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  182 (432)
                       .+ . +.+  +|||++++++.          .++.|.+||..+.+...........      ..........+.++|++
T Consensus        80 -~P-~-va~--spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~------r~~~g~~P~~~a~spDG  148 (386)
T 3sjl_D           80 -LP-N-PVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP------RFLVGTYPWMTSLTPDG  148 (386)
T ss_dssp             -SC-E-EEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC------CCCBSCCGGGEEECTTS
T ss_pred             -CC-c-EEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc------ccccCCCCceEEEcCCC
Confidence             33 3 888  99999887775          3678999999988754433221100      00001245678999999


Q ss_pred             cceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC
Q 014005          183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS  261 (432)
Q Consensus       183 ~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~  261 (432)
                      ++++......++.|.++|+.   +.+.+..+....   . ...+....+.+++. .||++.+.++...+......   ..
T Consensus       149 k~lyVan~~~~~~VsVID~~---t~~vv~tI~v~g---~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~---~~  218 (386)
T 3sjl_D          149 KTLLFYQFSPAPAVGVVDLE---GKAFKRMLDVPD---C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH---TE  218 (386)
T ss_dssp             SEEEEEECSSSCEEEEEETT---TTEEEEEEECCS---E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE---CC
T ss_pred             CEEEEEEcCCCCeEEEEECC---CCcEEEEEECCC---c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee---cc
Confidence            99988765346899999999   667777662211   1 12222233445444 78888888877323332211   00


Q ss_pred             CcCCCCcce-EEEEEc-CCCCcEEEEEeCCCeEEEEEccccccccccceeec---ccccccCCccceeeeecceeEEEEc
Q 014005          262 NMDDLTEVI-TSAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILR---DAAESHGSKSFFTEIIASISDIKFA  336 (432)
Q Consensus       262 ~~~~~~~~v-~~~~~~-p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~h~~~~~~~~~~~~~~~~v~~~~~s  336 (432)
                      .+..-...+ ....|. ++| ++++ .+.+|.|.+.|+.++....  ...+.   .....+.      ........++++
T Consensus       219 ~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v--~~~~~~~~~~~~~~g------~~p~g~q~~a~~  288 (386)
T 3sjl_D          219 VFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKF--LPAVEALTEAERADG------WRPGGWQQVAYH  288 (386)
T ss_dssp             CCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEE--CCCEESSCHHHHHTT------EEECSSSCEEEE
T ss_pred             eeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCccee--ecceecccccccccc------ccCCCcceeeEC
Confidence            011111112 123664 676 5544 6668999999997654210  12121   0000000      011244467889


Q ss_pred             CCCCEEEEee-----------CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeee
Q 014005          337 NDGQHLLSRD-----------YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSA  402 (432)
Q Consensus       337 ~dg~~l~s~~-----------~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~  402 (432)
                      ++++.|....           .+.|.+.|+   +.++.+..... .         --+.+.......++++...++.|.+
T Consensus       289 ~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~-~---------~~lavs~D~~~~ly~tn~~~~~VsV  358 (386)
T 3sjl_D          289 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-I---------DSINVSQDEKPLLYALSTGDKTLYI  358 (386)
T ss_dssp             TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE-E---------CEEEECSSSSCEEEEEETTTTEEEE
T ss_pred             CCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCC-c---------ceEEECCCCCeEEEEEcCCCCeEEE
Confidence            9988776632           157899999   56666655432 0         0111112222123344456889999


Q ss_pred             eccC
Q 014005          403 LSAG  406 (432)
Q Consensus       403 ~~~~  406 (432)
                      +|..
T Consensus       359 iD~~  362 (386)
T 3sjl_D          359 HDAE  362 (386)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9943

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.97  E-value=1.8e-07  Score=86.59  Aligned_cols=223  Identities=10%  Similarity=0.074  Sum_probs=135.7

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      .....|+|  +++++++++...++.|+.||..++.+..+....              .... +++++++..++.......
T Consensus       131 ~~P~~la~--d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~--------------~~~~-ia~~~~g~~l~~~d~~~~  193 (409)
T 3hrp_A          131 KYMWGIAA--VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF--------------KGGK-PAVTKDKQRVYSIGWEGT  193 (409)
T ss_dssp             CCEEEEEE--CSTTEEEEEETTTTEEEEEETTTTEEEEEEETC--------------CBCB-CEECTTSSEEEEEBSSTT
T ss_pred             CCceEEEE--eCCCCEEEEecCCCcEEEEECCCCEEEEeeccC--------------CCCc-eeEecCCCcEEEEecCCC
Confidence            45778999  889987777777899999999988765554331              2223 889999988777765222


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce--
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI--  270 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v--  270 (432)
                      ..+.+++.........+..+.......+.+++++|++..|..+ .++.|+.||.+ .+.. ..+...  ...+....-  
T Consensus       194 ~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~-~~~~-~~~~~~--~~~g~~~~~P~  269 (409)
T 3hrp_A          194 HTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVK-TQEV-TLIKQL--ELSGSLGTNPG  269 (409)
T ss_dssp             CEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETT-TCCE-EEEEEC--CCCSCCCCSSC
T ss_pred             ceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECC-CCCE-EEEecc--cccCCCCCCcc
Confidence            2677777663222112211211145678899999955555557 88899999998 3332 222000  011222222  


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcc--ceeeeecceeEEEEcCCCCEEEEee-C
Q 014005          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS--FFTEIIASISDIKFANDGQHLLSRD-Y  347 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~--~~~~~~~~v~~~~~s~dg~~l~s~~-~  347 (432)
                      ..++|+|++..++++-..++.|+.||... ..     ..+.++...+....  ...........++++++|+++++-. .
T Consensus       270 ~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-~~-----~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~  343 (409)
T 3hrp_A          270 PYLIYYFVDSNFYMSDQNLSSVYKITPDG-EC-----EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK  343 (409)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEECTTC-CE-----EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT
T ss_pred             ccEEEeCCCCEEEEEeCCCCEEEEEecCC-CE-----EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC
Confidence            38999995427777777888999999763 32     33333210000000  0000124578999999999777755 4


Q ss_pred             -CeEEEEec--CcceeEee
Q 014005          348 -MNLKVFRY--EPVMTLSF  363 (432)
Q Consensus       348 -~~i~iwd~--~~~~~~~~  363 (432)
                       ++|+.||+  ..+.++..
T Consensus       344 ~~~I~~~~~~~G~v~~~~g  362 (409)
T 3hrp_A          344 GYCLRKLDILDGYVSTVAG  362 (409)
T ss_dssp             TCEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEECCCCEEEEEeC
Confidence             99999996  34444443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.96  E-value=8.4e-08  Score=86.78  Aligned_cols=214  Identities=10%  Similarity=-0.004  Sum_probs=117.5

Q ss_pred             EEEEEEcCCCCEEEEEe----------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          118 RVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       118 ~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                      .+.+  +||+++++++.          .++.|.+||+.+++...........      ..........++++|++++++.
T Consensus        69 ~i~~--spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~------~~~~g~~P~~ia~SpDGk~lyV  140 (368)
T 1mda_H           69 LAVA--GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP------RFSVGPRVHIIGNCASSACLLF  140 (368)
T ss_dssp             EEEE--CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC------SCCBSCCTTSEEECTTSSCEEE
T ss_pred             ceEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc------ccccCCCcceEEEcCCCCEEEE
Confidence            6888  99999988886          4789999999998854443321000      0000023567899999999998


Q ss_pred             ceeeccceEEE--EeecccccceeeEEeecCCC------CCeeEEEeCCCCCEEE-------------------------
Q 014005          188 LEWTENMATKI--ANVGNSVHARCQKVYPHAHD------FNINSISNNSDCETFV-------------------------  234 (432)
Q Consensus       188 ~~~~~~~~v~i--~d~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~-------------------------  234 (432)
                      .....+..+.+  +|...      ++.+..+..      +.-.-++++++++.++                         
T Consensus       141 an~~~~~~v~V~~iD~~t------v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~  214 (368)
T 1mda_H          141 FLFGSSAAAGLSVPGASD------DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS  214 (368)
T ss_dssp             EECSSSCEEEEEETTTEE------EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCS
T ss_pred             EccCCCCeEEEEEEchhh------ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCC
Confidence            86543566777  88762      222211100      0000112222222222                         


Q ss_pred             ------------EE-cCCeEEEEeCCCCC-ceeeEeecCCCC--cCC-CCcceEEEEEcCCCCcEEEEEeC---------
Q 014005          235 ------------SA-DDLRINLWNLEISD-QCFNIVDMKPSN--MDD-LTEVITSAEFHPIYCNLLAYSSS---------  288 (432)
Q Consensus       235 ------------~~-~d~~i~lwd~~~~~-~~~~~~~~~~~~--~~~-~~~~v~~~~~~p~~~~~l~~~~~---------  288 (432)
                                  .. . +.+.+.|..... .....+.+....  ..+ .......++++|++ +.++.+..         
T Consensus       215 ~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~  292 (368)
T 1mda_H          215 QAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAA  292 (368)
T ss_dssp             CCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSC
T ss_pred             CccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCC-CEEEEEeccccCccccc
Confidence                        11 2 344444443110 111111000000  000 00111226899998 55555432         


Q ss_pred             CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE-EEEee--CCeEEEEec---CcceeEe
Q 014005          289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRD--YMNLKVFRY---EPVMTLS  362 (432)
Q Consensus       289 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~-l~s~~--~~~i~iwd~---~~~~~~~  362 (432)
                      ++.+.++|+.+++.    +..+..              ......++|+|||++ +++..  ++.|.++|+   +.++++.
T Consensus       293 ~~~~~ViD~~t~~v----v~~i~v--------------g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~  354 (368)
T 1mda_H          293 AENTSSVTASVGQT----SGPISN--------------GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EEEEEEEESSSCCE----EECCEE--------------EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             CCCEEEEECCCCeE----EEEEEC--------------CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence            23566999999876    466655              346889999999984 44544  599999999   5556665


Q ss_pred             ecc
Q 014005          363 FCG  365 (432)
Q Consensus       363 ~~~  365 (432)
                      ...
T Consensus       355 vg~  357 (368)
T 1mda_H          355 LDK  357 (368)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.91  E-value=1.1e-07  Score=94.49  Aligned_cols=206  Identities=11%  Similarity=0.090  Sum_probs=126.2

Q ss_pred             cceeEEEEEEcCCCCEEEEEe-----CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          114 EKINRVRWCAAPNGSMFILST-----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                      ..+..++|  ||||++++.+.     ....|++||+.+++.......              ......++|+ +++.++..
T Consensus       129 ~~l~~~~~--SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~--------------~~k~~~~~Ws-Dg~~l~y~  191 (693)
T 3iuj_A          129 TALDQLSF--SRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK--------------DVKFSGISWL-GNEGFFYS  191 (693)
T ss_dssp             CEEEEEEE--CTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE--------------EEESCCCEEE-TTTEEEEE
T ss_pred             EEEEEEEE--CCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC--------------CceeccEEEe-CCCEEEEE
Confidence            56778899  99999988642     235799999999874332110              0124567899 88877766


Q ss_pred             eeec-----------cceEEEEeecccccceeeEEee-cC-CCCCeeEEEeCCCCCEEEEE-c----CCeEEEEeCCCCC
Q 014005          189 EWTE-----------NMATKIANVGNSVHARCQKVYP-HA-HDFNINSISNNSDCETFVSA-D----DLRINLWNLEISD  250 (432)
Q Consensus       189 ~~~~-----------~~~v~i~d~~~~~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~-~----d~~i~lwd~~~~~  250 (432)
                      ....           ...|.+|++.... ......+. .. +......+.++|||++++.. .    ++.|+++|++...
T Consensus       192 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~-~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~  270 (693)
T 3iuj_A          192 SYDKPDGSELSARTDQHKVYFHRLGTAQ-EDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN  270 (693)
T ss_dssp             ESSCCC-------CCCCEEEEEETTSCG-GGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred             EecCcccccccccCCCcEEEEEECCCCc-ccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence            5421           2358888887431 22223331 22 44567889999999988754 2    2589999998433


Q ss_pred             ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC---CeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (432)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  327 (432)
                      .....+       ..+....... +++++..+++....+   +.|..+|+.++...  ..+.+..|             .
T Consensus       271 ~~~~~l-------~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~--~~~~l~~~-------------~  327 (693)
T 3iuj_A          271 APLLTV-------QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA--HWRDLIPE-------------R  327 (693)
T ss_dssp             CCCEEE-------ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG--GCEEEECC-------------C
T ss_pred             CceEEE-------eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc--ccEEEecC-------------C
Confidence            233333       3344444444 666663555555543   57999998875421  02444443             3


Q ss_pred             cceeEEEEcCCCCEEEEe--eC--CeEEEEec--CcceeEe
Q 014005          328 ASISDIKFANDGQHLLSR--DY--MNLKVFRY--EPVMTLS  362 (432)
Q Consensus       328 ~~v~~~~~s~dg~~l~s~--~~--~~i~iwd~--~~~~~~~  362 (432)
                      ..+.  .|++++++|+..  .+  ..|++||+  .....+.
T Consensus       328 ~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~  366 (693)
T 3iuj_A          328 QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVA  366 (693)
T ss_dssp             SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEEC
T ss_pred             CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEee
Confidence            3343  899999988764  33  37899998  3334443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.84  E-value=5.4e-07  Score=79.92  Aligned_cols=204  Identities=10%  Similarity=-0.007  Sum_probs=124.6

Q ss_pred             cceeEEEEEEcCCCC-EEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      .......|  +++++ ++++...++.|..|+.. ++...+...   .           ..+..+++++++..++....  
T Consensus        45 ~~~egp~~--~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~~---~-----------~~~~gl~~d~dG~l~v~~~~--  105 (305)
T 3dr2_A           45 TWSEGPAW--WEAQRTLVWSDLVGRRVLGWRED-GTVDVLLDA---T-----------AFTNGNAVDAQQRLVHCEHG--  105 (305)
T ss_dssp             SSEEEEEE--EGGGTEEEEEETTTTEEEEEETT-SCEEEEEES---C-----------SCEEEEEECTTSCEEEEETT--
T ss_pred             cCccCCeE--eCCCCEEEEEECCCCEEEEEeCC-CCEEEEeCC---C-----------CccceeeECCCCCEEEEECC--
Confidence            45678899  78888 56666778999999984 443332221   1           45677889999886655333  


Q ss_pred             cceEEEEeecccccceeeE-EeecCCCCCeeEEEeCCCCCEEEE----E-c-------------CCeEEEEeCCCCCcee
Q 014005          193 NMATKIANVGNSVHARCQK-VYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQCF  253 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~----~-~-------------d~~i~lwd~~~~~~~~  253 (432)
                      ++.|..|+...  ....+. .........++.++++++|++.++    | .             .+.|..+|.+ +++. 
T Consensus       106 ~~~v~~~~~~g--~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~-~g~~-  181 (305)
T 3dr2_A          106 RRAITRSDADG--QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD-GSPL-  181 (305)
T ss_dssp             TTEEEEECTTS--CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS-SCCC-
T ss_pred             CCEEEEECCCC--CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC-CCcE-
Confidence            46788887642  111111 110111235778999999998886    3 2             2456667665 2332 


Q ss_pred             eEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC------CeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005          254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (432)
Q Consensus       254 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  327 (432)
                      ..+       . .....+.++|+|++ +.|+.+...      +.|.+||+..+.+..  ...+..-            ..
T Consensus       182 ~~~-------~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~--~~~~~~~------------~~  238 (305)
T 3dr2_A          182 QRM-------A-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHD--RRHFASV------------PD  238 (305)
T ss_dssp             EEE-------E-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEE--EEEEECC------------SS
T ss_pred             EEE-------e-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccC--CeEEEEC------------CC
Confidence            222       1 22346789999999 777776655      789999987543100  1122110            02


Q ss_pred             cceeEEEEcCCCCEEEEeeCCeEEEEec--CcceeEeec
Q 014005          328 ASISDIKFANDGQHLLSRDYMNLKVFRY--EPVMTLSFC  364 (432)
Q Consensus       328 ~~v~~~~~s~dg~~l~s~~~~~i~iwd~--~~~~~~~~~  364 (432)
                      .....++++++|++.++. .+.|.+||.  +.+..+..+
T Consensus       239 ~~pdgi~~d~~G~lwv~~-~~gv~~~~~~g~~~~~~~~~  276 (305)
T 3dr2_A          239 GLPDGFCVDRGGWLWSSS-GTGVCVFDSDGQLLGHIPTP  276 (305)
T ss_dssp             SCCCSEEECTTSCEEECC-SSEEEEECTTSCEEEEEECS
T ss_pred             CCCCeEEECCCCCEEEec-CCcEEEECCCCCEEEEEECC
Confidence            345678999999965554 456999998  555555443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.84  E-value=9.8e-07  Score=80.49  Aligned_cols=208  Identities=10%  Similarity=0.090  Sum_probs=121.9

Q ss_pred             eeEEEEEEcCCCCEEEEEeCC------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          116 INRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       116 v~~l~~~~s~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                      -..+..  .|+| .++++..+      |.|.+.|.++.++.........+          ..--..+.|+|+.+.+++..
T Consensus       140 Ph~~~~--~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~----------~~~~Yd~~~~p~~~~mvsS~  206 (462)
T 2ece_A          140 LHTVHC--GPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGD----------QYLAYDFWWNLPNEVLVSSE  206 (462)
T ss_dssp             EEEEEE--CSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTT----------CCCCCCEEEETTTTEEEECB
T ss_pred             ccceeE--CCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCC----------ccccceEEECCCCCEEEEcc
Confidence            344566  7899 77776555      78999999988755443322111          02233466688888777774


Q ss_pred             ee-----------------ccceEEEEeecccccceeeEEeecC-CCCCeeEEEe--CCCCCEEEEE-c------CCeEE
Q 014005          190 WT-----------------ENMATKIANVGNSVHARCQKVYPHA-HDFNINSISN--NSDCETFVSA-D------DLRIN  242 (432)
Q Consensus       190 ~~-----------------~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~--~~~~~~l~~~-~------d~~i~  242 (432)
                      ..                 .+..|.+||+.   +.+.++++..+ .......+.|  +|+++++.++ .      +++|.
T Consensus       207 wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~---~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~  283 (462)
T 2ece_A          207 WAVPNTIEDGLKLEHLKDRYGNRIHFWDLR---KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIW  283 (462)
T ss_dssp             CCCHHHHTTCCCTTTHHHHSCCEEEEEETT---TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEE
T ss_pred             CcCccccccccchhhhhhccCCEEEEEECC---CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEE
Confidence            21                 15799999998   55666666333 2234455655  9999987766 5      45787


Q ss_pred             EEeCCCCCc--eeeEeecCCCCcCC-----------CCcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccce
Q 014005          243 LWNLEISDQ--CFNIVDMKPSNMDD-----------LTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSAR  308 (432)
Q Consensus       243 lwd~~~~~~--~~~~~~~~~~~~~~-----------~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~  308 (432)
                      +|..+ .+.  ..+.+++......+           .......+.++||+ ++|.++. ..+.|.+||+..... .+.+.
T Consensus       284 v~~~d-~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG-rfLYVSnrg~d~VavfdV~d~~~-~~lv~  360 (462)
T 2ece_A          284 LWFYE-DGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD-KFLYLSLWGIGEVRQYDISNPFK-PVLTG  360 (462)
T ss_dssp             EEEEE-TTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS-CEEEEEETTTTEEEEEECSSTTS-CEEEE
T ss_pred             EEEec-CCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC-CEEEEEeCCCCEEEEEEecCCCC-cEEEE
Confidence            77766 232  12222222211111           12457889999999 7666665 578999999863321 11122


Q ss_pred             eeccc-c----cccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005          309 ILRDA-A----ESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (432)
Q Consensus       309 ~~~~h-~----~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~  346 (432)
                      .+... .    ..+...    .....-..++++|||++|..++
T Consensus       361 ~I~tGG~~~~~~~~~G~----~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          361 KVKLGGIFHRADHPAGH----KLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEECBTTTTCBCCTTSC----CCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEeCCeeccccccccc----cCCCCCCEEEEcCCCCEEEEEc
Confidence            22210 0    000000    0012357899999999998865

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.80  E-value=1.8e-06  Score=77.35  Aligned_cols=190  Identities=14%  Similarity=0.055  Sum_probs=116.7

Q ss_pred             CCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      ....+.++.++|+|+++++. .+ .|.+||.++++..                            .+......       
T Consensus        88 ~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~----------------------------~~~~~~~~-------  130 (326)
T 2ghs_A           88 LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT----------------------------LHAELESD-------  130 (326)
T ss_dssp             CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE----------------------------EEECSSTT-------
T ss_pred             CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEE----------------------------EEeeCCCC-------
Confidence            35679999999999977764 33 4889998776421                            11111000       


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeC------CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTN------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                      .....+.++.+  +++|+++++...      .+.|..++  +++...+...              ......++|++++..
T Consensus       131 ~~~~~~~~i~~--d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~--------------~~~~~~i~~s~dg~~  192 (326)
T 2ghs_A          131 LPGNRSNDGRM--HPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD--------------ISIPNSICFSPDGTT  192 (326)
T ss_dssp             CTTEEEEEEEE--CTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--------------ESSEEEEEECTTSCE
T ss_pred             CCCCCCCCEEE--CCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--------------CcccCCeEEcCCCCE
Confidence            00046889999  899987765542      23455555  4443332211              023457889999986


Q ss_pred             eecceeeccceEEEEeec--cc-cc--ceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeec
Q 014005          185 GYHLEWTENMATKIANVG--NS-VH--ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM  258 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~--~~-~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~  258 (432)
                      ++.... .++.|.+|++.  .. ..  .+....+ ......+..++++++|++.++. .++.|..||..  ++.+..+  
T Consensus       193 lyv~~~-~~~~I~~~d~~~~~Gl~~~~~~~~~~~-~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~--g~~~~~i--  266 (326)
T 2ghs_A          193 GYFVDT-KVNRLMRVPLDARTGLPTGKAEVFIDS-TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GNHIARY--  266 (326)
T ss_dssp             EEEEET-TTCEEEEEEBCTTTCCBSSCCEEEEEC-TTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CCEEEEE--
T ss_pred             EEEEEC-CCCEEEEEEcccccCCcccCceEEEEC-CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC--CCEEEEE--
Confidence            655432 15789999975  21 11  1122222 2344567889999999877777 67899999985  4455544  


Q ss_pred             CCCCcCCCCcceEEEEEc-CCCCcEEEEEe
Q 014005          259 KPSNMDDLTEVITSAEFH-PIYCNLLAYSS  287 (432)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~  287 (432)
                           ..+...+++++|+ |++ ..|+.++
T Consensus       267 -----~~~~~~~~~~af~g~d~-~~L~vt~  290 (326)
T 2ghs_A          267 -----EVPGKQTTCPAFIGPDA-SRLLVTS  290 (326)
T ss_dssp             -----ECSCSBEEEEEEESTTS-CEEEEEE
T ss_pred             -----ECCCCCcEEEEEecCCC-CEEEEEe
Confidence                 3344569999998 887 5554444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.80  E-value=3.3e-07  Score=84.38  Aligned_cols=222  Identities=10%  Similarity=0.060  Sum_probs=125.2

Q ss_pred             EEEEcCCCCEEEEec----------ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecC-Ccccc
Q 014005           37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD  105 (432)
Q Consensus        37 ~~~fsp~g~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h-~~~~~  105 (432)
                      .+.++|+|++|.++.          .++.|.++|..+.+..                           .++.-- .+.+.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv---------------------------~~I~v~g~~r~~  174 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPRFL  174 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------------------------EEEEETTCCCCC
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE---------------------------EEEECCCccccc
Confidence            799999999888775          3678999999887643                           222110 00000


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEeC--CCeEEEEEccCcceeeeeecCCCCccccc-----ccccccccc-----
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSE-----NTLLAEKNF-----  173 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i-----  173 (432)
                            .......+.+  +|||++++++..  ++.|.+.|+.+++............+...     .....++.+     
T Consensus       175 ------~g~~P~~~~~--spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~  246 (426)
T 3c75_H          175 ------VGTYQWMNAL--TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDF  246 (426)
T ss_dssp             ------BSCCGGGSEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEEC
T ss_pred             ------cCCCcceEEE--cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEEC
Confidence                  0012345677  889988888764  57899999988764332222100000000     000000000     


Q ss_pred             ---------------------ccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecC---------CCCCeeE
Q 014005          174 ---------------------MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHA---------HDFNINS  223 (432)
Q Consensus       174 ---------------------~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~---------~~~~i~~  223 (432)
                                           ..+.+.+++..++....  .+.+.+.|.... .......+...         .......
T Consensus       247 ~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~--~g~V~ViD~~~~-~~~v~~~~~~~~~~~i~~g~~p~g~~~  323 (426)
T 3c75_H          247 ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY--TGKIFQADLTAE-GATFRAPIEALTEAERADDWRPGGWQQ  323 (426)
T ss_dssp             CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT--TSEEEEEEECSS-CEEECCCEESSCTTTGGGTEEECSSSC
T ss_pred             CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC--CCcEEEEeccCC-ceEEeeeeeeccccccccccccCCcee
Confidence                                 01122333333332222  456777776421 10111111000         0112234


Q ss_pred             EEeCCCCCEEEEE-c----------CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCc-EEEEEe-CCC
Q 014005          224 ISNNSDCETFVSA-D----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSS-SRG  290 (432)
Q Consensus       224 ~~~~~~~~~l~~~-~----------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~-~dg  290 (432)
                      ++++|+++.+.+. .          ++.|.++|.. +.+.+..+.+        .....++.|+|++ + +++++. .++
T Consensus       324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~-T~kvv~~I~v--------g~~P~gia~spDg-~~~lyv~n~~s~  393 (426)
T 3c75_H          324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE-TGERINKIEL--------GHEIDSINVSQDA-EPLLYALSAGTQ  393 (426)
T ss_dssp             EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT-TCCEEEEEEE--------EEEECEEEECCSS-SCEEEEEETTTT
T ss_pred             eEEcCCCCEEEEEecccccccccCCCCEEEEEECC-CCeEEEEEEC--------CCCcCeEEEccCC-CEEEEEEcCCCC
Confidence            7899998877766 3          2479999999 6676666521        1247899999999 6 777777 599


Q ss_pred             eEEEEEccccccccccceee
Q 014005          291 FVRLVDMRQSALCDHSARIL  310 (432)
Q Consensus       291 ~i~iwd~~~~~~~~~~~~~~  310 (432)
                      .|.++|+.+++.    ++.+
T Consensus       394 ~VsVID~~t~kv----v~tI  409 (426)
T 3c75_H          394 TLHIYDAATGEE----LRSV  409 (426)
T ss_dssp             EEEEEETTTCCE----EEEE
T ss_pred             eEEEEECCCCCE----EEEe
Confidence            999999999886    4554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.77  E-value=1.7e-08  Score=92.22  Aligned_cols=184  Identities=10%  Similarity=0.000  Sum_probs=93.6

Q ss_pred             CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEE
Q 014005           43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC  122 (432)
Q Consensus        43 ~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~  122 (432)
                      ++..+++++.||.|..||..+++..                           ..+.. .             .+.+..+ 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~---------------------------W~~~~-~-------------~~~s~p~-   45 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIK---------------------------WTLKE-D-------------PVLQVPT-   45 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEE---------------------------EEEEC-C-------------CSCCCC--
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEE---------------------------EEecC-C-------------Cceecce-
Confidence            5778999999999999999988743                           33332 1             1222223 


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccccc-ccCCCCCcceecceeeccceEEEEee
Q 014005          123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN-EHNPPSFAHGYHLEWTENMATKIANV  201 (432)
Q Consensus       123 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~v~i~d~  201 (432)
                       ..++..+++++.|+.|+.||..+++........  .          ...+.. .... .+..++.++.  ++.+..||.
T Consensus        46 -~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~--~----------~~~~~~sp~~~-~~~~v~~g~~--dg~v~a~D~  109 (369)
T 2hz6_A           46 -HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT--I----------PELVQASPCRS-SDGILYMGKK--QDIWYVIDL  109 (369)
T ss_dssp             -----CCEEECTTTCCEEEC-----CCSEECSCC--H----------HHHHTTCSCC------CCCCEE--EEEEEEECC
T ss_pred             -EcCCCEEEEeCCCCEEEEEECCCCceeeeeecc--C----------ccccccCceEe-cCCEEEEEeC--CCEEEEEEC
Confidence             356767888889999999999887643221111  1          011111 1111 3445666666  889999999


Q ss_pred             cccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCC-
Q 014005          202 GNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-  279 (432)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-  279 (432)
                      .   +++.+..+ ..+.    ...++|++..++++ .|+.|+.||.+ +++....+..     ..    .....++++. 
T Consensus       110 ~---tG~~~w~~-~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~-tG~~~W~~~~-----~~----~~~~~~~~~~~  171 (369)
T 2hz6_A          110 L---TGEKQQTL-SSAF----ADSLSPSTSLLYLGRTEYTITMYDTK-TRELRWNATY-----FD----YAASLPEDDVD  171 (369)
T ss_dssp             C------------------------------EEEEEEEEEEECCCSS-SSSCCCEEEE-----EE----ECCBCCCCCTT
T ss_pred             C---CCcEEEEe-cCCC----cccccccCCEEEEEecCCEEEEEECC-CCCEEEeEec-----cc----ccCccccCCcc
Confidence            8   66666655 2222    23456677888888 89999999998 5554433310     11    1122233321 


Q ss_pred             -CcEEEEEeCCCeEEEEEcccccc
Q 014005          280 -CNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       280 -~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                       ...+++++.||.|..||.++|+.
T Consensus       172 ~~~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          172 YKMSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             CCCCEEEEETSCEEEEECTTTCCE
T ss_pred             ccceEEEECCCCEEEEEECCCCcE
Confidence             03466688999999999999886

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.75  E-value=6.3e-07  Score=81.05  Aligned_cols=76  Identities=4%  Similarity=-0.129  Sum_probs=56.8

Q ss_pred             EEeCCCCCEEEEE-c-C--------CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe-CCCeE
Q 014005          224 ISNNSDCETFVSA-D-D--------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFV  292 (432)
Q Consensus       224 ~~~~~~~~~l~~~-~-d--------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i  292 (432)
                      ++++|+++.+.++ . +        +.+.++|+. +.+.+..+       .. ......++|+|++..++++.. .++.|
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~-t~~vv~~i-------~v-g~~p~gi~~s~Dg~~l~va~~~~~~~V  339 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS-VGQTSGPI-------SN-GHDSDAIIAAQDGASDNYANSAGTEVL  339 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS-SCCEEECC-------EE-EEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECC-CCeEEEEE-------EC-CCCcceEEECCCCCEEEEEccCCCCeE
Confidence            7899999888876 5 3        367799999 56665544       21 125889999999944677777 59999


Q ss_pred             EEEEccccccccccceeecc
Q 014005          293 RLVDMRQSALCDHSARILRD  312 (432)
Q Consensus       293 ~iwd~~~~~~~~~~~~~~~~  312 (432)
                      .++|+.+++.    ++.+..
T Consensus       340 sVID~~t~kv----v~~I~v  355 (368)
T 1mda_H          340 DIYDAASDQD----QSSVEL  355 (368)
T ss_dssp             EEEESSSCEE----EEECCC
T ss_pred             EEEECCCCcE----EEEEEC
Confidence            9999999886    566655

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.70  E-value=3.5e-06  Score=72.04  Aligned_cols=204  Identities=10%  Similarity=0.062  Sum_probs=125.7

Q ss_pred             eeEEEEEEcCCCCEEEEEeC--CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          116 INRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       116 v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      ...+.|  ++++.++++.+.  ++.|.+.|+.+++......+..+.            ....+++  ++..++.... .+
T Consensus        23 ~~Gl~~--~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~------------fgeGi~~--~g~~lyv~t~-~~   85 (266)
T 2iwa_A           23 TQGLVY--AENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY------------FGEGLTL--LNEKLYQVVW-LK   85 (266)
T ss_dssp             EEEEEE--CSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC------------CEEEEEE--ETTEEEEEET-TC
T ss_pred             cccEEE--eCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc------------ceEEEEE--eCCEEEEEEe-cC
Confidence            578999  888755555543  589999999999865543332211            0112222  2334444332 27


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (432)
                      +.+.++|..   +.+.+..+..+ ...  ...++++++.++++ .++.|.++|.+ +.+....+.+...  ...-..++.
T Consensus        86 ~~v~viD~~---t~~v~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~-t~~v~~~I~Vg~~--~~p~~~~ne  156 (266)
T 2iwa_A           86 NIGFIYDRR---TLSNIKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPH-TFKLIKKHNVKYN--GHRVIRLNE  156 (266)
T ss_dssp             SEEEEEETT---TTEEEEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECTT-TCCEEEEEECEET--TEECCCEEE
T ss_pred             CEEEEEECC---CCcEEEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEECC-CCcEEEEEEECCC--Cccccccee
Confidence            789999988   66777777333 112  23355678888888 88899999998 5555555522110  011124678


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccccc----CCccceeeeecceeEEEEcCCCCEEE-EeeC
Q 014005          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH----GSKSFFTEIIASISDIKFANDGQHLL-SRDY  347 (432)
Q Consensus       273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~----~~~~~~~~~~~~v~~~~~s~dg~~l~-s~~~  347 (432)
                      +.|. ++ .+.+....++.|.+.|..+++.    +..+.-....+    ...    ......+.++|+|+++.|. ++..
T Consensus       157 le~~-dg-~lyvn~~~~~~V~vID~~tg~V----~~~I~~~g~~~~~~~~~~----~~~~v~nGIa~~~~~~~lfVTgk~  226 (266)
T 2iwa_A          157 LEYI-NG-EVWANIWQTDCIARISAKDGTL----LGWILLPNLRKKLIDEGF----RDIDVLNGIAWDQENKRIFVTGKL  226 (266)
T ss_dssp             EEEE-TT-EEEEEETTSSEEEEEETTTCCE----EEEEECHHHHHHHHHTTC----TTCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEEE-CC-EEEEecCCCCeEEEEECCCCcE----EEEEECCCcccccccccc----cccCceEEEEEcCCCCEEEEECCC
Confidence            8888 66 7766666788999999999886    34443200000    000    0013568999999986555 5544


Q ss_pred             -CeEEEEec
Q 014005          348 -MNLKVFRY  355 (432)
Q Consensus       348 -~~i~iwd~  355 (432)
                       +.+..-++
T Consensus       227 ~~~v~~i~l  235 (266)
T 2iwa_A          227 WPKLFEIKL  235 (266)
T ss_dssp             CSEEEEEEE
T ss_pred             CCeEEEEEE
Confidence             88888888

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.70  E-value=5.2e-07  Score=85.24  Aligned_cols=240  Identities=10%  Similarity=0.023  Sum_probs=147.0

Q ss_pred             CCCCEEEEecc-cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeec-CCccccccchhhhhcceeEE
Q 014005           42 KTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIEEKINRV  119 (432)
Q Consensus        42 p~g~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-h~~~~~~~~~~~~~~~v~~l  119 (432)
                      +||++|..... ++.|.+.|+++.+..                           ..+.- ..            .....+
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~---------------------------~ii~ip~g------------~~phg~  139 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCD---------------------------AILEIPNA------------KGIHGL  139 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEE---------------------------EEEECSSC------------CSEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEe---------------------------eEEeCCCC------------CCCcce
Confidence            47888776554 557999999886532                           21211 11            345667


Q ss_pred             EEEEc-CCCCEEEEEe------------------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC
Q 014005          120 RWCAA-PNGSMFILST------------------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP  180 (432)
Q Consensus       120 ~~~~s-~~~~~l~s~~------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  180 (432)
                      ++. + |++.+++.++                  .++.+.+.|..+.+........              +....++.++
T Consensus       140 ~~~-~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vg--------------g~pd~~~~sp  204 (595)
T 1fwx_A          140 RPQ-KWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS--------------GNLDNCDADY  204 (595)
T ss_dssp             EEC-CSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEES--------------SCCCCEEECS
T ss_pred             eee-ecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeC--------------CCccceEECC
Confidence            763 3 7888888884                  2457889999887644333322              1234455666


Q ss_pred             CCcceecceeec------------------------------------cceEEEEeeccccccee-eEEeecCCCCCeeE
Q 014005          181 SFAHGYHLEWTE------------------------------------NMATKIANVGNSVHARC-QKVYPHAHDFNINS  223 (432)
Q Consensus       181 ~~~~~~~~~~~~------------------------------------~~~v~i~d~~~~~~~~~-~~~~~~~~~~~i~~  223 (432)
                      ++++++..+..+                                    -+.|.+.|.... .++. +..++.  .....+
T Consensus       205 dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~-~~~~~~~~Ipv--g~~PhG  281 (595)
T 1fwx_A          205 EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKE-ASSLFTRYIPI--ANNPHG  281 (595)
T ss_dssp             SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG-GCCSSEEEEEE--ESSCCC
T ss_pred             CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCccc-CCceeEEEEec--CCCceE
Confidence            666666555321                                    124677777631 0222 333311  235678


Q ss_pred             EEeCCCCCEEEEE--cCCeEEEEeCCCCCc-----------eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC
Q 014005          224 ISNNSDCETFVSA--DDLRINLWNLEISDQ-----------CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG  290 (432)
Q Consensus       224 ~~~~~~~~~l~~~--~d~~i~lwd~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  290 (432)
                      +.++|||++++++  .+.+|.++|++....           ....        ..-......++|+|+| ....+.-.|+
T Consensus       282 v~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~--------v~vG~gP~h~aF~~dG-~aY~t~~lds  352 (595)
T 1fwx_A          282 CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE--------PELGLGPLHTAFDGRG-NAYTSLFLDS  352 (595)
T ss_dssp             EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC--------CBCCSCEEEEEECTTS-EEEEEETTTT
T ss_pred             EEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE--------cCCCCCcceEEECCCC-eEEEEEecCC
Confidence            9999999988876  799999999983210           1111        1223458899999999 8777888999


Q ss_pred             eEEEEEccccc------cccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC---CeE-----------
Q 014005          291 FVRLVDMRQSA------LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNL-----------  350 (432)
Q Consensus       291 ~i~iwd~~~~~------~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~---~~i-----------  350 (432)
                      .|.+||+.++.      .....+..+..|.        -++|...-.++.++|||++|+++..   .++           
T Consensus       353 qV~kwdi~~a~~~~~g~~~~~vi~kidV~y--------qpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~  424 (595)
T 1fwx_A          353 QVVKWNIEDAIRAYAGEKVDPIKDKLDVHY--------QPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPEND  424 (595)
T ss_dssp             EEEEEEHHHHHHHHHTCSCCCEEEEEECSS--------CEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEE
T ss_pred             cEEEEEhhHhhhhhcccccceeEEEeeccc--------ccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcc
Confidence            99999998621      1112245554430        0112233344567899999998532   455           


Q ss_pred             EEEec
Q 014005          351 KVFRY  355 (432)
Q Consensus       351 ~iwd~  355 (432)
                      .++|+
T Consensus       425 ql~di  429 (595)
T 1fwx_A          425 QLIDI  429 (595)
T ss_dssp             EEEEC
T ss_pred             eEEEc
Confidence            88998

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.69  E-value=1.8e-08  Score=92.10  Aligned_cols=177  Identities=8%  Similarity=-0.057  Sum_probs=89.2

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeeccc
Q 014005          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  204 (432)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~  204 (432)
                      -++..+++++.|+.|..||..+++.......               +.+....+..++..++.++.  ++.+..||..  
T Consensus         7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---------------~~~~s~p~~~~g~~~v~~s~--dg~l~a~d~~--   67 (369)
T 2hz6_A            7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE---------------DPVLQVPTHVEEPAFLPDPN--DGSLYTLGSK--   67 (369)
T ss_dssp             -CTTEEEEEETTSEEEEEETTTCCEEEEEEC---------------CCSCCCC-----CCEEECTT--TCCEEEC-----
T ss_pred             eeCCEEEEEcCCCEEEEEECCCCCEEEEecC---------------CCceecceEcCCCEEEEeCC--CCEEEEEECC--
Confidence            3577899999999999999999885433222               12333334455555555544  8999999987  


Q ss_pred             ccceeeEEeecCCCC-CeeE-EEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCc
Q 014005          205 VHARCQKVYPHAHDF-NINS-ISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  281 (432)
Q Consensus       205 ~~~~~~~~~~~~~~~-~i~~-~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  281 (432)
                       +++.+..+ ..+.. .+.+ ..+. .+..++++ .|+.++.||.+ +++....+       ..+.    ...++|++ .
T Consensus        68 -tG~~~w~~-~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~-tG~~~w~~-------~~~~----~~~~~p~~-~  131 (369)
T 2hz6_A           68 -NNEGLTKL-PFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLL-TGEKQQTL-------SSAF----ADSLSPST-S  131 (369)
T ss_dssp             ---CCSEEC-SCCHHHHHTTCSCC------CCCCEEEEEEEEECCC----------------------------------
T ss_pred             -CCceeeee-eccCccccccCceEe-cCCEEEEEeCCCEEEEEECC-CCcEEEEe-------cCCC----cccccccC-C
Confidence             44444443 21111 1111 1111 34456667 89999999999 56655443       2221    23456777 7


Q ss_pred             EEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCC----CCEEEEeeCCeEEEEec
Q 014005          282 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND----GQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       282 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d----g~~l~s~~~~~i~iwd~  355 (432)
                      .+++++.|+.|+.||.++|+..    ..+..+               ......++++    +..++.+.++.++.||.
T Consensus       132 ~v~~~~~dg~v~a~d~~tG~~~----W~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~  190 (369)
T 2hz6_A          132 LLYLGRTEYTITMYDTKTRELR----WNATYF---------------DYAASLPEDDVDYKMSHFVSNGDGLVVTVDS  190 (369)
T ss_dssp             -EEEEEEEEEEECCCSSSSSCC----CEEEEE---------------EECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred             EEEEEecCCEEEEEECCCCCEE----EeEecc---------------cccCccccCCccccceEEEECCCCEEEEEEC
Confidence            8888999999999999998863    333321               1122333333    44444445588999988

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.68  E-value=3.8e-05  Score=66.42  Aligned_cols=195  Identities=8%  Similarity=0.013  Sum_probs=114.8

Q ss_pred             cceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          114 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      .....++|  ++++..|+.+ ...+.|..+++.++....+....  .           .....+++++++..++.... .
T Consensus        36 ~~~~gi~~--d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~--~-----------~~p~~ia~d~~~~~lyv~d~-~   99 (267)
T 1npe_A           36 KVIIGLAF--DCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD--L-----------GSPEGIALDHLGRTIFWTDS-Q   99 (267)
T ss_dssp             EEEEEEEE--ETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT--C-----------CCEEEEEEETTTTEEEEEET-T
T ss_pred             CcEEEEEE--ecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC--C-----------CCccEEEEEecCCeEEEEEC-C
Confidence            45678999  7765555554 55789999999766543332111  0           24567778876555544332 1


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--c--CCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      .+.|.++++...   . ...+..........++++|++..+..+  .  .+.|..++++  +.....+.      .....
T Consensus       100 ~~~I~~~~~~g~---~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d--g~~~~~~~------~~~~~  167 (267)
T 1npe_A          100 LDRIEVAKMDGT---Q-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD--GTNRRILA------QDNLG  167 (267)
T ss_dssp             TTEEEEEETTSC---S-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT--SCCCEEEE------CTTCS
T ss_pred             CCEEEEEEcCCC---C-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC--CCCcEEEE------ECCCC
Confidence            567888887632   1 122212223567899999976665544  3  4688888887  22222220      12224


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eC
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY  347 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~  347 (432)
                      ....++++|++..+.++-...+.|..+|+.....    ...+..              ......++.. ++.++++. ..
T Consensus       168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~----~~~~~~--------------~~~P~gi~~d-~~~lyva~~~~  228 (267)
T 1npe_A          168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR----RKVLEG--------------LQYPFAVTSY-GKNLYYTDWKT  228 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE----EEEEEC--------------CCSEEEEEEE-TTEEEEEETTT
T ss_pred             CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce----EEEecC--------------CCCceEEEEe-CCEEEEEECCC
Confidence            5789999998734555555678999999875432    122222              1233456654 33333343 33


Q ss_pred             CeEEEEec
Q 014005          348 MNLKVFRY  355 (432)
Q Consensus       348 ~~i~iwd~  355 (432)
                      +.|..+|.
T Consensus       229 ~~v~~~d~  236 (267)
T 1npe_A          229 NSVIAMDL  236 (267)
T ss_dssp             TEEEEEET
T ss_pred             CeEEEEeC
Confidence            89999998

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.66  E-value=1.2e-05  Score=68.66  Aligned_cols=204  Identities=6%  Similarity=-0.073  Sum_probs=129.7

Q ss_pred             cEEEEEEcCCCCEEEEecc--cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           34 IVSAIEFDKTGDYLAVGDR--GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ....+.|+|+|.++++.+.  ++.|++.|+.+++..                           ..+.-...         
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~---------------------------~~i~l~~~---------   65 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE---------------------------NIHKMDDS---------   65 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE---------------------------EEEECCTT---------
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE---------------------------EEEecCCC---------
Confidence            4678999998765555443  579999999998743                           22221110         


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                        .....+++  . .++..++.-.++.+.++|..+.+........ .+              ....+++++..++.... 
T Consensus        66 --~fgeGi~~--~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~--------------~g~glt~Dg~~l~vs~g-  124 (266)
T 2iwa_A           66 --YFGEGLTL--L-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK--------------DGWGLATDGKILYGSDG-  124 (266)
T ss_dssp             --CCEEEEEE--E-TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS--------------SCCEEEECSSSEEEECS-
T ss_pred             --cceEEEEE--e-CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC--------------CeEEEEECCCEEEEECC-
Confidence              12234555  3 2344445556899999999987744433322 11              12335567777766543 


Q ss_pred             ccceEEEEeecccccceeeEEeecCC----CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCC-----
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAH----DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-----  261 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~-----  261 (432)
                       ++.+.+.|..   +.+..+.+.-+.    -..++.+.+. ++..++.. .++.|.+.|.. +++....++....     
T Consensus       125 -s~~l~viD~~---t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~-tg~V~~~I~~~g~~~~~~  198 (266)
T 2iwa_A          125 -TSILYEIDPH---TFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAK-DGTLLGWILLPNLRKKLI  198 (266)
T ss_dssp             -SSEEEEECTT---TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETT-TCCEEEEEECHHHHHHHH
T ss_pred             -CCeEEEEECC---CCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECC-CCcEEEEEECCCcccccc
Confidence             7799999987   445555542221    1246778887 67655555 78999999999 7777777754210     


Q ss_pred             -CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccc
Q 014005          262 -NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS  300 (432)
Q Consensus       262 -~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~  300 (432)
                       .........+.++|+|++..+++++...+.+...++...
T Consensus       199 ~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          199 DEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             HTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             cccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence             001112457899999998667777878899999998754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.66  E-value=2.5e-05  Score=67.56  Aligned_cols=222  Identities=11%  Similarity=0.055  Sum_probs=132.3

Q ss_pred             cEEEEEEcCCCCEEE-EecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005           34 IVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  112 (432)
                      .+..++|++++..|. +-..++.|..++.++....                           ..+....           
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~---------------------------~~~~~~~-----------   78 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT---------------------------TIIRQDL-----------   78 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE---------------------------EEECTTC-----------
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE---------------------------EEEECCC-----------
Confidence            567899999765554 4445679999998764311                           1111111           


Q ss_pred             hcceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          113 EEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                       .....+++  ++++..++.+ ...+.|.++++.......+....  .           .....+++++++..++.....
T Consensus        79 -~~p~~ia~--d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~--~-----------~~P~~i~vd~~~g~lyv~~~~  142 (267)
T 1npe_A           79 -GSPEGIAL--DHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG--L-----------VNPRGIVTDPVRGNLYWTDWN  142 (267)
T ss_dssp             -CCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--C-----------SSEEEEEEETTTTEEEEEECC
T ss_pred             -CCccEEEE--EecCCeEEEEECCCCEEEEEEcCCCCEEEEEECC--C-----------CCccEEEEeeCCCEEEEEECC
Confidence             35678899  7765555544 55688999998754433222111  0           234677888866555544432


Q ss_pred             c-cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          192 E-NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       192 ~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      . .+.|..+++...    ..+.+..........+++++++..|..+  ..+.|..+|.+ .......+       .. ..
T Consensus       143 ~~~~~I~~~~~dg~----~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~-g~~~~~~~-------~~-~~  209 (267)
T 1npe_A          143 RDNPKIETSHMDGT----NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA-QPGRRKVL-------EG-LQ  209 (267)
T ss_dssp             SSSCEEEEEETTSC----CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-EEEEEEEE-------EC-CC
T ss_pred             CCCcEEEEEecCCC----CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecC-CCceEEEe-------cC-CC
Confidence            1 356777776532    2222212334568899999987777665  67899999998 33222222       11 12


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~  340 (432)
                      ....++.. .+ .++++....+.|..+|..+++.    +..+...            .......+++.|++.
T Consensus       210 ~P~gi~~d-~~-~lyva~~~~~~v~~~d~~~g~~----~~~i~~g------------~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          210 YPFAVTSY-GK-NLYYTDWKTNSVIAMDLAISKE----MDTFHPH------------KQTRLYGITIALSQC  263 (267)
T ss_dssp             SEEEEEEE-TT-EEEEEETTTTEEEEEETTTTEE----EEEECCS------------SCCCCCCEEEECSCC
T ss_pred             CceEEEEe-CC-EEEEEECCCCeEEEEeCCCCCc----eEEEccc------------cccccceeeecCccC
Confidence            34566665 33 5555555678999999988775    3554431            012466788888764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.64  E-value=1.2e-05  Score=79.49  Aligned_cols=159  Identities=10%  Similarity=0.007  Sum_probs=93.0

Q ss_pred             CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC---CCcceecceee----ccceEEEE
Q 014005          127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP---SFAHGYHLEWT----ENMATKIA  199 (432)
Q Consensus       127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~----~~~~v~i~  199 (432)
                      +..+++++.|+.|..+|..+++..-........           .....+..+|   ++.. +.+...    .++.+..+
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~-----------~~~~~~~~sP~v~~g~v-~vg~~~~~~~~~g~v~a~  188 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADH-----------KRSYTITGAPRVVNGKV-VIGNGGAEFGVRGYVTAY  188 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCT-----------TSCCBCCSCCEEETTEE-EECCBCTTTCCBCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCC-----------CCCccccCCcEEECCEE-EEEeCCCccCCCCEEEEE
Confidence            557888889999999999999854332221010           0011111122   2222 222211    26788899


Q ss_pred             eecccccceeeEEeecCC------------------------------CCCeeEEEeCCCCCEEEEE-cCC---------
Q 014005          200 NVGNSVHARCQKVYPHAH------------------------------DFNINSISNNSDCETFVSA-DDL---------  239 (432)
Q Consensus       200 d~~~~~~~~~~~~~~~~~------------------------------~~~i~~~~~~~~~~~l~~~-~d~---------  239 (432)
                      |..   +++.+..+....                              ......++++|+...+..+ .++         
T Consensus       189 D~~---tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~  265 (689)
T 1yiq_A          189 DAE---TGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRS  265 (689)
T ss_dssp             ETT---TCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHH
T ss_pred             ECC---CCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCC
Confidence            988   666665542110                              0111257888888888888 665         


Q ss_pred             ----------eEEEEeCCCCCceeeEeecCCCCcCC--CCcceEEEEEcCCCCc---EEEEEeCCCeEEEEEcccccc
Q 014005          240 ----------RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYCN---LLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       240 ----------~i~lwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~---~l~~~~~dg~i~iwd~~~~~~  302 (432)
                                .|..+|.+ +++....++..+.....  ....+.......+| +   .++.++.+|.++++|.++|++
T Consensus       266 ~~~gd~~y~~~v~AlD~~-TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G-~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          266 QAKGDNLFLSSIVAVNAD-TGEYVWHYQTTPGDAWDYTATQHMILAELPIDG-KPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             TTCSCCTTTTEEEEEETT-TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT-EEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCceeeeeEEEEEcc-CCceeEeeecCCcccccccCCCCcEEEeeccCC-cEEEEEEEECCCCeEEEEECCCCCE
Confidence                      39999999 67766655332221111  11222222333355 4   788899999999999999986

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.60  E-value=7.4e-06  Score=74.79  Aligned_cols=199  Identities=9%  Similarity=0.059  Sum_probs=118.1

Q ss_pred             EEEEEcCCCCEEEEeccc------ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecC-Cccccccc
Q 014005           36 SAIEFDKTGDYLAVGDRG------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFDYLK  108 (432)
Q Consensus        36 ~~~~fsp~g~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h-~~~~~~~~  108 (432)
                      ..+..+|+| +++++..+      |.|.+.|.++.+.+                           .++..- .++     
T Consensus       141 h~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~---------------------------~~~~~~~~~~-----  187 (462)
T 2ece_A          141 HTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPL---------------------------GKWEIDRGDQ-----  187 (462)
T ss_dssp             EEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEE---------------------------EECCSBCTTC-----
T ss_pred             cceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEE---------------------------EEEccCCCCc-----
Confidence            445677888 66665444      67899998876533                           333211 100     


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEe-------------------CCCeEEEEEccCcceeeeeecCCCCcccccccccc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILST-------------------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~-------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (432)
                           .--+.+.|  +|+++.++++.                   .+.+|.+||+.+++...........          
T Consensus       188 -----~~~Yd~~~--~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g----------  250 (462)
T 2ece_A          188 -----YLAYDFWW--NLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN----------  250 (462)
T ss_dssp             -----CCCCCEEE--ETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE----------
T ss_pred             -----cccceEEE--CCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC----------
Confidence                 22345778  88999888884                   4789999999987644433331110          


Q ss_pred             cccccc--ccCCCCCcceecceee----ccceEEEEeecccccceeeEEe--ec----C-----------CCCCeeEEEe
Q 014005          170 EKNFMN--EHNPPSFAHGYHLEWT----ENMATKIANVGNSVHARCQKVY--PH----A-----------HDFNINSISN  226 (432)
Q Consensus       170 ~~~i~~--~~~~~~~~~~~~~~~~----~~~~v~i~d~~~~~~~~~~~~~--~~----~-----------~~~~i~~~~~  226 (432)
                       .....  ++++|++++.+.+...    .+++|.+|..+.. .....+.+  ..    +           -......+.+
T Consensus       251 -~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l  328 (462)
T 2ece_A          251 -RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI  328 (462)
T ss_dssp             -EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred             -CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence             12233  4569999988877641    1567766655431 22222221  00    0           0245788999


Q ss_pred             CCCCCEEEEE--cCCeEEEEeCCCCC--ceeeEeecCCC-CcCCC------CcceEEEEEcCCCCcEEEEEe
Q 014005          227 NSDCETFVSA--DDLRINLWNLEISD--QCFNIVDMKPS-NMDDL------TEVITSAEFHPIYCNLLAYSS  287 (432)
Q Consensus       227 ~~~~~~l~~~--~d~~i~lwd~~~~~--~~~~~~~~~~~-~~~~~------~~~v~~~~~~p~~~~~l~~~~  287 (432)
                      ++||++|.++  ..+.|.+||+....  +.+..+...-. ....|      ......++++||| ++|+++.
T Consensus       329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG-k~LyVaN  399 (462)
T 2ece_A          329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG-RRVYVTN  399 (462)
T ss_dssp             CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS-SEEEEEC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC-CEEEEEc
Confidence            9999999988  68999999986232  22333311100 00000      1236789999999 7777776

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.58  E-value=4e-06  Score=75.64  Aligned_cols=217  Identities=10%  Similarity=0.011  Sum_probs=123.5

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecc-----cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDR-----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~  104 (432)
                      .+...+..++|+++|+++++-..     ++.|.+||+.+++..                           ..+...... 
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~---------------------------~~~~~~~~~-  115 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLS---------------------------RVIYLPPPI-  115 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEE---------------------------EEEECCTTT-
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEE---------------------------EEEECChhh-
Confidence            35568999999999987665433     478999999876532                           222211100 


Q ss_pred             cccchhhhhcceeEEEEEEcCCCCE-EEEEe---CCCeEEEEEccCcceeeeeec--CCCC--ccccccc-cc-------
Q 014005          105 DYLKSLEIEEKINRVRWCAAPNGSM-FILST---NDKTIKLWKVRDQKVKKIKEM--DHFP--FVSSENT-LL-------  168 (432)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~-l~s~~---~d~~i~iwd~~~~~~~~~~~~--~~~~--~~~~~~~-~~-------  168 (432)
                           ......+..+++  ++++.. +++..   .++.|.+||+.+++...+...  ...+  ....... ..       
T Consensus       116 -----~~~~~~~~~v~v--d~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g  188 (343)
T 2qe8_A          116 -----TLSNSFVNDLAV--DLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDG  188 (343)
T ss_dssp             -----SCTTCCCCEEEE--ETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTS
T ss_pred             -----cccccccceEEE--ecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCC
Confidence                 000045688999  665444 45544   678999999987765443211  0000  0000000 00       


Q ss_pred             ----cccccccccCCCCCcceecceeeccceEEEEeeccccc-----ce---eeEEeecCCCCCeeEEEeCCCCCEEEEE
Q 014005          169 ----AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH-----AR---CQKVYPHAHDFNINSISNNSDCETFVSA  236 (432)
Q Consensus       169 ----~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~-----~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~  236 (432)
                          ....+..+++++++..++..... ...+..++......     .+   .+..  .++......++++++|+++++.
T Consensus       189 ~~~~~~~~~~gia~s~dg~~ly~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~g~~g~pdgia~d~~G~l~va~  265 (343)
T 2qe8_A          189 TVIRPHLGVNGIVLDAENEWLYLSPMH-STSMYRIKSADLSNLQLTDAELGSKIER--YSEKPICDGISIDKDHNIYVGD  265 (343)
T ss_dssp             CEECCCCCEEEEEECTTSCEEEEEESS-CSEEEEEEHHHHTCTTCCHHHHHTTCEE--EEECCSCSCEEECTTCCEEEEE
T ss_pred             ceeceecccceeEeccCCCEEEEEeCC-CCeEEEEEHHHhcCCCCChhhhhcceEe--cccCCCCceEEECCCCCEEEEc
Confidence                01234678899998877766541 22333333210000     00   0111  1234466789999999888888


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeE
Q 014005          237 -DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  292 (432)
Q Consensus       237 -~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i  292 (432)
                       .++.|.+||.+ .+....+..      ..+...+.+++|.+++ +++++.+..+.+
T Consensus       266 ~~~~~V~~~d~~-~G~~~~~~~------~~~~~~p~~va~~~~g-~l~v~~~~~~~~  314 (343)
T 2qe8_A          266 LAHSAIGVITSA-DRAYKLLVT------DEKLSWTDSFNFGSDG-YLYFDCNQLHHS  314 (343)
T ss_dssp             GGGTEEEEEETT-TTEEEEEEE------CGGGSCEEEEEECTTS-CEEEEECCGGGS
T ss_pred             cCCCeEEEEECC-CCCEEEEEE------CCceecCCeeEECCCC-cEEEEeCccccc
Confidence             89999999994 244322220      1224568999999998 877777654443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.56  E-value=1.2e-05  Score=71.82  Aligned_cols=185  Identities=8%  Similarity=-0.036  Sum_probs=112.5

Q ss_pred             ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  194 (432)
                      .+.++..  .+++. +..++.++.|..+|.. ++........  .           ..+..+...+++...+..     +
T Consensus       138 ~~~~~~~--~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~--~-----------~~~~~~~~d~~g~l~v~t-----~  195 (330)
T 3hxj_A          138 IYATPIV--SEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN--D-----------AITSAASIGKDGTIYFGS-----D  195 (330)
T ss_dssp             CCSCCEE--CTTSC-EEEECTTSEEEEECTT-SCEEEEEECS--S-----------CCCSCCEECTTCCEEEES-----S
T ss_pred             eeeeeEE--cCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC--C-----------CceeeeEEcCCCEEEEEe-----C
Confidence            3455555  55665 6667778999999988 5533222221  1           334455555555544332     5


Q ss_pred             eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEE
Q 014005          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE  274 (432)
Q Consensus       195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  274 (432)
                      .+..+| .   +++....+ ......+.++...+++...+...++.+..+|..  +..+..+       ......+..+.
T Consensus       196 ~l~~~d-~---~g~~~~~~-~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~--g~~~~~~-------~~~~~~~~~~~  261 (330)
T 3hxj_A          196 KVYAIN-P---DGTEKWNF-YAGYWTVTRPAISEDGTIYVTSLDGHLYAINPD--GTEKWRF-------KTGKRIESSPV  261 (330)
T ss_dssp             SEEEEC-T---TSCEEEEE-CCSSCCCSCCEECTTSCEEEEETTTEEEEECTT--SCEEEEE-------ECSSCCCSCCE
T ss_pred             EEEEEC-C---CCcEEEEE-ccCCcceeceEECCCCeEEEEcCCCeEEEECCC--CCEeEEe-------eCCCCccccce
Confidence            667777 3   34444444 334466888889888866555578888888754  4444443       11122233455


Q ss_pred             EcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEe
Q 014005          275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFR  354 (432)
Q Consensus       275 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd  354 (432)
                      +.+++ . |..++.+|.+..+|. +++.    ...+...             ...+.++...++|++.+...+|.+++..
T Consensus       262 ~~~~g-~-l~v~t~~ggl~~~d~-~g~~----~~~~~~~-------------~~~~~~~~~d~~g~l~~gt~~G~~~~~~  321 (330)
T 3hxj_A          262 IGNTD-T-IYFGSYDGHLYAINP-DGTE----KWNFETG-------------SWIIATPVIDENGTIYFGTRNGKFYALF  321 (330)
T ss_dssp             ECTTS-C-EEEECTTCEEEEECT-TSCE----EEEEECS-------------SCCCSCCEECTTCCEEEECTTSCEEEEE
T ss_pred             EcCCC-e-EEEecCCCCEEEECC-CCcE----EEEEEcC-------------CccccceEEcCCCEEEEEcCCCeEEEEe
Confidence            66665 4 566888889999995 5554    2333321             3456778888899877766669888876


Q ss_pred             c
Q 014005          355 Y  355 (432)
Q Consensus       355 ~  355 (432)
                      .
T Consensus       322 ~  322 (330)
T 3hxj_A          322 N  322 (330)
T ss_dssp             C
T ss_pred             c
Confidence            6

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.55  E-value=1.5e-05  Score=78.62  Aligned_cols=148  Identities=9%  Similarity=0.068  Sum_probs=91.1

Q ss_pred             eEEEEeecccccceeeEEeecCCC--------CCeeEEEeCCCC---CEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005          195 ATKIANVGNSVHARCQKVYPHAHD--------FNINSISNNSDC---ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (432)
Q Consensus       195 ~v~i~d~~~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~---~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (432)
                      .|..+|..   +++.+..+...+.        .....+....+|   ..++.+ .+|.++++|.+ +++.+..+...+..
T Consensus       284 sv~AlD~~---TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~-tG~~l~~~~~~~~~  359 (677)
T 1kb0_A          284 SIVALDPD---TGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRT-NGKFISAKNFVPVN  359 (677)
T ss_dssp             EEEEECTT---TCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETT-TCCEEEEEESSCCS
T ss_pred             EEEEEECC---CCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECC-CCCEeccccccccC
Confidence            47777877   6666666532221        122223333466   567778 89999999999 67666554332211


Q ss_pred             c----CCCCcce------------------------EEEEEcCCCCcEEEEEeC--------------------------
Q 014005          263 M----DDLTEVI------------------------TSAEFHPIYCNLLAYSSS--------------------------  288 (432)
Q Consensus       263 ~----~~~~~~v------------------------~~~~~~p~~~~~l~~~~~--------------------------  288 (432)
                      .    ......+                        ..++++|+. .++++...                          
T Consensus       360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  438 (677)
T 1kb0_A          360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT  438 (677)
T ss_dssp             SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred             cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEeChhcceeeeccccccccccccccccccc
Confidence            0    0000001                        257899987 67766543                          


Q ss_pred             -----------------CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeE
Q 014005          289 -----------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL  350 (432)
Q Consensus       289 -----------------dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i  350 (432)
                                       .|.|..||+.+++..    -.+..              ..++....++.+|..++.++ ++.+
T Consensus       439 ~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~----W~~~~--------------~~~~~~g~~~~~g~~v~~g~~dg~l  500 (677)
T 1kb0_A          439 GWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA----WSVEH--------------VSPWNGGTLTTAGNVVFQGTADGRL  500 (677)
T ss_dssp             TCCCCEEECSSCCCSCCEEEEEEEETTTTEEE----EEEEE--------------SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred             ccccccccccccCCCCCccEEEEEeCCCCcEE----eecCC--------------CCCCcCcceEeCCCEEEEECCCCcE
Confidence                             278999999998862    33332              23444555677777777774 4999


Q ss_pred             EEEec---CcceeEeecc
Q 014005          351 KVFRY---EPVMTLSFCG  365 (432)
Q Consensus       351 ~iwd~---~~~~~~~~~~  365 (432)
                      ++||.   +.+.++....
T Consensus       501 ~a~D~~tG~~lw~~~~~~  518 (677)
T 1kb0_A          501 VAYHAATGEKLWEAPTGT  518 (677)
T ss_dssp             EEEETTTCCEEEEEECSS
T ss_pred             EEEECCCCceeeeeeCCC
Confidence            99999   7777777654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.54  E-value=2.4e-05  Score=66.08  Aligned_cols=185  Identities=9%  Similarity=0.071  Sum_probs=115.6

Q ss_pred             cEEEEEEcCCCCEEEEecccc--eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      -...+.|+ ++.++.+.+.+|  .|+.+|+++++..                           ..+...           
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~---------------------------~~~~l~-----------   84 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTL---------------------------QQIELG-----------   84 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEE---------------------------EEEECC-----------
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEE---------------------------EEEecC-----------
Confidence            45789998 677667766665  8999999998743                           222211           


Q ss_pred             hhccee--EEEEEEcCCCCEEEE-EeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          112 IEEKIN--RVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       112 ~~~~v~--~l~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                        ....  .+..    +++.+.. .-.++.+.++|..+.+.........                ....+++++..++..
T Consensus        85 --~~~FgeGit~----~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~----------------eG~glt~dg~~L~~S  142 (262)
T 3nol_A           85 --KRYFGEGISD----WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG----------------EGWGLTHNDQYLIMS  142 (262)
T ss_dssp             --TTCCEEEEEE----ETTEEEEEESSSSEEEEEETTTCCEEEEEECSS----------------CCCCEEECSSCEEEC
T ss_pred             --CccceeEEEE----eCCEEEEEEeeCCEEEEEECccCcEEEEEECCC----------------CceEEecCCCEEEEE
Confidence              2222  3444    3444444 4568999999999887554433321                223334566666555


Q ss_pred             eeeccceEEEEeecccccceeeEEeec---CCC-CCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC-
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPH---AHD-FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN-  262 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~---~~~-~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~-  262 (432)
                      ..  ++.+.++|..   +.+.+..+.-   +.. ..++.+.+. +|+..+.. .++.|.+.|.+ +++....++..... 
T Consensus       143 dG--s~~i~~iDp~---T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~-tG~V~~~Id~~~L~~  215 (262)
T 3nol_A          143 DG--TPVLRFLDPE---SLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPE-TGKVTGIIDLNGILA  215 (262)
T ss_dssp             CS--SSEEEEECTT---TCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTT-TCBEEEEEECTTGGG
T ss_pred             CC--CCeEEEEcCC---CCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECC-CCcEEEEEECCcCcc
Confidence            44  5678899987   4445544422   111 345667776 67666666 78899999999 78888888654221 


Q ss_pred             ----cCCCCcceEEEEEcCCCCcEEEEEe
Q 014005          263 ----MDDLTEVITSAEFHPIYCNLLAYSS  287 (432)
Q Consensus       263 ----~~~~~~~v~~~~~~p~~~~~l~~~~  287 (432)
                          ........+.|+|+|++ +.|+..+
T Consensus       216 ~~~~~~~~~~vlNGIA~dp~~-~~lfVTG  243 (262)
T 3nol_A          216 EAGPLPSPIDVLNGIAWDKEH-HRLFVTG  243 (262)
T ss_dssp             GSCSCCSSCCCEEEEEEETTT-TEEEEEE
T ss_pred             ccccccCcCCceEEEEEcCCC-CEEEEEC
Confidence                11223467999999998 4444444

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.53  E-value=1.5e-05  Score=67.43  Aligned_cols=197  Identities=10%  Similarity=0.104  Sum_probs=118.5

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCC--eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                      .-...+.|  + ++.++.+++.+|  .|+.+|+++++......+..              ........+.+..++.... 
T Consensus        43 ~ftqGL~~--~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~--------------~~FgeGit~~g~~ly~ltw-  104 (262)
T 3nol_A           43 AFTEGFFY--R-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK--------------RYFGEGISDWKDKIVGLTW-  104 (262)
T ss_dssp             CEEEEEEE--E-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT--------------TCCEEEEEEETTEEEEEES-
T ss_pred             cccceEEE--E-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC--------------ccceeEEEEeCCEEEEEEe-
Confidence            44578999  6 677777777766  89999999998655443321              1222111222334443332 


Q ss_pred             ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC-cc
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EV  269 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~-~~  269 (432)
                      .++.+.++|..   +.+.+..+.....+  ..++  +++..|+.+ .++.|.++|.+ +.+....+.+..   .+.. ..
T Consensus       105 ~~~~v~v~D~~---t~~~~~ti~~~~eG--~glt--~dg~~L~~SdGs~~i~~iDp~-T~~v~~~I~V~~---~g~~~~~  173 (262)
T 3nol_A          105 KNGLGFVWNIR---NLRQVRSFNYDGEG--WGLT--HNDQYLIMSDGTPVLRFLDPE-SLTPVRTITVTA---HGEELPE  173 (262)
T ss_dssp             SSSEEEEEETT---TCCEEEEEECSSCC--CCEE--ECSSCEEECCSSSEEEEECTT-TCSEEEEEECEE---TTEECCC
T ss_pred             eCCEEEEEECc---cCcEEEEEECCCCc--eEEe--cCCCEEEEECCCCeEEEEcCC-CCeEEEEEEecc---CCccccc
Confidence            16789999998   67777777332221  2333  567778777 68889999998 566666553211   1111 34


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE-Eee
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD  346 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~-s~~  346 (432)
                      ++.+.|. +| .+.+..-.++.|.+.|.++++.    +..+......+.... ........+.++|+|+++.|. +|.
T Consensus       174 lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V----~~~Id~~~L~~~~~~-~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          174 LNELEWV-DG-EIFANVWQTNKIVRIDPETGKV----TGIIDLNGILAEAGP-LPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEEEE-TT-EEEEEETTSSEEEEECTTTCBE----EEEEECTTGGGGSCS-CCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             cceeEEE-CC-EEEEEEccCCeEEEEECCCCcE----EEEEECCcCcccccc-ccCcCCceEEEEEcCCCCEEEEECC
Confidence            5667776 66 7776666788999999999986    444443100000000 000124668999999866555 454

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.49  E-value=3.7e-05  Score=68.54  Aligned_cols=252  Identities=9%  Similarity=0.004  Sum_probs=139.5

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc------cc-
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF------DY-  106 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~------~~-  106 (432)
                      ...+++++++|+++.++..++.|..|+..+++..                            .+.... .+      +- 
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~----------------------------~~~~~~-~~~~~~~~~g~   70 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV----------------------------DFAYAS-PYWNKAFCENS   70 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE----------------------------EEEESC-TTCCHHHHTTC
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE----------------------------EEeccc-ccccccccccc
Confidence            3457889999997888888899999987664321                            111000 00      00 


Q ss_pred             --cchhhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC-CC
Q 014005          107 --LKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SF  182 (432)
Q Consensus       107 --~~~~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~  182 (432)
                        ............+++  .+ ++ .|+.+...+.|..+|..++..+.+.......         .-.....++..+ ++
T Consensus        71 ~~~~~~~~~~~p~gi~~--~~~~g-~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~---------~~~~p~~i~~d~~~G  138 (322)
T 2fp8_A           71 TDAEKRPLCGRTYDISY--NLQNN-QLYIVDCYYHLSVVGSEGGHATQLATSVDGV---------PFKWLYAVTVDQRTG  138 (322)
T ss_dssp             CCGGGHHHHCCEEEEEE--ETTTT-EEEEEETTTEEEEECTTCEECEEEESEETTE---------ECSCEEEEEECTTTC
T ss_pred             cchhccccCCCCceEEE--cCCCC-cEEEEECCCCEEEEeCCCCEEEEecccCCCC---------cccccceEEEecCCC
Confidence              000011145788998  76 55 4555555556888887766543332111000         002345577777 76


Q ss_pred             cceeccee---------------eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEe
Q 014005          183 AHGYHLEW---------------TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWN  245 (432)
Q Consensus       183 ~~~~~~~~---------------~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd  245 (432)
                      ...++...               ...+.+..+|..   ..+.....  ......+.++++|+++.+..+  .++.|..|+
T Consensus       139 ~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~---~~~~~~~~--~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~  213 (322)
T 2fp8_A          139 IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS---TKETTLLL--KELHVPGGAEVSADSSFVLVAEFLSHQIVKYW  213 (322)
T ss_dssp             CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT---TTEEEEEE--EEESCCCEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             EEEEECCcccccccccceehcccCCCceEEEEeCC---CCEEEEec--cCCccCcceEECCCCCEEEEEeCCCCeEEEEE
Confidence            54443211               113567777765   22222211  112356689999999877666  578999999


Q ss_pred             CCCCC-ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeC----------CCeEEEEEccccccccccceeecccc
Q 014005          246 LEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQSALCDHSARILRDAA  314 (432)
Q Consensus       246 ~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~h~  314 (432)
                      +.... .....+       ....+ ...++++++| ++.++...          .+.|..+|.. ++.    +..+.. +
T Consensus       214 ~~~~~~~~~~~~-------~~~~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~----~~~~~~-~  278 (322)
T 2fp8_A          214 LEGPKKGTAEVL-------VKIPN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEF-GNI----LEVIPL-P  278 (322)
T ss_dssp             SSSTTTTCEEEE-------EECSS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTT-SCE----EEEEEC-C
T ss_pred             CCCCcCCccceE-------EeCCC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCC-CCE----EEEEEC-C
Confidence            87211 112222       11112 6789999999 76666544          4678888864 554    344443 1


Q ss_pred             cccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          315 ESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       315 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                      ....        ...++.+++ .+|++.++. ..+.|..+++
T Consensus       279 ~g~~--------~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~  311 (322)
T 2fp8_A          279 PPFA--------GEHFEQIQE-HDGLLYIGTLFHGSVGILVY  311 (322)
T ss_dssp             TTTT--------TSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred             CCCc--------cccceEEEE-eCCEEEEeecCCCceEEEec
Confidence            1000        134566666 456655554 3488888887

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.47  E-value=7.4e-05  Score=62.57  Aligned_cols=199  Identities=9%  Similarity=0.075  Sum_probs=118.1

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCC--CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          114 EKINRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                      .-...+.|  +. +.++.+++.+  ..|+.+|+.+++......+...              .........+..++.... 
T Consensus        21 ~ftqGL~~--~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~--------------~fgeGi~~~~~~ly~ltw-   82 (243)
T 3mbr_X           21 AFTEGLFY--LR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP--------------YFGAGIVAWRDRLIQLTW-   82 (243)
T ss_dssp             CCEEEEEE--ET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT--------------CCEEEEEEETTEEEEEES-
T ss_pred             cccccEEE--EC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC--------------cceeEEEEeCCEEEEEEe-
Confidence            56779999  54 5566666665  4899999999986554443321              111111222333333322 


Q ss_pred             ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                      .++.+.++|..   +.+.+.++..+.  .=..++  +++..|..+ .++.|.++|.+ +.+....+.+...  ...-..+
T Consensus        83 ~~~~v~v~D~~---tl~~~~ti~~~~--~Gwglt--~dg~~L~vSdgs~~l~~iDp~-t~~~~~~I~V~~~--g~~~~~l  152 (243)
T 3mbr_X           83 RNHEGFVYDLA---TLTPRARFRYPG--EGWALT--SDDSHLYMSDGTAVIRKLDPD-TLQQVGSIKVTAG--GRPLDNL  152 (243)
T ss_dssp             SSSEEEEEETT---TTEEEEEEECSS--CCCEEE--ECSSCEEEECSSSEEEEECTT-TCCEEEEEECEET--TEECCCE
T ss_pred             eCCEEEEEECC---cCcEEEEEeCCC--CceEEe--eCCCEEEEECCCCeEEEEeCC-CCeEEEEEEEccC--Ccccccc
Confidence            16789999998   777887773332  223444  567778878 88899999998 5666665533211  0011345


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC-EEEEee
Q 014005          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD  346 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~s~~  346 (432)
                      +.+.+. +| .+++..-.+..|.+.|.++++.    +..+......+...........-.+.++++|+++ ++++|-
T Consensus       153 NeLe~~-~G-~lyanvw~s~~I~vIDp~tG~V----~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          153 NELEWV-NG-ELLANVWLTSRIARIDPASGKV----VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEEE-TT-EEEEEETTTTEEEEECTTTCBE----EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             eeeEEe-CC-EEEEEECCCCeEEEEECCCCCE----EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            677766 56 6666665788999999999986    4554431111100000000124678999999765 455564

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.47  E-value=3.3e-06  Score=75.55  Aligned_cols=240  Identities=11%  Similarity=0.036  Sum_probs=128.6

Q ss_pred             chhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccc
Q 014005            4 NREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF   83 (432)
Q Consensus         4 ~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   83 (432)
                      +...+.....|++.-.-+            ...++.++.+|. |..++.++.|..|| .+++..                
T Consensus         3 ~~~~~~g~~~W~~~~~~~------------~~~~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~----------------   52 (330)
T 3hxj_A            3 RGGVNDCKIKWEFLIGNS------------IDSSPILAKNGT-IYLGSSNKNLYAIN-TDGSVK----------------   52 (330)
T ss_dssp             ---------CCTTTSCEE------------ECCCCEECTTSC-EECSSTTTTTEEEC-TTSCEE----------------
T ss_pred             ccccCCceEEEEEeCCCC------------cccCceEccCCe-EEEEcCCCEEEEEC-CCCcEE----------------
Confidence            344556677888763211            223455656665 56677788899999 665421                


Q ss_pred             cccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccc
Q 014005           84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS  163 (432)
Q Consensus        84 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  163 (432)
                                 ..+....            ..+.++..  .+++. +..++.+  |..+|. +++...  ......    
T Consensus        53 -----------~~~~~~~------------~~~~~~~~--~~~g~-l~v~t~~--l~~~d~-~g~~~~--~~~~~~----   97 (330)
T 3hxj_A           53 -----------WFFKSGE------------IIECRPSI--GKDGT-IYFGSDK--VYAINP-DGTEKW--RFDTKK----   97 (330)
T ss_dssp             -----------ESSCGGG------------EEEECCEE--TTTTE-ECCSSCE--EEEECC-CGGGGG--GSCC------
T ss_pred             -----------EEEecCC------------CcccceEE--ecCCc-EEEecCc--EEEECC-CCcEEE--EEECCC----
Confidence                       1111122            34456666  56664 5555544  888886 443211  111111    


Q ss_pred             ccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEE
Q 014005          164 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINL  243 (432)
Q Consensus       164 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~l  243 (432)
                             .........  ...+..++.  ++.+..+|..    ++....+ ......+.++...+++..++...++.+..
T Consensus        98 -------~~~~~~~~~--~~~l~v~t~--~~~l~~~d~~----g~~~~~~-~~~~~~~~~~~~~~~g~l~vgt~~~~l~~  161 (330)
T 3hxj_A           98 -------AIVSDFTIF--EDILYVTSM--DGHLYAINTD----GTEKWRF-KTKKAIYATPIVSEDGTIYVGSNDNYLYA  161 (330)
T ss_dssp             ----------CCEEEE--TTEEEEECT--TSEEEEECTT----SCEEEEE-ECSSCCCSCCEECTTSCEEEECTTSEEEE
T ss_pred             -------CcccCceEE--CCEEEEEec--CCEEEEEcCC----CCEEEEE-cCCCceeeeeEEcCCCEEEEEcCCCEEEE
Confidence                   111111111  333444444  6777777765    1223333 23444566777777886444338899999


Q ss_pred             EeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005          244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (432)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~  323 (432)
                      +|.+  +.....+       ......+.++...+++ .+.+ ++  +.+..+| .+++.    ...+...          
T Consensus       162 ~d~~--g~~~~~~-------~~~~~~~~~~~~d~~g-~l~v-~t--~~l~~~d-~~g~~----~~~~~~~----------  213 (330)
T 3hxj_A          162 INPD--GTEKWRF-------KTNDAITSAASIGKDG-TIYF-GS--DKVYAIN-PDGTE----KWNFYAG----------  213 (330)
T ss_dssp             ECTT--SCEEEEE-------ECSSCCCSCCEECTTC-CEEE-ES--SSEEEEC-TTSCE----EEEECCS----------
T ss_pred             ECCC--CCEeEEE-------ecCCCceeeeEEcCCC-EEEE-Ee--CEEEEEC-CCCcE----EEEEccC----------
Confidence            9988  4444433       2223446667777777 6544 44  7899999 66654    2333321          


Q ss_pred             eeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          324 TEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       324 ~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                         ...+.++...++|.+.+...++.+..+|.
T Consensus       214 ---~~~~~~~~~~~~g~l~v~t~~~gl~~~~~  242 (330)
T 3hxj_A          214 ---YWTVTRPAISEDGTIYVTSLDGHLYAINP  242 (330)
T ss_dssp             ---SCCCSCCEECTTSCEEEEETTTEEEEECT
T ss_pred             ---CcceeceEECCCCeEEEEcCCCeEEEECC
Confidence               34577888899987766655578888887

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.47  E-value=4.5e-05  Score=64.49  Aligned_cols=185  Identities=6%  Similarity=0.014  Sum_probs=117.2

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      ....+.|+. +.++.+.+.+|.|+++|+++++..                           ..+.  .            
T Consensus        56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~---------------------------~~~l--~------------   93 (268)
T 3nok_A           56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPV---------------------------WMER--L------------   93 (268)
T ss_dssp             CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCS---------------------------EEEE--C------------
T ss_pred             ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEE---------------------------eEEC--C------------
Confidence            457888873 566677788889999999998754                           2221  1            


Q ss_pred             cce--eEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          114 EKI--NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       114 ~~v--~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                      ...  ..+++  . .++.+...-.++.+.++|..+.+..........                .....+++..++.... 
T Consensus        94 ~~~FgeGit~--~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e----------------GwGLt~Dg~~L~vSdG-  153 (268)
T 3nok_A           94 GNIFAEGLAS--D-GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE----------------GWGLCYWNGKLVRSDG-  153 (268)
T ss_dssp             TTCCEEEEEE--C-SSCEEEEESSSCEEEEEETTTTEEEEEEECSSC----------------CCCEEEETTEEEEECS-
T ss_pred             CCcceeEEEE--e-CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCc----------------eeEEecCCCEEEEECC-
Confidence            222  23555  3 234445555789999999998875544333211                1233355666665554 


Q ss_pred             ccceEEEEeecccccceeeEEeec-CC---CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC----
Q 014005          192 ENMATKIANVGNSVHARCQKVYPH-AH---DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN----  262 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~-~~---~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~----  262 (432)
                       ++.+.++|..   +.+.++.+.- .+   -..++.+.|. +|+..+.. .++.|.+.|.+ +++.+..++.....    
T Consensus       154 -s~~l~~iDp~---T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~-TG~V~~~Idl~~L~~~~~  227 (268)
T 3nok_A          154 -GTMLTFHEPD---GFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA-TGTVVGVIDASALTRAVA  227 (268)
T ss_dssp             -SSEEEEECTT---TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT-TCBEEEEEECHHHHHHHT
T ss_pred             -CCEEEEEcCC---CCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC-CCcEEEEEECCCCccccc
Confidence             7789999987   4455554421 11   1245677776 77666656 78899999999 78888888654210    


Q ss_pred             --cCCCCcceEEEEEcCCCCcEEEEE
Q 014005          263 --MDDLTEVITSAEFHPIYCNLLAYS  286 (432)
Q Consensus       263 --~~~~~~~v~~~~~~p~~~~~l~~~  286 (432)
                        .....+..+.|+++|++.+++++|
T Consensus       228 ~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          228 GQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             ccccCcCCceEEEEEcCCCCEEEEeC
Confidence              112234679999999885666655

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.42  E-value=5.3e-05  Score=74.92  Aligned_cols=59  Identities=8%  Similarity=0.010  Sum_probs=40.7

Q ss_pred             CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec---CcceeEeec
Q 014005          289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMTLSFC  364 (432)
Q Consensus       289 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~~~  364 (432)
                      +|.|..||+.+|+.    +-.+..+              .++....++..|.+++.|+ |+.++.||.   +.+.+++..
T Consensus       454 ~g~l~A~D~~tG~~----~W~~~~~--------------~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          454 SGKLIAWDPVKQQA----AWEVPYV--------------TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             EEEEEEEETTTTEE----EEEEEES--------------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ceeEEEEECCCCCe----EeEccCC--------------CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence            37899999999886    3334332              2333345666677888875 499999999   777777765


Q ss_pred             c
Q 014005          365 G  365 (432)
Q Consensus       365 ~  365 (432)
                      .
T Consensus       516 ~  516 (689)
T 1yiq_A          516 S  516 (689)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.41  E-value=0.00025  Score=60.24  Aligned_cols=215  Identities=12%  Similarity=0.139  Sum_probs=123.2

Q ss_pred             cceeEEEEEEcCCCC-EEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      ..+..++|  .|++. ++++...++.|...|.. ++......+...            .....+++.+++.+.+....  
T Consensus        27 ~~lSGla~--~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~------------~D~EGIa~~~~g~~~vs~E~--   89 (255)
T 3qqz_A           27 NNISSLTW--SAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV------------KDLETIEYIGDNQFVISDER--   89 (255)
T ss_dssp             SCEEEEEE--ETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC------------SSEEEEEECSTTEEEEEETT--
T ss_pred             cCcceeEE--eCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC------------CChHHeEEeCCCEEEEEECC--
Confidence            67999999  66655 55557778899999988 554433322211            34566777777776665433  


Q ss_pred             cceEEEEeecccccceeeEEee-----cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCC--CCCceeeEeecCCCCcC
Q 014005          193 NMATKIANVGNSVHARCQKVYP-----HAHDFNINSISNNSDCETFVSA-DDLRINLWNLE--ISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~--~~~~~~~~~~~~~~~~~  264 (432)
                      ++.+.++++.............     .........++++|.++.|.++ ......+|.++  .....+.+.+.+...-.
T Consensus        90 ~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~  169 (255)
T 3qqz_A           90 DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQ  169 (255)
T ss_dssp             TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHT
T ss_pred             CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccc
Confidence            5677777776432211222221     1234456899999998777766 43333444443  11222333211000001


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      .+...+.+++++|...++++.....+.+.++|.. |+.    +..+.-. .   ....+.........++|.++|++.++
T Consensus       170 ~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~----~~~~~L~-~---g~~~l~~~~~qpEGia~d~~G~lyIv  240 (255)
T 3qqz_A          170 FTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEV----IGEMSLT-K---GSRGLSHNIKQAEGVAMDASGNIYIV  240 (255)
T ss_dssp             CCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCE----EEEEECS-T---TGGGCSSCCCSEEEEEECTTCCEEEE
T ss_pred             cccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCE----EEEEEcC-C---ccCCcccccCCCCeeEECCCCCEEEE
Confidence            1233578999999875777778888899999976 443    2332220 0   00000001246789999999987777


Q ss_pred             eeCCeEEEEe
Q 014005          345 RDYMNLKVFR  354 (432)
Q Consensus       345 ~~~~~i~iwd  354 (432)
                      +.-+.++.+.
T Consensus       241 sE~n~~y~f~  250 (255)
T 3qqz_A          241 SEPNRFYRFT  250 (255)
T ss_dssp             ETTTEEEEEE
T ss_pred             cCCceEEEEE
Confidence            5447666553

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.41  E-value=7.3e-05  Score=63.19  Aligned_cols=196  Identities=10%  Similarity=0.043  Sum_probs=120.0

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccccccccc--ccCCCCCcceecceee
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN--EHNPPSFAHGYHLEWT  191 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~  191 (432)
                      .....+.|  + ++.++.+.+.+|.|+++|+++++..... +..              ....  ++.  .+..++.... 
T Consensus        55 ~ftqGL~~--~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~--------------~~FgeGit~--~g~~Ly~ltw-  113 (268)
T 3nok_A           55 AFTQGLVF--H-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG--------------NIFAEGLAS--DGERLYQLTW-  113 (268)
T ss_dssp             CCEEEEEE--E-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT--------------TCCEEEEEE--CSSCEEEEES-
T ss_pred             cccceEEE--E-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC--------------CcceeEEEE--eCCEEEEEEc-
Confidence            44578888  4 4667777888899999999999855443 321              1221  333  3334433322 


Q ss_pred             ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                      .++.+.++|..   +.+.+..+....  .-..++  ++++.|+.+ .++.|.++|.+ +.+....+.+...  ...-..+
T Consensus       114 ~~~~v~V~D~~---Tl~~~~ti~~~~--eGwGLt--~Dg~~L~vSdGs~~l~~iDp~-T~~v~~~I~V~~~--g~~v~~l  183 (268)
T 3nok_A          114 TEGLLFTWSGM---PPQRERTTRYSG--EGWGLC--YWNGKLVRSDGGTMLTFHEPD-GFALVGAVQVKLR--GQPVELI  183 (268)
T ss_dssp             SSCEEEEEETT---TTEEEEEEECSS--CCCCEE--EETTEEEEECSSSEEEEECTT-TCCEEEEEECEET--TEECCCE
T ss_pred             cCCEEEEEECC---cCcEEEEEeCCC--ceeEEe--cCCCEEEEECCCCEEEEEcCC-CCeEEEEEEeCCC--Ccccccc
Confidence            17789999998   777777773322  223444  567888888 79999999998 5666665533111  1111245


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCC-CEEEEee
Q 014005          271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD  346 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~s~~  346 (432)
                      +.+.|. +| .+.+..-.++.|.+.|.++++.    +..+......+...........-.+.++++|++ +++++|-
T Consensus       184 NeLe~~-dG-~lyanvw~s~~I~vIDp~TG~V----~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          184 NELECA-NG-VIYANIWHSSDVLEIDPATGTV----VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEEEEE-TT-EEEEEETTCSEEEEECTTTCBE----EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             cccEEe-CC-EEEEEECCCCeEEEEeCCCCcE----EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            777877 66 7776666788999999999986    344443100000000000012467899999975 5666675

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.37  E-value=0.00022  Score=62.99  Aligned_cols=228  Identities=10%  Similarity=0.033  Sum_probs=126.6

Q ss_pred             CcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  112 (432)
                      .....++|+++|+++++-..++.|..||.++...                            ..+. -.           
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~----------------------------~~~~-~~-----------   71 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ----------------------------IHAT-VE-----------   71 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE----------------------------EEEE-CS-----------
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE----------------------------EEEe-CC-----------
Confidence            4678899999999777766788888888765321                            1111 12           


Q ss_pred             hcceeEEEEEEcCCCCEEEEEeCC-C-eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          113 EEKINRVRWCAAPNGSMFILSTND-K-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d-~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                       .....+++  .++++++++.... + .|..++..+++...+.......            ....++..+.+..++....
T Consensus        72 -~~p~gia~--~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~------------~~~g~~~~~~~~~~v~d~~  136 (306)
T 2p4o_A           72 -GKVSGLAF--TSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAI------------FLNGITPLSDTQYLTADSY  136 (306)
T ss_dssp             -SEEEEEEE--CTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCS------------CEEEEEESSSSEEEEEETT
T ss_pred             -CCceeEEE--cCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCcc------------ccCcccccCCCcEEEEECC
Confidence             45788999  8899866555332 2 4666777777755443321100            0111111223322222111


Q ss_pred             eccceEEEEeecccccceeeEEe-------ecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCce--eeEeecC
Q 014005          191 TENMATKIANVGNSVHARCQKVY-------PHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQC--FNIVDMK  259 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~--~~~~~~~  259 (432)
                        .+.+..+|.... ..+.....       ........+.+  +++++.+..+  ..+.|..++++..+..  ...+   
T Consensus       137 --~g~i~~~d~~~~-~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~---  208 (306)
T 2p4o_A          137 --RGAIWLIDVVQP-SGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF---  208 (306)
T ss_dssp             --TTEEEEEETTTT-EEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE---
T ss_pred             --CCeEEEEeCCCC-cEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE---
Confidence              566666665421 01111000       00111234555  7788777766  6789999998732221  1111   


Q ss_pred             CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc---
Q 014005          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA---  336 (432)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s---  336 (432)
                          . .......++++++| ++.++....+.|.++|.. ++...  +..+...             ....++++|.   
T Consensus       209 ----~-~~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~-G~~~~--~~~~~~~-------------~~~p~~~a~~g~~  266 (306)
T 2p4o_A          209 ----V-EQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPD-RSTTI--IAQAEQG-------------VIGSTAVAFGQTE  266 (306)
T ss_dssp             ----E-ESCCCSSEEEBTTC-CEEEECBTTCCEEEECTT-CCEEE--EECGGGT-------------CTTEEEEEECCST
T ss_pred             ----e-ccCCCCCeEECCCC-CEEEEeCCCCeEEEECCC-CCEEE--Eeecccc-------------cCCceEEEEeccc
Confidence                0 01235678999999 877776678899999975 54310  0111110             2467899998   


Q ss_pred             CCCCEEEEe
Q 014005          337 NDGQHLLSR  345 (432)
Q Consensus       337 ~dg~~l~s~  345 (432)
                      ||++.|...
T Consensus       267 ~d~~~LyVt  275 (306)
T 2p4o_A          267 GDCTAIYVV  275 (306)
T ss_dssp             TTTTEEEEE
T ss_pred             CCCCEEEEE
Confidence            887766554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.36  E-value=0.00031  Score=63.98  Aligned_cols=182  Identities=10%  Similarity=0.054  Sum_probs=96.7

Q ss_pred             CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecccc
Q 014005          126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV  205 (432)
Q Consensus       126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~  205 (432)
                      ++..++.++.++.|..+|..+++..-......              .+..... ..+..++.+..  ++.+..+|..   
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~--------------~~~~~p~-~~~~~v~v~~~--~g~l~~~d~~---  161 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG--------------EALSRPV-VSDGLVLIHTS--NGQLQALNEA---  161 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSS--------------CCCSCCE-EETTEEEEECT--TSEEEEEETT---
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC--------------ceEcCCE-EECCEEEEEcC--CCeEEEEECC---
Confidence            45678888889999999999887543322211              1110000 11234444444  7788888887   


Q ss_pred             cceeeEEeecCCCCCe-----eEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc---e-EEEEE
Q 014005          206 HARCQKVYPHAHDFNI-----NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV---I-TSAEF  275 (432)
Q Consensus       206 ~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~---v-~~~~~  275 (432)
                      +++.+..+ .......     ......  +..++.+ .++.+..+|.+ +++..................   + .....
T Consensus       162 tG~~~W~~-~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~  237 (376)
T 3q7m_A          162 DGAVKWTV-NLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLME-QGQMIWQQRISQATGSTEIDRLSDVDTTPVV  237 (376)
T ss_dssp             TCCEEEEE-ECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETT-TCCEEEEEECCC-----------CCCCCCEE
T ss_pred             CCcEEEEE-eCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECC-CCcEEEEEecccCCCCcccccccccCCCcEE
Confidence            55555554 1111110     111222  3467777 89999999998 565554442211000000000   0 01111


Q ss_pred             cCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEe
Q 014005          276 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFR  354 (432)
Q Consensus       276 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd  354 (432)
                        .+ ..+..++.++.+..+|.++++.    +.....               .....+...  +..|..+ .++.+..+|
T Consensus       238 --~~-~~v~~~~~~g~l~~~d~~tG~~----~w~~~~---------------~~~~~~~~~--~~~l~~~~~~g~l~~~d  293 (376)
T 3q7m_A          238 --VN-GVVFALAYNGNLTALDLRSGQI----MWKREL---------------GSVNDFIVD--GNRIYLVDQNDRVMALT  293 (376)
T ss_dssp             --ET-TEEEEECTTSCEEEEETTTCCE----EEEECC---------------CCEEEEEEE--TTEEEEEETTCCEEEEE
T ss_pred             --EC-CEEEEEecCcEEEEEECCCCcE----EeeccC---------------CCCCCceEE--CCEEEEEcCCCeEEEEE
Confidence              13 4667778899999999998875    222222               123334333  4445444 458999999


Q ss_pred             c
Q 014005          355 Y  355 (432)
Q Consensus       355 ~  355 (432)
                      .
T Consensus       294 ~  294 (376)
T 3q7m_A          294 I  294 (376)
T ss_dssp             T
T ss_pred             C
Confidence            8

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.33  E-value=7.1e-05  Score=73.87  Aligned_cols=191  Identities=8%  Similarity=-0.038  Sum_probs=110.0

Q ss_pred             eEEEEEEcCCCCEEEEEeCCC-------------------eEEEEEccCcceeeeeecCCCCcccccccccccccccccc
Q 014005          117 NRVRWCAAPNGSMFILSTNDK-------------------TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH  177 (432)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  177 (432)
                      ..+++  ++++.+++.+..++                   .|..+|..+++..-......+....    .........+.
T Consensus       246 ~~~~~--d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd----~~~~~~p~l~~  319 (677)
T 1kb0_A          246 DSMTF--DAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD----YTSTQPMILAD  319 (677)
T ss_dssp             SCEEE--ETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC----CCCCSCCEEEE
T ss_pred             cceeE--cCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc----cccCCCcEEEe
Confidence            35677  77888888876653                   5999999998855443332221000    00000000011


Q ss_pred             CCCCC---cceecceeeccceEEEEeecccccceeeEEeecCCC---------CC-------------------------
Q 014005          178 NPPSF---AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHD---------FN-------------------------  220 (432)
Q Consensus       178 ~~~~~---~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~---------~~-------------------------  220 (432)
                      ...++   ..++.+..  +|.+.++|..   +++.+..+.....         +.                         
T Consensus       320 ~~~dG~~~~~l~~~~~--~G~l~~lD~~---tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~  394 (677)
T 1kb0_A          320 IKIAGKPRKVILHAPK--NGFFFVLDRT---NGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN  394 (677)
T ss_dssp             EEETTEEEEEEEECCT--TSEEEEEETT---TCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC
T ss_pred             cccCCcEeeEEEEECC--CCEEEEEECC---CCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC
Confidence            11133   34555555  8899999987   5555544311110         00                         


Q ss_pred             eeEEEeCCCCCEEEEE-cC-------------------------------------------CeEEEEeCCCCCceeeEe
Q 014005          221 INSISNNSDCETFVSA-DD-------------------------------------------LRINLWNLEISDQCFNIV  256 (432)
Q Consensus       221 i~~~~~~~~~~~l~~~-~d-------------------------------------------~~i~lwd~~~~~~~~~~~  256 (432)
                      -..++++|++..+.+. .+                                           +.|..||+. +++.+..+
T Consensus       395 w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~-tG~~~W~~  473 (677)
T 1kb0_A          395 WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPV-AQKAAWSV  473 (677)
T ss_dssp             SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETT-TTEEEEEE
T ss_pred             CCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCC-CCcEEeec
Confidence            0256888888887765 32                                           678999998 56655544


Q ss_pred             ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc
Q 014005          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA  336 (432)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s  336 (432)
                      .        +...+....+...+ .+++.++.||.+++||.++|+.    +..+... .           .....-+.+.
T Consensus       474 ~--------~~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~~----lw~~~~~-~-----------~~~~~p~~y~  528 (677)
T 1kb0_A          474 E--------HVSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEK----LWEAPTG-T-----------GVVAAPSTYM  528 (677)
T ss_dssp             E--------ESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCE----EEEEECS-S-----------CCCSCCEEEE
T ss_pred             C--------CCCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCce----eeeeeCC-C-----------CcccCCEEEE
Confidence            1        12223344566666 7788899999999999999987    4555531 0           1223346677


Q ss_pred             CCCC-EEEE
Q 014005          337 NDGQ-HLLS  344 (432)
Q Consensus       337 ~dg~-~l~s  344 (432)
                      .+|+ |++.
T Consensus       529 ~~G~~~v~~  537 (677)
T 1kb0_A          529 VDGRQYVSV  537 (677)
T ss_dssp             ETTEEEEEE
T ss_pred             eCCEEEEEE
Confidence            8886 4444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.33  E-value=7.5e-05  Score=74.79  Aligned_cols=198  Identities=9%  Similarity=0.052  Sum_probs=111.6

Q ss_pred             cEEEEEEc-CCCCEEEEecc-----cceEEEEEecCC-cCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           34 IVSAIEFD-KTGDYLAVGDR-----GGRVILFETVGG-KNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        34 ~V~~~~fs-p~g~~l~t~~~-----dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      .+...+|| |||++||.+..     ..+|+++|++++ +.+.                          ..+   .     
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--------------------------~~~---~-----  220 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--------------------------DKV---S-----  220 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--------------------------CCE---E-----
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--------------------------ccc---c-----
Confidence            57889999 99999885432     235999999887 5220                          001   0     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCC-----CeEEEEEccCccee--eeeecCCCCccccccccccccccccccCC
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTND-----KTIKLWKVRDQKVK--KIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  179 (432)
                             .....+.|  +||++.|+....|     ..|.++++.+++..  .+..... .           .....+.|+
T Consensus       221 -------~~~~~~~W--spDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~-~-----------~~~~~~~~S  279 (751)
T 2xe4_A          221 -------GTNGEIVW--GPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHN-P-----------LFSAFMYKA  279 (751)
T ss_dssp             -------EECSCCEE--CSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCC-T-----------TCEEEEEEC
T ss_pred             -------CceeeEEE--ecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCC-C-----------ceEEEEEEC
Confidence                   22346789  8999888877665     36788888766422  2211110 1           234567899


Q ss_pred             CCCcceecceeec-cceEEEEeeccccccee-eEEeecCCCCCeeEEEeCCCCCEEEEE-cC--C--eEEEEeCCCCCce
Q 014005          180 PSFAHGYHLEWTE-NMATKIANVGNSVHARC-QKVYPHAHDFNINSISNNSDCETFVSA-DD--L--RINLWNLEISDQC  252 (432)
Q Consensus       180 ~~~~~~~~~~~~~-~~~v~i~d~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d--~--~i~lwd~~~~~~~  252 (432)
                      +++++++...... ...+.++|+... .... ++.+.........++.|+.++.+++.+ .+  +  .|..+|+...+..
T Consensus       280 pDg~~l~~~~~~~~~~~l~~~d~~~~-~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~  358 (751)
T 2xe4_A          280 ADTNTLCIGSQSPETAEVHLLDLRKG-NAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDW  358 (751)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEESSSC-TTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCC
T ss_pred             CCCCEEEEEecCCCCceEEEEECCCC-CCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccc
Confidence            9999887765422 457778887642 1122 122313344455566655444444555 43  3  5666666521111


Q ss_pred             ee-EeecCCCCcCCCCc--ceEEEEEcCCCCcEEEEEeCCCeEE--EEEc
Q 014005          253 FN-IVDMKPSNMDDLTE--VITSAEFHPIYCNLLAYSSSRGFVR--LVDM  297 (432)
Q Consensus       253 ~~-~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~i~--iwd~  297 (432)
                      .. .+        .+..  .+..+.+.  +..++++...++..+  ++|+
T Consensus       359 ~~~li--------~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          359 SHVLV--------DHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             CCEEE--------CCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred             eeeEE--------CCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence            11 22        2222  34555554  436777777888644  5554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.32  E-value=0.00027  Score=59.21  Aligned_cols=188  Identities=9%  Similarity=0.014  Sum_probs=115.5

Q ss_pred             CCcEEEEEEcCCCCEEEEeccc--ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRG--GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      ......+.|++ +.++.+.+.+  ..|+.+|+++++..                           ....-.         
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~---------------------------~~~~l~---------   62 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRIL---------------------------QRAEVP---------   62 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEE---------------------------EEEECC---------
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEE---------------------------EEEeCC---------
Confidence            34577899987 5666666664  48999999998743                           222211         


Q ss_pred             hhhhcce--eEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          110 LEIEEKI--NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       110 ~~~~~~v--~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                          ...  ..++.  . +++.+...-.++.+.++|..+.+..........                ...+.+++..++.
T Consensus        63 ----~~~fgeGi~~--~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~----------------Gwglt~dg~~L~v  119 (243)
T 3mbr_X           63 ----PPYFGAGIVA--W-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGE----------------GWALTSDDSHLYM  119 (243)
T ss_dssp             ----TTCCEEEEEE--E-TTEEEEEESSSSEEEEEETTTTEEEEEEECSSC----------------CCEEEECSSCEEE
T ss_pred             ----CCcceeEEEE--e-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC----------------ceEEeeCCCEEEE
Confidence                222  23444  2 234444556789999999998875544433221                1223345555555


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecC-C---CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHA-H---DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~-~---~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (432)
                      +..  ++.+.++|..   +.+.++.+.-+ +   -..++.+.+. +|+.++.. .+..|.+.|.+ +++.+..+++....
T Consensus       120 Sdg--s~~l~~iDp~---t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~-tG~V~~~idl~~l~  192 (243)
T 3mbr_X          120 SDG--TAVIRKLDPD---TLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPA-SGKVVAWIDLQALV  192 (243)
T ss_dssp             ECS--SSEEEEECTT---TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTT-TCBEEEEEECGGGS
T ss_pred             ECC--CCeEEEEeCC---CCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECC-CCCEEEEEECCcCc
Confidence            543  6789999988   44555544221 1   1345666665 67666666 78899999999 78888888754321


Q ss_pred             c------CCCCcceEEEEEcCCCCcEEEEE
Q 014005          263 M------DDLTEVITSAEFHPIYCNLLAYS  286 (432)
Q Consensus       263 ~------~~~~~~v~~~~~~p~~~~~l~~~  286 (432)
                      -      .......+.|+++|++.+++++|
T Consensus       193 ~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          193 PDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             cccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            1      11234679999999884555554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.23  E-value=0.0016  Score=55.31  Aligned_cols=211  Identities=8%  Similarity=0.059  Sum_probs=126.4

Q ss_pred             CcEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeee--ecCCccccccch
Q 014005           33 DIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF--QSHEPEFDYLKS  109 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~h~~~~~~~~~  109 (432)
                      +.+..++|+|+++.| ++...++.|...|.. ++..                           ..+  .+.         
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~---------------------------~~i~l~g~---------   69 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLI---------------------------RTIPLDFV---------   69 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEE---------------------------EEEECSSC---------
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEE---------------------------EEEecCCC---------
Confidence            579999999987655 456677788887876 4322                           222  221         


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcce-eeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                          .....|++  .+++.++++.-.++.+.++++..... .........     +.....+.....+++++.+..+...
T Consensus        70 ----~D~EGIa~--~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~-----~~~~~~N~g~EGLA~d~~~~~L~va  138 (255)
T 3qqz_A           70 ----KDLETIEY--IGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIP-----LQESPTNCGFEGLAYSRQDHTFWFF  138 (255)
T ss_dssp             ----SSEEEEEE--CSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECC-----CSSCCCSSCCEEEEEETTTTEEEEE
T ss_pred             ----CChHHeEE--eCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccc-----cccccccCCcceEEEeCCCCEEEEE
Confidence                34667888  77887767666778899998865431 111111100     0011235678899999998777776


Q ss_pred             eeeccceEEEEeecccccceeeEEee------cCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCCCCCceeeEeecCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYP------HAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKP  260 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~-~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~  260 (432)
                      ..  .....+|.+........+....      ......+.+++++|.. ++++.+ .+..+..+|.+  ++....+.+.+
T Consensus       139 ~E--~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~  214 (255)
T 3qqz_A          139 KE--KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTK  214 (255)
T ss_dssp             EE--SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECST
T ss_pred             EC--cCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCC
Confidence            55  3334455543211111222220      1234467899999964 455556 78899999988  55666664443


Q ss_pred             CC--cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005          261 SN--MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (432)
Q Consensus       261 ~~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~  297 (432)
                      ..  +...-...-.|+|+++| ++.++ ++.+.++.+.-
T Consensus       215 g~~~l~~~~~qpEGia~d~~G-~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          215 GSRGLSHNIKQAEGVAMDASG-NIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             TGGGCSSCCCSEEEEEECTTC-CEEEE-ETTTEEEEEEC
T ss_pred             ccCCcccccCCCCeeEECCCC-CEEEE-cCCceEEEEEe
Confidence            21  11122357899999999 75554 66677666653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.21  E-value=0.00035  Score=62.11  Aligned_cols=215  Identities=7%  Similarity=-0.018  Sum_probs=119.2

Q ss_pred             ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCc--ccc----ccccccccccccccCCC-CCcceec
Q 014005          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF--VSS----ENTLLAEKNFMNEHNPP-SFAHGYH  187 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~i~~~~~~~-~~~~~~~  187 (432)
                      ...+++|  +++++++.++..++.|..|+..++....+........  .|.    ............+++.+ ++...+ 
T Consensus        20 ~p~~i~~--d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v-   96 (322)
T 2fp8_A           20 APNSFTF--DSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI-   96 (322)
T ss_dssp             CCCCEEC--CTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-
T ss_pred             CceEEEE--cCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE-
Confidence            3457888  8888878888888999999987765443321110000  000    00000012355677776 444333 


Q ss_pred             ceeeccceEEEEeecccccceeeEEee---c-CCCCCeeEEEeCC-CCCEEEEE-c-----------------CCeEEEE
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYP---H-AHDFNINSISNNS-DCETFVSA-D-----------------DLRINLW  244 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~---~-~~~~~i~~~~~~~-~~~~l~~~-~-----------------d~~i~lw  244 (432)
                      +..  .+.+..+|...   +. ++.+.   . ......+.+++.+ +|+..++- .                 ++.|..+
T Consensus        97 ~d~--~~~i~~~d~~~---g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  170 (322)
T 2fp8_A           97 VDC--YYHLSVVGSEG---GH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY  170 (322)
T ss_dssp             EET--TTEEEEECTTC---EE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred             EEC--CCCEEEEeCCC---CE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence            322  33466666542   21 11220   1 1123578899999 89776664 3                 2668888


Q ss_pred             eCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEE-eCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005          245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (432)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~  323 (432)
                      |.. ++......        ......+.++++|++ +.|..+ ..++.|..|++...... . ...+...          
T Consensus       171 d~~-~~~~~~~~--------~~~~~p~gia~~~dg-~~lyv~d~~~~~I~~~~~~~~~~~-~-~~~~~~~----------  228 (322)
T 2fp8_A          171 DPS-TKETTLLL--------KELHVPGGAEVSADS-SFVLVAEFLSHQIVKYWLEGPKKG-T-AEVLVKI----------  228 (322)
T ss_dssp             ETT-TTEEEEEE--------EEESCCCEEEECTTS-SEEEEEEGGGTEEEEEESSSTTTT-C-EEEEEEC----------
T ss_pred             eCC-CCEEEEec--------cCCccCcceEECCCC-CEEEEEeCCCCeEEEEECCCCcCC-c-cceEEeC----------
Confidence            876 33322111        111235679999998 755544 56689999998753210 0 1222110          


Q ss_pred             eeeecceeEEEEcCCCCEEEEe-e----------CCeEEEEec--CcceeEeec
Q 014005          324 TEIIASISDIKFANDGQHLLSR-D----------YMNLKVFRY--EPVMTLSFC  364 (432)
Q Consensus       324 ~~~~~~v~~~~~s~dg~~l~s~-~----------~~~i~iwd~--~~~~~~~~~  364 (432)
                         .+ ...++++++|++.++. .          .+.|..+|.  +.+..+...
T Consensus       229 ---~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~  278 (322)
T 2fp8_A          229 ---PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLP  278 (322)
T ss_dssp             ---SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECC
T ss_pred             ---CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECC
Confidence               13 6778999999877664 3          256778887  445555443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.19  E-value=0.0012  Score=60.44  Aligned_cols=196  Identities=9%  Similarity=-0.008  Sum_probs=112.8

Q ss_pred             cceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          114 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      .....++|  ++.+..|+.+ ...+.|..+++.++....+.....             .....+++++.+..++.... .
T Consensus       116 ~~~~gl~~--d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~-------------~~p~glavd~~~g~lY~~d~-~  179 (386)
T 3v65_B          116 ENAIALDF--HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL-------------ESPGGLAVDWVHDKLYWTDS-G  179 (386)
T ss_dssp             SCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC-------------SCCCCEEEETTTTEEEEEET-T
T ss_pred             CccEEEEE--ecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC-------------CCccEEEEEeCCCeEEEEcC-C
Confidence            45788999  6555555444 567889999988765444322111             23355666654444333221 1


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cC-CeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                      .+.|.+.++...    ....+..........++++|.+..|..+  .+ +.|..++++ ........       ...-..
T Consensus       180 ~~~I~~~~~dg~----~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~-------~~~~~~  247 (386)
T 3v65_B          180 TSRIEVANLDGA----HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIA-------DTHLFW  247 (386)
T ss_dssp             TTEEEECBTTSC----SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEE-------CSSCSC
T ss_pred             CCeEEEEeCCCC----ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC-CCCcEEEE-------ECCCCC
Confidence            456777766522    2222213444678899999977766655  44 788888887 22222222       222345


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCC
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYM  348 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~  348 (432)
                      .+.++++|++.++.++-+..+.|..+|+.....    ...+...             .....++++. .+.+..+. ..+
T Consensus       248 PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~----~~~~~~~-------------~~~P~giav~-~~~ly~td~~~~  309 (386)
T 3v65_B          248 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR----KAVISQG-------------LPHPFAITVF-EDSLYWTDWHTK  309 (386)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC----EEEECSS-------------CSSEEEEEEE-TTEEEEEETTTT
T ss_pred             eeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee----EEEEECC-------------CCCceEEEEE-CCEEEEeeCCCC
Confidence            789999987734444445667899999874332    1222221             2345677874 34444443 338


Q ss_pred             eEEEEec
Q 014005          349 NLKVFRY  355 (432)
Q Consensus       349 ~i~iwd~  355 (432)
                      .|..+|.
T Consensus       310 ~V~~~~~  316 (386)
T 3v65_B          310 SINSANK  316 (386)
T ss_dssp             EEEEEET
T ss_pred             eEEEEEC
Confidence            8888884

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.19  E-value=0.00022  Score=65.02  Aligned_cols=150  Identities=8%  Similarity=0.062  Sum_probs=82.2

Q ss_pred             CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC--CCcceecceeeccceEEEEeeccc
Q 014005          127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--SFAHGYHLEWTENMATKIANVGNS  204 (432)
Q Consensus       127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~v~i~d~~~~  204 (432)
                      +..++.++.++.+..+|..+++.............      ..-..+..+...|  .+..++.+..  ++.+..+|..  
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~------~~~~~~~~~~~~p~~~~~~v~~~~~--~g~l~~~d~~--  257 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS------TEIDRLSDVDTTPVVVNGVVFALAY--NGNLTALDLR--  257 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------------CCCCCCEEETTEEEEECT--TSCEEEEETT--
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC------cccccccccCCCcEEECCEEEEEec--CcEEEEEECC--
Confidence            34677788899999999988875433322111000      0000000111111  1233444443  7788888887  


Q ss_pred             ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEE
Q 014005          205 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL  283 (432)
Q Consensus       205 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  283 (432)
                       +++.+... .  ......+..  ++..+..+ .++.+..+|.+ +++.....+.      .....+......  + ..|
T Consensus       258 -tG~~~w~~-~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~-tG~~~w~~~~------~~~~~~~~~~~~--~-~~l  321 (376)
T 3q7m_A          258 -SGQIMWKR-E--LGSVNDFIV--DGNRIYLVDQNDRVMALTID-GGVTLWTQSD------LLHRLLTSPVLY--N-GNL  321 (376)
T ss_dssp             -TCCEEEEE-C--CCCEEEEEE--ETTEEEEEETTCCEEEEETT-TCCEEEEECT------TTTSCCCCCEEE--T-TEE
T ss_pred             -CCcEEeec-c--CCCCCCceE--ECCEEEEEcCCCeEEEEECC-CCcEEEeecc------cCCCcccCCEEE--C-CEE
Confidence             55555444 1  223344444  34566666 88999999998 5555443310      111112222222  3 567


Q ss_pred             EEEeCCCeEEEEEcccccc
Q 014005          284 AYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       284 ~~~~~dg~i~iwd~~~~~~  302 (432)
                      +.++.+|.+.++|.++++.
T Consensus       322 ~v~~~~g~l~~~d~~tG~~  340 (376)
T 3q7m_A          322 VVGDSEGYLHWINVEDGRF  340 (376)
T ss_dssp             EEECTTSEEEEEETTTCCE
T ss_pred             EEEeCCCeEEEEECCCCcE
Confidence            7888999999999999886

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.18  E-value=0.0022  Score=59.55  Aligned_cols=252  Identities=10%  Similarity=-0.013  Sum_probs=133.2

Q ss_pred             cEEEEEEcCC--CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           34 IVSAIEFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        34 ~V~~~~fsp~--g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      .-..++|+|+  +..|..+...+.|+.++..++..                            ..+....          
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v----------------------------~~~~~~~----------  181 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV----------------------------DIKTTNI----------  181 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEE----------------------------EEECCCC----------
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEE----------------------------EEeecCC----------
Confidence            4568899985  33454444447899999866542                            1222222          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCC----e-EEEEEccCcce--eeeeecCCCCccccccccccccccccccCCC-CCc
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDK----T-IKLWKVRDQKV--KKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFA  183 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~----~-i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  183 (432)
                        .....+++  +++++ |+.+...+    . +...+...+..  ..+..+               .....+++++ ++.
T Consensus       182 --~~P~giav--d~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~---------------~~P~giavd~~~G~  241 (433)
T 4hw6_A          182 --GQCADVNF--TLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNA---------------RGAKTCAVHPQNGK  241 (433)
T ss_dssp             --SCEEEEEE--CTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEEC---------------SSBCCCEECTTTCC
T ss_pred             --CCccEEEE--CCCCC-EEEEcCCCCcccceEEEEECCCCeecccccccc---------------CCCCEEEEeCCCCe
Confidence              56789999  89998 44443321    2 33333322211  111111               3345677788 444


Q ss_pred             ceecceeeccceEEEEeeccccccee-eEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCcee---eEee
Q 014005          184 HGYHLEWTENMATKIANVGNSVHARC-QKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCF---NIVD  257 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~---~~~~  257 (432)
                      ..++...  ++.|..++..   .+.. ...+..+.......++++|+++.|..+  ..+.|+.++.+.....+   ..+-
T Consensus       242 lyv~d~~--~~~V~~~d~~---~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~a  316 (433)
T 4hw6_A          242 IYYTRYH--HAMISSYDPA---TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVC  316 (433)
T ss_dssp             EEECBTT--CSEEEEECTT---TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEE
T ss_pred             EEEEECC--CCEEEEEECC---CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEE
Confidence            4434333  5677777776   2322 122212223334579999999966655  67899998876221111   1110


Q ss_pred             cCCC--Cc------CCCCcceEEEEE---------cCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccc--ccC
Q 014005          258 MKPS--NM------DDLTEVITSAEF---------HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE--SHG  318 (432)
Q Consensus       258 ~~~~--~~------~~~~~~v~~~~~---------~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~--~~~  318 (432)
                      -...  ..      ...-.....+++         .+++ .+.++-...+.|+.++. +|..     ..+.+...  ...
T Consensus       317 g~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~-~G~v-----~t~~G~g~~~~~G  389 (433)
T 4hw6_A          317 GQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTP-EGRV-----TTYAGRGNSREWG  389 (433)
T ss_dssp             ECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECT-TSEE-----EEEECCCTTCSSC
T ss_pred             ecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECC-CCCE-----EEEEeCCCCCccc
Confidence            0000  00      011234678999         6776 77766667789999985 4543     44433111  000


Q ss_pred             C-cc--ceeeeecceeEEEEc-CCCCEEEEeeC-CeEEEEec
Q 014005          319 S-KS--FFTEIIASISDIKFA-NDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       319 ~-~~--~~~~~~~~v~~~~~s-~dg~~l~s~~~-~~i~iwd~  355 (432)
                      . ..  ...........++++ ++|.++++-.. ++|+.+++
T Consensus       390 ~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          390 YVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             CBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             cCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            0 00  000012457789999 66766655333 78887765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.18  E-value=8.6e-05  Score=70.28  Aligned_cols=198  Identities=9%  Similarity=0.025  Sum_probs=115.7

Q ss_pred             CCCEEEEEeC-CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccC-C-CCCcceeccee------------
Q 014005          126 NGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN-P-PSFAHGYHLEW------------  190 (432)
Q Consensus       126 ~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~~~~~~~------------  190 (432)
                      ||++++.+.. ++.|.+.|+.+.++..+..+...            .....+++ + |++.+++.+..            
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g------------~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l  167 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA------------KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM  167 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC------------CSEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC------------CCCcceeeeecCCCcEEEEecccccccCCCCccc
Confidence            6777777654 56799999999886665444321            22444454 3 66666655531            


Q ss_pred             ----eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC---------------eEEEEeCCCC-
Q 014005          191 ----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL---------------RINLWNLEIS-  249 (432)
Q Consensus       191 ----~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~---------------~i~lwd~~~~-  249 (432)
                          ..++.+.+.|..   +.+....+.-+  +....++++|+|+++.+. .+.               .+.+.|.... 
T Consensus       168 ~~~~~~~~~vtvID~~---t~~v~~qI~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~  242 (595)
T 1fwx_A          168 EDVANYVNVFTAVDAD---KWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  242 (595)
T ss_dssp             TCGGGEEEEEEEEETT---TTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             ccccccCceEEEEECC---CCeEEEEEEeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence                115688899988   55666655222  245678899999998876 332               2444443200 


Q ss_pred             -----C-----ceeeEeecCCC--Cc----CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccc------c--c
Q 014005          250 -----D-----QCFNIVDMKPS--NM----DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC------D--H  305 (432)
Q Consensus       250 -----~-----~~~~~~~~~~~--~~----~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~------~--~  305 (432)
                           +     ..+.+++....  ..    -.-.....++.++|||..+++++..+.+|.++|+.+.+..      .  .
T Consensus       243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~  322 (595)
T 1fwx_A          243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA  322 (595)
T ss_dssp             HHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGG
T ss_pred             EeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccc
Confidence                 0     01222322210  00    0111235678999999334444557889999999965310      0  0


Q ss_pred             cceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe--eCCeEEEEec
Q 014005          306 SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--DYMNLKVFRY  355 (432)
Q Consensus       306 ~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~--~~~~i~iwd~  355 (432)
                      ......-              ......++|+||| ++.+.  -++.|..||+
T Consensus       323 v~~~v~v--------------G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          323 VVAEPEL--------------GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             EEECCBC--------------CSCEEEEEECTTS-EEEEEETTTTEEEEEEH
T ss_pred             eEEEcCC--------------CCCcceEEECCCC-eEEEEEecCCcEEEEEh
Confidence            0111111              3567889999999 66554  3499999999

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.18  E-value=0.0014  Score=60.78  Aligned_cols=252  Identities=8%  Similarity=0.044  Sum_probs=132.2

Q ss_pred             cEEEEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005           34 IVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (432)
Q Consensus        34 ~V~~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  112 (432)
                      ....|+++| ++..|..+...+.|+.+|++++..                            ..+....           
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v----------------------------~~~~~~~-----------  178 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV----------------------------STVYSGL-----------  178 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE----------------------------EEEECCC-----------
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE----------------------------EEEecCC-----------
Confidence            456789998 455565555557888888876542                            1222222           


Q ss_pred             hcceeEEEEEEcCCCCEEEEEeCC----C-eEEEEEccCccee---eeeecCCCCccccccccccccccccccCCC-CCc
Q 014005          113 EEKINRVRWCAAPNGSMFILSTND----K-TIKLWKVRDQKVK---KIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFA  183 (432)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d----~-~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  183 (432)
                       .....++|  ++++++|+.+...    . .+...+. .+...   .+..+               .....++++| ++.
T Consensus       179 -~~P~~ia~--d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~---------------~~p~giavdp~~g~  239 (430)
T 3tc9_A          179 -SKVRTICW--THEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKG---------------QNCNGAETHPINGE  239 (430)
T ss_dssp             -SCEEEEEE--CTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEEC---------------SSCCCEEECTTTCC
T ss_pred             -CCcceEEE--eCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccC---------------CCceEEEEeCCCCE
Confidence             56788999  8999966666542    2 2333343 33322   11111               3345677888 444


Q ss_pred             ceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCcee---eEeec
Q 014005          184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCF---NIVDM  258 (432)
Q Consensus       184 ~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~---~~~~~  258 (432)
                      ..++-..  .+.|..++...   ...............+.++++|++++|..+  ..+.|..++.+.....+   ..+.-
T Consensus       240 lyv~d~~--~~~V~~~~~~~---~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag  314 (430)
T 3tc9_A          240 LYFNSWN--AGQVFRYDFTT---QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCG  314 (430)
T ss_dssp             EEEEETT--TTEEEEEETTT---TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEE
T ss_pred             EEEEECC--CCEEEEEECCC---CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEec
Confidence            3333333  56788888763   222122212233467899999999965555  68899998876221111   11100


Q ss_pred             CCC--Cc------CCCCcceE-EEEEc--------CCCCcEEEEEeCCCeEEEEEccccccccccceeeccccc-ccCC-
Q 014005          259 KPS--NM------DDLTEVIT-SAEFH--------PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE-SHGS-  319 (432)
Q Consensus       259 ~~~--~~------~~~~~~v~-~~~~~--------p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~-~~~~-  319 (432)
                      ...  ..      ...-.... .++..        +++ .+.++=...+.|+.++. +|..     ..+.+... .... 
T Consensus       315 ~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~-~G~v-----~~~~g~g~~~~~G~  387 (430)
T 3tc9_A          315 QQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTP-QGRV-----TTFAGRGSNGTSGY  387 (430)
T ss_dssp             CTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECT-TSEE-----EEEEECCTTSSSSC
T ss_pred             cCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECC-CCcE-----EEEEeCCCCCCCcc
Confidence            000  00      00111233 45553        345 55555556678888883 4543     33332100 0000 


Q ss_pred             -cc--ceeeeecceeEEEEcCC-CCEEEEeeC-CeEEEEec
Q 014005          320 -KS--FFTEIIASISDIKFAND-GQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       320 -~~--~~~~~~~~v~~~~~s~d-g~~l~s~~~-~~i~iwd~  355 (432)
                       ..  ...........++++|+ |.++++-.. ++|+.+++
T Consensus       388 ~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          388 NDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             BCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             cCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence             00  00001235789999995 555555333 78887764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.18  E-value=0.0015  Score=58.81  Aligned_cols=196  Identities=9%  Similarity=0.003  Sum_probs=112.7

Q ss_pred             cceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          114 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      .....++|  ++.+..|+.+ ...+.|..+++.++....+.....             .....+++++.+..++.... .
T Consensus        73 ~~~~~l~~--d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~-------------~~p~glavd~~~g~ly~~d~-~  136 (349)
T 3v64_C           73 ENAIALDF--HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL-------------ESPGGLAVDWVHDKLYWTDS-G  136 (349)
T ss_dssp             SCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-------------SCCCEEEEETTTTEEEEEET-T
T ss_pred             CceEEEEE--eccccEEEEEeccCCceEEEecCCCCceEEEeCCC-------------CCccEEEEecCCCeEEEEcC-C
Confidence            45788999  6555555544 567889999988765444322111             23355666654444433221 1


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cC-CeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                      .+.|.+.+++..    ....+..........++++|.+..+..+  .+ +.|...+++  +.....+      ....-..
T Consensus       137 ~~~I~~~~~dG~----~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~------~~~~~~~  204 (349)
T 3v64_C          137 TSRIEVANLDGA----HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRII------ADTHLFW  204 (349)
T ss_dssp             TTEEEEEETTSC----SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEES------CCSSCSC
T ss_pred             CCeEEEEcCCCC----ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCCcEEE------EECCCCC
Confidence            457777777632    1222213444678899999976666655  44 788888887  3222222      1222345


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCC
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYM  348 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~  348 (432)
                      .+.++++|++..+..+-...+.|..+|+.....    ...+...             .....++++. ++....+- ..+
T Consensus       205 PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~----~~~~~~~-------------~~~P~giav~-~~~ly~td~~~~  266 (349)
T 3v64_C          205 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR----KAVISQG-------------LPHPFAITVF-EDSLYWTDWHTK  266 (349)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSS-------------CSSEEEEEEE-TTEEEEEETTTT
T ss_pred             cceEEEeCCCCEEEEEECCCCEEEEEeCCCCce----EEEEeCC-------------CCCceEEEEE-CCEEEEecCCCC
Confidence            789999987734444445667899999874332    1222221             2345677774 34344443 338


Q ss_pred             eEEEEec
Q 014005          349 NLKVFRY  355 (432)
Q Consensus       349 ~i~iwd~  355 (432)
                      .|...|.
T Consensus       267 ~V~~~~~  273 (349)
T 3v64_C          267 SINSANK  273 (349)
T ss_dssp             EEEEEET
T ss_pred             eEEEEEc
Confidence            8888873

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.10  E-value=0.0024  Score=62.93  Aligned_cols=159  Identities=12%  Similarity=0.047  Sum_probs=91.3

Q ss_pred             CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC--CCcceecceee----ccceEEEEe
Q 014005          127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--SFAHGYHLEWT----ENMATKIAN  200 (432)
Q Consensus       127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~----~~~~v~i~d  200 (432)
                      +..++.++.|+.|..+|..+++..-........            ....+...|  ....++.+...    .++.+..+|
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~------------~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D  184 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPA------------KPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYD  184 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTT------------SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCC------------CcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEE
Confidence            457888888999999999998854332221110            000111111  12223332221    157888888


Q ss_pred             ecccccceeeEEeecC--C----------------------------CCCeeEEEeCCCCCEEEEE-cCC----------
Q 014005          201 VGNSVHARCQKVYPHA--H----------------------------DFNINSISNNSDCETFVSA-DDL----------  239 (432)
Q Consensus       201 ~~~~~~~~~~~~~~~~--~----------------------------~~~i~~~~~~~~~~~l~~~-~d~----------  239 (432)
                      ..   +++.+..+...  .                            ......++++|+...+..+ .++          
T Consensus       185 ~~---tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~  261 (668)
T 1kv9_A          185 AD---TGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSP  261 (668)
T ss_dssp             TT---TCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHST
T ss_pred             CC---CCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCC
Confidence            87   56666555211  0                            0111246788887788877 665          


Q ss_pred             ---------eEEEEeCCCCCceeeEeecCCCCcCC--CCcceEEEEEcCCCCc---EEEEEeCCCeEEEEEcccccc
Q 014005          240 ---------RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYCN---LLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       240 ---------~i~lwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~---~l~~~~~dg~i~iwd~~~~~~  302 (432)
                               .|..+|.+ +++....++..+.....  ...+.....+..++ +   .++.++.+|.++++|.++|++
T Consensus       262 ~~gd~l~~~~v~AlD~~-tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G-~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          262 GGGDNLYLSSILAIRPD-TGKLAWHYQVTPGDSWDFTATQQITLAELNIDG-KPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             TCCCCTTTTEEEEECTT-TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT-EEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCceeeeeEEEEcCC-CCceeeEeecCCCccccccCCCCcEEEEeccCC-cEEEEEEEECCCCEEEEEECCCCCE
Confidence                     48999998 67766655332211111  11223333333455 4   688899999999999999986

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.07  E-value=0.01  Score=59.64  Aligned_cols=243  Identities=12%  Similarity=0.106  Sum_probs=142.1

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ...|.++...++|.+ ..|+.++-|..|+..++...                      .+  ...-....          
T Consensus       362 ~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~----------------------~~--~~~~~~~~----------  406 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAI----------------------YN--KENRELLS----------  406 (781)
T ss_dssp             SSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEE----------------------CC-------CCC----------
T ss_pred             CcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEE----------------------Ec--cCCCCCCC----------
Confidence            356999999888874 45565566888886553211                      00  00000112          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                        ..|.++..  .+++.+. .|+.++-+..++..+++.........           ....|.++...+++...+ ++. 
T Consensus       407 --~~v~~i~~--d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~-----------~~~~v~~i~~d~~g~lwi-gt~-  468 (781)
T 3v9f_A          407 --NSVLCSLK--DSEGNLW-FGTYLGNISYYNTRLKKFQIIELEKN-----------ELLDVRVFYEDKNKKIWI-GTH-  468 (781)
T ss_dssp             --SBEEEEEE--CTTSCEE-EEETTEEEEEECSSSCEEEECCSTTT-----------CCCCEEEEEECTTSEEEE-EET-
T ss_pred             --cceEEEEE--CCCCCEE-EEeccCCEEEEcCCCCcEEEeccCCC-----------CCCeEEEEEECCCCCEEE-EEC-
Confidence              56888887  6677554 46666678888887776544321111           124566776666665333 332 


Q ss_pred             ccceEEEEeecccccceeeEEeecCC-----CCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAH-----DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                        +.+..++...   .+..... ...     ...|.++...++|++.+...++.+..+|.+ .+ .+..+.. ..  .-.
T Consensus       469 --~Gl~~~~~~~---~~~~~~~-~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~-~~-~~~~~~~-~~--~l~  537 (781)
T 3v9f_A          469 --AGVFVIDLAS---KKVIHHY-DTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPD-MQ-LVRKFNQ-YE--GFC  537 (781)
T ss_dssp             --TEEEEEESSS---SSCCEEE-CTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTT-CC-EEEEECT-TT--TCS
T ss_pred             --CceEEEeCCC---CeEEecc-cCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCC-CC-eEEEccC-CC--CCC
Confidence              3566777652   2222221 111     357899999999976665554557778887 33 3333311 11  112


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~  346 (432)
                      ...|.++..+++| .+.+ |+.+|.+..||..+++.     ..+... ...        ....|.++...++|++.+++.
T Consensus       538 ~~~i~~i~~d~~g-~lWi-~T~~Glv~~~d~~~~~~-----~~~~~~-~gl--------~~~~i~~i~~d~~g~lW~~t~  601 (781)
T 3v9f_A          538 SNTINQIYRSSKG-QMWL-ATGEGLVCFPSARNFDY-----QVFQRK-EGL--------PNTHIRAISEDKNGNIWASTN  601 (781)
T ss_dssp             CSCEEEEEECTTS-CEEE-EETTEEEEESCTTTCCC-----EEECGG-GTC--------SCCCCCEEEECSSSCEEEECS
T ss_pred             CCeeEEEEECCCC-CEEE-EECCCceEEECCCCCcE-----EEcccc-CCC--------CCceEEEEEECCCCCEEEEcC
Confidence            4578999999988 6555 44566658899876553     344321 000        024678899999998877765


Q ss_pred             CCeEEEEec
Q 014005          347 YMNLKVFRY  355 (432)
Q Consensus       347 ~~~i~iwd~  355 (432)
                      .| |..+|.
T Consensus       602 ~G-l~~~~~  609 (781)
T 3v9f_A          602 TG-ISCYIT  609 (781)
T ss_dssp             SC-EEEEET
T ss_pred             Cc-eEEEEC
Confidence            45 667777

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.05  E-value=0.015  Score=58.74  Aligned_cols=251  Identities=11%  Similarity=0.073  Sum_probs=146.6

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc-hh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK-SL  110 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~-~~  110 (432)
                      ...|.++..+++|.+ ..|+.++-|..|+..+++..                            .+.... . + .. .+
T Consensus       356 ~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~----------------------------~~~~~~-~-~-~~~~l  403 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFT----------------------------SYTLQE-D-E-SARGI  403 (795)
T ss_dssp             CSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEE----------------------------EECCC---------CC
T ss_pred             CCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEE----------------------------EEecCC-C-C-cccCC
Confidence            456999999998874 45677777888887665321                            111000 0 0 00 00


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                      . ...|.++..  .++++.|..|+.++-|..+|..+++........  +       ......|.++...+++...+ ++.
T Consensus       404 ~-~~~v~~i~~--d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~--~-------~l~~~~v~~i~~d~~g~lwi-gt~  470 (795)
T 4a2l_A          404 G-SNNIKAVYV--DEKKSLVYIGTHAGGLSILHRNSGQVENFNQRN--S-------QLVNENVYAILPDGEGNLWL-GTL  470 (795)
T ss_dssp             S-CSCEEEEEE--ETTTTEEEEEETTTEEEEEETTTCCEEEECTTT--S-------CCSCSCEEEEEECSSSCEEE-EES
T ss_pred             C-CccEEEEEE--cCCCCEEEEEeCcCceeEEeCCCCcEEEeecCC--C-------CcCCCeeEEEEECCCCCEEE-Eec
Confidence            0 156888887  778874667777777999999887755443211  0       01124567777666665333 332


Q ss_pred             eccceEEEEeecccccceeeEEeec-----CCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          191 TENMATKIANVGNSVHARCQKVYPH-----AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                         +.+..++..   +.+.......     -....|.++...++|+..+... +.+..||.+ ++..  .+.........
T Consensus       471 ---~Gl~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~-~~~~--~~~~~~~~~~l  540 (795)
T 4a2l_A          471 ---SALVRFNPE---QRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQE-GLDI--QKASILPVSNV  540 (795)
T ss_dssp             ---SCEEEEETT---TTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEE-TTEE--EECCCSCSCGG
T ss_pred             ---CceeEEeCC---CCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCC-CCeE--EEecCCCCCCC
Confidence               346677765   3332221100     1235789999999887655446 668889887 3433  22110011112


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                      ....|.++..+++| ++.+ |+.. .+..||..+++.     ..+... ...        ....|.++...++|++.+++
T Consensus       541 ~~~~i~~i~~d~~g-~lWi-gT~~-Gl~~~d~~~~~~-----~~~~~~-~gl--------~~~~i~~i~~d~~g~lWi~t  603 (795)
T 4a2l_A          541 TKLFTNCIYEASNG-IIWV-GTRE-GFYCFNEKDKQI-----KRYNTT-NGL--------PNNVVYGILEDSFGRLWLST  603 (795)
T ss_dssp             GGSCEEEEEECTTS-CEEE-EESS-CEEEEETTTTEE-----EEECGG-GTC--------SCSCEEEEEECTTSCEEEEE
T ss_pred             CCCeeEEEEECCCC-CEEE-EeCC-CceeECCCCCcE-----EEeCCC-CCC--------chhheEEEEECCCCCEEEEc
Confidence            34579999999998 6555 4444 578899876542     333220 000        02468889999999877766


Q ss_pred             eCCeEEEEec
Q 014005          346 DYMNLKVFRY  355 (432)
Q Consensus       346 ~~~~i~iwd~  355 (432)
                      . +-|..||.
T Consensus       604 ~-~Gl~~~~~  612 (795)
T 4a2l_A          604 N-RGISCFNP  612 (795)
T ss_dssp             T-TEEEEEET
T ss_pred             C-CceEEEcC
Confidence            4 56777887

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.04  E-value=0.0041  Score=55.91  Aligned_cols=202  Identities=8%  Similarity=0.018  Sum_probs=117.3

Q ss_pred             CcEEEEEEcCCCCEEE-EecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           33 DIVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ..+..++|++.+..|. +-...+.|..+++++....                           ..+....          
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~---------------------------~~~~~~~----------  115 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE---------------------------EVVSTGL----------  115 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------------------------EEECSSC----------
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCce---------------------------EEEeCCC----------
Confidence            4567888987655554 4445677888887664321                           1111111          


Q ss_pred             hhcceeEEEEEEcCCCC-EEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          112 IEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                        .....+++  .+.+. ++++-...+.|.+.++.......+.....             .....++++|.+..++....
T Consensus       116 --~~p~glav--d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l-------------~~P~~iavdp~~g~ly~td~  178 (349)
T 3v64_C          116 --ESPGGLAV--DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL-------------EKPRAIALHPMEGTIYWTDW  178 (349)
T ss_dssp             --SCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTC-------------SCEEEEEEETTTTEEEEEEC
T ss_pred             --CCccEEEE--ecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCC-------------CCcceEEEecCcCeEEEecc
Confidence              34567888  65444 44555567889999987654333322111             23466777876665554443


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      ...+.|...+++.    .....+........+.++++|++..|..+  ..+.|..+|++ .......+       .....
T Consensus       179 ~~~~~I~r~~~dG----~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d-G~~~~~~~-------~~~~~  246 (349)
T 3v64_C          179 GNTPRIEASSMDG----SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD-GSHRKAVI-------SQGLP  246 (349)
T ss_dssp             SSSCEEEEEETTS----CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCS
T ss_pred             CCCCEEEEEeCCC----CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC-CCceEEEE-------eCCCC
Confidence            2125666666652    22222212334567899999877777766  57889999988 32222222       22234


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      ....+++. .+ .++.+-...+.|..+|..+|+.
T Consensus       247 ~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          247 HPFAITVF-ED-SLYWTDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             SEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCS
T ss_pred             CceEEEEE-CC-EEEEecCCCCeEEEEEccCCCc
Confidence            56777773 34 5666666777888888666654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.01  E-value=0.0019  Score=59.00  Aligned_cols=203  Identities=8%  Similarity=0.012  Sum_probs=117.6

Q ss_pred             CCcEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           32 VDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      ......++|++.+..| ++-...+.|..++.++....                           ..+....         
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~---------------------------~~~~~~~---------  158 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE---------------------------EVVSTGL---------  158 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE---------------------------EEECSSC---------
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE---------------------------EEEeCCC---------
Confidence            4457788998765544 44445678888887664311                           1111111         


Q ss_pred             hhhcceeEEEEEEcCCCCE-EEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          111 EIEEKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                         .....+++  .+.+.. +++-...+.|.+.++.......+.....             .....++++|.+..++...
T Consensus       159 ---~~p~glav--d~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l-------------~~P~giavdp~~g~ly~td  220 (386)
T 3v65_B          159 ---ESPGGLAV--DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL-------------EKPRAIALHPMEGTIYWTD  220 (386)
T ss_dssp             ---SCCCCEEE--ETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSC-------------SCEEEEEEETTTTEEEEEE
T ss_pred             ---CCccEEEE--EeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCC-------------CCCcEEEEEcCCCeEEEec
Confidence               33456777  554444 4444556788888887554333322111             2346677777666555544


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      ....+.|...++..    .....+........+.++++|++..|..+  ..+.|..+|++ .......+       ....
T Consensus       221 ~~~~~~I~r~~~dG----~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~~-------~~~~  288 (386)
T 3v65_B          221 WGNTPRIEASSMDG----SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD-GSHRKAVI-------SQGL  288 (386)
T ss_dssp             CSSSCEEEEEETTS----CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT-SCSCEEEE-------CSSC
T ss_pred             cCCCCEEEEEeCCC----CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC-CCeeEEEE-------ECCC
Confidence            32125666666652    22222213334567899999877777766  57889999987 32222222       2223


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      .....+++. .+ .++.+-...+.|..+|..+|+.
T Consensus       289 ~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          289 PHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             SSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCS
T ss_pred             CCceEEEEE-CC-EEEEeeCCCCeEEEEECCCCcc
Confidence            456778883 34 6666666778898888666664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.98  E-value=0.0034  Score=55.26  Aligned_cols=202  Identities=10%  Similarity=0.051  Sum_probs=112.5

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      .....++|  +++++++++-..++.|..||..+.. .......              .....+++.+++..++.... .+
T Consensus        32 ~~pegia~--~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~~~~--------------~~p~gia~~~dG~l~vad~~-~~   93 (306)
T 2p4o_A           32 TFLENLAS--APDGTIFVTNHEVGEIVSITPDGNQ-QIHATVE--------------GKVSGLAFTSNGDLVATGWN-AD   93 (306)
T ss_dssp             CCEEEEEE--CTTSCEEEEETTTTEEEEECTTCCE-EEEEECS--------------SEEEEEEECTTSCEEEEEEC-TT
T ss_pred             CCcceEEE--CCCCCEEEEeCCCCeEEEECCCCce-EEEEeCC--------------CCceeEEEcCCCcEEEEecc-CC
Confidence            45678999  8899877776678999999987543 2222211              34667888888875444322 11


Q ss_pred             c-eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCc-eeeEeec--CCCCcCCCCc
Q 014005          194 M-ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDM--KPSNMDDLTE  268 (432)
Q Consensus       194 ~-~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~-~~~~~~~--~~~~~~~~~~  268 (432)
                      + .+..++..   +++...............++..+++..+++- .++.|..+|.. .+. .+.....  .+......-.
T Consensus        94 ~~~v~~~d~~---~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~-~~~~~v~~~~~~~~~~~~~~~~~  169 (306)
T 2p4o_A           94 SIPVVSLVKS---DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV-QPSGSIWLEHPMLARSNSESVFP  169 (306)
T ss_dssp             SCEEEEEECT---TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT-TTEEEEEEECGGGSCSSTTCCSC
T ss_pred             cceEEEEcCC---CCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCC-CCcEeEEEECCccccccccCCCC
Confidence            2 34445544   3333222211222334555655655445555 58888888876 221 1111100  0000011112


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccc-cccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-  346 (432)
                      ..+.+  +|++..++++-...+.|..+|+.. ++...  ...+..              ......++++++|++.++.. 
T Consensus       170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~--~~~~~~--------------~~~P~gi~vd~dG~l~va~~~  231 (306)
T 2p4o_A          170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE--PEIFVE--------------QTNIDDFAFDVEGNLYGATHI  231 (306)
T ss_dssp             SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC--CEEEEE--------------SCCCSSEEEBTTCCEEEECBT
T ss_pred             cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc--cEEEec--------------cCCCCCeEECCCCCEEEEeCC
Confidence            34555  788733445555678999999874 33210  122211              13467799999998777754 


Q ss_pred             CCeEEEEec
Q 014005          347 YMNLKVFRY  355 (432)
Q Consensus       347 ~~~i~iwd~  355 (432)
                      .+.|.++|.
T Consensus       232 ~~~V~~~~~  240 (306)
T 2p4o_A          232 YNSVVRIAP  240 (306)
T ss_dssp             TCCEEEECT
T ss_pred             CCeEEEECC
Confidence            389999987

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.96  E-value=0.01  Score=59.87  Aligned_cols=257  Identities=11%  Similarity=0.069  Sum_probs=145.6

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ...|.++..+++|. |..|+.++-|..++..+....                            .+.... .   ...+.
T Consensus       309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~----------------------------~~~~~~-~---~~~l~  355 (795)
T 4a2l_A          309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK----------------------------NIRNIP-Y---KNSLS  355 (795)
T ss_dssp             SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE----------------------------EECCCT-T---SSSCS
T ss_pred             CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce----------------------------EEcCCC-C---CCCCC
Confidence            35799999999887 445667677888886654311                            111000 0   00000


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                       ...|.++..  .++|. |-.|+.++-|..|+..++...........+     ........|.++...+++..+..|+. 
T Consensus       356 -~~~V~~i~~--d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~v~~i~~d~~g~~lWigt~-  425 (795)
T 4a2l_A          356 -DNVVSCIVE--DKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDES-----ARGIGSNNIKAVYVDEKKSLVYIGTH-  425 (795)
T ss_dssp             -CSSEEEEEE--CTTSC-EEEEESSSCEEEECTTTCCEEEECCC-----------CCSCSCEEEEEEETTTTEEEEEET-
T ss_pred             -CCeeEEEEE--CCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCc-----ccCCCCccEEEEEEcCCCCEEEEEeC-
Confidence             156888888  77775 445677767999998877654432111000     00011245677777667663555554 


Q ss_pred             ccceEEEEeecccccceeeEEeec----CCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          192 ENMATKIANVGNSVHARCQKVYPH----AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                       ++.+..+|..   +++..... .    .....|.++...++|++.+... +.+..||.+ ++. ...+........-..
T Consensus       426 -~~Gl~~~d~~---~~~~~~~~-~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~-~~~-~~~~~~~~~~~~~~~  497 (795)
T 4a2l_A          426 -AGGLSILHRN---SGQVENFN-QRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPE-QRS-FTTIEKEKDGTPVVS  497 (795)
T ss_dssp             -TTEEEEEETT---TCCEEEEC-TTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETT-TTE-EEECCBCTTCCBCCC
T ss_pred             -cCceeEEeCC---CCcEEEee-cCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCC-CCe-EEEccccccccccCC
Confidence             5678888876   33322221 1    1345789999988887555446 568889987 343 332211000001123


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~  347 (432)
                      ..|.++..++++ ++.+. +. +.+..||..+++.      .+........      .....|.++..+++|++.++.. 
T Consensus       498 ~~i~~i~~d~~g-~lWig-t~-~Gl~~~~~~~~~~------~~~~~~~~~~------l~~~~i~~i~~d~~g~lWigT~-  561 (795)
T 4a2l_A          498 KQITTLFRDSHK-RLWIG-GE-EGLSVFKQEGLDI------QKASILPVSN------VTKLFTNCIYEASNGIIWVGTR-  561 (795)
T ss_dssp             CCEEEEEECTTC-CEEEE-ES-SCEEEEEEETTEE------EECCCSCSCG------GGGSCEEEEEECTTSCEEEEES-
T ss_pred             ceEEEEEECCCC-CEEEE-eC-CceEEEeCCCCeE------EEecCCCCCC------CCCCeeEEEEECCCCCEEEEeC-
Confidence            578999999998 66554 44 4588899876542      1110000000      0135788999999998666544 


Q ss_pred             CeEEEEec
Q 014005          348 MNLKVFRY  355 (432)
Q Consensus       348 ~~i~iwd~  355 (432)
                      +-+..||.
T Consensus       562 ~Gl~~~d~  569 (795)
T 4a2l_A          562 EGFYCFNE  569 (795)
T ss_dssp             SCEEEEET
T ss_pred             CCceeECC
Confidence            35777776

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.94  E-value=0.012  Score=54.00  Aligned_cols=210  Identities=8%  Similarity=-0.034  Sum_probs=119.2

Q ss_pred             CCCcEEEEEEcCCCCEEEEe-cccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           31 DVDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      ....+..++|++.+..|..+ ...+.|+.+++++....                       ......+....        
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~-----------------------~~~~~~~~~~~--------  158 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------------------SSYDTVISRDI--------  158 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------------CCCEEEECSSC--------
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC-----------------------CcceEEEeCCC--------
Confidence            34567889999865555443 45677888887652200                       00001111122        


Q ss_pred             hhhhcceeEEEEEEcC-CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          110 LEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                          .....+++  .+ .+.++++-...+.|.+.++.+.....+.....             .....++.+|...+++..
T Consensus       159 ----~~p~glav--D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~-------------~~P~~iavdp~~g~ly~t  219 (400)
T 3p5b_L          159 ----QAPDGLAV--DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG-------------SKPRAIVVDPVHGFMYWT  219 (400)
T ss_dssp             ----SCEEEEEE--ETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSS-------------CCEEEEEEETTTTEEEEE
T ss_pred             ----CCcccEEE--EecCCceEEEECCCCeEEEEeCCCCceEEEEeCCC-------------CCcceEEEecccCeEEEE
Confidence                45677888  65 44444555667889999988665444332211             235677787766655554


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      .....+.|...++..    .....+....-...+.|++++++..|..+  ..+.|..+|++ .......+.     ....
T Consensus       220 d~~~~~~I~~~~~dG----~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~~~-----~~~~  289 (400)
T 3p5b_L          220 DWGTPAKIKKGGLNG----VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILE-----DEKR  289 (400)
T ss_dssp             ECSSSCCEEEEETTS----CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCCCEEEEE-----CSST
T ss_pred             eCCCCCEEEEEeCCC----CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC-CCccEEEEe-----CCCC
Confidence            432235666666652    22222213344678899999988777777  57889999988 332222220     0112


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      -....++++.. + .++.+-...+.|..+|..+|+.
T Consensus       290 l~~P~gl~v~~-~-~lywtd~~~~~V~~~~~~~G~~  323 (400)
T 3p5b_L          290 LAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSD  323 (400)
T ss_dssp             TSSEEEEEEET-T-EEEEEESSSCSEEEEESSSCCC
T ss_pred             CCCCEEEEEeC-C-EEEEecCCCCeEEEEEcCCCCc
Confidence            23455777743 3 5666666778898888777764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.83  E-value=0.0099  Score=57.41  Aligned_cols=156  Identities=9%  Similarity=-0.072  Sum_probs=85.9

Q ss_pred             EEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC---CCcceecceee----ccceEEEEeec
Q 014005          130 FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP---SFAHGYHLEWT----ENMATKIANVG  202 (432)
Q Consensus       130 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~----~~~~v~i~d~~  202 (432)
                      ++.++.|+.|..+|..+++..-........            .-..+...|   ++. ++.+...    .++.|.-+|..
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~------------~~~~~~ssP~v~~g~-V~vg~~g~e~g~~g~v~A~D~~  190 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIK------------VGSTLTIAPYVVKDK-VIIGSSGAELGVRGYLTAYDVK  190 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGG------------GTCBCCSCCEEETTE-EEECCBCGGGTCCCEEEEEETT
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCC------------ccceeecCCEEECCE-EEEEecccccCCCCeEEEEECC
Confidence            788888999999999998854332221100            000111111   222 2222210    15788888887


Q ss_pred             ccccceeeEEeecCCCC------------------------------------Ce-eEEEeCCCCCEEEEE-cC------
Q 014005          203 NSVHARCQKVYPHAHDF------------------------------------NI-NSISNNSDCETFVSA-DD------  238 (432)
Q Consensus       203 ~~~~~~~~~~~~~~~~~------------------------------------~i-~~~~~~~~~~~l~~~-~d------  238 (432)
                         +++.+..+......                                    .+ ..+++.++...+..+ .+      
T Consensus       191 ---TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~  267 (599)
T 1w6s_A          191 ---TGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE  267 (599)
T ss_dssp             ---TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred             ---CCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence               56665554211110                                    00 134556666677776 44      


Q ss_pred             ----------CeEEEEeCCCCCceeeEeecCCCCc---CCCCcceEEEEEc-CCCC--cEEEEEeCCCeEEEEEcccccc
Q 014005          239 ----------LRINLWNLEISDQCFNIVDMKPSNM---DDLTEVITSAEFH-PIYC--NLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       239 ----------~~i~lwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~-p~~~--~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                                +.|..+|.+ +++....++..+...   .....++. +... .+|.  ..++.++.+|.+.++|.++|++
T Consensus       268 ~~r~gd~~y~~sv~Ald~~-TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  345 (599)
T 1w6s_A          268 TMRPGDNKWTMTIFGRDAD-TGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL  345 (599)
T ss_dssp             GGSCSCCTTSSEEEEEETT-TCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             cccCCCccccceEEEEeCC-CCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence                      378999999 677666654332211   11112222 2222 4552  3677788999999999999886


Q ss_pred             c
Q 014005          303 C  303 (432)
Q Consensus       303 ~  303 (432)
                      .
T Consensus       346 l  346 (599)
T 1w6s_A          346 V  346 (599)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.83  E-value=0.014  Score=51.45  Aligned_cols=209  Identities=8%  Similarity=-0.074  Sum_probs=119.3

Q ss_pred             CCcEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           32 VDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      ......++|++.++.| ++-...+.|..+++++....                       ......+...-         
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~-----------------------~~~~~~~~~~~---------   76 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------------------SSYDTVISRDI---------   76 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------------CEEEECSSC---------
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC-----------------------cccEEEEeCCC---------
Confidence            4467899999876555 44455678988888762100                       00001111111         


Q ss_pred             hhhcceeEEEEEEcCCCCEE-EEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          111 EIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                         .....+++  .+.+..| ++-...+.|.+.++.......+.....             .....++.+|.+..++...
T Consensus        77 ---~~p~glav--d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~-------------~~P~~iavdp~~g~ly~~d  138 (316)
T 1ijq_A           77 ---QAPDGLAV--DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG-------------SKPRAIVVDPVHGFMYWTD  138 (316)
T ss_dssp             ---SCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT-------------CCEEEEEEETTTTEEEEEE
T ss_pred             ---CCcCEEEE--eecCCeEEEEECCCCEEEEEeCCCCceEEEEECCC-------------CCcceEEeCCCCCEEEEEc
Confidence               34567888  6544444 454667899999987655443332111             2346777787666555443


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      ....+.|...++..    ...+.+....-...+.+++++++..|..+  ..+.|..+|++ .. ..+.+-    ......
T Consensus       139 ~~~~~~I~~~~~dG----~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d-g~-~~~~~~----~~~~~~  208 (316)
T 1ijq_A          139 WGTPAKIKKGGLNG----VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GG-NRKTIL----EDEKRL  208 (316)
T ss_dssp             CSSSCEEEEEETTS----CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SC-SCEEEE----ECTTTT
T ss_pred             cCCCCeEEEEcCCC----CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC-CC-ceEEEe----ecCCcc
Confidence            31125666666642    22232213344578899999987777766  57799999998 32 222220    001122


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      .....+++.. + .++.+-...+.|..+|..+++.
T Consensus       209 ~~P~giav~~-~-~ly~~d~~~~~V~~~~~~~g~~  241 (316)
T 1ijq_A          209 AHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSD  241 (316)
T ss_dssp             SSEEEEEEET-T-EEEEEETTTTEEEEEETTTCCC
T ss_pred             CCcEEEEEEC-C-EEEEEECCCCeEEEEeCCCCcc
Confidence            3456777753 4 6666666778899999877664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.82  E-value=0.0027  Score=62.52  Aligned_cols=206  Identities=8%  Similarity=0.062  Sum_probs=104.4

Q ss_pred             eeEEEEEEcCCCCEEEEEe-CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce-eec-
Q 014005          116 INRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE-WTE-  192 (432)
Q Consensus       116 v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~-  192 (432)
                      ..++++  ..++++++.|+ .++.+.+||..+++...+..+....            .-..+...++++.++.|+ ... 
T Consensus       245 ~~~~~~--~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R------------~~~s~~~~~dg~iyv~GG~~~~~  310 (656)
T 1k3i_A          245 CPGISM--DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR------------GYQSSATMSDGRVFTIGGSWSGG  310 (656)
T ss_dssp             SCEEEE--CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC------------SSCEEEECTTSCEEEECCCCCSS
T ss_pred             cccccC--CCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccc------------cccceEEecCCeEEEEeCcccCC
Confidence            345666  67899999987 4568999999988776654332211            112233445677776666 311 


Q ss_pred             --cceEEEEeecccccceeeEEe----ecCCCCCeeEEEeCCCCCEEEEE-cC---------CeEEEEeCCCCCceeeEe
Q 014005          193 --NMATKIANVGNSVHARCQKVY----PHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIV  256 (432)
Q Consensus       193 --~~~v~i~d~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~-~d---------~~i~lwd~~~~~~~~~~~  256 (432)
                        ...+.+||....   +-...-    ....... ....+..++..++.| .+         ..+..||.. .+......
T Consensus       311 ~~~~~~e~yd~~t~---~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~-~~~w~~~~  385 (656)
T 1k3i_A          311 VFEKNGEVYSPSSK---TWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS-GSGDVKSA  385 (656)
T ss_dssp             SCCCCEEEEETTTT---EEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS-TTCEEEEE
T ss_pred             cccccceEeCCCCC---cceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecC-CcceeecC
Confidence              246888988732   211110    0000000 001122344444444 44         356778887 33322221


Q ss_pred             ecCCCC--cCCCCcceEEEEEcC-CCCcEEEEEeCCC-----------eEEEEEccccccccccceeecccccccCCccc
Q 014005          257 DMKPSN--MDDLTEVITSAEFHP-IYCNLLAYSSSRG-----------FVRLVDMRQSALCDHSARILRDAAESHGSKSF  322 (432)
Q Consensus       257 ~~~~~~--~~~~~~~v~~~~~~p-~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~  322 (432)
                      ...+..  .......-.++.|.. ++ ++++.|+.++           .|.+||..+..-     ..... ...+.    
T Consensus       386 ~~~~~~~~~~~~~~~~~av~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W-----~~~~~-~~mp~----  454 (656)
T 1k3i_A          386 GKRQSNRGVAPDAMCGNAVMYDAVKG-KILTFGGSPDYQDSDATTNAHIITLGEPGTSPN-----TVFAS-NGLYF----  454 (656)
T ss_dssp             EECEETTEECCCCBTCEEEEEETTTT-EEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE-----EEECT-TCCSS----
T ss_pred             CccccccccCCCCCCCceEeccCCCC-eEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe-----eEEcc-CCCCC----
Confidence            100000  000011224455544 55 8888888543           677888776542     22210 00011    


Q ss_pred             eeeeecceeEEEEcCCCCEEEEee-C-----------CeEEEEec
Q 014005          323 FTEIIASISDIKFANDGQHLLSRD-Y-----------MNLKVFRY  355 (432)
Q Consensus       323 ~~~~~~~v~~~~~s~dg~~l~s~~-~-----------~~i~iwd~  355 (432)
                          ...-.++...|+|++++.|+ +           ..+.+||.
T Consensus       455 ----~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp  495 (656)
T 1k3i_A          455 ----ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVP  495 (656)
T ss_dssp             ----CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEG
T ss_pred             ----CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcC
Confidence                11223456778999998863 1           46889988

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.82  E-value=0.015  Score=51.41  Aligned_cols=198  Identities=6%  Similarity=-0.030  Sum_probs=109.3

Q ss_pred             cceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccC----cceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          114 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRD----QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                      .....++|  ++.+..++.+ ...+.|..+++.+    .....+.....             .....+++++.+..++..
T Consensus        30 ~~p~g~~~--d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~-------------~~p~glavd~~~~~ly~~   94 (316)
T 1ijq_A           30 RNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-------------QAPDGLAVDWIHSNIYWT   94 (316)
T ss_dssp             SSEEEEEE--ETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC-------------SCCCEEEEETTTTEEEEE
T ss_pred             CceEEEEE--EeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC-------------CCcCEEEEeecCCeEEEE
Confidence            55778999  6665555544 5568999999876    22222211100             234556666544433332


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cC-CeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      .. ..+.|.+.++...   ...... .........++++|.+..+..+  .. +.|...+++  +.....+      ...
T Consensus        95 d~-~~~~I~~~~~~g~---~~~~~~-~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--G~~~~~~------~~~  161 (316)
T 1ijq_A           95 DS-VLGTVSVADTKGV---KRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSL------VTE  161 (316)
T ss_dssp             ET-TTTEEEEEETTSS---SEEEEE-ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEE------ECS
T ss_pred             EC-CCCEEEEEeCCCC---ceEEEE-ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--CCCeEEE------EEC
Confidence            11 1567888877632   222222 3344578899999966665554  33 788888887  3333322      022


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                      .-...+.++++|++..+..+-+..+.|..+|+.....     +.+.....          ......++++.. +.+..+.
T Consensus       162 ~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-----~~~~~~~~----------~~~~P~giav~~-~~ly~~d  225 (316)
T 1ijq_A          162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-----KTILEDEK----------RLAHPFSLAVFE-DKVFWTD  225 (316)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEEECTT----------TTSSEEEEEEET-TEEEEEE
T ss_pred             CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-----EEEeecCC----------ccCCcEEEEEEC-CEEEEEE
Confidence            2346789999998734444445667999999874322     33321000          012355777753 4444443


Q ss_pred             -eCCeEEEEec
Q 014005          346 -DYMNLKVFRY  355 (432)
Q Consensus       346 -~~~~i~iwd~  355 (432)
                       ..+.|..+|.
T Consensus       226 ~~~~~V~~~~~  236 (316)
T 1ijq_A          226 IINEAIFSANR  236 (316)
T ss_dssp             TTTTEEEEEET
T ss_pred             CCCCeEEEEeC
Confidence             3388888886

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.81  E-value=0.016  Score=51.42  Aligned_cols=156  Identities=9%  Similarity=0.010  Sum_probs=86.8

Q ss_pred             cccccccCCCCCcceecceeeccceEEE-EeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCC
Q 014005          171 KNFMNEHNPPSFAHGYHLEWTENMATKI-ANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEIS  249 (432)
Q Consensus       171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i-~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~  249 (432)
                      ..+..+.+.+++.+++.+.   .+.+.. .|-. ....+.+.   ......+..+.+.++++.++.+.+|.++..+.+ .
T Consensus       163 ~~~~~~~~~~~~~~~~~g~---~G~~~~S~d~g-G~tW~~~~---~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D-~  234 (327)
T 2xbg_A          163 GVMRNLNRSPSGEYVAVSS---RGSFYSTWEPG-QTAWEPHN---RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPD-N  234 (327)
T ss_dssp             CCEEEEEECTTSCEEEEET---TSSEEEEECTT-CSSCEEEE---CCSSSCEEEEEECTTSCEEEEETTTEEEEEETT-E
T ss_pred             cceEEEEEcCCCcEEEEEC---CCcEEEEeCCC-CCceeECC---CCCCCccceeEECCCCCEEEEeCCceEEEecCC-C
Confidence            3566777778777665543   233222 2210 11222221   344567889999999987777788888776433 2


Q ss_pred             CceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecc
Q 014005          250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS  329 (432)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~  329 (432)
                      +.....+.. + . ......+..+.+.+++ .+++++ .+|.+ .+....|+.    ...+... . .        ....
T Consensus       235 G~tW~~~~~-~-~-~~~~~~~~~v~~~~~~-~~~~~g-~~g~i-~~S~DgG~t----W~~~~~~-~-~--------~~~~  294 (327)
T 2xbg_A          235 SENWGELLS-P-L-RRNSVGFLDLAYRTPN-EVWLAG-GAGAL-LCSQDGGQT----WQQDVDV-K-K--------VPSN  294 (327)
T ss_dssp             EEEECCCBC-T-T-SSCCSCEEEEEESSSS-CEEEEE-STTCE-EEESSTTSS----CEECGGG-T-T--------SSSC
T ss_pred             CCeeEeccC-C-c-ccCCcceEEEEecCCC-EEEEEe-CCCeE-EEeCCCCcc----cEEcCcc-C-C--------CCCC
Confidence            333222100 0 0 0122358899999876 766655 46766 334343432    2222210 0 0        0245


Q ss_pred             eeEEEEcCCCCEEEEeeCCeEEEEe
Q 014005          330 ISDIKFANDGQHLLSRDYMNLKVFR  354 (432)
Q Consensus       330 v~~~~~s~dg~~l~s~~~~~i~iwd  354 (432)
                      +.++.|.+++++++.|.+|.|.-++
T Consensus       295 ~~~v~~~~~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          295 FYKILFFSPDQGFILGQKGILLRYV  319 (327)
T ss_dssp             CCEEEEEETTEEEEECSTTEEEEEC
T ss_pred             eEEEEEECCCceEEEcCCceEEEEc
Confidence            7788888778888888888776654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.79  E-value=0.0028  Score=62.36  Aligned_cols=243  Identities=9%  Similarity=0.013  Sum_probs=123.4

Q ss_pred             EEEEEEcCCCCEEEEecc-cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           35 VSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        35 V~~~~fsp~g~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      ..++++.++|++++.|+. +..+.+||..+.+-                         ..+..+...             
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W-------------------------~~~~~~~~~-------------  286 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW-------------------------IPGPDMQVA-------------  286 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE-------------------------EECCCCSSC-------------
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCce-------------------------eECCCCCcc-------------
Confidence            345778899999999884 45799999877541                         111111100             


Q ss_pred             cceeEEEEEEcCCCCEEEEEe-CC-----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          114 EKINRVRWCAAPNGSMFILST-ND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                      ..-.++..  .++++.++.|+ .+     ..+.+||..+++...+......+       ... ..- ...+..++...+.
T Consensus       287 R~~~s~~~--~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p-------~~~-~~~-~~~~~~~~~iyv~  355 (656)
T 1k3i_A          287 RGYQSSAT--MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP-------MLT-ADK-QGLYRSDNHAWLF  355 (656)
T ss_dssp             CSSCEEEE--CTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGG-------GCC-CCT-TGGGTTTCSCCEE
T ss_pred             ccccceEE--ecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccc-------ccc-ccc-cceeecCCceEEE
Confidence            11233445  46898999988 34     57999999988766542211000       000 000 1122233333333


Q ss_pred             ceee-------ccceEEEEeecccccceeeEEeecC-----CCCCeeEEEeC-CCCCEEEEE-cCC-----------eEE
Q 014005          188 LEWT-------ENMATKIANVGNSVHARCQKVYPHA-----HDFNINSISNN-SDCETFVSA-DDL-----------RIN  242 (432)
Q Consensus       188 ~~~~-------~~~~v~i~d~~~~~~~~~~~~~~~~-----~~~~i~~~~~~-~~~~~l~~~-~d~-----------~i~  242 (432)
                      +...       ....+..||................     ....-.++.+. .++++++.| .++           .+.
T Consensus       356 Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~  435 (656)
T 1k3i_A          356 GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIIT  435 (656)
T ss_dssp             ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEE
T ss_pred             ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEE
Confidence            3220       1346777887643211111111000     01122334443 367777777 532           577


Q ss_pred             EEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC-----------CeEEEEEccccccccccceeec
Q 014005          243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----------GFVRLVDMRQSALCDHSARILR  311 (432)
Q Consensus       243 lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~  311 (432)
                      +||.. ...-....   ...+. ....-.++...|++ ++++.|+.+           ..+.+||..+++-     ..+.
T Consensus       436 ~yd~~-~~~W~~~~---~~~mp-~~R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W-----~~~~  504 (656)
T 1k3i_A          436 LGEPG-TSPNTVFA---SNGLY-FARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF-----YKQN  504 (656)
T ss_dssp             CCSTT-SCCEEEEC---TTCCS-SCCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE-----EECC
T ss_pred             cCCCC-CCCeeEEc---cCCCC-CCcccCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCCce-----eecC
Confidence            78877 33322211   00111 11112345667888 899998854           4689999887542     2221


Q ss_pred             ccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005          312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (432)
Q Consensus       312 ~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~  347 (432)
                      .   .+..       ........+.|||+.++.|+.
T Consensus       505 ~---~~~~-------R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          505 P---NSIV-------RVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             C---CSSC-------CCTTEEEEECTTSCEEEEECC
T ss_pred             C---CCCc-------cccccHhhcCCCcEEEecCCC
Confidence            1   0000       122234556799999998753

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.78  E-value=0.017  Score=50.99  Aligned_cols=203  Identities=10%  Similarity=-0.031  Sum_probs=117.5

Q ss_pred             CcEEEEEEcCCCC-EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           33 DIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        33 ~~V~~~~fsp~g~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ....+++|++.+. ++.+-...+.|..++.++....                          ...+...-          
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~--------------------------~~~~~~~l----------   78 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------------------------QNVVVSGL----------   78 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC--------------------------CEEEEECC----------
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce--------------------------EEEEcCCC----------
Confidence            3566888988544 4455455678888887664311                          01111111          


Q ss_pred             hhcceeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          112 IEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                        .....+++  .+. +.++++-...+.|.++++.+.....+.....             .....++++|.+..++....
T Consensus        79 --~~p~glav--d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~-------------~~P~giavdp~~g~ly~td~  141 (318)
T 3sov_A           79 --LSPDGLAC--DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL-------------DQPRAIALDPSSGFMYWTDW  141 (318)
T ss_dssp             --SCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-------------SSEEEEEEEGGGTEEEEEEC
T ss_pred             --CCccEEEE--EcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCC-------------CCccEEEEeCCCCEEEEEec
Confidence              34567888  554 4444554567889999987654333321111             23456777776555554433


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      ...+.|...+++.    .....+....-...+.+++++++..|..+  ..+.|..+|++ ... .+.+      ..+...
T Consensus       142 ~~~~~I~r~~~dG----~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d-G~~-~~~~------~~~~~~  209 (318)
T 3sov_A          142 GEVPKIERAGMDG----SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-GTN-RQAV------VKGSLP  209 (318)
T ss_dssp             SSSCEEEEEETTS----CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCS-CEEE------ECSCCS
T ss_pred             CCCCEEEEEEcCC----CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC-CCc-eEEE------ecCCCC
Confidence            1235566666542    22222212334567899999977777766  67889999988 322 2222      022234


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      ....+++..+  .++.+-...+.|..+|..+|+.
T Consensus       210 ~P~glav~~~--~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          210 HPFALTLFED--ILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             CEEEEEEETT--EEEEEETTTTEEEEEETTTCCS
T ss_pred             CceEEEEeCC--EEEEEecCCCeEEEEECCCCCc
Confidence            4667777633  5666666778899999877764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.76  E-value=0.0023  Score=63.03  Aligned_cols=59  Identities=7%  Similarity=0.021  Sum_probs=38.4

Q ss_pred             CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec---CcceeEeec
Q 014005          289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY---EPVMTLSFC  364 (432)
Q Consensus       289 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~~  364 (432)
                      +|.|..||+.+++..    -....              ........+...|.+++.++. +.++.||.   +.+..++..
T Consensus       437 ~g~l~A~D~~tG~~~----W~~~~--------------~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          437 SGALLAWDPVKQKAA----WKVPY--------------PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             EEEEEEEETTTTEEE----EEEEE--------------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cceEEEEeCCCCcEE----EEccC--------------CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence            478999999998863    23322              123333344555777777754 99999999   666666654


Q ss_pred             c
Q 014005          365 G  365 (432)
Q Consensus       365 ~  365 (432)
                      .
T Consensus       499 ~  499 (668)
T 1kv9_A          499 S  499 (668)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.73  E-value=0.011  Score=59.19  Aligned_cols=160  Identities=13%  Similarity=0.113  Sum_probs=92.5

Q ss_pred             ceeEEEEEEc-CCCCEEEEEeC-CC----eEEEEEccCc-ceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          115 KINRVRWCAA-PNGSMFILSTN-DK----TIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       115 ~v~~l~~~~s-~~~~~l~s~~~-d~----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                      .+...+|  | |||++++.+.. +|    .|+++|+.++ +... ..+              ......+.|+|+++.++.
T Consensus       175 ~~~~~~~--S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~--------------~~~~~~~~WspDg~~l~y  237 (751)
T 2xe4_A          175 DVMEVKP--APPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKV--------------SGTNGEIVWGPDHTSLFY  237 (751)
T ss_dssp             EEEEEEE--CTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCE--------------EEECSCCEECSSTTEEEE
T ss_pred             EEeeeEe--cCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-ccc--------------cCceeeEEEecCCCEEEE
Confidence            5677888  9 99998886633 22    5999999988 5210 000              123457889999987776


Q ss_pred             ceeecc---ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c---CCeEEEEeCCCCCcee--eEeec
Q 014005          188 LEWTEN---MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEISDQCF--NIVDM  258 (432)
Q Consensus       188 ~~~~~~---~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~---d~~i~lwd~~~~~~~~--~~~~~  258 (432)
                      ......   ..|..+++..... .....+..........+.|+|||++|+.. .   ...|+++|+.......  ..+  
T Consensus       238 ~~~d~~~~~~~v~~~~lgt~~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l--  314 (751)
T 2xe4_A          238 VTKDETLRENKVWRHVMGKLQS-EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV--  314 (751)
T ss_dssp             EEECTTCCEEEEEEEETTSCGG-GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES--
T ss_pred             EEECCCCCCCEEEEEECCCCch-hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe--
Confidence            654221   3566677653211 12233312333456788999999998865 2   3467888887321122  222  


Q ss_pred             CCCCcCCCCcceEEEEEcCCCCcEEEEEeCC--C--eEEEEEccc
Q 014005          259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--G--FVRLVDMRQ  299 (432)
Q Consensus       259 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--g--~i~iwd~~~  299 (432)
                          .........++.|+..+ .+++....+  +  .|..+|+.+
T Consensus       315 ----~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          315 ----RPREKGVRYDVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             ----SCCCTTCCEEEEEETTT-EEEEEECTTTCTTCEEEEEETTS
T ss_pred             ----ecCCCCceEEEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCC
Confidence                12233445666665544 555555544  3  566666654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.70  E-value=0.038  Score=53.19  Aligned_cols=159  Identities=8%  Similarity=-0.034  Sum_probs=86.2

Q ss_pred             CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCC--CCcceecceee----ccceEEEEe
Q 014005          127 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--SFAHGYHLEWT----ENMATKIAN  200 (432)
Q Consensus       127 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~----~~~~v~i~d  200 (432)
                      +..++.++.|+.+..+|..+++..-......+.           . -..+..+|  .+..++.+...    .++.+..+|
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-----------~-~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D  182 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPK-----------V-GSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFD  182 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGG-----------G-TCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCC-----------c-cceeccCCEEECCEEEEEecCCccCCCCEEEEEE
Confidence            457888888999999999998754332222110           0 00111111  12223333221    157888888


Q ss_pred             ecccccceeeEEeecCCCC-------------------------------------CeeEEEeCCCCCEEEEE-cC----
Q 014005          201 VGNSVHARCQKVYPHAHDF-------------------------------------NINSISNNSDCETFVSA-DD----  238 (432)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~-------------------------------------~i~~~~~~~~~~~l~~~-~d----  238 (432)
                      ..   +++.+..+......                                     ....+++.++...+..+ .+    
T Consensus       183 ~~---tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~  259 (571)
T 2ad6_A          183 LK---TGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPW  259 (571)
T ss_dssp             TT---TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCS
T ss_pred             CC---CCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccc
Confidence            87   55555544211100                                     00134566665666655 32    


Q ss_pred             ------------CeEEEEeCCCCCceeeEeecCCCCc---CCCCcceEEEEEcCCCC--cEEEEEeCCCeEEEEEccccc
Q 014005          239 ------------LRINLWNLEISDQCFNIVDMKPSNM---DDLTEVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQSA  301 (432)
Q Consensus       239 ------------~~i~lwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~--~~l~~~~~dg~i~iwd~~~~~  301 (432)
                                  +.|..+|.+ +++....++..+...   .....++. +...++|.  ++++.++.+|.+.++|..+|+
T Consensus       260 ~~~~~~gd~~y~~~v~Ald~~-tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  337 (571)
T 2ad6_A          260 NETMRPGDNKWTMTIWGRDLD-TGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN  337 (571)
T ss_dssp             CGGGSCSCCTTTTEEEEEETT-TCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred             cCCccCCCceeEEEEEEEecC-CCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence                        358899998 666666553322111   11122222 23334662  257778899999999999988


Q ss_pred             c
Q 014005          302 L  302 (432)
Q Consensus       302 ~  302 (432)
                      +
T Consensus       338 ~  338 (571)
T 2ad6_A          338 L  338 (571)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.67  E-value=0.04  Score=53.18  Aligned_cols=62  Identities=15%  Similarity=0.097  Sum_probs=38.1

Q ss_pred             CeEEEEeCCCCCceeeEeecCCCCc---CCCCcceEEEEEc-CCCC--cEEEEEeCCCeEEEEEcccccc
Q 014005          239 LRINLWNLEISDQCFNIVDMKPSNM---DDLTEVITSAEFH-PIYC--NLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       239 ~~i~lwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~-p~~~--~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      +.|..+|.+ +++....++..+...   .....++. +... .+|.  ..++.++.+|.++++|.++|++
T Consensus       291 ~~v~AlD~~-TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  358 (582)
T 1flg_A          291 SGQVGVDPS-SGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL  358 (582)
T ss_dssp             SEEEEECTT-TCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             ceEEEEeCC-CCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence            578999998 666666553322210   11112221 2222 4552  3788899999999999999886

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.66  E-value=0.018  Score=57.54  Aligned_cols=210  Identities=8%  Similarity=-0.059  Sum_probs=118.9

Q ss_pred             CCCcEEEEEEcCCCCE-EEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           31 DVDIVSAIEFDKTGDY-LAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      ....+..|+|++.+.. +++-...+.|+.++++.....                       ......+....        
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-----------------------~~~~~vi~~~l--------  470 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------------------SSYDTVISRDI--------  470 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------------CEEEECSSC--------
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-----------------------cceeEEEecCC--------
Confidence            3456778899885444 445455677888887653210                       00001122122        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEE-EeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          110 LEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                          .....|++  .+.+..|+. -...+.|.+.++.+.....+.....             .....++++|...+++..
T Consensus       471 ----~~P~GLAv--D~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l-------------~~P~gIaVDp~~g~LYwt  531 (791)
T 3m0c_C          471 ----QAPDGLAV--DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG-------------SKPRAIVVDPVHGFMYWT  531 (791)
T ss_dssp             ----SCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT-------------CCEEEEEEETTTTEEEEE
T ss_pred             ----CCcceeee--eecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCC-------------CCcceEEEecCCCCEEEe
Confidence                45667888  666655544 4567899999998665444432211             235678888876666554


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      .....+.|...++..    ...+.+........+.|++++.+..|..+  ..+.|...+++ ......++.     ....
T Consensus       532 D~g~~~~I~~~~~dG----~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d-G~~~~~v~~-----~~~~  601 (791)
T 3m0c_C          532 DWGTPAKIKKGGLNG----VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILE-----DEKR  601 (791)
T ss_dssp             ECSSSCEEEEEETTS----CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEE-----CTTT
T ss_pred             cCCCCCeEEEEecCC----CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC-CCceEEEec-----CCCc
Confidence            432235666666652    22233323444678899999877777766  57789999988 333222220     0111


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      -....+|++..+  .++.+-...+.|...|..+|+.
T Consensus       602 l~~P~glav~~~--~lYwtD~~~~~I~~~dk~tG~~  635 (791)
T 3m0c_C          602 LAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSD  635 (791)
T ss_dssp             TSSEEEEEEETT--EEEEEETTTTEEEEEETTTCCC
T ss_pred             cCCCCEEEEeCC--EEEEEECCCCEEEEEeCCCCcc
Confidence            223456666432  5555555677888888777654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.65  E-value=0.035  Score=50.81  Aligned_cols=197  Identities=7%  Similarity=-0.000  Sum_probs=107.5

Q ss_pred             cceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcc----eeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          114 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQK----VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                      ..+..++|  ++.+..|+.+ ...+.|..+++.+..    ...+.....             .....+++++.+..++..
T Consensus       112 ~~~~~l~~--d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~-------------~~p~glavD~~~~~lY~~  176 (400)
T 3p5b_L          112 RNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-------------QAPDGLAVDWIHSNIYWT  176 (400)
T ss_dssp             SCEEEEEE--ETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC-------------SCEEEEEEETTTTEEEEE
T ss_pred             CcceEEee--eeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC-------------CCcccEEEEecCCceEEE
Confidence            56789999  6655555555 456888888886522    222211110             234456666543333332


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--c-CCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~-d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      .. ..+.|.+.+++..   .....+ .........++++|.+..|..+  . .+.|...+++ .......+       ..
T Consensus       177 d~-~~~~I~~~~~~g~---~~~~l~-~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~~~~~-------~~  243 (400)
T 3p5b_L          177 DS-VLGTVSVADTKGV---KRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV-------TE  243 (400)
T ss_dssp             ET-TTTEEEEECTTTC---SEEEEE-ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSCEEEE-------CS
T ss_pred             EC-CCCeEEEEeCCCC---ceEEEE-eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCccEEEE-------EC
Confidence            21 1557777777532   222222 3344568899999976666655  2 4788888887 32222222       22


Q ss_pred             CCcceEEEEEcCCCCcEEEEE-eCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          266 LTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      .-...+.++++|++ ..|..+ ...+.|..+|+.....     +.+.....          ......++++.. +.++.+
T Consensus       244 ~l~~P~glavd~~~-~~lY~aD~~~~~I~~~d~dG~~~-----~~~~~~~~----------~l~~P~gl~v~~-~~lywt  306 (400)
T 3p5b_L          244 NIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNR-----KTILEDEK----------RLAHPFSLAVFE-DKVFWT  306 (400)
T ss_dssp             SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCCC-----EEEEECSS----------TTSSEEEEEEET-TEEEEE
T ss_pred             CCCceEEEEEEeCC-CEEEEEECCCCEEEEEeCCCCcc-----EEEEeCCC----------CCCCCEEEEEeC-CEEEEe
Confidence            33568999999887 555555 4567899999874332     22221000          012344666643 333334


Q ss_pred             eeC-CeEEEEec
Q 014005          345 RDY-MNLKVFRY  355 (432)
Q Consensus       345 ~~~-~~i~iwd~  355 (432)
                      ... +.|..+|.
T Consensus       307 d~~~~~V~~~~~  318 (400)
T 3p5b_L          307 DIINEAIFSANR  318 (400)
T ss_dssp             ESSSCSEEEEES
T ss_pred             cCCCCeEEEEEc
Confidence            333 78888884

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.65  E-value=0.028  Score=49.62  Aligned_cols=195  Identities=9%  Similarity=0.011  Sum_probs=109.8

Q ss_pred             cceeEEEEEEcCCCCE-EEEEeCCCeEEEEEccCcce-eeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          114 EKINRVRWCAAPNGSM-FILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                      .....+.|  .+.+.. +.+-...+.|..+++.++.. ..+.....             .....+++.+.+..++.... 
T Consensus        35 ~~~~~ld~--d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l-------------~~p~glavd~~~g~ly~~d~-   98 (318)
T 3sov_A           35 EDAAAVDF--VFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL-------------LSPDGLACDWLGEKLYWTDS-   98 (318)
T ss_dssp             EEEEEEEE--EGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC-------------SCCCEEEEETTTTEEEEEET-
T ss_pred             CccEEEEE--EeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC-------------CCccEEEEEcCCCeEEEEEC-
Confidence            45668899  554444 44445678899999876532 11111110             23445666654443333221 


Q ss_pred             ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c--CCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~--d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      ..+.|.+.+++..    ....+..........+++.|.+..+..+ .  .+.|...+++ .......+       ...-.
T Consensus        99 ~~~~I~~~~~dG~----~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~-------~~~l~  166 (318)
T 3sov_A           99 ETNRIEVSNLDGS----LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIII-------NSEIY  166 (318)
T ss_dssp             TTTEEEEEETTSC----SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEE-------CSSCS
T ss_pred             CCCEEEEEECCCC----cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEE-------ECCCC
Confidence            1567788877632    2222213445678899999876666655 2  5788888887 22222222       22234


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceee-cccccccCCccceeeeecceeEEEEcCCCCEEEEe-e
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D  346 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~  346 (432)
                      ..+.++++|++..+..+=+..+.|..+|+.....     +.+ .+.             .....++++..+ .++.+- .
T Consensus       167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-----~~~~~~~-------------~~~P~glav~~~-~lywtd~~  227 (318)
T 3sov_A          167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-----QAVVKGS-------------LPHPFALTLFED-ILYWTDWS  227 (318)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEECSC-------------CSCEEEEEEETT-EEEEEETT
T ss_pred             CccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-----EEEecCC-------------CCCceEEEEeCC-EEEEEecC
Confidence            5789999997734444445678899999874332     222 211             234566777544 333343 3


Q ss_pred             CCeEEEEec
Q 014005          347 YMNLKVFRY  355 (432)
Q Consensus       347 ~~~i~iwd~  355 (432)
                      .+.|..+|.
T Consensus       228 ~~~V~~~~~  236 (318)
T 3sov_A          228 THSILACNK  236 (318)
T ss_dssp             TTEEEEEET
T ss_pred             CCeEEEEEC
Confidence            388888887

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.64  E-value=0.00088  Score=66.26  Aligned_cols=160  Identities=7%  Similarity=-0.079  Sum_probs=90.5

Q ss_pred             eeEEEEEEcCC-CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005          116 INRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (432)
Q Consensus       116 v~~l~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  194 (432)
                      ...|++  .+. +.++++-...+.|.+.++.+.....+.....             .....++++|.+.+++.......+
T Consensus       455 P~glav--D~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~-------------~~P~giavDp~~g~ly~td~~~~~  519 (699)
T 1n7d_A          455 PDGLAV--DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQG-------------SKPRAIVVDPVHGFMYWTDWGTPA  519 (699)
T ss_dssp             CCCEEC--CCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSS-------------CCCCCEECCSSSSCCEECCCSSSC
T ss_pred             cceEEE--EeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCC-------------CCcceEEEccCCCcEEEcccCCCC
Confidence            445666  543 4444444566789999987665444322111             234677888876655554432135


Q ss_pred             eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (432)
Q Consensus       195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (432)
                      .|...++...    ..+.+........+.|+++|++..|..+  ..+.|..++++ ... .+.+- .   ..........
T Consensus       520 ~I~~~~~dG~----~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d-G~~-~~~~~-~---~~~~~~~P~g  589 (699)
T 1n7d_A          520 KIKKGGLNGV----DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGN-RKTIL-E---DEKRLAHPFS  589 (699)
T ss_dssp             CEEBCCSSSC----CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS-SSC-CEEEC-C---CSSSCSSCCC
T ss_pred             eEEEEeCCCC----CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC-CCc-eEEEE-e---cCCcCCCceE
Confidence            6666665421    1222212234467789999986666655  67889999987 322 22220 0   0111122345


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       273 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      +++..+  .++.+....+.|..+|..+++.
T Consensus       590 lavd~~--~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          590 LAVFED--KVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             CEEETT--EEEEECSTTTCEEEEETTTEEE
T ss_pred             eEEECC--EEEEEeCCCCeEEEEEccCCCc
Confidence            566543  5666666778999999877765

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.58  E-value=0.05  Score=54.67  Aligned_cols=264  Identities=8%  Similarity=0.012  Sum_probs=140.5

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ...|.++...++|.+. .|+..+-|.+++..+.......        .         +....+... ...      ..+.
T Consensus       257 ~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~--------~---------~~f~~~~~~-~~~------~~l~  311 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPE--------Q---------IRFEFIREG-DNN------YSLS  311 (781)
T ss_dssp             CCCEEEEEECTTSEEE-EEESSSCEEEEETTCC--------------------------CEEECBC-SST------TSBS
T ss_pred             CceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeee--------c---------cccccccCC-CCC------CCCC
Confidence            3569999988888754 4555456788887665421000        0         000000000 000      0000


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                       ...|.++..  ..+|. |-.|+.++-|..++...+............    .........|.++...+++. +..|+. 
T Consensus       312 -~~~v~~i~~--D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~v~~i~~d~~g~-lWigt~-  381 (781)
T 3v9f_A          312 -NASARYIFQ--DSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQM----NESSLSNKVVSSVCDDGQGK-LWIGTD-  381 (781)
T ss_dssp             -SSCEEEEEE--CSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CC----CSSCCSSSCEEEEEECTTSC-EEEEEB-
T ss_pred             -CCeEEEEEE--eCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccc----ccCCCCCcceEEEEEcCCCC-EEEEeC-
Confidence             156888888  77775 555666666888888766544332110000    00011124566776666554 334443 


Q ss_pred             ccceEEEEeecccccceeeEEe--ecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          192 ENMATKIANVGNSVHARCQKVY--PHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                       ++.+..++..   ........  .......|.++...+++.+.+...++.+..+|.+ +++ +..+..  .  ......
T Consensus       382 -~~Gl~~~~~~---~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~-~~~-~~~~~~--~--~~~~~~  451 (781)
T 3v9f_A          382 -GGGINVFENG---KRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTR-LKK-FQIIEL--E--KNELLD  451 (781)
T ss_dssp             -SSCEEEEETT---EEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSS-SCE-EEECCS--T--TTCCCC
T ss_pred             -CCcEEEEECC---CCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCC-CCc-EEEecc--C--CCCCCe
Confidence             4567777765   22111100  0123457899998888876554466778888887 333 333210  0  123457


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCe
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN  349 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~  349 (432)
                      |.++...+++ .+.+ |+. +.+..+|..+++.     ..+..-.....       ....|.++...++|++.+....+-
T Consensus       452 v~~i~~d~~g-~lwi-gt~-~Gl~~~~~~~~~~-----~~~~~~~~~~~-------~~~~i~~i~~d~~g~lWigt~~~G  516 (781)
T 3v9f_A          452 VRVFYEDKNK-KIWI-GTH-AGVFVIDLASKKV-----IHHYDTSNSQL-------LENFVRSIAQDSEGRFWIGTFGGG  516 (781)
T ss_dssp             EEEEEECTTS-EEEE-EET-TEEEEEESSSSSC-----CEEECTTTSSC-------SCSCEEEEEECTTCCEEEEESSSC
T ss_pred             EEEEEECCCC-CEEE-EEC-CceEEEeCCCCeE-----EecccCccccc-------ccceeEEEEEcCCCCEEEEEcCCC
Confidence            9999999887 6554 555 5688999876653     22221000000       035788999999998776654344


Q ss_pred             EEEEec
Q 014005          350 LKVFRY  355 (432)
Q Consensus       350 i~iwd~  355 (432)
                      +..||.
T Consensus       517 l~~~~~  522 (781)
T 3v9f_A          517 VGIYTP  522 (781)
T ss_dssp             EEEECT
T ss_pred             EEEEeC
Confidence            666776

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.56  E-value=0.026  Score=54.37  Aligned_cols=59  Identities=10%  Similarity=-0.001  Sum_probs=35.1

Q ss_pred             CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec---CcceeEeec
Q 014005          289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY---EPVMTLSFC  364 (432)
Q Consensus       289 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~---~~~~~~~~~  364 (432)
                      +|.|..||+.+++..    -.+..              ...+....+...+..++.+ .++.++.||.   +.+.+++..
T Consensus       443 ~g~l~a~D~~tG~~~----W~~~~--------------~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAK----WTKWE--------------KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             CEEEEEECTTTCCEE----EEEEE--------------SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCeEEEEECCCCCEE----EEecC--------------CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence            478999999988752    33322              1122222223334455555 4599999999   666666654


Q ss_pred             c
Q 014005          365 G  365 (432)
Q Consensus       365 ~  365 (432)
                      .
T Consensus       505 ~  505 (571)
T 2ad6_A          505 S  505 (571)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.46  E-value=0.053  Score=48.06  Aligned_cols=113  Identities=11%  Similarity=0.076  Sum_probs=67.2

Q ss_pred             cCCCCCeeEEEeCCCCCEEEEEcCCeE-EEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEE
Q 014005          215 HAHDFNINSISNNSDCETFVSADDLRI-NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  293 (432)
Q Consensus       215 ~~~~~~i~~~~~~~~~~~l~~~~d~~i-~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~  293 (432)
                      ......+..+.+.+++.+++.+.++.+ +-+|-.  +.....+.      ......+..+.+.+++ .+++ ++.+|.++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g--G~tW~~~~------~~~~~~~~~~~~~~~g-~~~~-~~~~G~~~  228 (327)
T 2xbg_A          159 QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG--QTAWEPHN------RTTSRRLHNMGFTPDG-RLWM-IVNGGKIA  228 (327)
T ss_dssp             CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT--CSSCEEEE------CCSSSCEEEEEECTTS-CEEE-EETTTEEE
T ss_pred             cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC--CCceeECC------CCCCCccceeEECCCC-CEEE-EeCCceEE
Confidence            345567889999999998888844444 334431  22222221      2334568899999987 6654 55678877


Q ss_pred             EEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeE
Q 014005          294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL  350 (432)
Q Consensus       294 iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i  350 (432)
                      +.+...++.    ...+.. +.  ..      ....+.++.+.+++..++.+.++.+
T Consensus       229 ~s~~D~G~t----W~~~~~-~~--~~------~~~~~~~v~~~~~~~~~~~g~~g~i  272 (327)
T 2xbg_A          229 FSDPDNSEN----WGELLS-PL--RR------NSVGFLDLAYRTPNEVWLAGGAGAL  272 (327)
T ss_dssp             EEETTEEEE----ECCCBC-TT--SS------CCSCEEEEEESSSSCEEEEESTTCE
T ss_pred             EecCCCCCe----eEeccC-Cc--cc------CCcceEEEEecCCCEEEEEeCCCeE
Confidence            764222332    111111 00  00      0235788999999998888877766

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.45  E-value=0.071  Score=53.26  Aligned_cols=159  Identities=8%  Similarity=-0.014  Sum_probs=93.3

Q ss_pred             cceeEEEEEEcCCCCEEE-EEeCCCeEEEEEccCcc----eeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          114 EKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQK----VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                      ..+..|+|  .+....|+ +-...+.|+.+++....    ...+.....             .....+++.+.+..|+..
T Consensus       424 ~~~~gl~~--d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l-------------~~P~GLAvD~~~~~LY~t  488 (791)
T 3m0c_C          424 RNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-------------QAPDGLAVDWIHSNIYWT  488 (791)
T ss_dssp             SSEEEEEE--ETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC-------------SCCCEEEEETTTTEEEEE
T ss_pred             CceEEEee--cccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC-------------CCcceeeeeecCCcEEEE
Confidence            56778999  66444444 44556788888887532    122211111             344567777666544443


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cC-CeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      .. ..+.|.+.++...    ..+++..........|+++|.+..|..+  .+ +.|...+++ ......++       ..
T Consensus       489 D~-~~~~I~v~~ldG~----~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~lv-------~~  555 (791)
T 3m0c_C          489 DS-VLGTVSVADTKGV----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV-------TE  555 (791)
T ss_dssp             ET-TTTEEEEEETTSS----SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE-------CS
T ss_pred             ec-CCCeEEEEeCCCC----eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEEE-------eC
Confidence            32 1567888887632    2223213445568899999976666655  33 778888888 33322222       23


Q ss_pred             CCcceEEEEEcCCCCcEEEEE-eCCCeEEEEEccccc
Q 014005          266 LTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSA  301 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~  301 (432)
                      .-...+.|++++.+ ..|+.+ ...+.|...|+....
T Consensus       556 ~l~~P~GLavD~~~-~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          556 NIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS
T ss_pred             CCCCceEEEEecCC-CeEEEEeCCCCcEEEEecCCCc
Confidence            33568999999877 455544 456789999987443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.41  E-value=0.11  Score=50.55  Aligned_cols=201  Identities=12%  Similarity=-0.022  Sum_probs=120.2

Q ss_pred             CCcEEEEEEcCCCCEEE-EecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           32 VDIVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      -..+..|+|++.+..|. +-..++.|..++++.....                           ..+....         
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~---------------------------~v~~~g~---------   79 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE---------------------------HVVEFGL---------   79 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------------------------EEECSSC---------
T ss_pred             CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE---------------------------EEEeCCC---------
Confidence            34678999999766554 4455678888887664311                           1111111         


Q ss_pred             hhhcceeEEEEEEcCCCCEE-EEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          111 EIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                         .....|++  .+.+..| .+-...+.|.+.++.+...+.+.....             .....++++|....++...
T Consensus        80 ---~~P~GlAv--D~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l-------------~~P~~iavdp~~G~lY~tD  141 (628)
T 4a0p_A           80 ---DYPEGMAV--DWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL-------------DSPRALALDPAEGFMYWTE  141 (628)
T ss_dssp             ---SCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSC-------------CCEEEEEEETTTTEEEEEE
T ss_pred             ---CCcceEEE--EeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCC-------------CCcccEEEccCCCeEEEeC
Confidence               34567777  5554444 444556889999987655433322111             3356778887655555544


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      ....+.|...++..    .....+ .......+.+++++++..|..+  ..+.|...|++. ... +++       ....
T Consensus       142 ~g~~~~I~r~~~dG----~~~~~l-~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG-~~~-~v~-------~~~l  207 (628)
T 4a0p_A          142 WGGKPKIDRAAMDG----SERTTL-VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-LNR-EVI-------ADDL  207 (628)
T ss_dssp             CSSSCEEEEEETTS----CSCEEE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSC-EEE-------EECC
T ss_pred             CCCCCEEEEEeCCC----CceEEE-ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC-Cce-EEe-------eccC
Confidence            31134555555542    222232 2345578899999987777777  678899999983 222 333       2222


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      .....+++.. + .++.+-...+.|...|..+++.
T Consensus       208 ~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          208 PHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             SCEEEEEEET-T-EEEEEETTTTEEEEEETTTCCS
T ss_pred             CCceEEEEEC-C-EEEEecCCCCEEEEEECCCCCc
Confidence            3456788765 3 5666666688999999777653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.40  E-value=0.01  Score=51.98  Aligned_cols=76  Identities=12%  Similarity=0.120  Sum_probs=53.0

Q ss_pred             CeeEEEeCCCCCEEEEE-cC-CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005          220 NINSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (432)
Q Consensus       220 ~i~~~~~~~~~~~l~~~-~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~  297 (432)
                      ..+.+++.++|+..+++ .. +.|...+.+  ++....+...... .......+.|+++|++ +.|++...+|.+..+|+
T Consensus       138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pd--G~~~~~~~~~~~~-~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~  213 (334)
T 2p9w_A          138 GVVQSAQDRDGNSYVAFALGMPAIARVSAD--GKTVSTFAWESGN-GGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDV  213 (334)
T ss_dssp             EEEEEEECTTSCEEEEEEESSCEEEEECTT--SCCEEEEEECCCC-SSSCCSCSEEEEETTT-TEEEEESSSSSEEEEEC
T ss_pred             CCceeEECCCCCEEEeCCCCCCeEEEEeCC--CCEEeeeeecCCC-cccccCcceEEEeCCC-CEEEEEcCCCeEEEEcC
Confidence            47789999999988887 66 777766666  3334433221111 1122346799999999 77777777999999998


Q ss_pred             cc
Q 014005          298 RQ  299 (432)
Q Consensus       298 ~~  299 (432)
                      ++
T Consensus       214 ~~  215 (334)
T 2p9w_A          214 SK  215 (334)
T ss_dssp             SS
T ss_pred             CC
Confidence            83

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.34  E-value=0.0083  Score=55.56  Aligned_cols=111  Identities=14%  Similarity=0.054  Sum_probs=68.2

Q ss_pred             CCCeeEEEeCCCCCEEEEE-c-CC----eEEEEeCCCCCcee--eEeecCCCCcCCCCcceEEEEEcC-CCCcEEEEEeC
Q 014005          218 DFNINSISNNSDCETFVSA-D-DL----RINLWNLEISDQCF--NIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSS  288 (432)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~-~-d~----~i~lwd~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~  288 (432)
                      ......++++++++.|.++ . ++    .+...+.+  +...  ..+       . .......++++| ++ .++++-..
T Consensus       178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~--g~~~~~~~l-------~-~~~~p~giavdp~~g-~lyv~d~~  246 (430)
T 3tc9_A          178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE--SGFKVITEL-------T-KGQNCNGAETHPING-ELYFNSWN  246 (430)
T ss_dssp             CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG--GTSCSEEEE-------E-ECSSCCCEEECTTTC-CEEEEETT
T ss_pred             CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC--Cceeeeeee-------c-cCCCceEEEEeCCCC-EEEEEECC
Confidence            3467889999999966655 3 22    23334433  2211  121       1 123356788999 55 77766667


Q ss_pred             CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-C-CeEEEEec
Q 014005          289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKVFRY  355 (432)
Q Consensus       289 dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~-~~i~iwd~  355 (432)
                      ++.|..+|...+..    .......            .......++|+|+|++|...+ . ++|..++.
T Consensus       247 ~~~V~~~~~~~~~~----~~~~~~~------------~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~  299 (430)
T 3tc9_A          247 AGQVFRYDFTTQET----TPLFTIQ------------DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDY  299 (430)
T ss_dssp             TTEEEEEETTTTEE----EEEEECS------------SSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEECCCCcE----EEEEEcC------------CCCcceeEEEcCCCCEEEEEECCCCEEEEEeC
Confidence            88999999876542    1111110            013567899999999665543 3 89999887

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.34  E-value=0.042  Score=49.70  Aligned_cols=124  Identities=14%  Similarity=0.194  Sum_probs=79.7

Q ss_pred             CeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCc-----------eeeEeecCCCCcCCCCcceEEEEEcCCCC--cEEEEE
Q 014005          220 NINSISNNSDCETFVSADDLRINLWNLEISDQ-----------CFNIVDMKPSNMDDLTEVITSAEFHPIYC--NLLAYS  286 (432)
Q Consensus       220 ~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~  286 (432)
                      .|..+..+|+|++||...+..|.+-.+.....           ..+.+.+.+.+ ......|..+.|||-+.  ..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~-~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE-VGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC---CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcc-cCCCCceeEEEeccccCCCCeEEEE
Confidence            57789999999999988888999988872211           12234333321 12357899999999763  488899


Q ss_pred             eCCCeEEEEEccccccccccceeecccccccCCccce--eeeecceeEEEEcCCCCEEEE--eeC-CeEEEE
Q 014005          287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF--TEIIASISDIKFANDGQHLLS--RDY-MNLKVF  353 (432)
Q Consensus       287 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~--~~~~~~v~~~~~s~dg~~l~s--~~~-~~i~iw  353 (432)
                      ..|+.|++||+......  +. .+.. ..     ..|  ......|.+++|.++|--|..  ... |.|+-.
T Consensus       146 tsD~~Ir~yDl~~s~~~--P~-~L~k-~~-----~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEK--PI-VLNK-PN-----NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSC--CE-EESC-CC-----SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCC--Cc-chhc-cc-----cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            99999999999863321  11 2322 10     001  111257889999998865544  334 666554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.31  E-value=0.053  Score=50.14  Aligned_cols=211  Identities=9%  Similarity=0.015  Sum_probs=113.1

Q ss_pred             ceeEEEEEEcCC--CCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          115 KINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       115 ~v~~l~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      ....++|  +++  ...|..+...+.|+.+|..++....+...   .           .....+++++++...++.....
T Consensus       140 ~P~gvav--d~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~---~-----------~~P~giavd~dG~lyVad~~~~  203 (433)
T 4hw6_A          140 NIWRMMF--DPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTN---I-----------GQCADVNFTLNGDMVVVDDQSS  203 (433)
T ss_dssp             CCCEEEE--CTTTTTCEEEEECBTSCEEEEETTTTEEEEECCC---C-----------SCEEEEEECTTCCEEEEECCSC
T ss_pred             CCceEEE--ccccCCCEEEEEeCCCCEEEEECCCCEEEEeecC---C-----------CCccEEEECCCCCEEEEcCCCC
Confidence            4568899  774  34555554448899999987776554331   1           3467888899888333322100


Q ss_pred             --cceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCCCCCce-eeEeecCCCCcCCCC
Q 014005          193 --NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLT  267 (432)
Q Consensus       193 --~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~  267 (432)
                        ...+...+.......  ...+  ........++++| ++.++++- .++.|+.+|.. .+.. ...+.      .+..
T Consensus       204 ~~~~gv~~~~~~~~~~~--~~~~--~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~-~g~~~~~~~~------~~~~  272 (433)
T 4hw6_A          204 DTNTGIYLFTRASGFTE--RLSL--CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA-TGTLTEEEVM------MDTK  272 (433)
T ss_dssp             TTSEEEEEECGGGTTCC--EEEE--EECSSBCCCEECTTTCCEEECBTTCSEEEEECTT-TCCEEEEEEE------CSCC
T ss_pred             cccceEEEEECCCCeec--cccc--cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC-CCeEEEEEec------cCCC
Confidence              111222222211110  1122  1234567789999 66655555 78889999987 3443 22221      1112


Q ss_pred             cceEEEEEcCCCCc-EEEEEeCCCeEEEEEccc--cccccccceeecccccccCCc-c-ceeeeecceeEEEE-------
Q 014005          268 EVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSK-S-FFTEIIASISDIKF-------  335 (432)
Q Consensus       268 ~~v~~~~~~p~~~~-~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~h~~~~~~~-~-~~~~~~~~v~~~~~-------  335 (432)
                      ..-..++|+|++ + +.++-...+.|+.++...  +...  ....+.+........ . ...........+++       
T Consensus       273 ~~~~~ia~dpdG-~~LYvad~~~~~I~~~~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~  349 (433)
T 4hw6_A          273 GSNFHIVWHPTG-DWAYIIYNGKHCIYRVDYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYA  349 (433)
T ss_dssp             SSCEEEEECTTS-SEEEEEETTTTEEEEEEBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGT
T ss_pred             CCcccEEEeCCC-CEEEEEeCCCCEEEEEeCCCCCcccC--cEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccc
Confidence            233579999999 7 445555678899988652  2210  012222210000000 0 00001234677999       


Q ss_pred             --cCCCCEEEEeeC-CeEEEEec
Q 014005          336 --ANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       336 --s~dg~~l~s~~~-~~i~iwd~  355 (432)
                        .++|.+.++-.. ++|+.++.
T Consensus       350 ~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          350 GEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             TSSCCEEEEEEETTTTEEEEECT
T ss_pred             ccCCCCcEEEEECCCCEEEEECC
Confidence              677776666433 88999887

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.29  E-value=0.089  Score=47.12  Aligned_cols=61  Identities=8%  Similarity=0.014  Sum_probs=37.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccc---cccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC---DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                      ....++| .++ .++++.-..+.|...++......   ......+..              ...+.++++.|||.+.++.
T Consensus       269 ap~G~~~-~~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~--------------~~rp~~v~~~pdG~lyv~~  332 (352)
T 2ism_A          269 PPGNLAF-FRG-DLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG--------------FGRLREVQVGPDGALYVTT  332 (352)
T ss_dssp             CEEEEEE-ETT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES--------------SCCEEEEEECTTSCEEEEE
T ss_pred             CCcceEE-ECC-EEEEEECCCCEEEEEEECCCCcceeecchheeccc--------------CCCeeEEEECCCCcEEEEE
Confidence            4567787 456 67666666778888877643310   000111111              3578899999999876663

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.27  E-value=0.088  Score=46.52  Aligned_cols=196  Identities=7%  Similarity=0.074  Sum_probs=111.7

Q ss_pred             CCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC----Ccc--eecceeec--cceEE
Q 014005          126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS----FAH--GYHLEWTE--NMATK  197 (432)
Q Consensus       126 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~--~~~~~~~~--~~~v~  197 (432)
                      ...+++.....+-+.+||+....+..+..                +.+..+..-|.    +..  ++..+.-.  ++++.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~----------------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~  102 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT----------------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIE  102 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTSCEEEEECC----------------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcCCCcEEEEccC----------------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEE
Confidence            34567777778899999995444433321                23333333332    111  22333323  46899


Q ss_pred             EEeecccccceeeEEeec------CCCCCeeEEEe--CCC-CC-EEEEE-cCCeEEEEeCCC------CCceeeEeecCC
Q 014005          198 IANVGNSVHARCQKVYPH------AHDFNINSISN--NSD-CE-TFVSA-DDLRINLWNLEI------SDQCFNIVDMKP  260 (432)
Q Consensus       198 i~d~~~~~~~~~~~~~~~------~~~~~i~~~~~--~~~-~~-~l~~~-~d~~i~lwd~~~------~~~~~~~~~~~~  260 (432)
                      ++++... .. .+..+..      .....+..+++  +|. +. ++.+. .+|.+..|++..      ..+.++.+.   
T Consensus       103 vf~iDp~-~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~---  177 (355)
T 3amr_A          103 IYAIDGK-NG-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK---  177 (355)
T ss_dssp             EEEECTT-TC-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE---
T ss_pred             EEEECCC-CC-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec---
Confidence            9977421 11 2333301      11156777887  774 44 45555 889999998842      123344441   


Q ss_pred             CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc-----cccccccceeec-ccccccCCccceeeeecceeEEE
Q 014005          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-----SALCDHSARILR-DAAESHGSKSFFTEIIASISDIK  334 (432)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~~v~~~~  334 (432)
                           ..+.+-.+..++.. ..|+.+-++..|..+|.+-     +++    +..+. +|            ....+..|+
T Consensus       178 -----lgsq~EgcvvDd~~-g~Lyv~eEd~GIw~~da~p~~~~~~~~----v~~~~~g~------------l~aDvEGLa  235 (355)
T 3amr_A          178 -----MNSQTEGMAADDEY-GRLYIAEEDEAIWKFSAEPDGGSNGTV----IDRADGRH------------LTRDIEGLT  235 (355)
T ss_dssp             -----CSSCEEEEEEETTT-TEEEEEETTTEEEEEECSTTSCSCCEE----EEEBSSSS------------BCSCEEEEE
T ss_pred             -----CCCCcceEEEcCCC-CeEEEecccceEEEEeCCcCCCCCceE----EEEecCCc------------cccCcceEE
Confidence                 12457888999887 7888899987777777541     222    22221 11            124678888


Q ss_pred             E--cCCCC-EEEE-e-eCCeEEEEec----CcceeEeec
Q 014005          335 F--ANDGQ-HLLS-R-DYMNLKVFRY----EPVMTLSFC  364 (432)
Q Consensus       335 ~--s~dg~-~l~s-~-~~~~i~iwd~----~~~~~~~~~  364 (432)
                      +  .++|+ ||++ + .+++..+||.    +.+..|.+-
T Consensus       236 i~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig  274 (355)
T 3amr_A          236 IYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRIT  274 (355)
T ss_dssp             EEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEEC
T ss_pred             EEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEec
Confidence            7  56666 5554 4 3489999999    345555543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.24  E-value=0.1  Score=46.76  Aligned_cols=64  Identities=16%  Similarity=0.205  Sum_probs=39.5

Q ss_pred             cceEEEEEc-------CCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005          268 EVITSAEFH-------PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (432)
Q Consensus       268 ~~v~~~~~~-------p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~  340 (432)
                      .....++|.       .++ .++++.-..+.|...++............+.+             ....+.++++.|||.
T Consensus       259 ~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-------------~~~rp~~v~~~pDG~  324 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRKISTFFKN-------------VFGRLRDVVIDDDGG  324 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEEEEEECTT-------------TSCCEEEEEECTTSC
T ss_pred             cCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccceeeeccC-------------CCCCeeEEEECCCCc
Confidence            357888884       456 77776667778888887743211000111211             025688999999998


Q ss_pred             EEEEe
Q 014005          341 HLLSR  345 (432)
Q Consensus       341 ~l~s~  345 (432)
                      +.++.
T Consensus       325 lyv~~  329 (354)
T 3a9g_A          325 ILIST  329 (354)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76664

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.22  E-value=0.037  Score=53.34  Aligned_cols=79  Identities=14%  Similarity=0.087  Sum_probs=46.2

Q ss_pred             CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccccc
Q 014005          238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH  317 (432)
Q Consensus       238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~  317 (432)
                      +|.|..||+. +++.........   ......     ....+ .+++.++.||.++.||.++|++    +-.++.     
T Consensus       465 ~G~l~A~D~~-tG~~~W~~~~~~---~~~~g~-----~~tag-glvf~g~~dg~l~A~D~~tG~~----lW~~~~-----  525 (582)
T 1flg_A          465 VGSLRAMDPV-SGKVVWEHKEHL---PLWAGV-----LATAG-NLVFTGTGDGYFKAFDAKSGKE----LWKFQT-----  525 (582)
T ss_dssp             SEEEEEECTT-TCCEEEEEEESS---CCCSCC-----EEETT-TEEEEECTTSEEEEEETTTCCE----EEEEEC-----
T ss_pred             cceEEEEECC-CCCEEEEecCCC---CCcccc-----eEeCC-CEEEEECCCCcEEEEECCCCCE----EEEecC-----
Confidence            4678888888 555444331110   111111     11124 5777799999999999999987    444544     


Q ss_pred             CCccceeeeecce--eEEEEcCCCC-EEEE
Q 014005          318 GSKSFFTEIIASI--SDIKFANDGQ-HLLS  344 (432)
Q Consensus       318 ~~~~~~~~~~~~v--~~~~~s~dg~-~l~s  344 (432)
                               ...+  .-+.+..+|+ |+++
T Consensus       526 ---------~~g~~a~P~~y~~~G~qYv~~  546 (582)
T 1flg_A          526 ---------GSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             ---------SSCCCSCCEEEEETTEEEEEE
T ss_pred             ---------CCCcccCceEEEECCEEEEEE
Confidence                     1222  2366777886 5554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.21  E-value=0.072  Score=51.43  Aligned_cols=60  Identities=5%  Similarity=-0.049  Sum_probs=35.1

Q ss_pred             ceEEEEeecccccceeeEEeecCCCC--------CeeEEEeC-CCC---CEEEEE-cCCeEEEEeCCCCCceeeEee
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDF--------NINSISNN-SDC---ETFVSA-DDLRINLWNLEISDQCFNIVD  257 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~--------~i~~~~~~-~~~---~~l~~~-~d~~i~lwd~~~~~~~~~~~~  257 (432)
                      +.+..+|.+   +++.+..+...+..        ...-+... .+|   ..++.+ .+|.++++|.+ +++.+....
T Consensus       278 ~sv~Ald~~---TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~-tG~~lw~~~  350 (599)
T 1w6s_A          278 MTIFGRDAD---TGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRT-DGALVSANK  350 (599)
T ss_dssp             SEEEEEETT---TCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETT-TCCEEEEEE
T ss_pred             ceEEEEeCC---CCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECC-CCCEeeccc
Confidence            367777777   66666665332221        11112222 466   456667 89999999998 566655443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.18  E-value=0.15  Score=47.57  Aligned_cols=174  Identities=8%  Similarity=-0.030  Sum_probs=92.8

Q ss_pred             cccccCCCCCcceecceeeccceEEEEeec-------ccccc-----e----eeEEeecCCCCCeeEEEeCCCCCEEEEE
Q 014005          173 FMNEHNPPSFAHGYHLEWTENMATKIANVG-------NSVHA-----R----CQKVYPHAHDFNINSISNNSDCETFVSA  236 (432)
Q Consensus       173 i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~-------~~~~~-----~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~  236 (432)
                      ...++.+|+...++.... ..+.|..+|+.       .....     .    ....+..........++|+|+++.|..+
T Consensus       249 p~giavdp~~g~LYvtd~-~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYva  327 (496)
T 3kya_A          249 CNGATIHPINGELYFNSY-EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFG  327 (496)
T ss_dssp             CCCEEECTTTCCEEEEET-TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred             ceEEEEcCCCCeEEEEEC-CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEE
Confidence            456677886655554433 16678888886       22110     0    0111223334567899999999976665


Q ss_pred             --cCCeEEEEeCCCCCcee---eEeecCCCCcCC---------CCcceE-EEEEc-------CCCCcEEEEEeCCCeEEE
Q 014005          237 --DDLRINLWNLEISDQCF---NIVDMKPSNMDD---------LTEVIT-SAEFH-------PIYCNLLAYSSSRGFVRL  294 (432)
Q Consensus       237 --~d~~i~lwd~~~~~~~~---~~~~~~~~~~~~---------~~~~v~-~~~~~-------p~~~~~l~~~~~dg~i~i  294 (432)
                        ....|+.++.+.....+   .++--... ..+         .-.... .++..       +++ .++++=....+|+.
T Consensus       328 D~~~h~I~kid~dg~~~~~~~~~~~aG~~g-~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~  405 (496)
T 3kya_A          328 VINNHYFMRSDYDEIKKEFITPYNFVGGYK-QSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRK  405 (496)
T ss_dssp             ETTTTEEEEEEEETTTTEECCCEEEEEBTT-BCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEE
T ss_pred             eCCCCEEEEEecCCCcceecccEEecCCCC-CCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEE
Confidence              67888887765212111   11100000 011         112344 45554       455 66666667789999


Q ss_pred             EEccccccccccceeecccccc-------c-CC-cc--ceeeeecceeEEEEcCC-CCEEEEeeC-CeEEEEec
Q 014005          295 VDMRQSALCDHSARILRDAAES-------H-GS-KS--FFTEIIASISDIKFAND-GQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       295 wd~~~~~~~~~~~~~~~~h~~~-------~-~~-~~--~~~~~~~~v~~~~~s~d-g~~l~s~~~-~~i~iwd~  355 (432)
                      ++ .+|.     +.++.+....       + .. ..  ...........++++++ |.+.++-.. ++|+.+++
T Consensus       406 i~-~~G~-----v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~  473 (496)
T 3kya_A          406 VT-PEGI-----VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISM  473 (496)
T ss_dssp             EC-TTCB-----EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             Ee-CCCC-----EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEEC
Confidence            98 4454     3555441100       0 00 00  00011245678999997 665555433 88998888

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.17  E-value=0.0039  Score=61.65  Aligned_cols=198  Identities=7%  Similarity=-0.040  Sum_probs=106.6

Q ss_pred             cceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccC----cceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          114 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRD----QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                      ..+..++|  ++.+..|+.+ ...+.|..+++.+    .....+....             -.....+++.+.+..++..
T Consensus       406 ~~p~gla~--d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~-------------~~~P~glavD~~~g~LY~t  470 (699)
T 1n7d_A          406 RNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-------------IQAPDGLAVDWIHSNIYWT  470 (699)
T ss_dssp             TTCCCCEE--ETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC-------------C--CCCEECCCSSSBCEEC
T ss_pred             cceEEEcc--ccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC-------------CCCcceEEEEeeCCcEEEE
Confidence            45667888  6666666655 4567888888875    1111111000             0234556776544444332


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cC-CeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d-~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      .. ..+.|.+.++..   . ....+..........++++|.+..|..+  .. +.|..++++  +....++      ...
T Consensus       471 D~-~~~~I~v~d~dg---~-~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d--G~~~~~l------~~~  537 (699)
T 1n7d_A          471 DS-VLGTVSVADTKG---V-KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSL------VTE  537 (699)
T ss_dssp             CT-TTSCEEEEBSSS---C-CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS--SCCCCEE------SCS
T ss_pred             ec-cCCeEEEEecCC---C-ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC--CCCeeEE------EeC
Confidence            21 156788888752   2 2222213334567889999976655554  33 678877776  2222222      012


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                      .-...+.|+|+|++..++++-+..+.|..+|+.....     +.+.....          ......+|++..+ .++++.
T Consensus       538 ~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-----~~~~~~~~----------~~~~P~glavd~~-~lywtd  601 (699)
T 1n7d_A          538 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-----KTILEDEK----------RLAHPFSLAVFED-KVFWTD  601 (699)
T ss_dssp             SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-----EEECCCSS----------SCSSCCCCEEETT-EEEEEC
T ss_pred             CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-----EEEEecCC----------cCCCceEeEEECC-EEEEEe
Confidence            2245678999998735555556778999999874332     22221000          0123345666554 233333


Q ss_pred             -eCCeEEEEec
Q 014005          346 -DYMNLKVFRY  355 (432)
Q Consensus       346 -~~~~i~iwd~  355 (432)
                       ..+.|..+|.
T Consensus       602 ~~~~~V~~~d~  612 (699)
T 1n7d_A          602 IINEAIFSANR  612 (699)
T ss_dssp             STTTCEEEEET
T ss_pred             CCCCeEEEEEc
Confidence             3388888886

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.14  E-value=0.16  Score=49.29  Aligned_cols=204  Identities=11%  Similarity=-0.005  Sum_probs=114.1

Q ss_pred             CCcEEEEEEcCCCCEEEEec-ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchh
Q 014005           32 VDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL  110 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~  110 (432)
                      ......++|++.+..|..+. ..+.|..+++++....                          ...+....         
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~--------------------------~~v~~~~~---------   83 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------------------------QNVVVSGL---------   83 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C--------------------------EEEECSSC---------
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce--------------------------EEEEeCCC---------
Confidence            44578899998666655444 4567888887654210                          01122211         


Q ss_pred             hhhcceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          111 EIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       111 ~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                         .....|++  .+.+..|+.+ ...+.|.+.++.+...+.+.....             .....++++|....++...
T Consensus        84 ---~~P~GlAv--D~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l-------------~~P~~Iavdp~~g~ly~tD  145 (619)
T 3s94_A           84 ---LSPDGLAC--DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL-------------DQPRAIALDPSSGFMYWTD  145 (619)
T ss_dssp             ---SCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-------------SCCCCEEEETTTTEEEEEE
T ss_pred             ---CCcCeEEE--EecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC-------------CCCceEEEecCCCeEEEec
Confidence               45678888  6655555444 567899999998765444332111             3456788877755555444


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      ....+.|...++..    .....+........+.+++++++..|..+  ..+.|...|++ ........       .+..
T Consensus       146 ~g~~~~I~r~~~dG----~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d-G~~~~~~~-------~~~~  213 (619)
T 3s94_A          146 WGEVPKIERAGMDG----SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-GTNRQAVV-------KGSL  213 (619)
T ss_dssp             CSSSCEEEEEETTS----CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS-CCEEC--------------
T ss_pred             cCCCCEEEEEECCC----CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC-CCccEEEE-------eCCC
Confidence            31123444444432    22222213345578899999987777766  57788888887 32222211       1112


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      .....+++..+  .++.+-...+.|...|..+++.
T Consensus       214 ~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          214 PHPFALTLFED--ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             --CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred             CCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence            22346677644  4555555677899999877754

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.12  E-value=0.13  Score=45.49  Aligned_cols=147  Identities=11%  Similarity=0.094  Sum_probs=84.4

Q ss_pred             CCeEEEEEc--cCcceeeeeecCCCCccccccccccccccccccC--CCCCc--ceecceeeccceEEEEeeccc----c
Q 014005          136 DKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN--PPSFA--HGYHLEWTENMATKIANVGNS----V  205 (432)
Q Consensus       136 d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~--~~~~~~~~~~~~v~i~d~~~~----~  205 (432)
                      +++|.+|++  .++.+..+.......       ...-..+..+++  ++...  +++....  ++.+..|++...    .
T Consensus        98 ~n~l~vf~iDp~~~~l~~i~~~~~pv-------~t~~~~pyGlcly~~~~~g~~yafV~~k--~G~~~q~~l~~~~~g~~  168 (355)
T 3amr_A           98 KNTIEIYAIDGKNGTLQSMTDPDHPI-------ATAINEVYGFTLYHSQKTGKYYAMVTGK--EGEFEQYELKADKNGYI  168 (355)
T ss_dssp             CCEEEEEEECTTTCCEEECSCTTSCE-------ECCCSSCCCEEEEECTTTCCEEEEEECS--SSEEEEEEEEECTTSCE
T ss_pred             CCeEEEEEECCCCCceeeccccccCc-------CCCCCCeeEEEEEecCCCCcEEEEEECC--CCeEEEEEEEeCCCCcc
Confidence            589999977  344443332210000       000034555665  55433  4444444  688888888532    3


Q ss_pred             cceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCC----CceeeEeecCCCCcCCCCcceEEEEE--cCC
Q 014005          206 HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS----DQCFNIVDMKPSNMDDLTEVITSAEF--HPI  278 (432)
Q Consensus       206 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~  278 (432)
                      ..+.++.+.  ..+.+..+...+....|..+ .+..|..++.+-.    ...+..+     ........+..+++  .++
T Consensus       169 ~~~lVR~f~--lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~-----~~g~l~aDvEGLai~~~~~  241 (355)
T 3amr_A          169 SGKKVRAFK--MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA-----DGRHLTRDIEGLTIYYAAD  241 (355)
T ss_dssp             EEEEEEEEE--CSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB-----SSSSBCSCEEEEEEEECGG
T ss_pred             cceEEEEec--CCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe-----cCCccccCcceEEEEecCC
Confidence            556677773  34678899999988889988 7766666664411    1222221     11222346788888  455


Q ss_pred             CC-cEEEEEeCCCeEEEEEcc
Q 014005          279 YC-NLLAYSSSRGFVRLVDMR  298 (432)
Q Consensus       279 ~~-~~l~~~~~dg~i~iwd~~  298 (432)
                      +. .+|+++-.++++.+||.+
T Consensus       242 g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          242 GKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             GCEEEEEEEGGGTEEEEEESS
T ss_pred             CCEEEEEEcCCCCEEEEEECC
Confidence            52 344444477899999986

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.03  E-value=0.047  Score=51.02  Aligned_cols=116  Identities=16%  Similarity=0.116  Sum_probs=68.0

Q ss_pred             CeeEEEe-------CCCCCEEEEE-cCC-------eEEEEeCCCCCcee-----eEeecCCCCcCCCCcceEEEEEcCCC
Q 014005          220 NINSISN-------NSDCETFVSA-DDL-------RINLWNLEISDQCF-----NIVDMKPSNMDDLTEVITSAEFHPIY  279 (432)
Q Consensus       220 ~i~~~~~-------~~~~~~l~~~-~d~-------~i~lwd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~p~~  279 (432)
                      ....++|       +++++.|.++ ..+       .+.+++....+...     ..+       .. -.....++++|++
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v-------~~-~~~p~giavdp~~  258 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLI-------AA-YKQCNGATIHPIN  258 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEE-------EE-ESCCCCEEECTTT
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceee-------cc-CCCceEEEEcCCC
Confidence            5778999       9999866666 332       26666544212211     122       11 1234578899965


Q ss_pred             CcEEEEEeCCCeEEEEEcc-------ccccc-----cc--cc-eeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          280 CNLLAYSSSRGFVRLVDMR-------QSALC-----DH--SA-RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       280 ~~~l~~~~~dg~i~iwd~~-------~~~~~-----~~--~~-~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      ..++++-..++.|..+|+.       ++...     ..  .. ..+.. +           ...+...++|+|+|++|..
T Consensus       259 g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~-----------~~~~p~~ia~~p~G~~lYv  326 (496)
T 3kya_A          259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-A-----------DPSWEFQIFIHPTGKYAYF  326 (496)
T ss_dssp             CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-S-----------SSSCCEEEEECTTSSEEEE
T ss_pred             CeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec-C-----------CCCCceEEEEcCCCCEEEE
Confidence            3666667788899999997       44420     00  00 11111 0           0245678999999996555


Q ss_pred             eeC--CeEEEEec
Q 014005          345 RDY--MNLKVFRY  355 (432)
Q Consensus       345 ~~~--~~i~iwd~  355 (432)
                      ++.  ++|+.++.
T Consensus       327 aD~~~h~I~kid~  339 (496)
T 3kya_A          327 GVINNHYFMRSDY  339 (496)
T ss_dssp             EETTTTEEEEEEE
T ss_pred             EeCCCCEEEEEec
Confidence            432  88888776

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.81  E-value=0.14  Score=44.80  Aligned_cols=119  Identities=12%  Similarity=0.053  Sum_probs=73.1

Q ss_pred             eeEEEe---CCCCCEEEEEc--------------CCeEEEEeCC---CCCceeeEeecCCCCcCC-------CCcceEEE
Q 014005          221 INSISN---NSDCETFVSAD--------------DLRINLWNLE---ISDQCFNIVDMKPSNMDD-------LTEVITSA  273 (432)
Q Consensus       221 i~~~~~---~~~~~~l~~~~--------------d~~i~lwd~~---~~~~~~~~~~~~~~~~~~-------~~~~v~~~  273 (432)
                      +..+.+   .|+++++++.+              +..+..+|+.   + ++.+...++.... .+       -......+
T Consensus        65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t-g~~~~~~dL~~~~-~~~~~~~g~~~~~~nDv  142 (334)
T 2p9w_A           65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSEN-SKPVWSVNFEKVQ-DEFEKKAGKRPFGVVQS  142 (334)
T ss_dssp             EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTT-CCCSEEEESHHHH-HHHHHHHSSCCEEEEEE
T ss_pred             eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCC-CCEEEEecCcccc-ccccccccccccCCcee
Confidence            356777   57766666542              5678888877   3 2333333221100 00       12358899


Q ss_pred             EEcCCCCcEEEEEeCC-CeEEEEEccccccccccceeeccc-ccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeE
Q 014005          274 EFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDA-AESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL  350 (432)
Q Consensus       274 ~~~p~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~h-~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i  350 (432)
                      +..++| +..++++.. +.|...+.. |+.    ...+... ++..        .....+.++++|||+.|+... .+.+
T Consensus       143 avD~~G-naYVt~s~~~~~I~rV~pd-G~~----~~~~~~~~~~~~--------~~~G~nGIv~~pdg~~Liv~~~~g~L  208 (334)
T 2p9w_A          143 AQDRDG-NSYVAFALGMPAIARVSAD-GKT----VSTFAWESGNGG--------QRPGYSGITFDPHSNKLIAFGGPRAL  208 (334)
T ss_dssp             EECTTS-CEEEEEEESSCEEEEECTT-SCC----EEEEEECCCCSS--------SCCSCSEEEEETTTTEEEEESSSSSE
T ss_pred             EECCCC-CEEEeCCCCCCeEEEEeCC-CCE----EeeeeecCCCcc--------cccCcceEEEeCCCCEEEEEcCCCeE
Confidence            999999 888888888 888777765 332    2222210 0000        023477999999999888763 5999


Q ss_pred             EEEec
Q 014005          351 KVFRY  355 (432)
Q Consensus       351 ~iwd~  355 (432)
                      .-+|+
T Consensus       209 ~~fD~  213 (334)
T 2p9w_A          209 TAFDV  213 (334)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            99998

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.79  E-value=0.26  Score=43.88  Aligned_cols=111  Identities=11%  Similarity=0.100  Sum_probs=63.8

Q ss_pred             CCeeEEEeCCCCCEEEEEc----C------------CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcE
Q 014005          219 FNINSISNNSDCETFVSAD----D------------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL  282 (432)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~----d------------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  282 (432)
                      ...+.+++.++|.+.++..    |            ..-.+|.++ .++ .+.+       ...-...+.++|+||+ +.
T Consensus       165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d-~~~-~~~~-------~~~l~~pNGia~spDg-~~  234 (355)
T 3sre_A          165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS-PND-VRVV-------AEGFDFANGINISPDG-KY  234 (355)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC-TTC-CEEE-------EEEESSEEEEEECTTS-SE
T ss_pred             CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE-CCe-EEEe-------ecCCcccCcceECCCC-CE
Confidence            4577888888887666542    1            112333333 122 1111       1222346899999999 66


Q ss_pred             EEEE-eCCCeEEEEEccc-cccccccceeecccccccCCccceeeeecceeEEEEcC-CCCEEEEee-C-CeEEEEec
Q 014005          283 LAYS-SSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-Y-MNLKVFRY  355 (432)
Q Consensus       283 l~~~-~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~s~~-~-~~i~iwd~  355 (432)
                      |..+ +..+.|..|++.. ++...  .+.+..              ....-.+++.+ +|.+.+++. + +.|..|+.
T Consensus       235 lYvadt~~~~I~~~~~~~~g~l~~--~~~~~~--------------~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          235 VYIAELLAHKIHVYEKHANWTLTP--LRVLSF--------------DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEE--EEEEEC--------------SSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             EEEEeCCCCeEEEEEECCCCcEec--CEEEeC--------------CCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence            5555 4678999999863 32211  123321              34567899999 598877653 3 45444454

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.78  E-value=0.68  Score=48.44  Aligned_cols=34  Identities=9%  Similarity=0.027  Sum_probs=27.8

Q ss_pred             CCcEEEEEEcCC------CCEEEEecc-cceEEEEEecCCc
Q 014005           32 VDIVSAIEFDKT------GDYLAVGDR-GGRVILFETVGGK   65 (432)
Q Consensus        32 ~~~V~~~~fsp~------g~~l~t~~~-dg~i~iw~~~~~~   65 (432)
                      .+.|.|+++.|.      ++++|.|.. |++++|+++.+.+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~  593 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE  593 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence            568999999864      368999986 9999999997643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.70  E-value=0.31  Score=43.47  Aligned_cols=93  Identities=9%  Similarity=0.171  Sum_probs=56.5

Q ss_pred             CCeEEEEeCCCCCceeeEeecCCCCcC-CCCcceEEEEEcCCCCcEEEEEeC-----------------CCeEEEEEccc
Q 014005          238 DLRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSS-----------------RGFVRLVDMRQ  299 (432)
Q Consensus       238 d~~i~lwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~-----------------dg~i~iwd~~~  299 (432)
                      +.++.+|+++..+.....+.    +.. ..-...+.+.+.++| .+.++...                 .|.|.-+|.  
T Consensus       138 ~s~ielf~~d~~~~~~~~~~----~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--  210 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLK----TIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--  210 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEE----EECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--
T ss_pred             CCeEEEEEEECCCCEEEEEe----ccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--
Confidence            67888888874333332220    111 123457899999998 77766541                 234444443  


Q ss_pred             cccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-C-CeEEEEec
Q 014005          300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKVFRY  355 (432)
Q Consensus       300 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~-~~i~iwd~  355 (432)
                      ++.    .....+              -...+.++|||||+.|..++ . ++|..|++
T Consensus       211 ~~~----~~~~~~--------------l~~pNGia~spDg~~lYvadt~~~~I~~~~~  250 (355)
T 3sre_A          211 NDV----RVVAEG--------------FDFANGINISPDGKYVYIAELLAHKIHVYEK  250 (355)
T ss_dssp             TCC----EEEEEE--------------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             CeE----EEeecC--------------CcccCcceECCCCCEEEEEeCCCCeEEEEEE
Confidence            221    122222              45678999999999887764 3 89999998

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.44  E-value=0.74  Score=44.71  Aligned_cols=194  Identities=5%  Similarity=-0.054  Sum_probs=112.5

Q ss_pred             cceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          114 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      .....|+|  ++.+..++.+ ..++.|..+++.+...+.+.....             .....+++++.+..++.... .
T Consensus        37 ~~~~~l~~--d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~-------------~~P~GlAvD~~~~~LY~tD~-~  100 (628)
T 4a0p_A           37 KEASALDF--DVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL-------------DYPEGMAVDWLGKNLYWADT-G  100 (628)
T ss_dssp             SCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-------------SCCCEEEEETTTTEEEEEET-T
T ss_pred             CceEEEEE--ECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC-------------CCcceEEEEeCCCEEEEEEC-C
Confidence            45778999  6655555544 567889999987655443332211             23455666655444443321 1


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--c-CCeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~-d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                      .+.|.+.++...    ..+.+..........+++.|....|..+  . .+.|...+++  +.....+       ...-..
T Consensus       101 ~~~I~v~~~dG~----~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--G~~~~~l-------~~~~~~  167 (628)
T 4a0p_A          101 TNRIEVSKLDGQ----HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD--GSERTTL-------VPNVGR  167 (628)
T ss_dssp             TTEEEEEETTST----TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEE-------ECSCSS
T ss_pred             CCEEEEEecCCC----cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--CCceEEE-------ECCCCC
Confidence            567777777632    1222213445568899999865566555  2 5678888887  3323322       123356


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-eCC
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYM  348 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~  348 (432)
                      .+.+++++++.++..+=...+.|..+|+.....     +.+...             .....++++.. +....+- ..+
T Consensus       168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-----~v~~~~-------------l~~P~glav~~-~~ly~tD~~~~  228 (628)
T 4a0p_A          168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-----EVIADD-------------LPHPFGLTQYQ-DYIYWTDWSRR  228 (628)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEEEC-------------CSCEEEEEEET-TEEEEEETTTT
T ss_pred             cceEEEccccCEEEEEECCCCEEEEEcCCCCce-----EEeecc-------------CCCceEEEEEC-CEEEEecCCCC
Confidence            789999998724444445667899999875432     233221             23345677765 3333343 237


Q ss_pred             eEEEEec
Q 014005          349 NLKVFRY  355 (432)
Q Consensus       349 ~i~iwd~  355 (432)
                      .|...|.
T Consensus       229 ~I~~~dk  235 (628)
T 4a0p_A          229 SIERANK  235 (628)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            8888875

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.24  E-value=0.95  Score=43.88  Aligned_cols=157  Identities=13%  Similarity=0.066  Sum_probs=89.6

Q ss_pred             CcEEEEEEcCCCCEEE-EecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           33 DIVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ..+.+++|++.+..|. +-...+.|+.+++++....                           ..+...-          
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~---------------------------~v~~~~~----------  391 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQ---------------------------FVVTAQI----------  391 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------------------------EEECSSC----------
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccE---------------------------EEEECCC----------
Confidence            4567888888555444 4344667877777653211                           1111111          


Q ss_pred             hhcceeEEEEEEcCCCC-EEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          112 IEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                        .....+++  ...+. ++.+-+..+.|.+.++.+.....+.....             .....+++.|....++....
T Consensus       392 --~~p~GlAv--D~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l-------------~~P~~iavdp~~G~ly~tD~  454 (619)
T 3s94_A          392 --AHPDGIAV--DWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDL-------------EEPRAIVLDPMVGYMYWTDW  454 (619)
T ss_dssp             --SCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTC-------------CSEEEEEEETTTTEEEEEEC
T ss_pred             --CCcCceEE--ecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCC-------------CCeeeEEEEcCCCcEEEecC
Confidence              45667888  55444 44454567889999987654333322111             34567777776444444332


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCC
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLE  247 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~  247 (432)
                      .....|...+++.    .....+....-...+.+++++++..|..+  ..+.|...+++
T Consensus       455 g~~~~I~r~~~dG----~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~d  509 (619)
T 3s94_A          455 GEIPKIERAALDG----SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTD  509 (619)
T ss_dssp             SSSCEEEEEETTS----CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESS
T ss_pred             CCCCEEEEEccCC----CccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecC
Confidence            1123444444432    22222213445678899999877777776  56788888887

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.19  E-value=0.64  Score=41.48  Aligned_cols=73  Identities=16%  Similarity=0.197  Sum_probs=43.2

Q ss_pred             cceEEEEEcC-------CCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005          268 EVITSAEFHP-------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (432)
Q Consensus       268 ~~v~~~~~~p-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~  340 (432)
                      ..+..+.|..       ++ .++++.-..+.|...++..++.... ...+..             ....+.++++.|||.
T Consensus       271 ~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~~~~~-~~~~~~-------------~~~rp~~v~~~pdG~  335 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDKVTED-GRILTD-------------RGQRIRDVRTGPDGY  335 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEEE-EEESGG-------------GCCCEEEEEECTTSC
T ss_pred             cCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCeEeee-EEcccC-------------CCCceeEEEECCCCc
Confidence            3577788864       45 6777666778888888775432100 111111             134788999999998


Q ss_pred             EEEEeeCCeEEEEec
Q 014005          341 HLLSRDYMNLKVFRY  355 (432)
Q Consensus       341 ~l~s~~~~~i~iwd~  355 (432)
                      +.++.+...=+||.+
T Consensus       336 lyv~td~~~g~I~ri  350 (353)
T 2g8s_A          336 LYVLTDESSGELLKV  350 (353)
T ss_dssp             EEEEECSTTEEEEEE
T ss_pred             EEEEEeCCCCEEEEE
Confidence            766543222244443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.03  E-value=0.84  Score=41.39  Aligned_cols=156  Identities=13%  Similarity=0.086  Sum_probs=93.2

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeeccc
Q 014005          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS  204 (432)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~  204 (432)
                      .+|..++.+- ++.||.-++..+...+......+-         .-..+..+..+|+|.+++..+   +..|.|-.+...
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i---------~f~~i~qlvlSpsG~lLAl~g---~~~V~Vv~LP~~   96 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHL---------VLDDTFHVISSTSGDLLCLFN---DNEIFVMEVPWG   96 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTC---------CCCTTCEEEECTTSSEEEEEC---SSEEEEEECCTT
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCCcceEEecCccc---------ccCceeEEEECCCCCEEEEec---CCeEEEEEecCc
Confidence            4666666664 478888887743322222222100         013577789999999998876   456777766521


Q ss_pred             c---c--c----eeeEEeecC-----CCCCeeEEEeCCC---CCEEEEE-cCCeEEEEeCCCCC-ceeeEeecCCC--Cc
Q 014005          205 V---H--A----RCQKVYPHA-----HDFNINSISNNSD---CETFVSA-DDLRINLWNLEISD-QCFNIVDMKPS--NM  263 (432)
Q Consensus       205 ~---~--~----~~~~~~~~~-----~~~~i~~~~~~~~---~~~l~~~-~d~~i~lwd~~~~~-~~~~~~~~~~~--~~  263 (432)
                      .   .  .    -..+.+.-+     ....|..+.|+|-   +..|++- .|+.|++||+.... .+. .++.+..  ..
T Consensus        97 ~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~  175 (452)
T 3pbp_A           97 YSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGL  175 (452)
T ss_dssp             CSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEES
T ss_pred             cccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCC
Confidence            1   0  0    112333222     3567999999995   4567777 99999999998422 222 3321111  11


Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEe--CCCeEEEE
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLV  295 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~iw  295 (432)
                      ......|.+++|.+++ -.|...+  ..|.|+-.
T Consensus       176 d~~~~ev~S~~Fg~~~-lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          176 DARVNDITDLEFSKDG-LTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CSSCCCEEEEEECTTS-SCEEEEECTTSCEEEEE
T ss_pred             CcccceEEEEEEcCCC-cEEEEEecCCCCCEEEE
Confidence            2333678999999977 6666655  77877544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.44  E-value=0.86  Score=37.24  Aligned_cols=69  Identities=6%  Similarity=-0.117  Sum_probs=37.4

Q ss_pred             CCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeE
Q 014005          219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV  292 (432)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i  292 (432)
                      ..+..+.+.|+|.+.++. |+.++-.... .+....-+.....--...-...+.+.|.|++ .+.++.  +|.+
T Consensus       135 ~~~~~lff~p~G~Lyav~-dg~lyr~~~P-~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G-~l~~v~--~g~~  203 (236)
T 1tl2_A          135 SGFKFLFFHPNGYLYAVH-GQQFYKALPP-VSNQDNWLARATKIGQGGWDTFKFLFFSSVG-TLFGVQ--GGKF  203 (236)
T ss_dssp             GGEEEEEECTTSCEEEEE-TTEEEEECCC-SSTTCCHHHHCEEEESSSGGGEEEEEECTTS-CEEEEE--TTEE
T ss_pred             CceEEEEECCCceEEEEe-CCcEEecCCC-CCCCcccccccceeccCCcceEEEEEECCCC-cEEEEe--CCeE
Confidence            467899999999888888 8875433222 1110000000000001233345667799998 766655  6643

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.42  E-value=1.5  Score=39.89  Aligned_cols=204  Identities=12%  Similarity=0.198  Sum_probs=121.5

Q ss_pred             EEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeE
Q 014005           39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR  118 (432)
Q Consensus        39 ~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~  118 (432)
                      -.+|..+.||.=. ..++.|+|++++.                              .++.|..          ...|.-
T Consensus        72 IMnP~~~iiALra-g~~lQiFnle~K~------------------------------klks~~~----------~e~Vvf  110 (494)
T 1bpo_A           72 IMNPASKVIALKA-GKTLQIFNIEMKS------------------------------KMKAHTM----------TDDVTF  110 (494)
T ss_dssp             EECSSSSCEEEEE-TTEEEEEETTTTE------------------------------EEEEEEC----------SSCCCE
T ss_pred             eeCCCCcEEEEec-CCeEEEEchHHhh------------------------------hhcceec----------CCCceE
Confidence            3566677666644 5678888887764                              3344431          156777


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec-----c
Q 014005          119 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-----N  193 (432)
Q Consensus       119 l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~  193 (432)
                      -.|. +  .+.|+..+ +..|+-|++.+.. ....-+..+.       ...+..|..-..+++.++++..+...     .
T Consensus       111 WkWi-s--~~~l~lVT-~taVyHWsi~~~s-~P~kvFdR~~-------~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~  178 (494)
T 1bpo_A          111 WKWI-S--LNTVALVT-DNAVYHWSMEGES-QPVKMFDRHS-------SLAGCQIINYRTDAKQKWLLLTGISAQQNRVV  178 (494)
T ss_dssp             EEEE-E--TTEEEEEC-SSEEEEEESSSSC-CCEEEEECCG-------GGTTCEEEEEEECTTSSEEEEEEEEEETTEEE
T ss_pred             EEec-C--CCeEEEEc-CCeeEEecccCCC-Cchhheecch-------hcccceEEEEEECCCCCeEEEEeecccCCccc
Confidence            7884 2  34555554 4679999997532 1222222222       12246677777789999887666532     5


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC---CCEEEEE-c---CCeEEEEeCCCC--C-ce--eeEeecCCC
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-D---DLRINLWNLEIS--D-QC--FNIVDMKPS  261 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~-~---d~~i~lwd~~~~--~-~~--~~~~~~~~~  261 (432)
                      |.+.+|..+.    +..+.+ .+|-.....+.+..+   ...++.+ .   .+.+++-++...  + ..  .+..++.-.
T Consensus       179 G~mQLYS~er----~~sQ~i-eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fp  253 (494)
T 1bpo_A          179 GAMQLYSVDR----KVSQPI-EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP  253 (494)
T ss_dssp             EEEEEEESTT----CCEEEE-CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCC
T ss_pred             ceEEEeeccc----cccchh-eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCC
Confidence            6888888862    233444 677655544444322   1234444 3   378999988632  1 11  111111110


Q ss_pred             CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       262 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                       -+...+-.-++..++.. .++..-+.-|.|.+||+.++..
T Consensus       254 -pe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt~  292 (494)
T 1bpo_A          254 -PEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTC  292 (494)
T ss_dssp             -TTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCE
T ss_pred             -cccccCceeEEEecccC-CEEEEEecCceEEEEeccccee
Confidence             02233456688889887 7888899999999999999874

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.20  E-value=1.4  Score=39.23  Aligned_cols=30  Identities=7%  Similarity=0.353  Sum_probs=22.1

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR  145 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~  145 (432)
                      .....|+|  .|+|+.++++...|.|++++..
T Consensus        18 ~~P~~i~~--~pdG~~l~V~e~~G~i~~~~~~   47 (353)
T 2g8s_A           18 DHPWALAF--LPDNHGMLITLRGGELRHWQAG   47 (353)
T ss_dssp             SSEEEEEE--CSTTCCEEEEETTTEEEEEETT
T ss_pred             CCcEEEEE--cCCCCEEEEEeCCceEEEEeCC
Confidence            45678999  8899834555667899888753

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.85  E-value=1.7  Score=37.42  Aligned_cols=150  Identities=8%  Similarity=-0.009  Sum_probs=74.1

Q ss_pred             CCCEEEEEeCC-----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec---cceEE
Q 014005          126 NGSMFILSTND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE---NMATK  197 (432)
Q Consensus       126 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~v~  197 (432)
                      ++..++.|+.+     ..+.+||+.+.+...+.......           ..-..+  ..++...+.|+...   ...+.
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----------~~~~~~--~~~~~iyv~GG~~~~~~~~~~~  178 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAR-----------EGAGLV--VASGVIYCLGGYDGLNILNSVE  178 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC-----------BSCEEE--EETTEEEEECCBCSSCBCCCEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCc-----------ccceEE--EECCEEEEECCCCCCcccceEE
Confidence            56677777643     46889999888876665433211           111111  12344444444321   24677


Q ss_pred             EEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC-----CeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005          198 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (432)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (432)
                      .||+... ....+..+ ........++.+  ++.+++.| .+     ..+.+||++ +.. ...+...    ........
T Consensus       179 ~~d~~~~-~W~~~~~~-p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~-~~~-W~~~~~~----p~~r~~~~  248 (301)
T 2vpj_A          179 KYDPHTG-HWTNVTPM-ATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIR-TDS-WTTVTSM----TTPRCYVG  248 (301)
T ss_dssp             EEETTTT-EEEEECCC-SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT-TTE-EEEECCC----SSCCBSCE
T ss_pred             EEeCCCC-cEEeCCCC-CcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCC-CCc-EEECCCC----CCccccee
Confidence            8887643 22222222 111111122222  56666666 43     468899998 333 2222111    11111112


Q ss_pred             EEEEcCCCCcEEEEEeCC-----CeEEEEEccccc
Q 014005          272 SAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSA  301 (432)
Q Consensus       272 ~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~  301 (432)
                      .+.+  ++ ++++.|+.+     ..+.+||+.+.+
T Consensus       249 ~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          249 ATVL--RG-RLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             EEEE--TT-EEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             EEEE--CC-EEEEEcCcCCCcccccEEEEcCCCCe
Confidence            2222  55 778888765     357888887644

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.64  E-value=1.9  Score=37.06  Aligned_cols=150  Identities=5%  Similarity=-0.032  Sum_probs=74.9

Q ss_pred             CCCEEEEEeCC-----CeEEEEEccCcc---eeeeeecCCCCccccccccccccccccccCCCCCcceecceeec---cc
Q 014005          126 NGSMFILSTND-----KTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE---NM  194 (432)
Q Consensus       126 ~~~~l~s~~~d-----~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~  194 (432)
                      ++..++.|+.+     ..+.+||+.+.+   ...+..+....           .....+.  .++...+.|+...   ..
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r-----------~~~~~~~--~~~~lyv~GG~~~~~~~~  128 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRR-----------GLAGATT--LGDMIYVSGGFDGSRRHT  128 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCC-----------BSCEEEE--ETTEEEEECCBCSSCBCC
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCc-----------cceeEEE--ECCEEEEEcccCCCcccc
Confidence            56677777654     468899998877   66654332211           1111111  1344444444322   23


Q ss_pred             eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC-----CeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      .+.+||+... +...+..+ ......-.++.+  +++.++.| .+     ..+..||+. +.. ...+...+.    ...
T Consensus       129 ~~~~~d~~~~-~W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~-~~~-W~~~~~~p~----~r~  198 (301)
T 2vpj_A          129 SMERYDPNID-QWSMLGDM-QTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPH-TGH-WTNVTPMAT----KRS  198 (301)
T ss_dssp             EEEEEETTTT-EEEEEEEC-SSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETT-TTE-EEEECCCSS----CCB
T ss_pred             eEEEEcCCCC-eEEECCCC-CCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCC-CCc-EEeCCCCCc----ccc
Confidence            6778887643 22333333 111111122222  56666666 43     458888987 333 222211111    111


Q ss_pred             ceEEEEEcCCCCcEEEEEeCC-----CeEEEEEccccc
Q 014005          269 VITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSA  301 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~  301 (432)
                      ....+.+  ++ ++++.|+.+     ..+.+||+.+.+
T Consensus       199 ~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          199 GAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             SCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             cceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCCCc
Confidence            1122222  45 778888764     468999998754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.55  E-value=2.1  Score=37.00  Aligned_cols=150  Identities=7%  Similarity=-0.009  Sum_probs=74.3

Q ss_pred             CCCEEEEEeCC------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec-------
Q 014005          126 NGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-------  192 (432)
Q Consensus       126 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------  192 (432)
                      ++..++.|+.+      ..+.+||..+.+...+..+....           ..-. +. ..++...+.|+...       
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----------~~~~-~~-~~~~~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR-----------CSHG-MV-EANGLIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC-----------BSCE-EE-EETTEEEEECCEESCTTTCEE
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc-----------ceeE-EE-EECCEEEEECCCCCCCCcccc
Confidence            56677777655      46889999988776654432211           0111 11 12344444444322       


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC-----CeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      ...+.+||+... ....+..+ ......- +++.. ++++++.| .+     ..+.+||+. ++. ...+.  +  +...
T Consensus       168 ~~~~~~yd~~~~-~W~~~~~~-p~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~-~~~-W~~~~--~--~p~~  237 (306)
T 3ii7_A          168 LNSCEVYDPATE-TWTELCPM-IEARKNH-GLVFV-KDKIFAVGGQNGLGGLDNVEYYDIK-LNE-WKMVS--P--MPWK  237 (306)
T ss_dssp             CCCEEEEETTTT-EEEEECCC-SSCCBSC-EEEEE-TTEEEEECCEETTEEBCCEEEEETT-TTE-EEECC--C--CSCC
T ss_pred             cceEEEeCCCCC-eEEECCCc-cchhhcc-eEEEE-CCEEEEEeCCCCCCCCceEEEeeCC-CCc-EEECC--C--CCCC
Confidence            235777887643 22222222 1111111 22222 56666666 32     467889988 332 22221  1  1111


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCC-----CeEEEEEccccc
Q 014005          267 TEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSA  301 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~  301 (432)
                      ......+.+  ++ ++++.|+.+     ..+.+||+.+.+
T Consensus       238 r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          238 GVTVKCAAV--GS-IVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             BSCCEEEEE--TT-EEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             ccceeEEEE--CC-EEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            112223333  45 788888854     468888887654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.45  E-value=2.5  Score=37.60  Aligned_cols=110  Identities=15%  Similarity=0.092  Sum_probs=59.0

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC---Ccceeccee
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS---FAHGYHLEW  190 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~  190 (432)
                      .....|+|  .|+|+ |+++..+|.|.+++. .++ ..+......        .........++++|+   ...++....
T Consensus        29 ~~P~~ia~--~pdG~-l~V~e~~g~I~~~d~-~G~-~~~~~~~v~--------~~g~~g~~gia~~pdf~~~g~lyv~~~   95 (354)
T 3a9g_A           29 EVPWSIAP--LGGGR-YLVTERPGRLVLISP-SGK-KLVASFDVA--------NVGEAGLLGLALHPEFPKKSWVYLYAS   95 (354)
T ss_dssp             SCEEEEEE--EETTE-EEEEETTTEEEEECS-SCE-EEEEECCCC--------CSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCCeEEEE--cCCCe-EEEEeCCCEEEEEeC-CCc-eEeecccee--------ecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence            45678999  67886 555566799999873 444 333322100        001245678889887   444444433


Q ss_pred             e--cc----ceEEEEeecccc--c--cee-eEEeecCCCCCeeEEEeCCCCCEEEEE
Q 014005          191 T--EN----MATKIANVGNSV--H--ARC-QKVYPHAHDFNINSISNNSDCETFVSA  236 (432)
Q Consensus       191 ~--~~----~~v~i~d~~~~~--~--~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~  236 (432)
                      .  .+    ..|..++.....  .  .+. +..+..........++|.|+|.++++.
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A           96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence            1  12    456666654320  0  111 111211222235679999999866653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.42  E-value=1.7  Score=38.50  Aligned_cols=118  Identities=12%  Similarity=0.067  Sum_probs=65.1

Q ss_pred             CCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCC---CCcEEEEEe--CC
Q 014005          216 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSS--SR  289 (432)
Q Consensus       216 ~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~--~d  289 (432)
                      ..-.....|+|.|+|+++++- ..|.|++++.+ .+....... .+............++++|+   +..+.++-+  .+
T Consensus        29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~-~g~~~~v~~-~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAK-TGRKTELGE-VPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEE-CTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             cCCCCceEEEEcCCCcEEEEEecCCEEEEEECC-CCcEeeecc-cCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            344578899999999988887 59999999865 333221111 11111233456899999996   314444322  44


Q ss_pred             CeEEEEEccccc----cccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          290 GFVRLVDMRQSA----LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       290 g~i~iwd~~~~~----~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      +.|.-|.+..+.    ........+..-+   .      .....-..+.|.|||.+.++
T Consensus       107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p---~------~~~H~g~~l~fgpDG~Lyvt  156 (347)
T 3das_A          107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIP---K------GVIHNGGRIAFGPDKMLYAG  156 (347)
T ss_dssp             EEEEEEEBCTTSCTTCCBCCCEEEEEEEC---C------CSSCCCCCEEECTTSCEEEE
T ss_pred             CEEEEEEeCCCCcccccCCCcEEEEEcCC---C------CCCccCccccCCCCCCEEEE
Confidence            556666554321    1001111121100   0      00124567999999987776

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.18  E-value=6.4  Score=41.22  Aligned_cols=145  Identities=9%  Similarity=0.039  Sum_probs=84.6

Q ss_pred             Ccceecceee--------ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCcee
Q 014005          182 FAHGYHLEWT--------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCF  253 (432)
Q Consensus       182 ~~~~~~~~~~--------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~  253 (432)
                      ..+++.|+..        ..|.+.++++.   ..+.........++.+++++-- +| +|++|...++++|++. .++.+
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~---~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~-~~~~L  917 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYS---DGKLQTVAEKEVKGAVYSMVEF-NG-KLLASINSTVRLYEWT-TEKEL  917 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEE---TTEEEEEEEEEESSCEEEEEEE-TT-EEEEEETTEEEEEEEC-TTSCE
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEE---CCEEEEEEEEEcCCcCEEEeee-CC-EEEEEcCCEEEEEECC-CCceE
Confidence            4566666532        25789999987   2333333334557788888744 34 6777877899999998 33333


Q ss_pred             eEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEE
Q 014005          254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI  333 (432)
Q Consensus       254 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~  333 (432)
                      + .+.     .... .|..+.....+ ++++.|..-..|.+...+....   .+..+..+.           ...+++++
T Consensus       918 ~-~~~-----~~~~-~i~~~~l~~~~-~~I~vgD~~~Sv~~~~y~~~~~---~L~~~a~D~-----------~~~~vta~  975 (1158)
T 3ei3_A          918 R-TEC-----NHYN-NIMALYLKTKG-DFILVGDLMRSVLLLAYKPMEG---NFEEIARDF-----------NPNWMSAV  975 (1158)
T ss_dssp             E-EEE-----EECC-CSCEEEEEEET-TEEEEEESSBCEEEEEEETTTT---EEEEEEECC-----------SCBCEEEE
T ss_pred             E-EEe-----eccc-cEEEEEEeccC-CEEEEEEhhheEEEEEEEcCCC---eEEEEEeec-----------ccccEEEE
Confidence            3 100     1111 12222333345 7888888777777765442211   023332210           13578888


Q ss_pred             EEcCCCCEEEEeeC-CeEEEEec
Q 014005          334 KFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       334 ~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                      .|-.++ .++.++. |.+.+...
T Consensus       976 ~~ld~~-t~l~aD~~gNl~vl~~  997 (1158)
T 3ei3_A          976 EILDDD-NFLGAENAFNLFVCQK  997 (1158)
T ss_dssp             EEEETT-EEEEEETTSEEEEEEE
T ss_pred             EEEccC-cEEEEcCCCcEEEEec
Confidence            887666 4444555 99999987

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.16  E-value=2.5  Score=36.40  Aligned_cols=150  Identities=7%  Similarity=-0.003  Sum_probs=73.6

Q ss_pred             CCCEEEEEeCCC-----eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec-----cce
Q 014005          126 NGSMFILSTNDK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-----NMA  195 (432)
Q Consensus       126 ~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~  195 (432)
                      ++..++.|+.++     .+.+||+.+.+...+..+....           ... .+. ..++...+.|+...     ...
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----------~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~  174 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRR-----------SSV-GVG-VVGGLLYAVGGYDVASRQCLST  174 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCC-----------BSC-EEE-EETTEEEEECCEETTTTEECCC
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcc-----------cCc-eEE-EECCEEEEEeCCCCCCCccccE
Confidence            566777776553     5788898888776654432211           111 111 12344444444422     235


Q ss_pred             EEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC-----CeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       196 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                      +..||+... ....+..+ .........+.+  ++.+++.| .+     ..+.+||.+ ++. ...+...+.    ....
T Consensus       175 ~~~yd~~~~-~W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~-~~~-W~~~~~~~~----~r~~  244 (302)
T 2xn4_A          175 VECYNATTN-EWTYIAEM-STRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPT-TNA-WRQVADMNM----CRRN  244 (302)
T ss_dssp             EEEEETTTT-EEEEECCC-SSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETT-TTE-EEEECCCSS----CCBS
T ss_pred             EEEEeCCCC-cEEECCCC-ccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCC-CCC-EeeCCCCCC----cccc
Confidence            777887633 22222222 111111122222  56677776 43     468889988 333 222211111    1111


Q ss_pred             eEEEEEcCCCCcEEEEEeCCC-----eEEEEEccccc
Q 014005          270 ITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSA  301 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg-----~i~iwd~~~~~  301 (432)
                      ...+.+  ++ ++++.|+.++     .+.+||+.+.+
T Consensus       245 ~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          245 AGVCAV--NG-LLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             CEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CeEEEE--CC-EEEEECCcCCCcccccEEEEcCCCCe
Confidence            112222  45 7888887654     48899988654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.78  E-value=3  Score=36.07  Aligned_cols=150  Identities=7%  Similarity=0.020  Sum_probs=72.3

Q ss_pred             CCCEEEEEeCC-----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec---cceEE
Q 014005          126 NGSMFILSTND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE---NMATK  197 (432)
Q Consensus       126 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~v~  197 (432)
                      ++..++.|+.+     ..+.+||+.+.+...+..+....           ..-..+.  .++...+.|+...   ...+.
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-----------~~~~~~~--~~~~iyv~GG~~~~~~~~~~~  187 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR-----------IGVGVAV--LNRLLYAVGGFDGTNRLNSAE  187 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC-----------BSCEEEE--ETTEEEEECCBCSSCBCCCEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccc-----------cceEEEE--ECCEEEEEeCCCCCCcCceEE
Confidence            56667776533     46888999888766654332111           1111111  1344444444322   24577


Q ss_pred             EEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC-----CeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005          198 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (432)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (432)
                      .||+... ....+..+ ........++.+  ++.+++.| .+     ..+.+||++ +.. ...+.  +  +........
T Consensus       188 ~yd~~~~-~W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~-~~~-W~~~~--~--~p~~r~~~~  257 (308)
T 1zgk_A          188 CYYPERN-EWRMITAM-NTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVE-TET-WTFVA--P--MKHRRSALG  257 (308)
T ss_dssp             EEETTTT-EEEECCCC-SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT-TTE-EEECC--C--CSSCCBSCE
T ss_pred             EEeCCCC-eEeeCCCC-CCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCC-CCc-EEECC--C--CCCCccceE
Confidence            7887633 22222212 111111222222  56666766 43     568889988 333 22221  1  111111112


Q ss_pred             EEEEcCCCCcEEEEEeCC-----CeEEEEEccccc
Q 014005          272 SAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSA  301 (432)
Q Consensus       272 ~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~  301 (432)
                      .+.+  ++ ++++.|+.+     ..+.+||+.+.+
T Consensus       258 ~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          258 ITVH--QG-RIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             EEEE--TT-EEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             EEEE--CC-EEEEEcCcCCCcccceEEEEcCCCCE
Confidence            2222  45 788888754     357888887654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=93.72  E-value=3.5  Score=36.59  Aligned_cols=110  Identities=13%  Similarity=0.131  Sum_probs=59.6

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC---Ccceeccee
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS---FAHGYHLEW  190 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~  190 (432)
                      ..-..++|  .|+|+++ ++..+|.|.+++  .++...+......        .........++++|+   +..++....
T Consensus        31 ~~P~~ia~--~pdG~l~-V~e~~g~I~~i~--~g~~~~~~~~~v~--------~~g~~~p~gia~~pdf~~~g~lYv~~~   97 (352)
T 2ism_A           31 EVPWALAF--LPDGGML-IAERPGRIRLFR--EGRLSTYAELSVY--------HRGESGLLGLALHPRFPQEPYVYAYRT   97 (352)
T ss_dssp             SCEEEEEE--CTTSCEE-EEETTTEEEEEE--TTEEEEEEECCCC--------CSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCceEEEE--cCCCeEE-EEeCCCeEEEEE--CCCccEeecceEe--------ecCCCCceeEEECCCCCCCCEEEEEEe
Confidence            45678999  8999854 555679999998  4443333222100        001245678889988   445544433


Q ss_pred             ec-c---ceEEEEeecccccce---eeEEee--cCCCCCeeEEEeCCCCCEEEEE
Q 014005          191 TE-N---MATKIANVGNSVHAR---CQKVYP--HAHDFNINSISNNSDCETFVSA  236 (432)
Q Consensus       191 ~~-~---~~v~i~d~~~~~~~~---~~~~~~--~~~~~~i~~~~~~~~~~~l~~~  236 (432)
                      .. +   +.|..++........   .+..+.  .........++|.|+|.++++.
T Consensus        98 ~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A           98 VAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             ECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             cCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            11 1   566666665321111   111121  1112234689999999766653

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.60  E-value=3.3  Score=35.87  Aligned_cols=172  Identities=12%  Similarity=0.043  Sum_probs=91.0

Q ss_pred             cCCCCEEEEEeCC--------------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          124 APNGSMFILSTND--------------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       124 s~~~~~l~s~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                      ++++.+|.-+...              ..|+..++.+++...+...                  ....+++++.+++-..
T Consensus        61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~------------------~~~~~s~~g~~Iy~~~  122 (302)
T 3s25_A           61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD------------------PCIYASLIGNYIYYLH  122 (302)
T ss_dssp             EECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS------------------CEEEEEEETTEEEEEE
T ss_pred             EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC------------------CccEEEEeCCEEEEEe
Confidence            5678887777543              3567777776654443221                  1124556666666544


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      ...++.-.||.+...  +...+.+ ..+..    .+++++++.|.-.  ...+|..-+++ .+....++       .+  
T Consensus       123 ~~~~~~~~Iy~~~~d--Gs~~~~l-t~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~-g~~~~~l~-------~~--  185 (302)
T 3s25_A          123 YDTQTATSLYRIRID--GEEKKKI-KNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTA-SQSEALFY-------DC--  185 (302)
T ss_dssp             ESSSSCEEEEEEETT--SCCCEEE-ESSCC----CCSEEETTEEEEECTTTCCEEEEETT-TTEEEEEE-------CS--
T ss_pred             ecCCCCceEEEEECC--CCCeEEE-eCCCc----eEeeEECCEEEEEeCCCceEEEEECC-CCCEEEEe-------CC--
Confidence            111333344444332  2222333 22222    4567788888866  36778888877 33333322       22  


Q ss_pred             cceEEEEEcCCCCcEEEEEeCC--CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005          268 EVITSAEFHPIYCNLLAYSSSR--GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                       .. ...++|++ ..|+-...+  ..|..-++..+..     ..+..               ..+  ..|+|+|++|.-+
T Consensus       186 -~~-~~~~~P~g-~~iy~t~~~~~~~I~~~~ldG~~~-----~~Lt~---------------~~~--~~~~~~g~~Iy~~  240 (302)
T 3s25_A          186 -NC-YKPVVLDD-TNVYYMDVNRDNAIVHVNINNPNP-----VVLTE---------------ANI--EHYNVYGSLIFYQ  240 (302)
T ss_dssp             -CE-EEEEEEET-TEEEEEEGGGTTEEEEECSSSCCC-----EECSC---------------SCE--EEEEEETTEEEEE
T ss_pred             -Cc-cceeeecC-CEEEEEEcCCCcEEEEEECCCCCe-----EEEeC---------------CCc--ceEEECCCEEEEE
Confidence             11 12466888 666666543  3566666665442     44443               223  3478888888765


Q ss_pred             eC---CeEEEEec
Q 014005          346 DY---MNLKVFRY  355 (432)
Q Consensus       346 ~~---~~i~iwd~  355 (432)
                      ++   +.|..-++
T Consensus       241 ~~~~~~~i~~~~~  253 (302)
T 3s25_A          241 RGGDNPALCVVKN  253 (302)
T ss_dssp             ECSSSCEEEEEET
T ss_pred             ECCCCcEEEEEEC
Confidence            32   45555555

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.49  E-value=0.41  Score=39.10  Aligned_cols=112  Identities=13%  Similarity=-0.008  Sum_probs=63.7

Q ss_pred             CCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCc--CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 014005          219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM--DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (432)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd  296 (432)
                      ..+..++|+|+|.+.++ .+|.++-.+.. +.....-+.. ...+  .+... ...+.|+|+| .+.++  .||.|.-++
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~-t~~~~~W~~s-~t~IG~~Gw~~-F~a~~fD~~G-~LYav--~dG~iyr~~  113 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPP-THDNDNWMGR-AKKIGNGGWNQ-FQFLFFDPNG-YLYAV--SKDKLYKAS  113 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCC-CSTTCCHHHH-CEEEECSCGGG-CSEEEECTTS-CEEEE--ETTEEEEES
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCC-CCCccccccc-ccEeccccccc-ceEEEECCCC-CEEEe--CCCEEEEeC
Confidence            47779999999987777 78876665554 2111100000 0000  01111 4789999999 66665  669988777


Q ss_pred             ccccccccccc---eeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCeEE
Q 014005          297 MRQSALCDHSA---RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK  351 (432)
Q Consensus       297 ~~~~~~~~~~~---~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~  351 (432)
                      -.+... ...+   ..+..+            .=..+..+.|.|+|.+-+.. ++.++
T Consensus       114 pP~~~~-~~Wl~~a~~vg~~------------gw~~~~~lff~p~G~Lyav~-dg~ly  157 (236)
T 1tl2_A          114 PPQSDT-DNWIARATEVGSG------------GWSGFKFLFFHPNGYLYAVH-GQQFY  157 (236)
T ss_dssp             CCCSTT-CCHHHHSEEEECS------------SGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred             CCcCCC-CceeccccEeccC------------CCCceEEEEECCCceEEEEe-CCcEE
Confidence            543221 0000   000000            01467899999999988877 77643

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.46  E-value=3.8  Score=36.22  Aligned_cols=247  Identities=11%  Similarity=0.075  Sum_probs=120.8

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeee----eecCCcccccc
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE----FQSHEPEFDYL  107 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~h~~~~~~~  107 (432)
                      -+.-+.|+|.|+|.++++-...|.|++++.++++..                         .+..    +....      
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-------------------------~v~~~~~v~~~g~------   79 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-------------------------ELGEVPGVSPSGE------   79 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-------------------------EEEECTTCCCBTT------
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-------------------------eecccCceeecCC------
Confidence            346789999999998877655889988875544310                         0111    11112      


Q ss_pred             chhhhhcceeEEEEEEcCC----CCEEEEE--eCCCeEEEEEccCc-----c---eeeee-ecCCCCccccccccccccc
Q 014005          108 KSLEIEEKINRVRWCAAPN----GSMFILS--TNDKTIKLWKVRDQ-----K---VKKIK-EMDHFPFVSSENTLLAEKN  172 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~----~~~l~s~--~~d~~i~iwd~~~~-----~---~~~~~-~~~~~~~~~~~~~~~~~~~  172 (432)
                            .....|++  +|+    +.+.++-  ..++.|.-|.+..+     .   .+.+. .+..          .....
T Consensus        80 ------~GllGia~--~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~----------~~~H~  141 (347)
T 3das_A           80 ------GGLLGIAL--SPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK----------GVIHN  141 (347)
T ss_dssp             ------BSEEEEEE--CTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC----------CSSCC
T ss_pred             ------CCceeeEe--ccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC----------CCCcc
Confidence                  66789999  774    4333332  23456666666542     1   11111 1110          01123


Q ss_pred             cccccCCCCCcceecceeec---------cceEEEEeeccccc---ce---eeEEeecCCCCCeeEEEeCCCCCEEEEE-
Q 014005          173 FMNEHNPPSFAHGYHLEWTE---------NMATKIANVGNSVH---AR---CQKVYPHAHDFNINSISNNSDCETFVSA-  236 (432)
Q Consensus       173 i~~~~~~~~~~~~~~~~~~~---------~~~v~i~d~~~~~~---~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~-  236 (432)
                      -..+.|.+++.+.++.+...         ...=+|+.+.....   ..   ....+..+|. ....++|+|+|.+.++- 
T Consensus       142 g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~  220 (347)
T 3das_A          142 GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEF  220 (347)
T ss_dssp             CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEEC
T ss_pred             CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEec
Confidence            45688899887655533200         01122333322111   00   0122323443 46689999988766653 


Q ss_pred             -cCCeEEEEeCCCCCcee----eEee------cCCC-CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccc
Q 014005          237 -DDLRINLWNLEISDQCF----NIVD------MKPS-NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD  304 (432)
Q Consensus       237 -~d~~i~lwd~~~~~~~~----~~~~------~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~  304 (432)
                       .|+.-.|--+. .+...    ..-.      ..|. .+..+......++|.. + .++...-..+.|....+.......
T Consensus       221 g~~~~deln~i~-~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~~~  297 (347)
T 3das_A          221 GQDTWDELNAIK-PGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTAAAA  297 (347)
T ss_dssp             CSSSCEEEEEEC-TTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTEESS
T ss_pred             CCCCCceeeEEc-CCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCceec
Confidence             33322332222 11110    0000      0000 0011223566777773 4 666666566666666665433211


Q ss_pred             ccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       305 ~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      .....+.+             ....+.+++..|||.++++
T Consensus       298 ~~e~~l~~-------------~~gR~~dv~~~pDG~lyv~  324 (347)
T 3das_A          298 DPQAFLEG-------------EYGRLRTVAPAGGDKLWLV  324 (347)
T ss_dssp             CCEEESTT-------------TSSCEEEEEEEETTEEEEE
T ss_pred             ceEEeecC-------------CCCCccEEEECCCCcEEEE
Confidence            11122222             1367899999999976665

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.27  E-value=3  Score=38.56  Aligned_cols=117  Identities=11%  Similarity=0.057  Sum_probs=61.9

Q ss_pred             CCCeeEEEeCCCCCEEEEEc-CCeEEEEeCCCCCceeeEeecCCCCc-CCCCcceEEEEEcCC---CCcEEEEEeC----
Q 014005          218 DFNINSISNNSDCETFVSAD-DLRINLWNLEISDQCFNIVDMKPSNM-DDLTEVITSAEFHPI---YCNLLAYSSS----  288 (432)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~~-d~~i~lwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~---~~~~l~~~~~----  288 (432)
                      -.....|+|.|+|+++++-. .+.|++++.. .+.......+..... .........++|+|+   +..+.++-+.    
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~-~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECC-CCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            34677999999999888774 4578888765 333222221111100 112456789999995   4144444332    


Q ss_pred             --------CCeEEEEEcccccc-ccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          289 --------RGFVRLVDMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       289 --------dg~i~iwd~~~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                              ...|.-++...+.. .......+..-+   .      ........|+|.|||.+.++
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p---~------~~~H~~~~l~f~pDG~Lyv~  160 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP---S------SKDHQSGRLVIGPDQKIYYT  160 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC---C------CSSCCEEEEEECTTSCEEEE
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC---C------CCCCCCCeEeECCCCeEEEE
Confidence                    23455555542210 000011121100   0      00135688999999987776

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.11  E-value=5.4  Score=36.88  Aligned_cols=116  Identities=11%  Similarity=0.131  Sum_probs=61.2

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC---Ccceeccee
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS---FAHGYHLEW  190 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~  190 (432)
                      .....|+|  .|+|+++++-...+.|.+++..++....+..+....     ......+....++++|+   ...++....
T Consensus        27 ~~P~~~a~--~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~-----~~~~g~~Gllgia~~Pdf~~~g~lYv~~s   99 (454)
T 1cru_A           27 NKPHALLW--GPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIV-----NDADGQNGLLGFAFHPDFKNNPYIYISGT   99 (454)
T ss_dssp             SSEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC-----CCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCceEEEE--cCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccc-----cccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence            45679999  889986666544457888876655544433322100     00011356678999986   444544433


Q ss_pred             ec-----------cceEEEEeecccc----cce-eeEEeecCCCCCeeEEEeCCCCCEEEEE
Q 014005          191 TE-----------NMATKIANVGNSV----HAR-CQKVYPHAHDFNINSISNNSDCETFVSA  236 (432)
Q Consensus       191 ~~-----------~~~v~i~d~~~~~----~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~  236 (432)
                      ..           ...|.-++.....    ..+ .+..+..........|+|.|+|.+.++.
T Consensus       100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~  161 (454)
T 1cru_A          100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI  161 (454)
T ss_dssp             EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred             ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE
Confidence            10           1234444433210    111 1112212223357899999999877654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.93  E-value=4.2  Score=35.13  Aligned_cols=150  Identities=5%  Similarity=-0.039  Sum_probs=72.8

Q ss_pred             CCCEEEEEeC----C-----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec---c
Q 014005          126 NGSMFILSTN----D-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE---N  193 (432)
Q Consensus       126 ~~~~l~s~~~----d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~  193 (432)
                      ++..++.|+.    +     +.+.+||+.+.+...+..+....           .....+.  .++...+.|+...   .
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----------~~~~~~~--~~~~iyv~GG~~~~~~~  136 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPR-----------NRIGVGV--IDGHIYAVGGSHGCIHH  136 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCC-----------BTCEEEE--ETTEEEEECCEETTEEC
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCc-----------cccEEEE--ECCEEEEEcCCCCCccc
Confidence            5666677665    2     46888999888766654332211           1111111  1344445444322   2


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC-----CeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      ..+.+||.... ....+..+ ......-.++.+  ++.+++.| .+     ..+.+||+. +.. ...+...    ....
T Consensus       137 ~~~~~yd~~~~-~W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~-~~~-W~~~~~~----p~~r  206 (308)
T 1zgk_A          137 NSVERYEPERD-EWHLVAPM-LTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPE-RNE-WRMITAM----NTIR  206 (308)
T ss_dssp             CCEEEEETTTT-EEEECCCC-SSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETT-TTE-EEECCCC----SSCC
T ss_pred             ccEEEECCCCC-eEeECCCC-CccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCC-CCe-EeeCCCC----CCcc
Confidence            35777887632 22222112 111111122222  56666666 43     458888887 332 2222111    1111


Q ss_pred             cceEEEEEcCCCCcEEEEEeCC-----CeEEEEEccccc
Q 014005          268 EVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSA  301 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~  301 (432)
                      ..-..+.+  ++ ++++.|+.+     ..+.+||+.+.+
T Consensus       207 ~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          207 SGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             BSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCCCc
Confidence            11222333  45 788888765     468999988754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=92.55  E-value=3.9  Score=36.20  Aligned_cols=19  Identities=16%  Similarity=0.031  Sum_probs=14.5

Q ss_pred             CeEEEEEccCcceeeeeec
Q 014005          137 KTIKLWKVRDQKVKKIKEM  155 (432)
Q Consensus       137 ~~i~iwd~~~~~~~~~~~~  155 (432)
                      +.+.+||..+.+...+..+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~  186 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGES  186 (357)
T ss_dssp             CEEEEEETTTTEEEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCC
Confidence            5799999998887766543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.53  E-value=6.3  Score=41.80  Aligned_cols=170  Identities=13%  Similarity=0.204  Sum_probs=95.2

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec-
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-  192 (432)
                      ..|.--.|.   +.+.|+..+ +..|..|++.+.. .+..-+..+.       ...+..|..-..+++.++++..+... 
T Consensus       106 e~VvfWkWi---s~~~l~lVT-~~aVyHW~~~~~s-~P~k~fdR~~-------~L~~~QIinY~~d~~~kW~~l~gi~~~  173 (1630)
T 1xi4_A          106 DDVTFWKWI---SLNTVALVT-DNAVYHWSMEGES-QPVKMFDRHS-------SLAGCQIINYRTDAKQKWLLLTGISAQ  173 (1630)
T ss_pred             CCceEEEec---CCCeeEEEc-CCeEEEeccCCCC-ccHHHHhcch-------hcccCeeEEeeeCCCCCeEEEEeeccC
Confidence            667777783   233455444 3579999996522 2222222221       11235677777788888887665532 


Q ss_pred             ----cceEEEEeecccccceeeEEeecCCCCCeeEEEeC--CC-CCEEEEE-c---CCeEEEEeCCCC--C-cee--eEe
Q 014005          193 ----NMATKIANVGNSVHARCQKVYPHAHDFNINSISNN--SD-CETFVSA-D---DLRINLWNLEIS--D-QCF--NIV  256 (432)
Q Consensus       193 ----~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~~~l~~~-~---d~~i~lwd~~~~--~-~~~--~~~  256 (432)
                          .|.+.+|..+..    ..+.+ .||-.....+...  +. ...++.+ .   .+.+++-++...  + ..+  +..
T Consensus       174 ~~~v~G~mQLyS~er~----~sQ~i-egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~  248 (1630)
T 1xi4_A          174 QNRVVGAMQLYSVDRK----VSQPI-EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV  248 (1630)
T ss_pred             CCcccceeeeeecccc----cchhh-hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccc
Confidence                578888887632    22223 4555544443332  11 2244444 2   378888888632  1 111  111


Q ss_pred             ecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      ++.- .-.....-..++..++.. .++..-+.-|.|.++|+.++..
T Consensus       249 ~~~~-~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~  292 (1630)
T 1xi4_A          249 DVFF-PPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTC  292 (1630)
T ss_pred             cccC-CcccccCcceEEEecccc-CEEEEEecCceEEEEecccchh
Confidence            1000 001123344577788877 7888889999999999999874

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.21  E-value=2.9  Score=39.39  Aligned_cols=79  Identities=15%  Similarity=0.095  Sum_probs=53.2

Q ss_pred             CCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceee--EeecCCC----CcCCCCcceEEEEEcCCCCcEEEEEeCCC
Q 014005          219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN--IVDMKPS----NMDDLTEVITSAEFHPIYCNLLAYSSSRG  290 (432)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~--~~~~~~~----~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  290 (432)
                      .....+.++|||++++++  -+.++.++|++.-...+.  ++  ++.    .-....-.....+|+++| +...+--.|.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~--~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidS  399 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLA--DPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDS  399 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCS--CGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTT
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcccc--CcccceEeeccCCCcccEEEECCCC-ceEeeeeecc
Confidence            355678899999998876  699999999982111000  00  000    001123456789999998 7666777999


Q ss_pred             eEEEEEcccc
Q 014005          291 FVRLVDMRQS  300 (432)
Q Consensus       291 ~i~iwd~~~~  300 (432)
                      .|.-|++...
T Consensus       400 qvvkWni~~a  409 (638)
T 3sbq_A          400 QVVKWNMEEA  409 (638)
T ss_dssp             EEEEEEHHHH
T ss_pred             eEEEEeccHH
Confidence            9999999853

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=91.79  E-value=5.8  Score=34.11  Aligned_cols=150  Identities=5%  Similarity=-0.033  Sum_probs=73.7

Q ss_pred             CCCEEEEEeCC----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee-c---cceEE
Q 014005          126 NGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT-E---NMATK  197 (432)
Q Consensus       126 ~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~---~~~v~  197 (432)
                      ++..++.|+.+    ..+.+||+.+++...+..+....           .....+  ..++...+.|+.. .   ...+.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----------~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~  121 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR-----------DSLAAC--AAEGKIYTSGGSEVGNSALYLFE  121 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC-----------BSCEEE--EETTEEEEECCBBTTBSCCCCEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc-----------cceeEE--EECCEEEEECCCCCCCcEeeeEE
Confidence            56677777654    67889999988876664433211           111111  1244455555442 1   24677


Q ss_pred             EEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c---------CCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          198 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~---------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      +||.... ....+..+ ......-.++.  -++++++.| .         -..+.+||.. +.. ...+...    ....
T Consensus       122 ~~d~~~~-~W~~~~~~-p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~-~~~-W~~~~~~----p~~r  191 (306)
T 3ii7_A          122 CYDTRTE-SWHTKPSM-LTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPA-TET-WTELCPM----IEAR  191 (306)
T ss_dssp             EEETTTT-EEEEECCC-SSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETT-TTE-EEEECCC----SSCC
T ss_pred             EEeCCCC-ceEeCCCC-cCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCC-CCe-EEECCCc----cchh
Confidence            8887643 22222222 11111111222  255666665 3         2447888988 333 2222111    1111


Q ss_pred             cceEEEEEcCCCCcEEEEEeCC-----CeEEEEEccccc
Q 014005          268 EVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSA  301 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~  301 (432)
                      ..-..+.+  ++ ++++.|+.+     ..+.+||+.+.+
T Consensus       192 ~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          192 KNHGLVFV--KD-KIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             BSCEEEEE--TT-EEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             hcceEEEE--CC-EEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            11122222  45 777777654     358899988754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.33  E-value=12  Score=36.82  Aligned_cols=156  Identities=10%  Similarity=0.054  Sum_probs=78.3

Q ss_pred             CCCEEEEEeCC------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEE
Q 014005          126 NGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIA  199 (432)
Q Consensus       126 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~  199 (432)
                      ++..++.|+.+      +.+.+||..+..+..+..+....           ..- .+....++...+.|+....+.+.+|
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R-----------~~h-~~~~~~~~~iyv~GG~~~~~~v~~y  518 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR-----------FRH-SACSLPDGNVLILGGVTEGPAMLLY  518 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC-----------BSC-EEEECTTSCEEEECCBCSSCSEEEE
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc-----------ccc-eEEEEcCCEEEEECCCCCCCCEEEE
Confidence            67777777643      35788999888766654332111           111 1111125556666665333378888


Q ss_pred             eecccccceeeEE---eecCCCCCeeEEEeCCC-CCEEEEE-c--C-----CeEEEEeCCCCCce-----eeEeecCCCC
Q 014005          200 NVGNSVHARCQKV---YPHAHDFNINSISNNSD-CETFVSA-D--D-----LRINLWNLEISDQC-----FNIVDMKPSN  262 (432)
Q Consensus       200 d~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~-~~~l~~~-~--d-----~~i~lwd~~~~~~~-----~~~~~~~~~~  262 (432)
                      |.... ....+..   . ......-.++.+..+ +..++.| .  +     +.+..||+. ++.-     ...+...+. 
T Consensus       519 d~~t~-~W~~~~~~g~~-p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~-~~~w~~~~~W~~~~~~p~-  594 (695)
T 2zwa_A          519 NVTEE-IFKDVTPKDEF-FQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYD-AENATEPITVIKKLQHPL-  594 (695)
T ss_dssp             ETTTT-EEEECCCSSGG-GGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEEC-TTCSSCCEEEEEEEECGG-
T ss_pred             ECCCC-ceEEccCCCCC-CCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEcc-CCccccceEEEEcCCCCC-
Confidence            87743 2222211   1 111222233555554 6666666 4  2     358889988 3331     111110000 


Q ss_pred             cCCCCcceEEEEEcCCCCcEEEEEeCC--------CeEEEEEccccc
Q 014005          263 MDDLTEVITSAEFHPIYCNLLAYSSSR--------GFVRLVDMRQSA  301 (432)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~iwd~~~~~  301 (432)
                       ... ... ++....++ ++++.|+.+        ..+.+||+.+.+
T Consensus       595 -~~R-~~~-~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          595 -FQR-YGS-QIKYITPR-KLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             -GCC-BSC-EEEEEETT-EEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             -CCc-ccc-eEEEeCCC-EEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence             111 111 22333335 778888743        468999998755

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=91.18  E-value=6.6  Score=33.64  Aligned_cols=150  Identities=8%  Similarity=0.034  Sum_probs=72.8

Q ss_pred             CCCEEEEEeCC-----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec---cceEE
Q 014005          126 NGSMFILSTND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE---NMATK  197 (432)
Q Consensus       126 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~v~  197 (432)
                      ++..++.|+.+     ..+.+||..+.+...+..+....           .....+.  .++...+.|+...   -..+.
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----------~~~~~~~--~~~~iyv~GG~~~~~~~~~~~  127 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRR-----------STLGAAV--LNGLLYAVGGFDGSTGLSSVE  127 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCC-----------BSCEEEE--ETTEEEEEEEECSSCEEEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccc-----------cceEEEE--ECCEEEEEcCCCCCccCceEE
Confidence            56677777654     45889999888776665433211           1111111  2344445554422   13566


Q ss_pred             EEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC-------CeEEEEeCCCCCceeeEeecCCCCcCCCCcc
Q 014005          198 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-------LRINLWNLEISDQCFNIVDMKPSNMDDLTEV  269 (432)
Q Consensus       198 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d-------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~  269 (432)
                      +||+... ....+..+ ....... +++. -+++.++.| .+       ..+.+||+. ++. ...+...+.....    
T Consensus       128 ~~d~~~~-~W~~~~~~-p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~-~~~-W~~~~~~p~~r~~----  197 (302)
T 2xn4_A          128 AYNIKSN-EWFHVAPM-NTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNAT-TNE-WTYIAEMSTRRSG----  197 (302)
T ss_dssp             EEETTTT-EEEEECCC-SSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETT-TTE-EEEECCCSSCCBS----
T ss_pred             EEeCCCC-eEeecCCC-CCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCC-CCc-EEECCCCcccccc----
Confidence            7777632 22222222 1111111 2222 255666665 32       347888887 333 2222111111111    


Q ss_pred             eEEEEEcCCCCcEEEEEeCC-----CeEEEEEccccc
Q 014005          270 ITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSA  301 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~  301 (432)
                      ...+.+  ++ ++++.|+.+     ..+.+||+.+.+
T Consensus       198 ~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          198 AGVGVL--NN-LLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             CEEEEE--TT-EEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             ccEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCC
Confidence            122222  45 788888764     368899988754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=90.19  E-value=7  Score=36.17  Aligned_cols=60  Identities=13%  Similarity=0.034  Sum_probs=35.8

Q ss_pred             CCeeEEEeCCCCC--EEEEEcCCeEEEEeCCCCCceeeEeecCCCCcC----CCCcceEEEEEcCC
Q 014005          219 FNINSISNNSDCE--TFVSADDLRINLWNLEISDQCFNIVDMKPSNMD----DLTEVITSAEFHPI  278 (432)
Q Consensus       219 ~~i~~~~~~~~~~--~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~p~  278 (432)
                      .....|+|.|++.  ++++-..|.|++++.+.......+.++......    ........|+|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            4677999999985  555558899999976511111111111111111    12456889999996

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=88.42  E-value=11  Score=32.37  Aligned_cols=29  Identities=7%  Similarity=0.161  Sum_probs=19.6

Q ss_pred             CCCEEEEEeCC--------CeEEEEEccCcceeeeee
Q 014005          126 NGSMFILSTND--------KTIKLWKVRDQKVKKIKE  154 (432)
Q Consensus       126 ~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~  154 (432)
                      ++..++.|+.+        ..+.+||..+.+...+..
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~  134 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP  134 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC
Confidence            56666776632        468899998887665543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=86.16  E-value=8.7  Score=33.78  Aligned_cols=113  Identities=7%  Similarity=-0.022  Sum_probs=56.1

Q ss_pred             CEEEEEeCCCeEEEEEccCcceeeeeecCC-CCccccccccccccccccccCCCCCcceecc-eeeccceEEEEeecccc
Q 014005          128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDH-FPFVSSENTLLAEKNFMNEHNPPSFAHGYHL-EWTENMATKIANVGNSV  205 (432)
Q Consensus       128 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~v~i~d~~~~~  205 (432)
                      ..++.++.||.|.-.|..+|+..-...... .+.+          ....-....++..++.. ..  +|.+..++..   
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~----------~~~~~~~~~~~~~~vv~p~~--dG~l~a~~~~---   75 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLI----------EIQEPSRLETYETLIIEPFG--DGNIYYFNAH---   75 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSE----------ECCCSCTTTSSEEEEECCST--TTEEEEEETT---
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcE----------EecCCccccCCcEEEEEECC--CCEEEEEECC---
Confidence            467888889999988988887443332220 0100          00000000111222111 23  7888888876   


Q ss_pred             cceeeEEeecC---CCCCeeE---EEe-----CCCCCEEEEE-cCCeEEEEeCCCCCceeeEe
Q 014005          206 HARCQKVYPHA---HDFNINS---ISN-----NSDCETFVSA-DDLRINLWNLEISDQCFNIV  256 (432)
Q Consensus       206 ~~~~~~~~~~~---~~~~i~~---~~~-----~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~  256 (432)
                      .+.....+...   ...++..   ..+     ...+..+.+| .++++...|++ +++.+..+
T Consensus        76 ~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~-tG~~~W~~  137 (339)
T 2be1_A           76 QGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINML-NGEIISAF  137 (339)
T ss_dssp             TEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETT-TCCEEEEE
T ss_pred             CCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECC-CCcEEEEE
Confidence            33222222110   1111111   000     0134466677 99999999999 77777766

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=85.44  E-value=17  Score=31.27  Aligned_cols=152  Identities=5%  Similarity=-0.051  Sum_probs=72.7

Q ss_pred             cCCCCEEEEEeC----C-------CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee-
Q 014005          124 APNGSMFILSTN----D-------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT-  191 (432)
Q Consensus       124 s~~~~~l~s~~~----d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-  191 (432)
                      ..++..++.|+.    +       ..+..||..+++...+..+....           ... .+.. .++...+.|+.. 
T Consensus        43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----------~~~-~~~~-~~~~lyv~GG~~~  109 (315)
T 4asc_A           43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR-----------CLF-GLGE-ALNSIYVVGGREI  109 (315)
T ss_dssp             CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE-----------ESC-EEEE-ETTEEEEECCEES
T ss_pred             EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch-----------hce-eEEE-ECCEEEEEeCCcC
Confidence            356777777773    1       13778888888766554332111           011 1111 133444444432 


Q ss_pred             -----ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-C-----CeEEEEeCCCCCceeeEeecC
Q 014005          192 -----ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-D-----LRINLWNLEISDQCFNIVDMK  259 (432)
Q Consensus       192 -----~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d-----~~i~lwd~~~~~~~~~~~~~~  259 (432)
                           ....+.+||.... ..+.+..+ ......- +++. .+++.++.| . +     ..+.+||.. +.. ...+.  
T Consensus       110 ~~~~~~~~~~~~~d~~~~-~W~~~~~~-p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~-~~~-W~~~~--  181 (315)
T 4asc_A          110 KDGERCLDSVMCYDRLSF-KWGESDPL-PYVVYGH-TVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPK-KFE-WKELA--  181 (315)
T ss_dssp             STTCCBCCCEEEEETTTT-EEEECCCC-SSCCBSC-EEEE-ETTEEEEECCBCTTSCBCCCEEEEETT-TTE-EEECC--
T ss_pred             CCCCcccceEEEECCCCC-cEeECCCC-CCcccce-eEEE-ECCEEEEEeCCCCCCcccceEEEEeCC-CCe-EEECC--
Confidence                 1346778887633 22222222 1111111 2222 355666666 4 2     468888888 332 22221  


Q ss_pred             CCCcCCCCcceEEEEEcCCCCcEEEEEeCCC-----eEEEEEccccc
Q 014005          260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSA  301 (432)
Q Consensus       260 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----~i~iwd~~~~~  301 (432)
                      +  +......-..+.+  ++ ++++.|+.++     .+.+||+.+.+
T Consensus       182 ~--~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          182 P--MQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             C--CSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             C--CCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCCCe
Confidence            1  1111111122222  45 7888887654     58888988654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=84.95  E-value=18  Score=31.15  Aligned_cols=29  Identities=10%  Similarity=0.361  Sum_probs=19.9

Q ss_pred             CCCEEEEEeCC-------CeEEEEEccCcceeeeee
Q 014005          126 NGSMFILSTND-------KTIKLWKVRDQKVKKIKE  154 (432)
Q Consensus       126 ~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~  154 (432)
                      ++..++.|+.+       ..+.+||..+.+...+..
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~  144 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN  144 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC
Confidence            56677777653       357888988887766543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=84.06  E-value=20  Score=38.24  Aligned_cols=191  Identities=7%  Similarity=0.110  Sum_probs=102.7

Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCC-cceecceeeccceEEEEeec
Q 014005          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYHLEWTENMATKIANVG  202 (432)
Q Consensus       124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~v~i~d~~  202 (432)
                      +|..+.++.-. ..++.++|+++..  ++..+...            ..|.--.|-... --+++     +..|..|++.
T Consensus        74 nP~~~iiALra-g~~lQiFnl~~k~--klks~~~~------------e~VvfWkWis~~~l~lVT-----~~aVyHW~~~  133 (1630)
T 1xi4_A           74 NPASKVIALKA-GKTLQIFNIEMKS--KMKAHTMT------------DDVTFWKWISLNTVALVT-----DNAVYHWSME  133 (1630)
T ss_pred             CCCcceEEEec-CCeEEEeehHHhh--hhcccccC------------CCceEEEecCCCeeEEEc-----CCeEEEeccC
Confidence            56666666654 6889999998776  33333332            233333332222 22222     6689999996


Q ss_pred             ccccceeeEEeecCC----CCCeeEEEeCCCCCEEE-EE-c------CCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          203 NSVHARCQKVYPHAH----DFNINSISNNSDCETFV-SA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       203 ~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~-~~-~------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                      .  ...+.+.| ..|    ...|..-..+++.++++ +| .      .|.+.+|..+  ....+.       +.||.+..
T Consensus       134 ~--~s~P~k~f-dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e--r~~sQ~-------iegha~~F  201 (1630)
T 1xi4_A          134 G--ESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQP-------IEGHAASF  201 (1630)
T ss_pred             C--CCccHHHH-hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc--cccchh-------hhHhHhhh
Confidence            5  44555555 333    45677778889999877 33 2      4778888887  222222       26776655


Q ss_pred             EEEEEc--CCCCcEEEEEeC---CCeEEEEEccccccccccceeeccc----ccccCCccceeeeecceeEEEEcCCCCE
Q 014005          271 TSAEFH--PIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDA----AESHGSKSFFTEIIASISDIKFANDGQH  341 (432)
Q Consensus       271 ~~~~~~--p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~h----~~~~~~~~~~~~~~~~v~~~~~s~dg~~  341 (432)
                      ..+...  +..+++++.+..   .+.++|.++......   ...|...    ...|..      ...-.-++..|+.-..
T Consensus       202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~---~~~f~kk~~~~~~~~~~------~~Dfpv~~~vs~k~g~  272 (1630)
T 1xi4_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG---NQPFPKKAVDVFFPPEA------QNDFPVAMQISEKHDV  272 (1630)
T ss_pred             heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccC---CCCCccccccccCCccc------ccCcceEEEeccccCE
Confidence            444443  222134443332   268888888542000   0111110    001100      0122336677776444


Q ss_pred             EEEe-eCCeEEEEec
Q 014005          342 LLSR-DYMNLKVFRY  355 (432)
Q Consensus       342 l~s~-~~~~i~iwd~  355 (432)
                      +..- ..|.+.++|+
T Consensus       273 iy~itk~G~~~~~d~  287 (1630)
T 1xi4_A          273 VFLITKYGYIHLYDL  287 (1630)
T ss_pred             EEEEecCceEEEEec
Confidence            4443 3399999999

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=82.61  E-value=29  Score=31.74  Aligned_cols=192  Identities=7%  Similarity=0.082  Sum_probs=110.0

Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC-CcceecceeeccceEEEEeec
Q 014005          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS-FAHGYHLEWTENMATKIANVG  202 (432)
Q Consensus       124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~v~i~d~~  202 (432)
                      +|..+.++.-. ..++.++|+++..  ++..+....            .|.--.|-.. .--+++     +..|..|++.
T Consensus        74 nP~~~iiALra-g~~lQiFnle~K~--klks~~~~e------------~VvfWkWis~~~l~lVT-----~taVyHWsi~  133 (494)
T 1bpo_A           74 NPASKVIALKA-GKTLQIFNIEMKS--KMKAHTMTD------------DVTFWKWISLNTVALVT-----DNAVYHWSME  133 (494)
T ss_dssp             CSSSSCEEEEE-TTEEEEEETTTTE--EEEEEECSS------------CCCEEEEEETTEEEEEC-----SSEEEEEESS
T ss_pred             CCCCcEEEEec-CCeEEEEchHHhh--hhcceecCC------------CceEEEecCCCeEEEEc-----CCeeEEeccc
Confidence            67777777665 6899999999877  333333222            3322223221 111222     6789999987


Q ss_pred             ccccceeeEEeecCC----CCCeeEEEeCCCCCEEE-EE-c------CCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          203 NSVHARCQKVYPHAH----DFNINSISNNSDCETFV-SA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       203 ~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~-~~-~------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                      .  ...+.+.| ..|    ...|..-..+++.++++ +| .      .|.+.+|..+  ....+.+       ++|.+..
T Consensus       134 ~--~s~P~kvF-dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e--r~~sQ~i-------eGhaa~F  201 (494)
T 1bpo_A          134 G--ESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPI-------EGHAASF  201 (494)
T ss_dssp             S--SCCCEEEE-ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST--TCCEEEE-------CCSEEEE
T ss_pred             C--CCCchhhe-ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc--ccccchh-------eeeeeee
Confidence            5  45677777 333    35677778899999877 33 2      4678899998  3333443       8887766


Q ss_pred             EEEEEcCC--CCcEEEEEeCC---CeEEEEEcccc---ccccccceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005          271 TSAEFHPI--YCNLLAYSSSR---GFVRLVDMRQS---ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (432)
Q Consensus       271 ~~~~~~p~--~~~~l~~~~~d---g~i~iwd~~~~---~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  342 (432)
                      -.+.+.-+  ..++|+.+...   ++++|.++...   ..... .+...- ...|...      .+-.-++..|+.-..+
T Consensus       202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~-kk~vdv-~fppe~~------~DFPvamqvs~kygvi  273 (494)
T 1bpo_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP-KKAVDV-FFPPEAQ------NDFPVAMQISEKHDVV  273 (494)
T ss_dssp             EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC-CEEEEC-CCCTTST------TCCEEEEEEETTTTEE
T ss_pred             EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc-ceeeee-eCCcccc------cCceeEEEecccCCEE
Confidence            55555321  11455555443   78899888532   11000 111111 1111111      1233467778765555


Q ss_pred             EEeeC-CeEEEEec
Q 014005          343 LSRDY-MNLKVFRY  355 (432)
Q Consensus       343 ~s~~~-~~i~iwd~  355 (432)
                      ..-+. |.+.+||+
T Consensus       274 yviTK~G~i~lyDl  287 (494)
T 1bpo_A          274 FLITKYGYIHLYDL  287 (494)
T ss_dssp             EEEETTSEEEEEET
T ss_pred             EEEecCceEEEEec
Confidence            55444 99999999

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=82.43  E-value=25  Score=30.86  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=17.5

Q ss_pred             CEEEEecccceEEEEEecCCcC
Q 014005           45 DYLAVGDRGGRVILFETVGGKN   66 (432)
Q Consensus        45 ~~l~t~~~dg~i~iw~~~~~~~   66 (432)
                      .+++.++.||.|.-+|.++++.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~   32 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHI   32 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcE
Confidence            4677888899999888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	432
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 29/303 (9%), Positives = 66/303 (21%), Gaps = 48/303 (15%)

Query: 32  VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEY 91
           V+ +S   ++K    +A+      V ++E  G K                          
Sbjct: 7   VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ----------------------- 43

Query: 92  RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK 151
               E + H              ++  V W   P+ +  +    D+   +W ++ +  K 
Sbjct: 44  --VHELKEHN------------GQVTGVDWA--PDSNRIVTCGTDRNAYVWTLKGRTWKP 87

Query: 152 IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQK 211
              +      +             +                          +        
Sbjct: 88  TLVILRINRAARCVR----WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST 143

Query: 212 VYPHAHDFNINSISNNSDCET--FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269
           V       N   ++  S        SA    +                            
Sbjct: 144 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 203

Query: 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329
           +    F     + +A+ S    V L D  +      +            +    + ++A+
Sbjct: 204 VHGVCFSA-NGSRVAWVSHDSTVCLADADKK--MAVATLASETLPLLAVTFITESSLVAA 260

Query: 330 ISD 332
             D
Sbjct: 261 GHD 263

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 35/285 (12%), Positives = 82/285 (28%), Gaps = 22/285 (7%)

Query: 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS 162
           + +  KSL+    +  V++  + +G  ++ +  +KT ++++V D  +      D      
Sbjct: 52  DVELHKSLDHTSVVCCVKF--SNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKD 108

Query: 163 SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNIN 222
            EN   +        +P S  +   + ++ +   K    G            +     I 
Sbjct: 109 PENLNTS-------SSPSSDLYIRSVCFSPDG--KFLATGAEDRLIRIWDIENRKIVMIL 159

Query: 223 SISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 282
                            ++   + + + + +++   + S    + + +T+    P     
Sbjct: 160 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY 219

Query: 283 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342
           +A  S    VR+ D     L +                   T    S+  + F  DGQ +
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVER----------LDSENESGTGHKDSVYSVVFTRDGQSV 269

Query: 343 LSRDYMNLKVFRYEPVMTLSFCGIYVWILRQLQHSRFMSIYALSC 387
           +S                                      + LS 
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 314

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 31/319 (9%), Positives = 76/319 (23%), Gaps = 28/319 (8%)

Query: 33  DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92
           D +S I+   +   L +    G + +++           + +S   K             
Sbjct: 12  DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--VDLLQSLRYKHPLLCCNFIDNTD 69

Query: 93  YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI 152
            +    + + E   +  +            A           +DK I        +V   
Sbjct: 70  LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129

Query: 153 KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKV 212
           +                 K         + +    +    +                 + 
Sbjct: 130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE 189

Query: 213 YPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE---- 268
               +     ++          S+ D R+ +   +     +N           L      
Sbjct: 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249

Query: 269 ---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325
               + S EF P     L  + S G +   +++       + + +++ A+ +        
Sbjct: 250 LAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQ-------TRKKIKNFAKFN-------- 293

Query: 326 IIASISDIKFANDGQHLLS 344
                S +K A     L  
Sbjct: 294 ---EDSVVKIACSDNILCL 309

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	432
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.92
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.91
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.91
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.82
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.74
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.71
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.68
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.66
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.63
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.6
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.49
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.41
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.4
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.26
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.14
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.1
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.09
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.06
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.03
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.02
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.01
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.98
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.96
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.94
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.94
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.88
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.86
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.81
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.54
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.53
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.43
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.42
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.41
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.37
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.14
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.95
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.34
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.09
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.04
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.6
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.56
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.48
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.1
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.84
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.5
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.23
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.34
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.06
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.34
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.07
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	92.99
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	92.99
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.56
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	91.42
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	90.7
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	85.91
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	84.56
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	83.75
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	83.47
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	83.29
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	81.17

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-38  Score=286.95  Aligned_cols=285  Identities=14%  Similarity=0.173  Sum_probs=227.8

Q ss_pred             CccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        26 ~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ...+.|.+.|+|++|+|+|++||+|+ ||.|+|||+++....                      .........+|.    
T Consensus        45 ~~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~----------------------~~~~~~~~~~h~----   97 (337)
T d1gxra_          45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK----------------------SPVSQLDCLNRD----   97 (337)
T ss_dssp             EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC----------------------SCSEEEECSCTT----
T ss_pred             EEECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc----------------------ceeEEeeecCCC----
Confidence            34568999999999999999999997 899999999876432                      111123345677    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (432)
                              +.|.+++|  +|++++|++|+.||.|++||+..........+..+.           ..+..+.+++++..+
T Consensus        98 --------~~I~~v~~--s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l  156 (337)
T d1gxra_          98 --------NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA-----------PACYALAISPDSKVC  156 (337)
T ss_dssp             --------SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS-----------SCEEEEEECTTSSEE
T ss_pred             --------CcEEEEEE--cCCCCEEEEeeccccccccccccccccccccccccc-----------ccccccccccccccc
Confidence                    89999999  899999999999999999999866544444444444           678889999999999


Q ss_pred             ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (432)
                      ++++.  ++.+++|++.   ..++.... ..|...+.+++|++++..++++ .|+.+++||++ .++.+..+        
T Consensus       157 ~s~~~--d~~i~~~~~~---~~~~~~~~-~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~-~~~~~~~~--------  221 (337)
T d1gxra_         157 FSCCS--DGNIAVWDLH---NQTLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR-EGRQLQQH--------  221 (337)
T ss_dssp             EEEET--TSCEEEEETT---TTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEE--------
T ss_pred             ccccc--cccccccccc---cccccccc-cccccccccccccccccccccccccccccccccc-cceeeccc--------
Confidence            99887  9999999998   66777777 7899999999999999999999 99999999999 66666654        


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      .|...|.+++|+|++ ++|++|+.||.+++||+++++.     .....|             ...|.+++|+|+|++|++
T Consensus       222 ~~~~~i~~l~~~~~~-~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~-------------~~~i~~v~~s~~g~~l~s  282 (337)
T d1gxra_         222 DFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDK-----YQLHLH-------------ESCVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             ECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCE-----EEECCC-------------SSCEEEEEECTTSSEEEE
T ss_pred             ccccceEEEEEcccc-cccceecccccccccccccccc-----cccccc-------------ccccceEEECCCCCEEEE
Confidence            567889999999999 9999999999999999998764     445555             789999999999999999


Q ss_pred             ee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          345 RD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       345 ~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      |+ |+.|++||+   +++..+....            .+..........++++|+.||.|++|+
T Consensus       283 ~s~Dg~i~iwd~~~~~~~~~~~~~~------------~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         283 TGKDNLLNAWRTPYGASIFQSKESS------------SVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECSS------------CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             EeCCCeEEEEECCCCCEEEEccCCC------------CEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            75 499999999   4444443222            122111111223588999999999998

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-37  Score=277.77  Aligned_cols=290  Identities=10%  Similarity=0.099  Sum_probs=227.7

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .+.+.+.+++++|+|+.||.+. ++.|.+|++++....                           ..+.+|.        
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~---------------------------~~~~~H~--------   58 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDT---------------------------EIYTEHS--------   58 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCC---------------------------EEECCCS--------
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCcee---------------------------EEEcCCC--------
Confidence            4455677899999999999875 568999999876543                           5788999        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                          ..|++++|  +|+|++|++|+.||+|++||+..+.......+..+.           +.|.+++|++++.++++++
T Consensus        59 ----~~v~~~~~--sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~v~~v~~s~d~~~l~~~~  121 (311)
T d1nr0a1          59 ----HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS-----------GPVKDISWDSESKRIAAVG  121 (311)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS-----------SCEEEEEECTTSCEEEEEE
T ss_pred             ----CCEEEEEE--eCCCCeEeccccCceEeeeeeecccccccccccccc-----------Ccccccccccccccccccc
Confidence                99999999  899999999999999999999887643333344444           7899999999999999887


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCE-EEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      ...+..+++|+++   ..+....+ .+|...|.+++|+|++++ +++| .|+.|++||++ +.+....+       ..|.
T Consensus       122 ~~~~~~~~v~~~~---~~~~~~~l-~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~-~~~~~~~~-------~~~~  189 (311)
T d1nr0a1         122 EGRERFGHVFLFD---TGTSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-PFKFKSTF-------GEHT  189 (311)
T ss_dssp             CCSSCSEEEEETT---TCCBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT-TBEEEEEE-------CCCS
T ss_pred             ccccccccccccc---cccccccc-cccccccccccccccceeeeccccccccccccccc-cccccccc-------cccc
Confidence            6446679999998   55666677 789999999999999886 6778 89999999999 66666655       7899


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-  346 (432)
                      ..|+++.|+|++ ++|++++.||.|++||++++..    ...++..      .....+|...|.+++|+|+|++|++|+ 
T Consensus       190 ~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~----~~~~~~~------~~~~~~h~~~V~~~~~s~~~~~l~tgs~  258 (311)
T d1nr0a1         190 KFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTK----TGVFEDD------SLKNVAHSGSVFGLTWSPDGTKIASASA  258 (311)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE----EEECBCT------TSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccCccc-cccccccccccccccccccccc----ccccccc------ccccccccccccccccCCCCCEEEEEeC
Confidence            999999999999 9999999999999999998764    3333321      011122478999999999999999985 


Q ss_pred             CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          347 YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       347 ~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      |+.|+|||+   ++++++..+..        .....+......  -.+++++.||.|.+|+.
T Consensus       259 Dg~v~iwd~~t~~~~~~l~~~~~--------~~~~~~~~~~~~--~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         259 DKTIKIWNVATLKVEKTIPVGTR--------IEDQQLGIIWTK--QALVSISANGFINFVNP  310 (311)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSS--------GGGCEEEEEECS--SCEEEEETTCCEEEEET
T ss_pred             CCeEEEEECCCCcEEEEEECCCC--------ccceEEEEEecC--CEEEEEECCCEEEEEeC
Confidence            599999999   56666766542        011111111111  14788899999999984

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.8e-37  Score=281.76  Aligned_cols=254  Identities=13%  Similarity=0.150  Sum_probs=208.4

Q ss_pred             CCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      .++|+|++|+|+|++||+|+.||.|+|||.++++                         ...+..+++|.          
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~-------------------------~~~~~~l~gH~----------   51 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-------------------------WVQVHELKEHN----------   51 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-------------------------EEEEEEEECCS----------
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC-------------------------EEEEEEecCCC----------
Confidence            4689999999999999999999999999998764                         23557889999          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT  191 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (432)
                        +.|.+++|  +|++++|++++.|++|++||+.++..........+.           ..+.+++|+|++..+++++. 
T Consensus        52 --~~V~~l~f--sp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~-----------~~v~~i~~~p~~~~l~~~s~-  115 (371)
T d1k8kc_          52 --GQVTGVDW--APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN-----------RAARCVRWAPNEKKFAVGSG-  115 (371)
T ss_dssp             --SCEEEEEE--ETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS-----------SCEEEEEECTTSSEEEEEET-
T ss_pred             --CCEEEEEE--CCCCCEEEEEECCCeEEEEeeccccccccccccccc-----------ccccccccccccccceeecc-
Confidence              99999999  899999999999999999999988766665555555           78999999999999999988 


Q ss_pred             ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeE----eecC------C
Q 014005          192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI----VDMK------P  260 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~----~~~~------~  260 (432)
                       ++.+++|++...............|...|.+++|+|++++|++| .|+++++||..........    ....      .
T Consensus       116 -d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (371)
T d1k8kc_         116 -SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM  194 (371)
T ss_dssp             -TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE
T ss_pred             -cCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeee
Confidence             99999999885433333333336789999999999999999999 9999999998622110000    0000      0


Q ss_pred             CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (432)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~  340 (432)
                      .....|...|.+++|+|++ ++|++++.|+.|++||+++++.    +..+..|             ..+|.+++|+|||+
T Consensus       195 ~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~-------------~~~v~s~~fs~d~~  256 (371)
T d1k8kc_         195 FESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMA----VATLASE-------------TLPLLAVTFITESS  256 (371)
T ss_dssp             EECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTE----EEEEECS-------------SCCEEEEEEEETTE
T ss_pred             eeccCccCcEEEEEeeccc-ccccccccCCcceEEeeecccc----eeeeecc-------------cccceeeeecCCCC
Confidence            1236788899999999999 9999999999999999998775    5777776             67899999999999


Q ss_pred             EEEEeeCCeEEEEec
Q 014005          341 HLLSRDYMNLKVFRY  355 (432)
Q Consensus       341 ~l~s~~~~~i~iwd~  355 (432)
                      +|++|.|+.+++|+.
T Consensus       257 ~la~g~d~~~~~~~~  271 (371)
T d1k8kc_         257 LVAAGHDCFPVLFTY  271 (371)
T ss_dssp             EEEEETTSSCEEEEE
T ss_pred             EEEEEcCCceEEEEe
Confidence            999998877777665

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.9e-37  Score=281.36  Aligned_cols=323  Identities=13%  Similarity=0.139  Sum_probs=220.3

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      .++|++.|+||+|+|+|++||+|+ |++|+|||+.+++............         ..+.........+|.      
T Consensus        58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~------  121 (388)
T d1erja_          58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN---------KDPENLNTSSSPSSD------  121 (388)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------------CCC------
T ss_pred             eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccc---------ccccccccccccCCC------
Confidence            356999999999999999999987 8999999998876431100000000         000011112233454      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                            ..|.+++|  +|++++|++|+.||.|++||...++...  ....+.           ..|.++.+++++..++.
T Consensus       122 ------~~V~~l~~--s~~~~~l~s~~~dg~v~i~~~~~~~~~~--~~~~h~-----------~~v~~~~~~~~~~~~~~  180 (388)
T d1erja_         122 ------LYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIVM--ILQGHE-----------QDIYSLDYFPSGDKLVS  180 (388)
T ss_dssp             ------CBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEE--EECCCS-----------SCEEEEEECTTSSEEEE
T ss_pred             ------CCEEEEEE--CCCCCcceeccccccccccccccccccc--cccccc-----------ccccccccccccccccc
Confidence                  78999999  8999999999999999999998876433  333444           77899999999999999


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      ++.  ++.+++||..   ........ ..+...+....+.++++++++| .|+.|++||.+ .+.....+........+|
T Consensus       181 ~~~--~~~i~~~d~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~-~~~~~~~~~~~~~~~~~h  253 (388)
T d1erja_         181 GSG--DRTVRIWDLR---TGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGH  253 (388)
T ss_dssp             EET--TSEEEEEETT---TTEEEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT-TCCEEEEEC------CCC
T ss_pred             ccc--ceeeeeeecc---cccccccc-ccccccccccccCCCCCeEEEEcCCCeEEEeecc-cCccceeeccccccccCC
Confidence            888  9999999998   55555555 4444444444445588899999 99999999999 566666554444455688


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~  346 (432)
                      ...|++++|+|++ ++|++|+.||.|++||++++...    ..... +...........|...|.+++|+|+|++|++|+
T Consensus       254 ~~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~  327 (388)
T d1erja_         254 KDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNK----SDSKT-PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS  327 (388)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCEEEEEE
T ss_pred             CCCEEEEEECCCC-CEEEEEECCCcEEEEeccCCccc----ccccc-ccccceeeecccccceEEEEEECCCCCEEEEEe
Confidence            9999999999999 99999999999999999876532    11111 000111112233478899999999999999985


Q ss_pred             C-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          347 Y-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       347 ~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      . |.|++||+   +++.+++.|...+......     ..........++++|+.||.|++|+-
T Consensus       328 ~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~-----~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         328 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA-----NGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-----SSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCCEEEEEEe-----cCcccCCCCCEEEEEeCCCEEEEEee
Confidence            5 99999999   7788888876422111111     00111123346899999999999983

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.5e-36  Score=266.96  Aligned_cols=281  Identities=16%  Similarity=0.235  Sum_probs=236.4

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ..+|++.|++|+|+|++++||+|+.||+|+|||+++++..                           .++.+|.      
T Consensus        13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~---------------------------~~~~~h~------   59 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE---------------------------RTLKGHT------   59 (317)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC---------------------------EEECCCS------
T ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEE---------------------------EEEeCCC------
Confidence            3469999999999999999999999999999999887644                           6888999      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                            ..|.+++|  ++++.+++++..++.+.+|+....+...  ....+.           ..+..+.+++++..+++
T Consensus        60 ------~~V~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----------~~~~~~~~~~~~~~~~~  118 (317)
T d1vyhc1          60 ------DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFECIR--TMHGHD-----------HNVSSVSIMPNGDHIVS  118 (317)
T ss_dssp             ------SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCEEE--CCCCCS-----------SCEEEEEECSSSSEEEE
T ss_pred             ------CcEEEEee--eccccccccccccccccccccccccccc--cccccc-----------ccceeeeccCCCceEEe
Confidence                  99999999  8999999999999999999988766332  233333           67788999999999999


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      +..  ++.+++||++   .......+ .+|...+.+++++|++.+++++ .|+.|++|+++ .......+       .+|
T Consensus       119 ~~~--d~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~-~~~~~~~~-------~~~  184 (317)
T d1vyhc1         119 ASR--DKTIKMWEVQ---TGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA-TKECKAEL-------REH  184 (317)
T ss_dssp             EET--TSEEEEEETT---TCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEE-------CCC
T ss_pred             ecc--CcceeEeecc---cceeeeEE-ccCCCcceeeecccCCCEEEEEeCCCeEEEEeec-cceeeEEE-------ecC
Confidence            888  9999999998   66777888 7899999999999999999999 99999999999 56666655       778


Q ss_pred             CcceEEEEEcCCCC-------------------cEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005          267 TEVITSAEFHPIYC-------------------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (432)
Q Consensus       267 ~~~v~~~~~~p~~~-------------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  327 (432)
                      ...+.++.|+|++.                   .++++++.|+.|++||+++++.    +..+.+|             .
T Consensus       185 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~----~~~~~~~-------------~  247 (317)
T d1vyhc1         185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC----LMTLVGH-------------D  247 (317)
T ss_dssp             SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE----EEEEECC-------------S
T ss_pred             CCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcE----EEEEeCC-------------C
Confidence            88899999887531                   4689999999999999998876    6788887             7


Q ss_pred             cceeEEEEcCCCCEEEEee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeee
Q 014005          328 ASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSAL  403 (432)
Q Consensus       328 ~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~  403 (432)
                      ..|.+++|+|+|++|++|+ ||.|++||+   +++.++..|..           .+..+..+....++++|+.||.|++|
T Consensus       248 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~-----------~V~~~~~s~~~~~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-----------FVTSLDFHKTAPYVVTGSVDQTVKVW  316 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS-----------CEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC-----------CEEEEEEcCCCCEEEEEeCCCeEEEe
Confidence            8999999999999999975 599999999   77888887764           22222222222358899999999999


Q ss_pred             c
Q 014005          404 S  404 (432)
Q Consensus       404 ~  404 (432)
                      +
T Consensus       317 d  317 (317)
T d1vyhc1         317 E  317 (317)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.4e-36  Score=266.30  Aligned_cols=251  Identities=13%  Similarity=0.123  Sum_probs=206.4

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|.+.|+|++|+|+|++||+|+.||+|+|||+.+....                         ....+.+|.       
T Consensus        55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~-------------------------~~~~~~~~~-------  102 (311)
T d1nr0a1          55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-------------------------LKTTIPVFS-------  102 (311)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-------------------------EEEEEECSS-------
T ss_pred             cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc-------------------------ccccccccc-------
Confidence            468999999999999999999999999999999886532                         335678898       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeC--CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc-e
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH-G  185 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~  185 (432)
                           ..|.+++|  +|+++++++++.  ++.+++|++++++..  ..+..|.           ..|.+++|+|++.+ +
T Consensus       103 -----~~v~~v~~--s~d~~~l~~~~~~~~~~~~v~~~~~~~~~--~~l~~h~-----------~~v~~v~~~~~~~~~l  162 (311)
T d1nr0a1         103 -----GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDTGTSN--GNLTGQA-----------RAMNSVDFKPSRPFRI  162 (311)
T ss_dssp             -----SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTTCCBC--BCCCCCS-----------SCEEEEEECSSSSCEE
T ss_pred             -----Cccccccc--ccccccccccccccccccccccccccccc--ccccccc-----------cccccccccccceeee
Confidence                 99999999  899999999875  466999999887633  2344444           67999999999886 6


Q ss_pred             ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (432)
                      ++++.  |+.+++||++   ..++...+ ..|...|+++.++|++++++++ .|+.+++||.+ .+.....++.......
T Consensus       163 ~sgs~--d~~i~i~d~~---~~~~~~~~-~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~-~~~~~~~~~~~~~~~~  235 (311)
T d1nr0a1         163 ISGSD--DNTVAIFEGP---PFKFKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV-DGTKTGVFEDDSLKNV  235 (311)
T ss_dssp             EEEET--TSCEEEEETT---TBEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEECBCTTSSSC
T ss_pred             ccccc--cccccccccc---cccccccc-ccccccccccccCccccccccccccccccccccc-cccccccccccccccc
Confidence            66777  9999999998   67788877 7899999999999999999999 99999999999 6666777665556667


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      +|...|++++|+|++ ++|++|+.||.|+|||+++++.    ++.+..|..          ....+.++.|  ++.+|++
T Consensus       236 ~h~~~V~~~~~s~~~-~~l~tgs~Dg~v~iwd~~t~~~----~~~l~~~~~----------~~~~~~~~~~--~~~~l~s  298 (311)
T d1nr0a1         236 AHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKV----EKTIPVGTR----------IEDQQLGIIW--TKQALVS  298 (311)
T ss_dssp             SSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE----EEEEECCSS----------GGGCEEEEEE--CSSCEEE
T ss_pred             cccccccccccCCCC-CEEEEEeCCCeEEEEECCCCcE----EEEEECCCC----------ccceEEEEEe--cCCEEEE
Confidence            899999999999999 9999999999999999999876    577766410          0123444555  4557777


Q ss_pred             e-eCCeEEEEec
Q 014005          345 R-DYMNLKVFRY  355 (432)
Q Consensus       345 ~-~~~~i~iwd~  355 (432)
                      + .+|.|++||+
T Consensus       299 ~s~dG~i~~wd~  310 (311)
T d1nr0a1         299 ISANGFINFVNP  310 (311)
T ss_dssp             EETTCCEEEEET
T ss_pred             EECCCEEEEEeC
Confidence            6 5599999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-35  Score=266.84  Aligned_cols=255  Identities=16%  Similarity=0.211  Sum_probs=207.3

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      .+|.+.|++++|+|++++||+|+.||+|+|||+.+++                           .+..+.+|.       
T Consensus        52 ~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~---------------------------~~~~~~~~~-------   97 (340)
T d1tbga_          52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN---------------------------KVHAIPLRS-------   97 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE---------------------------EEEEEECSC-------
T ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce---------------------------eEEEEeccc-------
Confidence            3699999999999999999999999999999998875                           346788898       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcce--eeeeecCCCCccc------------------------
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV--KKIKEMDHFPFVS------------------------  162 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~------------------------  162 (432)
                           ..|.+++|  +|++.++++|+.|+.+.+|+......  .....+..+....                        
T Consensus        98 -----~~v~~v~~--~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (340)
T d1tbga_          98 -----SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD  170 (340)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEE
T ss_pred             -----ccEEeeEe--eccceeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccc
Confidence                 99999999  89999999999999999999765431  1111111111100                        


Q ss_pred             ------cccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE
Q 014005          163 ------SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA  236 (432)
Q Consensus       163 ------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  236 (432)
                            ..........+....+.+...+++++..  ++.+++||++   ..+++..+ .+|...|++++|+|++++|++|
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~v~i~d~~---~~~~~~~~-~~h~~~i~~v~~~p~~~~l~s~  244 (340)
T d1tbga_         171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC--DASAKLWDVR---EGMCRQTF-TGHESDINAICFFPNGNAFATG  244 (340)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET--TTEEEEEETT---TTEEEEEE-CCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccceeEeeeccccccceeEEeec--CceEEEEECC---CCcEEEEE-eCCCCCeEEEEECCCCCEEEEE
Confidence                  0000111334455566677777787777  9999999998   77888888 7899999999999999999999


Q ss_pred             -cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccc
Q 014005          237 -DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE  315 (432)
Q Consensus       237 -~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~  315 (432)
                       .|+.|++||++ .......+     ....+...|++++|+|++ ++|++|+.||.|++||+.+++.    +..+.+|  
T Consensus       245 s~d~~i~~~~~~-~~~~~~~~-----~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~~----~~~~~~H--  311 (340)
T d1tbga_         245 SDDATCRLFDLR-ADQELMTY-----SHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADR----AGVLAGH--  311 (340)
T ss_dssp             ETTSCEEEEETT-TTEEEEEE-----CCTTCCSCEEEEEECSSS-CEEEEEETTSCEEEEETTTCCE----EEEECCC--
T ss_pred             eCCCeEEEEeec-cccccccc-----ccccccCceEEEEECCCC-CEEEEEECCCEEEEEECCCCcE----EEEEcCC--
Confidence             99999999999 55555544     235667789999999999 9999999999999999998876    6888887  


Q ss_pred             ccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEe
Q 014005          316 SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFR  354 (432)
Q Consensus       316 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd  354 (432)
                                 .++|++++|+|+|++|++|+ ||.|+|||
T Consensus       312 -----------~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         312 -----------DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -----------SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             -----------CCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence                       78999999999999999975 59999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-34  Score=258.72  Aligned_cols=261  Identities=10%  Similarity=0.118  Sum_probs=214.7

Q ss_pred             ccccchhhhhhhhcCCC--CCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccc
Q 014005            8 ASASLEWKCSQAFGERN--PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTS   85 (432)
Q Consensus         8 ~~~~~~w~~~~~~~~~~--~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (432)
                      +.....|++...-....  ......|.+.|++++|+|+|++|++|+.||+|++||+....                    
T Consensus        71 dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~--------------------  130 (337)
T d1gxra_          71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT--------------------  130 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------------------
T ss_pred             CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc--------------------
Confidence            34567788764322111  12234788999999999999999999999999999987653                    


Q ss_pred             cccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccc
Q 014005           86 TSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN  165 (432)
Q Consensus        86 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  165 (432)
                           .+....+.+|.            ..+..+.|  +|++.++++++.|+.|++|++.+++....  ...+.      
T Consensus       131 -----~~~~~~~~~~~------------~~v~~~~~--~~~~~~l~s~~~d~~i~~~~~~~~~~~~~--~~~~~------  183 (337)
T d1gxra_         131 -----PRIKAELTSSA------------PACYALAI--SPDSKVCFSCCSDGNIAVWDLHNQTLVRQ--FQGHT------  183 (337)
T ss_dssp             ------EEEEEEECSS------------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEE--ECCCS------
T ss_pred             -----ccccccccccc------------cccccccc--ccccccccccccccccccccccccccccc--ccccc------
Confidence                 22446677888            88999999  89999999999999999999998874432  33333      


Q ss_pred             ccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEE
Q 014005          166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW  244 (432)
Q Consensus       166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lw  244 (432)
                           ..+.+++|++++..++.++.  ++.+++||++   ..+.++.+  .+...|.+++|+|+++.+++| .|+.+++|
T Consensus       184 -----~~v~~l~~s~~~~~~~~~~~--d~~v~i~d~~---~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~  251 (337)
T d1gxra_         184 -----DGASCIDISNDGTKLWTGGL--DNTVRSWDLR---EGRQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVL  251 (337)
T ss_dssp             -----SCEEEEEECTTSSEEEEEET--TSEEEEEETT---TTEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             -----cccccccccccccccccccc--cccccccccc---cceeeccc--ccccceEEEEEcccccccceeccccccccc
Confidence                 67899999999999999988  9999999998   66777765  578899999999999999999 99999999


Q ss_pred             eCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcccee
Q 014005          245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT  324 (432)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~  324 (432)
                      |++ .......        ..|...|++++|+|++ ++|++++.||.|++||+.+++.    +..+..            
T Consensus       252 d~~-~~~~~~~--------~~~~~~i~~v~~s~~g-~~l~s~s~Dg~i~iwd~~~~~~----~~~~~~------------  305 (337)
T d1gxra_         252 HVN-KPDKYQL--------HLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGAS----IFQSKE------------  305 (337)
T ss_dssp             ETT-SSCEEEE--------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE----EEEEEC------------
T ss_pred             ccc-ccccccc--------cccccccceEEECCCC-CEEEEEeCCCeEEEEECCCCCE----EEEccC------------
Confidence            999 4444332        6788999999999999 9999999999999999998875    344443            


Q ss_pred             eeecceeEEEEcCCCCEEEEee-CCeEEEEec
Q 014005          325 EIIASISDIKFANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       325 ~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~  355 (432)
                        ...|.+++|+|+|++|++|+ |++|+|||+
T Consensus       306 --~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         306 --SSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             --SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             --CCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence              57899999999999999975 499999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.3e-34  Score=255.53  Aligned_cols=283  Identities=13%  Similarity=0.098  Sum_probs=206.6

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeee-ecCCcccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYL  107 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~~  107 (432)
                      .+|.+.|++++|+|+|++||+|+.||+|++||+++++..                           ..+ .+|.      
T Consensus         9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~---------------------------~~~~~~h~------   55 (299)
T d1nr0a2           9 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN---------------------------RVFPDVHA------   55 (299)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE---------------------------ECSSCSCS------
T ss_pred             CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE---------------------------EEEcCCCC------
Confidence            479999999999999999999999999999999886532                           344 4677      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                            ..|.+++|  +|+++ +++++.|+.+++|+.............          ......+..+++++++..++.
T Consensus        56 ------~~v~~v~~--~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~s~~g~~~~~  116 (299)
T d1nr0a2          56 ------TMITGIKT--TSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVA----------NKLSSQPLGLAVSADGDIAVA  116 (299)
T ss_dssp             ------SCEEEEEE--CTTSC-EEEEETTTEEEEECSSSSSSCTTSCCE----------EECSSCEEEEEECTTSSCEEE
T ss_pred             ------CcEEEEEe--eccce-eecccceeeEEEeccCCcccccccccc----------ccccccccccccccccccccc
Confidence                  89999999  88886 566778999999998754422111110          011256778889999887776


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      +.   ++.+++|+..     +....   .....+.+++|+|+++++++| .|+.+++||++ +.......      ...|
T Consensus       117 ~~---~~~i~~~~~~-----~~~~~---~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~-~~~~~~~~------~~~~  178 (299)
T d1nr0a2         117 AC---YKHIAIYSHG-----KLTEV---PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLS-GASVSEVK------TIVH  178 (299)
T ss_dssp             EE---SSEEEEEETT-----EEEEE---ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEE-TTEEEEEE------EEEC
T ss_pred             cc---cccccccccc-----ccccc---ccccccccccccccccccccccccccccccccc-cccccccc------cccc
Confidence            54   6789999865     22222   234567899999999999999 99999999998 44433321      2567


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee
Q 014005          267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD  346 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~  346 (432)
                      ...|++++|+|++ ++|++++.|+.|++||+.++.... ....+.+|             ...|.+++|+|+|++|++|+
T Consensus       179 ~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~h-------------~~~v~~l~~s~~~~~l~sgs  243 (299)
T d1nr0a2         179 PAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFELA-HTNSWTFH-------------TAKVACVSWSPDNVRLATGS  243 (299)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEES-CCCCCCCC-------------SSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccc-cccccccccccccccccccccccc-cccccccc-------------ccccccccccccccceEEEc
Confidence            8899999999999 999999999999999998765421 13445555             78999999999999999985


Q ss_pred             C-CeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeecc
Q 014005          347 Y-MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSA  405 (432)
Q Consensus       347 ~-~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~  405 (432)
                      . +.|++||+   .....+.....        ....+...+..+ ..++++|+.|+.|++|+-
T Consensus       244 ~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~v~~~~~~~-~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         244 LDNSVIVWNMNKPSDHPIIIKGAH--------AMSSVNSVIWLN-ETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             TTSCEEEEETTCTTSCCEEETTSS--------TTSCEEEEEEEE-TTEEEEEETTSCEEEEEC
T ss_pred             CCCEEEEEECCCCCcceEEEecCC--------CCCcEEEEEECC-CCEEEEEeCCCEEEEEec
Confidence            4 99999999   11122211110        111222222111 125889999999999983

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-33  Score=251.13  Aligned_cols=291  Identities=11%  Similarity=0.057  Sum_probs=212.9

Q ss_pred             CcEEEEEEcCCCCEEEEecccc-eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           33 DIVSAIEFDKTGDYLAVGDRGG-RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~t~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ..+++++|+|+|+.||.++.+. .|+.|+....+                         ......+.+|.          
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~-------------------------~~~~~~~~gh~----------   62 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK-------------------------VPPVVQFTGHG----------   62 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCS-------------------------SCSEEEECTTT----------
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCC-------------------------ccceEEEeCCC----------
Confidence            3568999999999999876543 34555543332                         22345677774          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeee------ecCCCCccccccccccccccccccCCCCCcce
Q 014005          112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK------EMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (432)
                       ...|++++|+|..++++|++|+.||+|++||+..++.....      ....+.           +.|.+++|++++..+
T Consensus        63 -~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~v~~s~~~~~l  130 (325)
T d1pgua1          63 -SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA-----------GPISDISWDFEGRRL  130 (325)
T ss_dssp             -TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS-----------SCEEEEEECTTSSEE
T ss_pred             -CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccccccccccc-----------CcEEEEEECCCCCcc
Confidence             16799999944447789999999999999999765421111      112222           789999999999999


Q ss_pred             ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCE-EEEE-cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNM  263 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (432)
                      +.++...++.+.+|+.+   .++++..+ .+|...|.+++|+|+++. ++++ .|+.+++||.+ ..+....+    ...
T Consensus       131 ~~~~~~~~~~~~~~~~~---~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~-~~~~~~~~----~~~  201 (325)
T d1pgua1         131 CVVGEGRDNFGVFISWD---SGNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP-PFKFSASD----RTH  201 (325)
T ss_dssp             EEEECCSSCSEEEEETT---TCCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT-TBEEEEEE----CSS
T ss_pred             ceeeccccceEEEEeec---ccccceee-eecccccccccccccccceEEEeeccccccccccc-ccccceec----ccc
Confidence            88776557789999988   67788888 789999999999999876 5567 89999999998 44433332    234


Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc---CCCC
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA---NDGQ  340 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s---~dg~  340 (432)
                      ..|...|++++|+|++..+|++++.||.|++||+++++.    +..+.+|             ..++.++.|+   |||+
T Consensus       202 ~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~----~~~l~~~-------------~~~v~~~~~s~~~~dg~  264 (325)
T d1pgua1         202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF----LKYIEDD-------------QEPVQGGIFALSWLDSQ  264 (325)
T ss_dssp             SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE----EEECCBT-------------TBCCCSCEEEEEESSSS
T ss_pred             cCCCCccEEeeeccccceeccccccccceeeeeeccccc----ccccccc-------------ccccccceeeeeccCCC
Confidence            677888999999998558999999999999999998876    6788876             4555555555   6899


Q ss_pred             EEEEe-eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          341 HLLSR-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       341 ~l~s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      +|+++ .|+.|+|||+   ++++.+..+...      .....++.  ......++++|+.||.|++|+
T Consensus       265 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQ------LGNQQVGV--VATGNGRIISLSLDGTLNFYE  324 (325)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCTTC------GGGCEEEE--EEEETTEEEEEETTSCEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEEEecCCc------ccCeEEEE--EECCCCEEEEEECCCEEEEEE
Confidence            99997 4599999999   566777665530      00001111  111112588999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-31  Score=243.96  Aligned_cols=249  Identities=14%  Similarity=0.187  Sum_probs=195.4

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|...|++++|+|+|++|++|+.||.|++|+...++                           ....+.+|.       
T Consensus       118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~---------------------------~~~~~~~h~-------  163 (388)
T d1erja_         118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK---------------------------IVMILQGHE-------  163 (388)
T ss_dssp             -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS-------
T ss_pred             cCCCCCEEEEEECCCCCcceecccccccccccccccc---------------------------ccccccccc-------
Confidence            4577889999999999999999999999999988765                           336778898       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           ..|.++.|  ++++..+++++.++.+++||..+..........  .           ..+....+.+++.+++++
T Consensus       164 -----~~v~~~~~--~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~l~~~  223 (388)
T d1erja_         164 -----QDIYSLDY--FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE--D-----------GVTTVAVSPGDGKYIAAG  223 (388)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECS--S-----------CEEEEEECSTTCCEEEEE
T ss_pred             -----cccccccc--ccccccccccccceeeeeeeccccccccccccc--c-----------ccccccccCCCCCeEEEE
Confidence                 99999999  899999999999999999999887644433322  1           223334455678889888


Q ss_pred             eeeccceEEEEeecccccceeeEEe------ecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecC--
Q 014005          189 EWTENMATKIANVGNSVHARCQKVY------PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--  259 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~--  259 (432)
                      +.  ++.+++|+..   .......+      ..+|...|.+++|+|++++|+++ .|+.|++||++.. .........  
T Consensus       224 ~~--d~~i~i~~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~  297 (388)
T d1erja_         224 SL--DRAVRVWDSE---TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA-NNKSDSKTPNS  297 (388)
T ss_dssp             ET--TSCEEEEETT---TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred             cC--CCeEEEeecc---cCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCC-ccccccccccc
Confidence            88  9999999998   33443332      14688899999999999999999 9999999999732 221111000  


Q ss_pred             ---CCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEE-
Q 014005          260 ---PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF-  335 (432)
Q Consensus       260 ---~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~-  335 (432)
                         ......|...|++++|+|++ ++|++|+.||.|++||+++++.    +..+++|             .+.|.++++ 
T Consensus       298 ~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~----~~~l~~H-------------~~~V~~~~~~  359 (388)
T d1erja_         298 GTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNP----LLMLQGH-------------RNSVISVAVA  359 (388)
T ss_dssp             -CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCE----EEEEECC-------------SSCEEEEEEC
T ss_pred             cceeeecccccceEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcE----EEEEeCC-------------CCCEEEEEEe
Confidence               00225678899999999999 9999999999999999999886    6888887             778888874 


Q ss_pred             -----cCCCCEEEEee-CCeEEEEec
Q 014005          336 -----ANDGQHLLSRD-YMNLKVFRY  355 (432)
Q Consensus       336 -----s~dg~~l~s~~-~~~i~iwd~  355 (432)
                           +|++.+|++|+ ||+|+|||+
T Consensus       360 ~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         360 NGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             SSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             cCcccCCCCCEEEEEeCCCEEEEEee
Confidence                 67899999975 599999998

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.3e-31  Score=233.08  Aligned_cols=263  Identities=16%  Similarity=0.262  Sum_probs=219.6

Q ss_pred             cchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccc
Q 014005            3 LNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMD   82 (432)
Q Consensus         3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   82 (432)
                      +++..+.....|++...   +.......|.+.|++++|+|++.+++++..++.+.+|+....+.                
T Consensus        33 ~s~s~Dg~i~iWd~~~~---~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------   93 (317)
T d1vyhc1          33 VSASEDATIKVWDYETG---DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC----------------   93 (317)
T ss_dssp             EEEESSSCEEEEETTTC---CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE----------------
T ss_pred             EEEeCCCeEEEEECCCC---CEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccc----------------
Confidence            34455566778876531   12223345899999999999999999999999999999876542                


Q ss_pred             ccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccc
Q 014005           83 FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS  162 (432)
Q Consensus        83 ~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  162 (432)
                                 ...+.+|.            ..+.++.|  +++++.+++++.|+.+++||+.+++...  .+..+.   
T Consensus        94 -----------~~~~~~~~------------~~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~---  143 (317)
T d1vyhc1          94 -----------IRTMHGHD------------HNVSSVSI--MPNGDHIVSASRDKTIKMWEVQTGYCVK--TFTGHR---  143 (317)
T ss_dssp             -----------EECCCCCS------------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEE--EEECCS---
T ss_pred             -----------cccccccc------------ccceeeec--cCCCceEEeeccCcceeEeecccceeee--EEccCC---
Confidence                       24566777            88999999  8999999999999999999999877433  233333   


Q ss_pred             cccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC------------
Q 014005          163 SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC------------  230 (432)
Q Consensus       163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------  230 (432)
                              ..+..+++++++.++++++.  ++.+++|+..   .......+ .+|...+.+++++|++            
T Consensus       144 --------~~~~~~~~~~~~~~l~~~~~--d~~v~~~~~~---~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~  209 (317)
T d1vyhc1         144 --------EWVRMVRPNQDGTLIASCSN--DQTVRVWVVA---TKECKAEL-REHRHVVECISWAPESSYSSISEATGSE  209 (317)
T ss_dssp             --------SCEEEEEECTTSSEEEEEET--TSCEEEEETT---TCCEEEEE-CCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred             --------CcceeeecccCCCEEEEEeC--CCeEEEEeec---cceeeEEE-ecCCCCceEEEEeeccccceeeccccce
Confidence                    67888999999999999988  9999999998   66777777 7889999999998764            


Q ss_pred             --------CEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccc
Q 014005          231 --------ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA  301 (432)
Q Consensus       231 --------~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~  301 (432)
                              ..++++ .|+.|++||++ ++..+..+       .+|...|++++|+|++ ++|++|+.||.|++||+++++
T Consensus       210 ~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~-------~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~  280 (317)
T d1vyhc1         210 TKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMTL-------VGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKR  280 (317)
T ss_dssp             -------CCEEEEEETTSEEEEEETT-TTEEEEEE-------ECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSC
T ss_pred             eeeeccCCceeEeccCCCEEEEEECC-CCcEEEEE-------eCCCCCEEEEEECCCC-CEEEEEECCCeEEEEECCCCc
Confidence                    367788 99999999999 67777766       7899999999999999 999999999999999999887


Q ss_pred             cccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEe
Q 014005          302 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFR  354 (432)
Q Consensus       302 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd  354 (432)
                      .    +..+.+|             ...|++++|+|++++|++|+ ||+|+|||
T Consensus       281 ~----~~~~~~h-------------~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         281 C----MKTLNAH-------------EHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             C----CEEEECC-------------SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             E----EEEEcCC-------------CCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            6    6888887             78999999999999999975 49999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=5.3e-30  Score=234.51  Aligned_cols=260  Identities=10%  Similarity=0.061  Sum_probs=196.0

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      -.|.+.|++++|+|++++|++|+.|++|+|||++++..                         .....+.+|.       
T Consensus        48 ~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~-------------------------~~~~~~~~~~-------   95 (371)
T d1k8kc_          48 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW-------------------------KPTLVILRIN-------   95 (371)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE-------------------------EEEEECCCCS-------
T ss_pred             cCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc-------------------------cccccccccc-------
Confidence            36899999999999999999999999999999987642                         2334567787       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceee--eeecCCCCccccccccccccccccccCCCCCccee
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK--IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY  186 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (432)
                           ..|.+++|  +|+++.|++++.|+.+++|++.......  ......+.           ..|.+++|+|++.+++
T Consensus        96 -----~~v~~i~~--~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~-----------~~v~~v~~~p~~~~l~  157 (371)
T d1k8kc_          96 -----RAARCVRW--APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR-----------STVLSLDWHPNSVLLA  157 (371)
T ss_dssp             -----SCEEEEEE--CTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC-----------SCEEEEEECTTSSEEE
T ss_pred             -----cccccccc--ccccccceeecccCcceeeeeecccccccccccccccc-----------ccccccccccccccee
Confidence                 89999999  8999999999999999999987654222  12222333           6789999999999999


Q ss_pred             cceeeccceEEEEeecccc---------------cceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC
Q 014005          187 HLEWTENMATKIANVGNSV---------------HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD  250 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~---------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~  250 (432)
                      +++.  |+.+++|+.....               ........ ..|...|.+++|+|+++.++++ .|+.|++||++ .+
T Consensus       158 s~s~--D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~-~~  233 (371)
T d1k8kc_         158 AGSC--DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD-KK  233 (371)
T ss_dssp             EEET--TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG-GT
T ss_pred             cccc--CcEEEEEeeccCccccccccccccccccceeeeeec-cCccCcEEEEEeecccccccccccCCcceEEeee-cc
Confidence            9988  9999999976321               12234444 6788999999999999999999 99999999999 56


Q ss_pred             ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccccc---------------
Q 014005          251 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE---------------  315 (432)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~---------------  315 (432)
                      ..+..+       ..|..+|++++|+|++ ++|++| .|+.+++|+.......    ..+..+..               
T Consensus       234 ~~~~~~-------~~~~~~v~s~~fs~d~-~~la~g-~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  300 (371)
T d1k8kc_         234 MAVATL-------ASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGK----LSFGGRLDVPKQSSQRGLTARER  300 (371)
T ss_dssp             TEEEEE-------ECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTE----EEECCCCCCC--------CHHHH
T ss_pred             cceeee-------ecccccceeeeecCCC-CEEEEE-cCCceEEEEeeCCCce----EEEeeeecCccccccccccceee
Confidence            666665       7888899999999998 877755 5777777765543211    11111000               


Q ss_pred             -------------ccCCccceeeeecceeEEEEcCCC----CEEEEe-eCCeEEEEec
Q 014005          316 -------------SHGSKSFFTEIIASISDIKFANDG----QHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       316 -------------~~~~~~~~~~~~~~v~~~~~s~dg----~~l~s~-~~~~i~iwd~  355 (432)
                                   ..........|.+.|+++++.+.+    ..|+|+ .||.|++||+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~  358 (371)
T d1k8kc_         301 FQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  358 (371)
T ss_dssp             HHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             EecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence                         000001122377889999998754    357786 5699999999

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=5e-30  Score=230.92  Aligned_cols=251  Identities=19%  Similarity=0.226  Sum_probs=195.5

Q ss_pred             CcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccccccccc
Q 014005           90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (432)
Q Consensus        90 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (432)
                      ..+..++++||+            +.|++++|  +|++++|++|+.||+|++||+.+++...  .+..+.          
T Consensus        44 ~~~~~~tL~GH~------------~~I~~l~~--s~~~~~l~sgs~Dg~v~iWd~~~~~~~~--~~~~~~----------   97 (340)
T d1tbga_          44 QMRTRRTLRGHL------------AKIYAMHW--GTDSRLLVSASQDGKLIIWDSYTTNKVH--AIPLRS----------   97 (340)
T ss_dssp             CCCEEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTTEEEE--EEECSC----------
T ss_pred             ceeeeEEECCCC------------CCEEEEEE--CCCCCEEEEEECCCceeeeecccceeEE--EEeccc----------
Confidence            445668899999            99999999  8999999999999999999999887433  333344          


Q ss_pred             ccccccccCCCCCcceecceeeccceEEEEeeccccc-ceeeEEe-----------------------------------
Q 014005          170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH-ARCQKVY-----------------------------------  213 (432)
Q Consensus       170 ~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~-~~~~~~~-----------------------------------  213 (432)
                       ..|.+++|+|++.+++.++.  ++.+.+|+...... ......+                                   
T Consensus        98 -~~v~~v~~~~~~~~l~~~~~--d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (340)
T d1tbga_          98 -SWVMTCAYAPSGNYVACGGL--DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG  174 (340)
T ss_dssp             -SCEEEEEECTTSSEEEEEET--TCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTT
T ss_pred             -ccEEeeEeeccceeeeeecc--cceeecccccccccccccceecccccccccccccccccccccccccccccccccccc
Confidence             78999999999999999988  88898888653211 1111110                                   


Q ss_pred             -----ecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe
Q 014005          214 -----PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS  287 (432)
Q Consensus       214 -----~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  287 (432)
                           ...+...+....+.+.+.++++| .|+.|++||++ .+..+..+       .+|...|++++|+|++ ++|++|+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~-~~~~~~~~-------~~h~~~i~~v~~~p~~-~~l~s~s  245 (340)
T d1tbga_         175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-EGMCRQTF-------TGHESDINAICFFPNG-NAFATGS  245 (340)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-TTEEEEEE-------CCCSSCEEEEEECTTS-SEEEEEE
T ss_pred             cccccccccceeEeeeccccccceeEEeecCceEEEEECC-CCcEEEEE-------eCCCCCeEEEEECCCC-CEEEEEe
Confidence                 02334567788888899999999 99999999999 67777766       7899999999999999 9999999


Q ss_pred             CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec---CcceeEee
Q 014005          288 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY---EPVMTLSF  363 (432)
Q Consensus       288 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~---~~~~~~~~  363 (432)
                      .||.|++||++....    ...+..+           .+...|.+++|+|+|++|++|+. |.|++||+   +++..+..
T Consensus       246 ~d~~i~~~~~~~~~~----~~~~~~~-----------~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  310 (340)
T d1tbga_         246 DDATCRLFDLRADQE----LMTYSHD-----------NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG  310 (340)
T ss_dssp             TTSCEEEEETTTTEE----EEEECCT-----------TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             CCCeEEEEeeccccc----ccccccc-----------cccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC
Confidence            999999999997664    3333221           01567999999999999999855 99999999   77777777


Q ss_pred             cceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          364 CGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      |..           ++..+.......++++|+.||.|++|+
T Consensus       311 H~~-----------~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         311 HDN-----------RVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CSS-----------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCC-----------CEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            754           222222222233588999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.9e-30  Score=230.31  Aligned_cols=248  Identities=15%  Similarity=0.194  Sum_probs=183.5

Q ss_pred             CCcEEEEEEcC--CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           32 VDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        32 ~~~V~~~~fsp--~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      ...|++++|+|  +|++||+|+.||+|+|||+..++....       +            .......+..|.        
T Consensus        63 ~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~-------~------------~~~~~~~~~~~~--------  115 (325)
T d1pgua1          63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS-------V------------EVNVKSEFQVLA--------  115 (325)
T ss_dssp             TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE-------E------------EEEEEEEEECCS--------
T ss_pred             CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceee-------e------------eccccccccccc--------
Confidence            56899999998  578999999999999999977553200       0            011123455677        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEe--CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc-ee
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH-GY  186 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~  186 (432)
                          .+|.+++|  +++++++++++  .++.+.+|+..+++  .+..+..|.           ..+.+++|++++.+ ++
T Consensus       116 ----~~v~~v~~--s~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~-----------~~v~~~~~~~~~~~~~~  176 (325)
T d1pgua1         116 ----GPISDISW--DFEGRRLCVVGEGRDNFGVFISWDSGN--SLGEVSGHS-----------QRINACHLKQSRPMRSM  176 (325)
T ss_dssp             ----SCEEEEEE--CTTSSEEEEEECCSSCSEEEEETTTCC--EEEECCSCS-----------SCEEEEEECSSSSCEEE
T ss_pred             ----CcEEEEEE--CCCCCccceeeccccceEEEEeecccc--cceeeeecc-----------cccccccccccccceEE
Confidence                89999999  89999988875  46789999998876  333444455           78999999999876 55


Q ss_pred             cceeeccceEEEEeecccccceeeEEe--ecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005          187 HLEWTENMATKIANVGNSVHARCQKVY--PHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN  262 (432)
Q Consensus       187 ~~~~~~~~~v~i~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (432)
                      +++.  |+.+++|+..   ..+....+  ...|...|.+++|+|+ +.+++++ .|+.|++||++ .++.+..+      
T Consensus       177 ~~~~--d~~v~~~d~~---~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~-~~~~~~~l------  244 (325)
T d1pgua1         177 TVGD--DGSVVFYQGP---PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK-SGEFLKYI------  244 (325)
T ss_dssp             EEET--TTEEEEEETT---TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT-TCCEEEEC------
T ss_pred             Eeec--cccccccccc---ccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec-cccccccc------
Confidence            6666  9999999987   33333332  1467788999999996 6788888 99999999999 67777765      


Q ss_pred             cCCCCcceEEEEEc---CCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeE--EEEcC
Q 014005          263 MDDLTEVITSAEFH---PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD--IKFAN  337 (432)
Q Consensus       263 ~~~~~~~v~~~~~~---p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~--~~~s~  337 (432)
                       .+|...+.++.|+   |++ ++|++++.|+.|+|||+++++.    ++.+..|..           ...+..  +.+.+
T Consensus       245 -~~~~~~v~~~~~s~~~~dg-~~l~s~s~D~~i~iwd~~~~~~----~~~~~~~~~-----------~~~~~~~~~~~~~  307 (325)
T d1pgua1         245 -EDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTSKC----VQKWTLDKQ-----------QLGNQQVGVVATG  307 (325)
T ss_dssp             -CBTTBCCCSCEEEEEESSS-SEEEEEETTSEEEEEETTTTEE----EEEEECCTT-----------CGGGCEEEEEEEE
T ss_pred             -cccccccccceeeeeccCC-CEEEEEeCCCeEEEEECCCCCE----EEEEEecCC-----------cccCeEEEEEECC
Confidence             6666666555554   677 8999999999999999998876    566665411           223333  44444


Q ss_pred             CCCEEEEe-eCCeEEEEec
Q 014005          338 DGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       338 dg~~l~s~-~~~~i~iwd~  355 (432)
                      ++ +|+++ .||.|++||+
T Consensus       308 ~~-~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         308 NG-RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TT-EEEEEETTSCEEEEET
T ss_pred             CC-EEEEEECCCEEEEEEC
Confidence            44 66676 4599999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3e-29  Score=226.72  Aligned_cols=278  Identities=11%  Similarity=0.188  Sum_probs=203.8

Q ss_pred             ccCCCc-EEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           29 LQDVDI-VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        29 ~~h~~~-V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      -+|.+. |+|++|  +|++||+|+.||+|+|||+.+++                           ++.++.+|+      
T Consensus         9 ~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~---------------------------~~~~l~~H~------   53 (355)
T d1nexb2           9 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK---------------------------FLLQLSGHD------   53 (355)
T ss_dssp             ECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTE---------------------------EEEEEECCS------
T ss_pred             CCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCc---------------------------EEEEEECCC------
Confidence            358776 477766  57899999999999999998865                           447899999      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                            +.|.+++|  +++ .+|++|+.|+.|++|++...............           .......+.+++.+++.
T Consensus        54 ------~~V~~l~~--s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  113 (355)
T d1nexb2          54 ------GGVWALKY--AHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNST-----------VRCLDIVEYKNIKYIVT  113 (355)
T ss_dssp             ------SCEEEEEE--ETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSC-----------EEEEEEEEETTEEEEEE
T ss_pred             ------CCEEEEEE--cCC-CEEEEEeccccccccccccccccccccccccc-----------ccccccccccccceeee
Confidence                  99999999  665 58999999999999999887754443333322           34445667788888888


Q ss_pred             ceeeccceEEEEeeccccccee--------------------eEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 014005          188 LEWTENMATKIANVGNSVHARC--------------------QKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  246 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~--------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~  246 (432)
                      ++.  ++.+++|++........                    .... ..|...+  ..+.++++.++++ .|+.+++||+
T Consensus       114 ~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~  188 (355)
T d1nexb2         114 GSR--DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL-RGHMASV--RTVSGHGNIVVSGSYDNTLIVWDV  188 (355)
T ss_dssp             EET--TSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE-ECCSSCE--EEEEEETTEEEEEETTSCEEEEET
T ss_pred             ecC--CCcEEEEEccCCceeccccccceeccceeccccccceeeee-eeccccc--cccccccceeeeecccceeeeeec
Confidence            888  99999999874211100                    0001 1222233  3345677899999 9999999999


Q ss_pred             CCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeee
Q 014005          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI  326 (432)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~  326 (432)
                      + ..+.+...       .++...+.++.|+|++ ..+++++.|+.|++||++++..    +..+.+|             
T Consensus       189 ~-~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~----~~~~~~h-------------  242 (355)
T d1nexb2         189 A-QMKCLYIL-------SGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGEL----MYTLQGH-------------  242 (355)
T ss_dssp             T-TTEEEEEE-------CCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTCCE----EEEECCC-------------
T ss_pred             c-cccceeee-------eccccccccccccccc-eeeecccccceEEeeecccccc----ccccccc-------------
Confidence            9 56666655       6777889999999999 9999999999999999998876    6788887             


Q ss_pred             ecceeEEEEcCCCCEEEEe-eCCeEEEEec-CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          327 IASISDIKFANDGQHLLSR-DYMNLKVFRY-EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       327 ~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      ...|.+++|++  ++|++| .||.|++||+ ...+.+..|..          ...+..+......++++| .||.|++|+
T Consensus       243 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~g-~d~~i~vwd  309 (355)
T d1nexb2         243 TALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHT----------NLSAITTFYVSDNILVSG-SENQFNIYN  309 (355)
T ss_dssp             SSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEECT----------TCCCCCEEEECSSEEEEE-ETTEEEEEE
T ss_pred             ccccccccccc--ceeeeeecccccccccccccceecccccC----------CceEEEEEcCCCCEEEEE-eCCEEEEEE
Confidence            78899999874  688887 4599999999 55556665543          111111111122235555 589999999


Q ss_pred             c
Q 014005          405 A  405 (432)
Q Consensus       405 ~  405 (432)
                      .
T Consensus       310 ~  310 (355)
T d1nexb2         310 L  310 (355)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.5e-29  Score=227.91  Aligned_cols=289  Identities=11%  Similarity=0.055  Sum_probs=185.5

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      -.|.+.|+++++++  ++|++|+.|++|+|||..+.....                    | .........|.       
T Consensus        11 ~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~--------------------~-~~~~~~~~~~~-------   60 (393)
T d1sq9a_          11 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN--------------------P-KDKSYSHFVHK-------   60 (393)
T ss_dssp             SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC--------------------G-GGGEEEEECCT-------
T ss_pred             CcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCc--------------------c-cceeEeeeecc-------
Confidence            47999999999864  689999999999999977654210                    0 00111122233       


Q ss_pred             hhhhhcceeEEE---EEE-c-CCCCEEEEEeCCCeEEEEEccCccee-eeeecCCCCccccccccccccccccccCCCC-
Q 014005          109 SLEIEEKINRVR---WCA-A-PNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPS-  181 (432)
Q Consensus       109 ~~~~~~~v~~l~---~~~-s-~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  181 (432)
                           ..+..+.   ..+ . .++.++++++.||.|++|++...... .........    .........+..+++.++ 
T Consensus        61 -----~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  131 (393)
T d1sq9a_          61 -----SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL----LDSDMKKHSFWALKWGASN  131 (393)
T ss_dssp             -----TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECC----SCTTGGGSCEEEEEEECCC
T ss_pred             -----CCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccce----eeeccCCCceEEEEEecCC
Confidence                 2222221   111 1 12346788999999999998654311 111100000    001111233444444443 


Q ss_pred             ----CcceecceeeccceEEEEeecccccc------------eeeEEe--ecCCCCCeeEEEeCCCCCEEEEE-cCCeEE
Q 014005          182 ----FAHGYHLEWTENMATKIANVGNSVHA------------RCQKVY--PHAHDFNINSISNNSDCETFVSA-DDLRIN  242 (432)
Q Consensus       182 ----~~~~~~~~~~~~~~v~i~d~~~~~~~------------~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~  242 (432)
                          +.+++.++.  ++.+++|++......            ......  ...+...+++++|+|++ ++++| .|++|+
T Consensus       132 ~~~~~~~~~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~  208 (393)
T d1sq9a_         132 DRLLSHRLVATDV--KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQ  208 (393)
T ss_dssp             ----CEEEEEEET--TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEE
T ss_pred             CcccccEEEEEcC--CCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEE
Confidence                345566665  999999998532100            001111  13455678999999998 88899 999999


Q ss_pred             EEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC---eEEEEEccccccccccceeecccccccCC
Q 014005          243 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGS  319 (432)
Q Consensus       243 lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~~~~  319 (432)
                      +||++ .++.+..++. ...+.+|...|++++|+|++ ++|++|+.|+   .|++||+++++.    +..+.........
T Consensus       209 iwd~~-~~~~~~~~~~-~~~l~~h~~~V~~l~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~----~~~l~~~~~~~~~  281 (393)
T d1sq9a_         209 ISELS-TLRPLYNFES-QHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGER----IGSLSVPTHSSQA  281 (393)
T ss_dssp             EEETT-TTEEEEEEEC-CC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCE----EEEECBC------
T ss_pred             EEeec-cccccccccc-ccccccccceEEEccccccc-ceeeeecCCCCcceeeeccccccee----eeeeccccccccc
Confidence            99999 5666655522 22457899999999999999 9999999887   499999998876    4555432222222


Q ss_pred             ccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec---CcceeEeecce
Q 014005          320 KSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMTLSFCGI  366 (432)
Q Consensus       320 ~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~~  366 (432)
                      ...+.+|.+.|++++|+|||++|+||+ |++|++||+   +++.+++.|..
T Consensus       282 ~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~  332 (393)
T d1sq9a_         282 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD  332 (393)
T ss_dssp             --CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG
T ss_pred             eeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCC
Confidence            334455689999999999999999975 499999999   78888888864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.7e-28  Score=213.38  Aligned_cols=267  Identities=15%  Similarity=0.179  Sum_probs=197.2

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .|...|+|++|  +|++||+|+.||+|+|||+++++                           ++.++.+|+        
T Consensus        13 ~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~---------------------------~~~~l~~H~--------   55 (293)
T d1p22a2          13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE---------------------------CKRILTGHT--------   55 (293)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC---------------------------EEEEECCCS--------
T ss_pred             CCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCc---------------------------EEEEEecCC--------
Confidence            56788999765  79999999999999999998865                           447899999        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                          ..|.+++|    ++++|++|+.|+.|++|++..+..........               .......+....+..+.
T Consensus        56 ----~~V~~v~~----~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~  112 (293)
T d1p22a2          56 ----GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHC---------------EAVLHLRFNNGMMVTCS  112 (293)
T ss_dssp             ----SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEEECCCC---------------SCEEEEECCTTEEEEEE
T ss_pred             ----CCEeeeec----ccceeecccccccccccccccccccccccccc---------------cccccccccccceeecc
Confidence                99999887    57899999999999999998876444332211               11222333444555555


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      .  ++.+.+|+............+ ..|...+..+.+.+  ..++++ .|+.+++||++ ..+.+..+       .++..
T Consensus       113 ~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~-~~~~~~~~-------~~~~~  179 (293)
T d1p22a2         113 K--DRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTS-TCEFVRTL-------NGHKR  179 (293)
T ss_dssp             T--TSCEEEEECSSSSCCEEEEEE-CCCSSCEEEEEEET--TEEEEEETTSEEEEEETT-TCCEEEEE-------ECCSS
T ss_pred             c--ccceeEeeccccccccccccc-cccccccccceecc--cccccccCCCceeeecCC-CCcEEEEE-------ccccc
Confidence            5  889999998865444555555 67888888877765  456666 99999999999 66666655       67777


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-C
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y  347 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~  347 (432)
                      .+..+.++  + ..+++++.||.|++||+++.+.    +..+.+|             ...+.  .+++++.+|++|+ |
T Consensus       180 ~v~~~~~~--~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~-------------~~~v~--~~~~~~~~l~sg~~d  237 (293)
T d1p22a2         180 GIACLQYR--D-RLVVSGSSDNTIRLWDIECGAC----LRVLEGH-------------EELVR--CIRFDNKRIVSGAYD  237 (293)
T ss_dssp             CEEEEEEE--T-TEEEEEETTSCEEEEETTTCCE----EEEECCC-------------SSCEE--EEECCSSEEEEEETT
T ss_pred             ccccccCC--C-CeEEEecCCCEEEEEeccccee----eeeeccc-------------ceeee--eccccceEEEEEcCC
Confidence            78887776  4 6799999999999999998775    5666664             44554  4667888999975 4


Q ss_pred             CeEEEEec------------CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          348 MNLKVFRY------------EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       348 ~~i~iwd~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      |.|++||+            .+++.+..|..           .+..+..+.  .++++|+.||.|++||
T Consensus       238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~-----------~V~~v~~d~--~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSG-----------RVFRLQFDE--FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCEEEEEHHHHTSTTSCTTTTEEEEECCCSS-----------CCCCEEECS--SCEEECCSSSEEEEEC
T ss_pred             CEEEEEECCCCccccccCCceeeEEecCCCC-----------CEEEEEEcC--CEEEEEecCCEEEEeC
Confidence            99999998            12344444442           222222221  2589999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.9e-28  Score=217.48  Aligned_cols=292  Identities=14%  Similarity=0.166  Sum_probs=198.3

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      .-+|++.|.+ +++++|++||||+.||+|+|||+.+++                           ++.++.+|.      
T Consensus        12 l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~---------------------------~~~~~~~h~------   57 (342)
T d2ovrb2          12 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK---------------------------CLRTLVGHT------   57 (342)
T ss_dssp             EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC---------------------------EEEECCCCS------
T ss_pred             ECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC---------------------------EEEEEeCCC------
Confidence            4479988754 356679999999999999999998876                           447889999      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCcccc---------------c--------
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS---------------E--------  164 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---------------~--------  164 (432)
                            ..|.+++|  ++  .+|++++.|+.+++|+....................               +        
T Consensus        58 ------~~V~~v~~--~~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  127 (342)
T d2ovrb2          58 ------GGVWSSQM--RD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG  127 (342)
T ss_dssp             ------SCEEEEEE--ET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSC
T ss_pred             ------CCEEEEEe--CC--CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccc
Confidence                  99999999  55  489999999999999987655332221111100000               0        


Q ss_pred             --cccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeE
Q 014005          165 --NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRI  241 (432)
Q Consensus       165 --~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i  241 (432)
                        ....................++.+..  ++.+++||..   ...++..+ .+|...+..+.+  ++..+++| .|+.|
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~~~d~~---~~~~~~~~-~~~~~~~~~~~~--~~~~l~s~~~dg~i  199 (342)
T d2ovrb2         128 QCLHVLMGHVAAVRCVQYDGRRVVSGAY--DFMVKVWDPE---TETCLHTL-QGHTNRVYSLQF--DGIHVVSGSLDTSI  199 (342)
T ss_dssp             CEEEEEECCSSCEEEEEECSSCEEEEET--TSCEEEEEGG---GTEEEEEE-CCCSSCEEEEEE--CSSEEEEEETTSCE
T ss_pred             cceeeeecccccceeeccccceeeeecC--CCeEEEeecc---cceeeEEE-cCcccccccccC--CCCEEEEEeCCCeE
Confidence              00000000001111222334455554  8899999998   66777777 777776666555  67889999 99999


Q ss_pred             EEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCcc
Q 014005          242 NLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS  321 (432)
Q Consensus       242 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~  321 (432)
                      ++||++ ..+.+..+       .+|...+.++.+++   ++|++++.||.|++||+...+.    ...+..|.       
T Consensus       200 ~~~d~~-~~~~~~~~-------~~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~----~~~~~~~~-------  257 (342)
T d2ovrb2         200 RVWDVE-TGNCIHTL-------TGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQC----LQTLQGPN-------  257 (342)
T ss_dssp             EEEETT-TCCEEEEE-------CCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCE----EEEECSTT-------
T ss_pred             EEeecc-cceeeeEe-------cccccceeEEecCC---CEEEEEcCCCEEEEEecccccc----cccccccc-------
Confidence            999999 66677665       78888898887764   6899999999999999987765    34554420       


Q ss_pred             ceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeeccc
Q 014005          322 FFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYL  397 (432)
Q Consensus       322 ~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  397 (432)
                         .|...+.++.++  +.++++|+ ||+|++||+   +.++++.....      .-....+..+..+.....+++|+.|
T Consensus       258 ---~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~------~~~~~~v~~v~~s~~~~~la~g~~d  326 (342)
T d2ovrb2         258 ---KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES------GGSGGVVWRIRASNTKLVCAVGSRN  326 (342)
T ss_dssp             ---SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT------GGGTCEEEEEEECSSEEEEEEECSS
T ss_pred             ---eeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccC------CCCCCCEEEEEECCCCCEEEEEeCC
Confidence               124566666665  56888875 499999999   55666543221      0012233333334445578899888


Q ss_pred             ce----eeeec
Q 014005          398 IN----LSALS  404 (432)
Q Consensus       398 ~~----i~~~~  404 (432)
                      |.    |.+||
T Consensus       327 Gt~~~~l~~~D  337 (342)
T d2ovrb2         327 GTEETKLLVLD  337 (342)
T ss_dssp             SSSCCEEEEEE
T ss_pred             CCCeeEEEEEe
Confidence            84    88888

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=3.2e-28  Score=215.51  Aligned_cols=266  Identities=12%  Similarity=0.093  Sum_probs=189.1

Q ss_pred             hhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccccc
Q 014005            5 REEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFT   84 (432)
Q Consensus         5 ~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   84 (432)
                      +..+.....|.+..  ++........|.+.|++++|+|+|+++ +++.|+.+++|+.......                 
T Consensus        30 ~s~Dg~v~vWd~~~--~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~-----------------   89 (299)
T d1nr0a2          30 ADAEGHINSWDIST--GISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVD-----------------   89 (299)
T ss_dssp             EETTSCEEEEETTT--CCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSC-----------------
T ss_pred             EcCCCeEEEEECCC--CcEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEEeccCCcccc-----------------
Confidence            34455667787653  111111123578899999999999855 5567899999998764321                 


Q ss_pred             ccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccc
Q 014005           85 STSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSE  164 (432)
Q Consensus        85 ~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  164 (432)
                             ........+.            ..+.+++|  +++++.+++++ ++.+++|+.....  ....          
T Consensus        90 -------~~~~~~~~~~------------~~~~~~~~--s~~g~~~~~~~-~~~i~~~~~~~~~--~~~~----------  135 (299)
T d1nr0a2          90 -------SSKAVANKLS------------SQPLGLAV--SADGDIAVAAC-YKHIAIYSHGKLT--EVPI----------  135 (299)
T ss_dssp             -------TTSCCEEECS------------SCEEEEEE--CTTSSCEEEEE-SSEEEEEETTEEE--EEEC----------
T ss_pred             -------cccccccccc------------cccccccc--ccccccccccc-ccccccccccccc--cccc----------
Confidence                   0111223444            77889999  88998776665 5789999854322  1111          


Q ss_pred             cccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEE
Q 014005          165 NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL  243 (432)
Q Consensus       165 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~l  243 (432)
                           ...+.+++++|++.++++++.  ++.+++||++   ...........|...|.+++|+|++++++++ .|+.|++
T Consensus       136 -----~~~~~~~~~s~~~~~l~~g~~--dg~i~~~d~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~  205 (299)
T d1nr0a2         136 -----SYNSSCVALSNDKQFVAVGGQ--DSKVHVYKLS---GASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIP  205 (299)
T ss_dssp             -----SSCEEEEEECTTSCEEEEEET--TSEEEEEEEE---TTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             -----ccccccccccccccccccccc--cccccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence                 134667889999999999988  9999999998   4444433335788999999999999999999 9999999


Q ss_pred             EeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005          244 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (432)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~  323 (432)
                      ||+. .+.....    ...+.+|...|++++|+|++ ++|++|+.||.|++||++++....  ......|          
T Consensus       206 ~~~~-~~~~~~~----~~~~~~h~~~v~~l~~s~~~-~~l~sgs~dg~i~iwd~~~~~~~~--~~~~~~~----------  267 (299)
T d1nr0a2         206 YSVA-NNFELAH----TNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPSDHP--IIIKGAH----------  267 (299)
T ss_dssp             EEGG-GTTEESC----CCCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTTSCC--EEETTSS----------
T ss_pred             cccc-ccccccc----cccccccccccccccccccc-cceEEEcCCCEEEEEECCCCCcce--EEEecCC----------
Confidence            9998 3333321    12447789999999999999 999999999999999998765321  1222222          


Q ss_pred             eeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          324 TEIIASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       324 ~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                        +...+..+.| +++++|++| .|+.|++||+
T Consensus       268 --~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         268 --AMSSVNSVIW-LNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             --TTSCEEEEEE-EETTEEEEEETTSCEEEEEC
T ss_pred             --CCCcEEEEEE-CCCCEEEEEeCCCEEEEEec
Confidence              1345666655 556788886 5599999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=8.1e-28  Score=215.76  Aligned_cols=317  Identities=9%  Similarity=0.018  Sum_probs=201.0

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ..|.+.|++|+|+|+|++||+|+.||+|+|||++.+...                        .......+|.       
T Consensus         8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~------------------------~~~~~~~~h~-------   56 (342)
T d1yfqa_           8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN------------------------VDLLQSLRYK-------   56 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE------------------------EEEEEEEECS-------
T ss_pred             CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc------------------------eEEEEecCCC-------
Confidence            468999999999999999999999999999999876421                        1223344688       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           ..|.+++|+| +++.+|++|+.|+.|++|++..+...........            .......+.++...++.+
T Consensus        57 -----~~V~~v~f~~-~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~  118 (342)
T d1yfqa_          57 -----HPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEA------------NLGICRICKYGDDKLIAA  118 (342)
T ss_dssp             -----SCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSEEECBSCCC------------CSCEEEEEEETTTEEEEE
T ss_pred             -----CCEEEEEEeC-CCCCEEEEcccccceeeeeccccccccccccccc------------cccccccccccccccccc
Confidence                 9999999953 3456899999999999999987764333222211            122333445566677777


Q ss_pred             eeeccceEEEEeecccccce-eeEEeecC--CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcC
Q 014005          189 EWTENMATKIANVGNSVHAR-CQKVYPHA--HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD  264 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~  264 (432)
                      +.  ++.+++||++...... ..... ..  .........+.+.+..++++ .|+.|++||++.........     ...
T Consensus       119 ~~--~~~~~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-----~~~  190 (342)
T d1yfqa_         119 SW--DGLIEVIDPRNYGDGVIAVKNL-NSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI-----EES  190 (342)
T ss_dssp             ET--TSEEEEECHHHHTTBCEEEEES-CSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEE-----EEC
T ss_pred             cc--ccccceeeccccccceeeeccc-ccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceee-----eec
Confidence            76  9999999987432222 22222 12  22344566777888899999 99999999998333222111     113


Q ss_pred             CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccccc--ceeecccccccCCccceeeeecceeEEEEcCCCCEE
Q 014005          265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS--ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL  342 (432)
Q Consensus       265 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  342 (432)
                      .+...+.+..+.+.....+++++.||.+.+|+..........  ...+..+    ........+...+++++|+|++++|
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~l~~sp~~~~l  266 (342)
T d1yfqa_         191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH----RLNLKDTNLAYPVNSIEFSPRHKFL  266 (342)
T ss_dssp             SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC----CCCTTCCSSCCCEEEEEECTTTCCE
T ss_pred             ccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee----eeccCCCcccccceeEEecCCccEE
Confidence            344456666666654489999999999999998754321110  0111110    0011122346689999999999999


Q ss_pred             EEee-CCeEEEEec---CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC-CeeeecCCCce
Q 014005          343 LSRD-YMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG-MDSILQPDPIA  417 (432)
Q Consensus       343 ~s~~-~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~-~~~~~~~~~~~  417 (432)
                      |+|+ ||.|++||+   +.+..+..+..          .....+..+..  .+++++.|+.+++|..- ......++++.
T Consensus       267 asg~~Dg~v~vWD~~~~~~l~~~~~~~~----------~~~~~~s~~~~--~l~~a~sdd~~~~~~~~~~~~~~~~~~i~  334 (342)
T d1yfqa_         267 YTAGSDGIISCWNLQTRKKIKNFAKFNE----------DSVVKIACSDN--ILCLATSDDTFKTNAAIDQTIELNASSIY  334 (342)
T ss_dssp             EEEETTSCEEEEETTTTEEEEECCCCSS----------SEEEEEEECSS--EEEEEEECTHHHHCSSSCTTSCCCCCEEE
T ss_pred             EEECCCCEEEEEECCCCcEEEEecCCCC----------CEEEEEEeCCC--EEEEEEcCCcEEEeeeeCCCccCCCCeEE
Confidence            9975 599999999   34444432211          11222222222  35566677788888743 33334444433


Q ss_pred             E
Q 014005          418 I  418 (432)
Q Consensus       418 ~  418 (432)
                      .
T Consensus       335 ~  335 (342)
T d1yfqa_         335 I  335 (342)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.5e-29  Score=219.76  Aligned_cols=248  Identities=12%  Similarity=0.045  Sum_probs=171.9

Q ss_pred             cccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      ..+|.++|++++|+|    |++|+.||+|++||+.++                                .++|.      
T Consensus         9 l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------------------------------~~~h~------   46 (287)
T d1pgua2           9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------------------------------HQDHS------   46 (287)
T ss_dssp             ECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------------------------------ECCCC------
T ss_pred             ECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------------------------------CCCCC------
Confidence            346999999999997    999999999999997653                                34666      


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcce----eeeeecCCCCccc----------------ccccc
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV----KKIKEMDHFPFVS----------------SENTL  167 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~----------------~~~~~  167 (432)
                            ..|.++.+  +++ ..+++++.|+++++|++...+.    ...........+.                .+...
T Consensus        47 ------~~V~~~~~--~~~-~~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (287)
T d1pgua2          47 ------NLIVSLDN--SKA-QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV  117 (287)
T ss_dssp             ------SCEEEEEC--CST-TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ------CCEEEEEe--cCC-CeEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeec
Confidence                  77777777  444 4567777778888877653321    1100000000000                00000


Q ss_pred             ccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 014005          168 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL  246 (432)
Q Consensus       168 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~  246 (432)
                        .......++++++..++.+.. .++.+++|++.   .......+...+...+.+++|+|++.+|++| .||.|++||+
T Consensus       118 --~~~~~~~~~~~~~~~~~v~~~-~~~~v~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~  191 (287)
T d1pgua2         118 --RLNSPGSAVSLSQNYVAVGLE-EGNTIQVFKLS---DLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDL  191 (287)
T ss_dssp             --ECSSCEEEEEECSSEEEEEET-TTSCEEEEETT---EEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             --cccceeeeeeccCcceeeecc-ccceeeeeecc---ccceeeeeeeccCCceeEEEeccCccccccccccccccceee
Confidence              001112234455555555544 13579999987   4444444435678899999999999999999 9999999999


Q ss_pred             CCCCceeeEeecCCCCcCCCCcceEEEEEcCCC---------CcEEEEEeCCCeEEEEEccccccccccceeeccccccc
Q 014005          247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY---------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH  317 (432)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~  317 (432)
                      . .+.....      .+..|...|++++|+|.+         ..+|++|+.|+.|++||++++...   +..+.+|    
T Consensus       192 ~-~~~~~~~------~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~---~~~~~~h----  257 (287)
T d1pgua2         192 Q-SREVKTS------RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI---IKALNAH----  257 (287)
T ss_dssp             T-TTEEEEC------CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC---EEETTSS----
T ss_pred             c-ccccccc------cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE---EEEeCCC----
Confidence            8 4443321      237899999999998753         268999999999999999864432   5677777    


Q ss_pred             CCccceeeeecceeEEEEcCCCCEEEEeeCCeEEEEec
Q 014005          318 GSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       318 ~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                               ...|++++|+|+++++.+|.|++|++||+
T Consensus       258 ---------~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         258 ---------KDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             ---------TTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             ---------CCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence                     78999999999986555567799999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.6e-27  Score=215.22  Aligned_cols=310  Identities=13%  Similarity=0.098  Sum_probs=206.6

Q ss_pred             chhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccc
Q 014005            4 NREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF   83 (432)
Q Consensus         4 ~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   83 (432)
                      .+..+.....|++...   +.......|.+.|++++|+|+ .+|++|+.|++|++|+....+..                
T Consensus        28 tgs~Dg~i~vWd~~~~---~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~----------------   87 (355)
T d1nexb2          28 TGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCT----------------   87 (355)
T ss_dssp             EEETTTEEEEEETTTT---EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEE----------------
T ss_pred             EEeCCCeEEEEECCCC---cEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccc----------------
Confidence            3455566778876521   112233468999999999985 58999999999999998876522                


Q ss_pred             cccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccc-
Q 014005           84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS-  162 (432)
Q Consensus        84 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-  162 (432)
                                 .....+...          .......+  .+++.++++++.|+.|++||+.+................ 
T Consensus        88 -----------~~~~~~~~~----------~~~~~~~~--~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  144 (355)
T d1nexb2          88 -----------HVFEGHNST----------VRCLDIVE--YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF  144 (355)
T ss_dssp             -----------EEECCCSSC----------EEEEEEEE--ETTEEEEEEEETTSEEEEEECCC-----------CCCEEE
T ss_pred             -----------ccccccccc----------cccccccc--ccccceeeeecCCCcEEEEEccCCceeccccccceeccce
Confidence                       222222200          33444555  788999999999999999999876422211110000000 


Q ss_pred             -------cccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE
Q 014005          163 -------SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS  235 (432)
Q Consensus       163 -------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  235 (432)
                             ...............+.+++..++.+..  ++.+++||+.   ..+.+... .++...+.++.++|++..+++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--d~~i~~~d~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  218 (355)
T d1nexb2         145 HTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY--DNTLIVWDVA---QMKCLYIL-SGHTDRIYSTIYDHERKRCIS  218 (355)
T ss_dssp             SCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEET--TSCEEEEETT---TTEEEEEE-CCCSSCEEEEEEETTTTEEEE
T ss_pred             eccccccceeeeeeeccccccccccccceeeeecc--cceeeeeecc---cccceeee-eccccccccccccccceeeec
Confidence                   0000000001111223445666777666  8999999998   66777777 788889999999999999999


Q ss_pred             E-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccc
Q 014005          236 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA  314 (432)
Q Consensus       236 ~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~  314 (432)
                      + .|+.|++||++ .+..+..+       .+|...|.++++++   ++|++|+.||.|++||++++.      +.+..| 
T Consensus       219 ~~~d~~i~i~d~~-~~~~~~~~-------~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~------~~~~~~-  280 (355)
T d1nexb2         219 ASMDTTIRIWDLE-NGELMYTL-------QGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYS------RKFSYH-  280 (355)
T ss_dssp             EETTSCEEEEETT-TCCEEEEE-------CCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCC------EEEEEE-
T ss_pred             ccccceEEeeecc-cccccccc-------cccccccccccccc---ceeeeeecccccccccccccc------eecccc-
Confidence            9 99999999999 66666665       78999999999874   689999999999999998754      445554 


Q ss_pred             cccCCccceeeeecceeE-EEEcCCCCEEEEeeCCeEEEEec---Cccee-EeecceeeeehhhhhcccccccccceeeE
Q 014005          315 ESHGSKSFFTEIIASISD-IKFANDGQHLLSRDYMNLKVFRY---EPVMT-LSFCGIYVWILRQLQHSRFMSIYALSCVI  389 (432)
Q Consensus       315 ~~~~~~~~~~~~~~~v~~-~~~s~dg~~l~s~~~~~i~iwd~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (432)
                                  ...+.. ..+++++++|++|+|+.|++||+   +++.. +..|..           ++..+..+.. .
T Consensus       281 ------------~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~-----------~V~~v~~~~~-~  336 (355)
T d1nexb2         281 ------------HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD-----------QIWSVNFKGK-T  336 (355)
T ss_dssp             ------------CTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCS-----------EEEEEEEETT-E
T ss_pred             ------------cCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCC-----------CEEEEEEcCC-e
Confidence                        344444 45688899999999999999999   34432 222322           2222222222 3


Q ss_pred             EEEeecccceeeeec
Q 014005          390 YIITTLYLINLSALS  404 (432)
Q Consensus       390 ~~~~g~~~~~i~~~~  404 (432)
                      .+++|+.||.+.+|.
T Consensus       337 ~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         337 LVAAVEKDGQSFLEI  351 (355)
T ss_dssp             EEEEEESSSCEEEEE
T ss_pred             EEEEEECCCcEEEEE
Confidence            578889999876654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.7e-25  Score=205.95  Aligned_cols=249  Identities=13%  Similarity=0.107  Sum_probs=169.8

Q ss_pred             CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEE
Q 014005           44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA  123 (432)
Q Consensus        44 g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~  123 (432)
                      +.++++++.||.|++|++.......                           .+..+.  ...+.....+..+..++|.+
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~---------------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~  129 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETK---------------------------KVIFEK--LDLLDSDMKKHSFWALKWGA  129 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTC---------------------------CEEEEE--ECCSCTTGGGSCEEEEEEEC
T ss_pred             CcEEEEEeCCCcEEEEEccCCCcee---------------------------eeeccc--cceeeeccCCCceEEEEEec
Confidence            3568899999999999987654320                           000000  00001111125677888843


Q ss_pred             cC---CCCEEEEEeCCCeEEEEEccCcceeeee-ecCCCCc--c--ccccccccccccccccCCCCCcceecceeeccce
Q 014005          124 AP---NGSMFILSTNDKTIKLWKVRDQKVKKIK-EMDHFPF--V--SSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA  195 (432)
Q Consensus       124 s~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  195 (432)
                      ..   .+.++++++.||.+++|++......... .......  +  ...........+.+++|+|++ ++++|+.  |+.
T Consensus       130 ~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~--Dg~  206 (393)
T d1sq9a_         130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN--NGT  206 (393)
T ss_dssp             CC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT--TSE
T ss_pred             CCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeC--CCc
Confidence            22   2568999999999999998532100000 0000000  0  000011123557889999987 7778877  999


Q ss_pred             EEEEeecccccceeeEEee-----cCCCCCeeEEEeCCCCCEEEEE-cCC---eEEEEeCCCCCceeeEeecCC------
Q 014005          196 TKIANVGNSVHARCQKVYP-----HAHDFNINSISNNSDCETFVSA-DDL---RINLWNLEISDQCFNIVDMKP------  260 (432)
Q Consensus       196 v~i~d~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~-~d~---~i~lwd~~~~~~~~~~~~~~~------  260 (432)
                      |++||+.   +.+++..+.     .+|...|++++|+|++++|++| .|+   .|++||++ .+..+..+....      
T Consensus       207 i~iwd~~---~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~-~g~~~~~l~~~~~~~~~~  282 (393)
T d1sq9a_         207 VQISELS---TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE-FGERIGSLSVPTHSSQAS  282 (393)
T ss_dssp             EEEEETT---TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT-TCCEEEEECBC-------
T ss_pred             EEEEeec---ccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccc-cceeeeeeccccccccce
Confidence            9999998   555554431     4688999999999999999999 776   48999999 666666553211      


Q ss_pred             CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeeccee----EEEEc
Q 014005          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS----DIKFA  336 (432)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~----~~~~s  336 (432)
                      ..+.+|.+.|++++|+|++ ++|++|+.|++|++||+++++.    +.++++|             ...|.    .++|+
T Consensus       283 ~~~~gH~~~V~~l~fspd~-~~l~S~s~D~~v~vWd~~~g~~----~~~l~gH-------------~~~v~~~~~~~~~~  344 (393)
T d1sq9a_         283 LGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKER----ITTLNMH-------------CDDIEIEEDILAVD  344 (393)
T ss_dssp             -CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE----EEEEECC-------------GGGCSSGGGCCCBC
T ss_pred             eeeecccCceeeeccCCCC-CeeEEECCCCEEEEEECCCCCE----EEEECCc-------------CCcccCCccEEEEC
Confidence            1346899999999999999 9999999999999999999986    7889998             45554    58899


Q ss_pred             CCCCEEEEee
Q 014005          337 NDGQHLLSRD  346 (432)
Q Consensus       337 ~dg~~l~s~~  346 (432)
                      |+|..+++++
T Consensus       345 ~~~~~~~~~~  354 (393)
T d1sq9a_         345 EHGDSLAEPG  354 (393)
T ss_dssp             TTSCBCSSCC
T ss_pred             CCCCEEEEcc
Confidence            9999887654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=3e-24  Score=194.47  Aligned_cols=189  Identities=14%  Similarity=0.137  Sum_probs=154.2

Q ss_pred             EEEEcC-CCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcc
Q 014005           37 AIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK  115 (432)
Q Consensus        37 ~~~fsp-~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~  115 (432)
                      .-.||| ||+++|+++. |.|.+||.+++...                            . .+|.            ..
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~----------------------------~-~~~~------------~~   44 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVL----------------------------K-VPEP------------LR   44 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEE----------------------------E-CSCC------------SC
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcEE----------------------------E-ccCC------------CC
Confidence            467999 9999999865 79999999876521                            2 2677            89


Q ss_pred             eeEEEEEEcCCCCEEEEEeCCC--eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          116 INRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       116 v~~l~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      |.+++|  +|||++|++++.+.  .|++||+.+++...+..   +.           ..+..++|+|++++++.+..  +
T Consensus        45 v~~~~~--spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~---~~-----------~~v~~~~~spdg~~l~~~~~--~  106 (360)
T d1k32a3          45 IRYVRR--GGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE---NL-----------GNVFAMGVDRNGKFAVVAND--R  106 (360)
T ss_dssp             EEEEEE--CSSSEEEEEEEETTEEEEEEEETTTCCEEECCC---CC-----------CSEEEEEECTTSSEEEEEET--T
T ss_pred             EEEEEE--CCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeC---CC-----------ceEEeeeecccccccceecc--c
Confidence            999999  99999998876553  79999999887665433   33           78899999999999999988  9


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-----------cCCeEEEEeCCCCCceeeEeecCCCC
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----------DDLRINLWNLEISDQCFNIVDMKPSN  262 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-----------~d~~i~lwd~~~~~~~~~~~~~~~~~  262 (432)
                      +.+.+|+..   ..++...+ ..+...+.+++|+|+|++|+.+           .++.+++||+. .++....       
T Consensus       107 ~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~-~~~~~~~-------  174 (360)
T d1k32a3         107 FEIMTVDLE---TGKPTVIE-RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME-GRKIFAA-------  174 (360)
T ss_dssp             SEEEEEETT---TCCEEEEE-ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT-TTEEEEC-------
T ss_pred             ccccccccc---ccceeeee-ecccccccchhhccceeeeeeeccccccceeeccccceeeeccc-cCceeee-------
Confidence            999999998   66666776 7788899999999999999854           24468999998 4544332       


Q ss_pred             cCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005          263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (432)
Q Consensus       263 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~  299 (432)
                       ..+...+..++|+|+| +.|++++.++.+++||...
T Consensus       175 -~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         175 -TTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             -SCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSS
T ss_pred             -cccccccccccccCCC-CEEEEEeCCCceEcccccc
Confidence             4566778999999999 9999999999999998653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.6e-23  Score=185.30  Aligned_cols=299  Identities=13%  Similarity=0.159  Sum_probs=187.9

Q ss_pred             cchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhh---c
Q 014005            3 LNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELE---K   79 (432)
Q Consensus         3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~---~   79 (432)
                      +++..+.....|++..  + +.......|.+.|++++|+|+  +|++|+.|+.+++|+..................   .
T Consensus        31 ~sgs~Dg~i~vWd~~~--~-~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (342)
T d2ovrb2          31 VSGSDDNTLKVWSAVT--G-KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL  105 (342)
T ss_dssp             EEEETTSCEEEEETTT--C-CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             EEEeCCCeEEEEECCC--C-CEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeec
Confidence            3445556677887652  1 112233468999999999874  899999999999999876543211000000000   0


Q ss_pred             cccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCC
Q 014005           80 QMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP  159 (432)
Q Consensus        80 ~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  159 (432)
                      ......... ....+..+......  ....+.. .......+  ......+++++.|+.|++||........  .+..+.
T Consensus       106 ~~~~~~~~~-~d~~i~~~~~~~~~--~~~~~~~-~~~~~~~~--~~~~~~~~~~~~d~~i~~~d~~~~~~~~--~~~~~~  177 (342)
T d2ovrb2         106 HEKRVVSGS-RDATLRVWDIETGQ--CLHVLMG-HVAAVRCV--QYDGRRVVSGAYDFMVKVWDPETETCLH--TLQGHT  177 (342)
T ss_dssp             ETTEEEEEE-TTSEEEEEESSSCC--EEEEEEC-CSSCEEEE--EECSSCEEEEETTSCEEEEEGGGTEEEE--EECCCS
T ss_pred             ccccccccc-cceeEEEeeccccc--ceeeeec-ccccceee--ccccceeeeecCCCeEEEeecccceeeE--EEcCcc
Confidence            000000000 00000000000000  0000000 11122223  3456688999999999999998766332  222222


Q ss_pred             ccccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cC
Q 014005          160 FVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD  238 (432)
Q Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d  238 (432)
                                   .....+.+++.++++++.  |+.|++||++   ..++++.+ .+|...+.++++++  ++++++ .|
T Consensus       178 -------------~~~~~~~~~~~~l~s~~~--dg~i~~~d~~---~~~~~~~~-~~~~~~v~~~~~~~--~~l~s~s~d  236 (342)
T d2ovrb2         178 -------------NRVYSLQFDGIHVVSGSL--DTSIRVWDVE---TGNCIHTL-TGHQSLTSGMELKD--NILVSGNAD  236 (342)
T ss_dssp             -------------SCEEEEEECSSEEEEEET--TSCEEEEETT---TCCEEEEE-CCCCSCEEEEEEET--TEEEEEETT
T ss_pred             -------------cccccccCCCCEEEEEeC--CCeEEEeecc---cceeeeEe-cccccceeEEecCC--CEEEEEcCC
Confidence                         223344557788888888  9999999998   67788888 78999998888765  689999 99


Q ss_pred             CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccC
Q 014005          239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG  318 (432)
Q Consensus       239 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~  318 (432)
                      +.|++||+. ..+....+    .....|...+.++.+++   +++++|+.||.|++||+++++.    ++.+... ..  
T Consensus       237 ~~i~iwd~~-~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~----i~~~~~~-~~--  301 (342)
T d2ovrb2         237 STVKIWDIK-TGQCLQTL----QGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEF----IRNLVTL-ES--  301 (342)
T ss_dssp             SCEEEEETT-TCCEEEEE----CSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCE----EEEEEEC-TT--
T ss_pred             CEEEEEecc-cccccccc----cccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCE----EEEEecc-cC--
Confidence            999999998 44444443    12245667777777754   6899999999999999999886    4554321 00  


Q ss_pred             CccceeeeecceeEEEEcCCCCEEEEeeC-C----eEEEEec
Q 014005          319 SKSFFTEIIASISDIKFANDGQHLLSRDY-M----NLKVFRY  355 (432)
Q Consensus       319 ~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~----~i~iwd~  355 (432)
                           ..|...|++++|+|++.+||+|++ |    .|++||+
T Consensus       302 -----~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df  338 (342)
T d2ovrb2         302 -----GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF  338 (342)
T ss_dssp             -----GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             -----CCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeC
Confidence                 012578999999999999999854 6    4999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1e-23  Score=185.07  Aligned_cols=235  Identities=10%  Similarity=0.083  Sum_probs=159.7

Q ss_pred             cceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccc
Q 014005           91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE  170 (432)
Q Consensus        91 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (432)
                      .+++++++||.            ++|++++|  +|    |++|+.||+|++||+.++.       ..|.           
T Consensus         3 ~~~i~~l~gH~------------~~I~~l~~--s~----l~sgs~Dg~v~~Wd~~~~~-------~~h~-----------   46 (287)
T d1pgua2           3 DEVLKTISGHN------------KGITALTV--NP----LISGSYDGRIMEWSSSSMH-------QDHS-----------   46 (287)
T ss_dssp             EEEEEEECCCS------------SCEEEEET--TT----TEEEETTSCEEETTTTEEE-------CCCC-----------
T ss_pred             cceeEEECCCC------------CceEEEEE--Cc----EEEEeCCCeEEEEECCCCC-------CCCC-----------
Confidence            35678999999            99999999  65    9999999999999987643       1222           


Q ss_pred             cccccccCCCCCcceecceeeccceEEEEeecccc-------------------------------cceeeEEeecCCCC
Q 014005          171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV-------------------------------HARCQKVYPHAHDF  219 (432)
Q Consensus       171 ~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~-------------------------------~~~~~~~~~~~~~~  219 (432)
                      ..|.+++++++. .+++++.  |+.+++|++....                               .......+  ....
T Consensus        47 ~~V~~~~~~~~~-~~~s~s~--D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  121 (287)
T d1pgua2          47 NLIVSLDNSKAQ-EYSSISW--DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV--RLNS  121 (287)
T ss_dssp             SCEEEEECCSTT-CCEEEET--TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE--ECSS
T ss_pred             CCEEEEEecCCC-eEEEEee--ccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeec--cccc
Confidence            567777776554 3455555  6777777654210                               11112221  1112


Q ss_pred             CeeEEEeCCCCCEEEEE-c-CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 014005          220 NINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM  297 (432)
Q Consensus       220 ~i~~~~~~~~~~~l~~~-~-d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~  297 (432)
                        ...++++++..++++ . ++.+++|++. .......+      ...|...+++++|+|++ .+|++|+.||.|++||+
T Consensus       122 --~~~~~~~~~~~~~v~~~~~~~v~~~~~~-~~~~~~~~------~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~  191 (287)
T d1pgua2         122 --PGSAVSLSQNYVAVGLEEGNTIQVFKLS-DLEVSFDL------KTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDL  191 (287)
T ss_dssp             --CEEEEEECSSEEEEEETTTSCEEEEETT-EEEEEEEC------SSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEET
T ss_pred             --eeeeeeccCcceeeeccccceeeeeecc-ccceeeee------eeccCCceeEEEeccCc-cccccccccccccceee
Confidence              234556677777776 4 4579999987 33322221      24577789999999999 99999999999999999


Q ss_pred             cccccccccceeecccccccCCccceeeeecceeEEEEcCC----------CCEEEEee-CCeEEEEec-C---cceeEe
Q 014005          298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND----------GQHLLSRD-YMNLKVFRY-E---PVMTLS  362 (432)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~d----------g~~l~s~~-~~~i~iwd~-~---~~~~~~  362 (432)
                      .+++..   ...+..|             ...|.+++|+|+          +.+|++|+ |++|++||+ +   .+..+.
T Consensus       192 ~~~~~~---~~~~~~h-------------~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~  255 (287)
T d1pgua2         192 QSREVK---TSRWAFR-------------TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN  255 (287)
T ss_dssp             TTTEEE---ECCSCCC-------------SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT
T ss_pred             cccccc---ccccccc-------------ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeC
Confidence            987642   2345565             788999999875          46899875 599999999 3   333333


Q ss_pred             ecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          363 FCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      .|..           .+..+...... .+++++.|+.|++|+
T Consensus       256 ~h~~-----------~V~~v~~~~~~-~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         256 AHKD-----------GVNNLLWETPS-TLVSSGADACIKRWN  285 (287)
T ss_dssp             SSTT-----------CEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             CCCC-----------CeEEEEECCCC-EEEEEECCCeEEEEE
Confidence            3432           33333222221 478889999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-22  Score=177.26  Aligned_cols=257  Identities=12%  Similarity=0.164  Sum_probs=179.3

Q ss_pred             cchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhcccc
Q 014005            3 LNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMD   82 (432)
Q Consensus         3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   82 (432)
                      +++..+.....|.+...   +.......|.+.|++++|  ++++|++|+.|+.|++|++..+...               
T Consensus        29 ~sgs~Dg~i~vWd~~~~---~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~---------------   88 (293)
T d1p22a2          29 VSGLRDNTIKIWDKNTL---ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML---------------   88 (293)
T ss_dssp             EEEESSSCEEEEESSSC---CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE---------------
T ss_pred             EEEeCCCeEEEEECCCC---cEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccc---------------
Confidence            34455666778876521   112223368999999987  5789999999999999999886532               


Q ss_pred             ccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCccee-eeeecCCCCcc
Q 014005           83 FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFV  161 (432)
Q Consensus        83 ~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~  161 (432)
                                  .....+.              .....+  .+....++++..++.+.+|+....... .......+.  
T Consensus        89 ------------~~~~~~~--------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  138 (293)
T d1p22a2          89 ------------NTLIHHC--------------EAVLHL--RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR--  138 (293)
T ss_dssp             ------------EEECCCC--------------SCEEEE--ECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS--
T ss_pred             ------------ccccccc--------------cccccc--cccccceeecccccceeEeeccccccccccccccccc--
Confidence                        2222222              222333  356678999999999999999866522 222222222  


Q ss_pred             ccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe
Q 014005          162 SSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR  240 (432)
Q Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~  240 (432)
                               ..+....+.  ...+..++.  |+.+++||.+   ..+++..+ .++...+..+.++  +..++++ .|+.
T Consensus       139 ---------~~v~~~~~~--~~~~~~~s~--d~~i~~~d~~---~~~~~~~~-~~~~~~v~~~~~~--~~~l~~~~~dg~  199 (293)
T d1p22a2         139 ---------AAVNVVDFD--DKYIVSASG--DRTIKVWNTS---TCEFVRTL-NGHKRGIACLQYR--DRLVVSGSSDNT  199 (293)
T ss_dssp             ---------SCEEEEEEE--TTEEEEEET--TSEEEEEETT---TCCEEEEE-ECCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred             ---------cccccceec--ccccccccC--CCceeeecCC---CCcEEEEE-cccccccccccCC--CCeEEEecCCCE
Confidence                     344443333  334445554  8999999998   67778877 7888888887775  4678888 9999


Q ss_pred             EEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccc-----ccceeeccccc
Q 014005          241 INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-----HSARILRDAAE  315 (432)
Q Consensus       241 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~h~~  315 (432)
                      |++||++ ....+...       .++...+..  +++++ .+|++|+.||.|++||+++.....     ..++.+.+|  
T Consensus       200 i~i~d~~-~~~~~~~~-------~~~~~~v~~--~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H--  266 (293)
T d1p22a2         200 IRLWDIE-CGACLRVL-------EGHEELVRC--IRFDN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--  266 (293)
T ss_dssp             EEEEETT-TCCEEEEE-------CCCSSCEEE--EECCS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--
T ss_pred             EEEEecc-cceeeeee-------cccceeeee--ccccc-eEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCC--
Confidence            9999999 56666655       667777764  55666 899999999999999988643211     113555565  


Q ss_pred             ccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEe
Q 014005          316 SHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFR  354 (432)
Q Consensus       316 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd  354 (432)
                                 .+.|.+++|+  +++|++| .||+|++||
T Consensus       267 -----------~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         267 -----------SGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             -----------SSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             -----------CCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence                       7899999995  6689987 459999998

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.5e-23  Score=187.63  Aligned_cols=280  Identities=11%  Similarity=0.020  Sum_probs=184.6

Q ss_pred             hhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCC-CEEEEecccceEEEEEecCCcCCCCccccchhhhccccc
Q 014005            5 REEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF   83 (432)
Q Consensus         5 ~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   83 (432)
                      +..+.....|++..............|.+.|++++|+|++ .+|++|+.||.|++|+.......                
T Consensus        29 ~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~----------------   92 (342)
T d1yfqa_          29 TSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF----------------   92 (342)
T ss_dssp             EETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE----------------
T ss_pred             EECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccc----------------
Confidence            3445567778765321111122334799999999999864 58999999999999999876532                


Q ss_pred             cccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeee--eecCCCCcc
Q 014005           84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKI--KEMDHFPFV  161 (432)
Q Consensus        84 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~  161 (432)
                                 .....+..           .......+  .++...+++++.|+.+++||++.+.....  .....+.  
T Consensus        93 -----------~~~~~~~~-----------~~~~~~~~--~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~--  146 (342)
T d1yfqa_          93 -----------QALTNNEA-----------NLGICRIC--KYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN--  146 (342)
T ss_dssp             -----------EECBSCCC-----------CSCEEEEE--EETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS--
T ss_pred             -----------cccccccc-----------cccccccc--ccccccccccccccccceeeccccccceeeeccccccc--
Confidence                       22222320           22333344  46778999999999999999976542221  1111111  


Q ss_pred             ccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCC-CCCEEEEE-cCC
Q 014005          162 SSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDL  239 (432)
Q Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~-~d~  239 (432)
                             .........+.+....++.++.  ++.+++|++............ ..+...+.+..+.+ ++..++++ .||
T Consensus       147 -------~~~~~~~~~~~~~~~~~~~~~~--d~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg  216 (342)
T d1yfqa_         147 -------TKVKNKIFTMDTNSSRLIVGMN--NSQVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSIDG  216 (342)
T ss_dssp             -------SSSCCCEEEEEECSSEEEEEES--TTEEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred             -------ccceeeeeeeeccCCceeeecC--CCcEEEEecccCcccceeeee-cccccceeeeEeecCCCCEEEeecCCC
Confidence                   0122233445566777777777  999999999854333333333 44555566666554 56778888 999


Q ss_pred             eEEEEeCCCCCcee-----eEee--cCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecc
Q 014005          240 RINLWNLEISDQCF-----NIVD--MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  312 (432)
Q Consensus       240 ~i~lwd~~~~~~~~-----~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (432)
                      .+.+|+.+......     ..+.  ........|...+++++|+|++ ++||+|+.||.|++||+++++.    +..+..
T Consensus       217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~lasg~~Dg~v~vWD~~~~~~----l~~~~~  291 (342)
T d1yfqa_         217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKK----IKNFAK  291 (342)
T ss_dssp             EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEE----EEECCC
T ss_pred             eEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc-cEEEEECCCCEEEEEECCCCcE----EEEecC
Confidence            99999987322111     0000  0111235677789999999999 9999999999999999998775    566654


Q ss_pred             cccccCCccceeeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          313 AAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       313 h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                      +              ..+..++|+|+|++|+++ +++.+++|..
T Consensus       292 ~--------------~~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         292 F--------------NEDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             C--------------SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             C--------------CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            2              455678899999999886 5677888876

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=1.7e-21  Score=176.09  Aligned_cols=216  Identities=6%  Similarity=-0.031  Sum_probs=164.1

Q ss_pred             CccccCCCcEEEEEEcCCCCEEEEeccc--ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005           26 DEELQDVDIVSAIEFDKTGDYLAVGDRG--GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (432)
Q Consensus        26 ~~~~~h~~~V~~~~fsp~g~~l~t~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~  103 (432)
                      ...+.|...|++++|+|||++|++++.+  ..|++||.++++.                            ..+..|.  
T Consensus        36 ~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~----------------------------~~~~~~~--   85 (360)
T d1k32a3          36 VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA----------------------------EKFEENL--   85 (360)
T ss_dssp             EEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE----------------------------EECCCCC--
T ss_pred             EEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE----------------------------EEeeCCC--
Confidence            3456799999999999999999877654  3799999988753                            3566787  


Q ss_pred             ccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (432)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  183 (432)
                                ..|.+++|  +|++++|++++.++.+++|++.+++.......  +.           ..+.+++|+|++.
T Consensus        86 ----------~~v~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~~spdg~  140 (360)
T d1k32a3          86 ----------GNVFAMGV--DRNGKFAVVANDRFEIMTVDLETGKPTVIERS--RE-----------AMITDFTISDNSR  140 (360)
T ss_dssp             ----------CSEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--SS-----------SCCCCEEECTTSC
T ss_pred             ----------ceEEeeee--cccccccceeccccccccccccccceeeeeec--cc-----------ccccchhhcccee
Confidence                      89999999  99999999999999999999998875544332  22           5678899999999


Q ss_pred             ceecceee--------ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCC----
Q 014005          184 HGYHLEWT--------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD----  250 (432)
Q Consensus       184 ~~~~~~~~--------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~----  250 (432)
                      +++.....        .++.+++|++.   ..+....  ..+...+..++|+|+|+.|+++ .++.+.+||.....    
T Consensus       141 ~la~~~~~~~~~~~~~~~~~~~v~d~~---~~~~~~~--~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~  215 (360)
T d1k32a3         141 FIAYGFPLKHGETDGYVMQAIHVYDME---GRKIFAA--TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE  215 (360)
T ss_dssp             EEEEEEEECSSTTCSCCEEEEEEEETT---TTEEEEC--SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECC
T ss_pred             eeeeeccccccceeeccccceeeeccc---cCceeee--cccccccccccccCCCCEEEEEeCCCceEcccccccceeec
Confidence            98765431        14578999998   4444443  4567788899999999999988 89999998852100    


Q ss_pred             --------------------------------------------------------------------------------
Q 014005          251 --------------------------------------------------------------------------------  250 (432)
Q Consensus       251 --------------------------------------------------------------------------------  250 (432)
                                                                                                      
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (360)
T d1k32a3         216 VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP  295 (360)
T ss_dssp             SCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCC
T ss_pred             cccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecC
Confidence                                                                                            


Q ss_pred             --ceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          251 --QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       251 --~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                        ..+..+++.......|.+.|.+++|+||| +.|++++.||.|++||+.+++.
T Consensus       296 ~~~~i~~~d~~~~~~~~~~~~v~~~~~SpDG-~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         296 EKGVLLKYDVKTRKVTEVKNNLTDLRLSADR-KTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             CCEEEEEEETTTCCEEEEEEEEEEEEECTTS-CEEEEEETTSCEEEEESSCTTS
T ss_pred             CCCEEEEEECCCCeEEEecCCcCEEEECCCC-CEEEEEECCCeEEEEECCCCCc
Confidence              00011111111222344568899999999 9999999999999999998775

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=1.4e-21  Score=181.43  Aligned_cols=298  Identities=11%  Similarity=0.016  Sum_probs=179.6

Q ss_pred             chhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccc
Q 014005            4 NREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDF   83 (432)
Q Consensus         4 ~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   83 (432)
                      ...++.....|+...    ......+.....+..++|||||++|++++.|++|++||+.+++..                
T Consensus        37 ~~~~dg~v~vwD~~t----~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~----------------   96 (426)
T d1hzua2          37 TLRDAGQIALVDGDS----KKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT----------------   96 (426)
T ss_dssp             EETTTTEEEEEETTT----CSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE----------------
T ss_pred             EEcCCCEEEEEECCC----CcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCcee----------------
Confidence            334445566676542    112234445567999999999999999999999999999987632                


Q ss_pred             cccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccc
Q 014005           84 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVS  162 (432)
Q Consensus        84 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  162 (432)
                            ....+....+|.            ..+.+++|  +|||++++++ ..++.+.+||..++............  .
T Consensus        97 ------~~~~i~~~~~~~------------~~~~s~~~--spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~--~  154 (426)
T d1hzua2          97 ------KVAEIKIGIEAR------------SVESSKFK--GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT--V  154 (426)
T ss_dssp             ------EEEEEECCSEEE------------EEEECCST--TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC--S
T ss_pred             ------EEEEEeCCCCCc------------ceEEeeee--cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCC--c
Confidence                  000112223444            66677778  8999987555 58899999999988755443322111  0


Q ss_pred             cccccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCe
Q 014005          163 SENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR  240 (432)
Q Consensus       163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~  240 (432)
                      ........+....+..++++..+..... ..+.+.+++....... ....  ..+...+..+.++|++++++++  .+..
T Consensus       155 ~~~~~~~~~~~~~i~~s~d~~~~~~~~~-~~~~i~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~g~~~~~a~~~~~~  230 (426)
T d1hzua2         155 DTQTYHPEPRVAAIIASHEHPEFIVNVK-ETGKVLLVNYKDIDNL-TVTS--IGAAPFLADGGWDSSHRYFMTAANNSNK  230 (426)
T ss_dssp             SSCCEESCCCEEEEEECSSSSEEEEEET-TTTEEEEEECSSSSSC-EEEE--EECCSSEEEEEECTTSCEEEEEETTCSE
T ss_pred             cceeecCCCceeEEEECCCCCEEEEecC-CCCeEEEEEeccccce-eeEE--eccCCccEeeeECCCCcEEEeeeecccc
Confidence            0000111122333444455444433222 1334444444321111 1112  3567788999999999988876  6777


Q ss_pred             EEEEeCCCCCceeeEeec------------------------------------CC-----------CCcCCCCcceEEE
Q 014005          241 INLWNLEISDQCFNIVDM------------------------------------KP-----------SNMDDLTEVITSA  273 (432)
Q Consensus       241 i~lwd~~~~~~~~~~~~~------------------------------------~~-----------~~~~~~~~~v~~~  273 (432)
                      +.+++.. .++....+..                                    ..           ..+.+|...+..+
T Consensus       231 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v  309 (426)
T d1hzua2         231 VAVIDSK-DRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI  309 (426)
T ss_dssp             EEEEETT-TTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCE
T ss_pred             eeeeecc-cccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEE
Confidence            8888876 3333222110                                    00           0235677789999


Q ss_pred             EEcCCCCcEEEE-------EeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE-Ee
Q 014005          274 EFHPIYCNLLAY-------SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SR  345 (432)
Q Consensus       274 ~~~p~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~-s~  345 (432)
                      +|+|++ ++|++       ++.|++|++||+++++..    ..+..+...    ....++...|..++|||||++++ ++
T Consensus       310 ~~sPdg-~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~----~~~~~~~~~----~~~~~~~~rv~~~~fSpDGk~i~vs~  380 (426)
T d1hzua2         310 KTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLDAK----YQVLPIAEW----ADLGEGAKRVVQPEYNKRGDEVWFSV  380 (426)
T ss_dssp             ECCTTC-SEEEECCTTCSSHHHHTCEEEEETTCTTSC----CEEECHHHH----HCCCSSCCCEEEEEECSSSSEEEEEE
T ss_pred             EcCCCC-ceEEEeecCCCCcccCCEEEEEECCCCCcC----eEEeccchh----cccCCCCccEEEEEECCCCCEEEEEE
Confidence            999999 88884       456789999999988753    222111000    00111256789999999999774 32


Q ss_pred             ----e-CCeEEEEecCc
Q 014005          346 ----D-YMNLKVFRYEP  357 (432)
Q Consensus       346 ----~-~~~i~iwd~~~  357 (432)
                          + ++.|+|||.+.
T Consensus       381 ~~~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         381 WNGKNDSSALVVVDDKT  397 (426)
T ss_dssp             CCCTTSCCEEEEEETTT
T ss_pred             ecCCCCCCeEEEEECCC
Confidence                2 38999999933

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=4.2e-19  Score=155.94  Aligned_cols=246  Identities=11%  Similarity=0.101  Sum_probs=179.5

Q ss_pred             cccCCCcEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           28 ELQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        28 ~~~h~~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      .+...+.+..++|+|+|++| ++++.++.|++||+.+++.                           +..+..+.     
T Consensus        27 ~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~---------------------------~~~~~~~~-----   74 (301)
T d1l0qa2          27 TIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV---------------------------IATVPAGS-----   74 (301)
T ss_dssp             EEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE---------------------------EEEEECSS-----
T ss_pred             EEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce---------------------------eeeeeccc-----
Confidence            34445678899999999987 5677889999999988753                           35565554     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEE-EeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (432)
                              .+..+.|  ++++..+++ +..++.+.+|+..+++........              .....+.+++++..+
T Consensus        75 --------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~dg~~~  130 (301)
T d1l0qa2          75 --------SPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG--------------KSPLGLALSPDGKKL  130 (301)
T ss_dssp             --------SEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--------------SSEEEEEECTTSSEE
T ss_pred             --------ccccccc--ccccccccccccccceeeecccccceeeeecccc--------------ccceEEEeecCCCee
Confidence                    4678899  888886655 566789999999888744433322              355678899998877


Q ss_pred             ecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005          186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNM  263 (432)
Q Consensus       186 ~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (432)
                      ..... .++.+.+|+..   .......+  .+...+..++++|++..++++  .++.+.+|+.. ........       
T Consensus       131 ~~~~~-~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------  196 (301)
T d1l0qa2         131 YVTNN-GDKTVSVINTV---TKAVINTV--SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV-TNSVIDTV-------  196 (301)
T ss_dssp             EEEET-TTTEEEEEETT---TTEEEEEE--ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE-------
T ss_pred             eeeec-cccceeeeecc---ccceeeec--ccCCCceEEEeeccccceeeeccccccccccccc-ceeeeecc-------
Confidence            65432 16788999988   66666665  344568899999999988877  56777788877 45444433       


Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEe---CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCC
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ  340 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~  340 (432)
                       .....+..++|++++ ..++.++   .++.|++||+.+++.    ...+..              ...+.+++|+|||+
T Consensus       197 -~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~v~v~D~~t~~~----~~~~~~--------------~~~~~~va~spdg~  256 (301)
T d1l0qa2         197 -KVEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKI----TARIPV--------------GPDPAGIAVTPDGK  256 (301)
T ss_dssp             -ECSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEE----EEEEEC--------------CSSEEEEEECTTSS
T ss_pred             -cccCCcceeeccccc-cccccccccceeeeeeeeecCCCeE----EEEEcC--------------CCCEEEEEEeCCCC
Confidence             233457889999999 6665543   346899999998876    455554              35688999999999


Q ss_pred             EE-EEee-CCeEEEEec---CcceeEee
Q 014005          341 HL-LSRD-YMNLKVFRY---EPVMTLSF  363 (432)
Q Consensus       341 ~l-~s~~-~~~i~iwd~---~~~~~~~~  363 (432)
                      +| +++. +++|++||+   +.++++..
T Consensus       257 ~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         257 KVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            87 4554 499999999   55666654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.85  E-value=2.8e-19  Score=165.67  Aligned_cols=243  Identities=10%  Similarity=0.089  Sum_probs=162.2

Q ss_pred             CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEc
Q 014005           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  124 (432)
Q Consensus        45 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s  124 (432)
                      -++++++.||+|+|||+.+++.                           +.++..|.             .+..++|  +
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~---------------------------~~~l~~g~-------------~~~~vaf--S   70 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKI---------------------------VKVIDTGY-------------AVHISRM--S   70 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSE---------------------------EEEEECCS-------------SEEEEEE--C
T ss_pred             EEEEEEcCCCEEEEEECCCCcE---------------------------EEEEeCCC-------------CeeEEEE--C
Confidence            3568888999999999998764                           36777664             4889999  9


Q ss_pred             CCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce-eeccceEEEEeecc
Q 014005          125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE-WTENMATKIANVGN  203 (432)
Q Consensus       125 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~v~i~d~~~  203 (432)
                      |||+++++++.|++|++||+.+++...........        ...+.+.+++|+|++++++.+. .  ++.+++||.. 
T Consensus        71 PDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~--------~~~~~~~s~~~spDG~~l~v~~~~--~~~v~i~d~~-  139 (426)
T d1hzua2          71 ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI--------EARSVESSKFKGYEDRYTIAGAYW--PPQFAIMDGE-  139 (426)
T ss_dssp             TTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS--------EEEEEEECCSTTCTTTEEEEEEEE--SSEEEEEETT-
T ss_pred             CCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCC--------CCcceEEeeeecCCCCEEEEeecC--CCeEEEEcCC-
Confidence            99999999999999999999988754433322111        0125667889999999876554 4  7899999998 


Q ss_pred             cccceeeEEeecCCCCC-----------eeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          204 SVHARCQKVYPHAHDFN-----------INSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       204 ~~~~~~~~~~~~~~~~~-----------i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                        ...+.... ..+...           ...+..++++..++..  ..+.+.+++.. .......      ...++...+
T Consensus       140 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~-~~~~~~~------~~~~~~~~~  209 (426)
T d1hzua2         140 --TLEPKQIV-STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK-DIDNLTV------TSIGAAPFL  209 (426)
T ss_dssp             --TCCEEEEE-ECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECS-SSSSCEE------EEEECCSSE
T ss_pred             --ccceeEEe-eccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEec-cccceee------EEeccCCcc
Confidence              55666555 344333           3445555665555544  34555555554 2221111      113566778


Q ss_pred             EEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeecc---------------cc-------ccc----------
Q 014005          271 TSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRD---------------AA-------ESH----------  317 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~---------------h~-------~~~----------  317 (432)
                      ..+.|+|++ ++++++. .+..+.+++..+++..    .....               |.       ...          
T Consensus       210 ~~~~~~~~g-~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~  284 (426)
T d1hzua2         210 ADGGWDSSH-RYFMTAANNSNKVAVIDSKDRRLS----ALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTD  284 (426)
T ss_dssp             EEEEECTTS-CEEEEEETTCSEEEEEETTTTEEE----EEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECC
T ss_pred             EeeeECCCC-cEEEeeeecccceeeeecccccEE----EEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecc
Confidence            999999999 6655554 6667889998876642    11110               00       000          


Q ss_pred             ---------CCccceeeeecceeEEEEcCCCCEEEE-------ee-CCeEEEEec
Q 014005          318 ---------GSKSFFTEIIASISDIKFANDGQHLLS-------RD-YMNLKVFRY  355 (432)
Q Consensus       318 ---------~~~~~~~~~~~~v~~~~~s~dg~~l~s-------~~-~~~i~iwd~  355 (432)
                               .....+..|...+..++|+|||++|+.       +. +++|++||+
T Consensus       285 ~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~  339 (426)
T d1hzua2         285 PKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL  339 (426)
T ss_dssp             TTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEET
T ss_pred             ccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEEC
Confidence                     000234556778999999999999995       32 389999999

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=2.5e-19  Score=165.89  Aligned_cols=287  Identities=13%  Similarity=-0.030  Sum_probs=175.5

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      +.....+..++|||||++|++++.|++|++||+.+++..                      ....+....+|.       
T Consensus        58 ~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~----------------------~~~~i~~~~~~~-------  108 (432)
T d1qksa2          58 LDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT----------------------TVAEIKIGSEAR-------  108 (432)
T ss_dssp             EECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC----------------------EEEEEECCSEEE-------
T ss_pred             EeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCce----------------------EEEEEecCCCCC-------
Confidence            333457999999999999999999999999999876532                      001112222344       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEE-EEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          109 SLEIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                           ..+.+..|  +|||+++ +++..++.|++||..+++...........  .........+....+.+++++..++.
T Consensus       109 -----~~~~s~~~--SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~s~dg~~~~v  179 (432)
T d1qksa2         109 -----SIETSKME--GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT--YDEQEYHPEPRVAAILASHYRPEFIV  179 (432)
T ss_dssp             -----EEEECCST--TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC--TTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred             -----CeEEeccc--CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcc--ccceeccCCCceeEEEECCCCCEEEE
Confidence                 55666667  8899986 67788999999999988755443321111  00011122344556777888776544


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeec-------
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDM-------  258 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~-------  258 (432)
                      ... .++.+.+|+..   ..+..+...-.+...+..++|+|+|++++++  .++.+.++|.+ ..+....++.       
T Consensus       180 s~~-~~~~i~~~d~~---~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~-~~~~~~~~~~g~~~~~~  254 (432)
T d1qksa2         180 NVK-ETGKILLVDYT---DLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK-EGKLVAIEDTGGQTPHP  254 (432)
T ss_dssp             EET-TTTEEEEEETT---CSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEEEEECSSSSBCC
T ss_pred             EEc-cCCeEEEEEcc---CCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecc-cceEEEEeccCcccccc
Confidence            322 27789999987   3333332212455678899999999988876  67889999987 3433332211       


Q ss_pred             ------------------------------CCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccccc---c
Q 014005          259 ------------------------------KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD---H  305 (432)
Q Consensus       259 ------------------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~---~  305 (432)
                                                    .+.....|...+....++|++ ..+++++.++..++|+..+...-.   .
T Consensus       255 ~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~s~p~~~~lw~~~~~~~~~~~~~  333 (432)
T d1qksa2         255 GRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-GSLFIKTHPNSQYLYVDATLNPEAEISG  333 (432)
T ss_dssp             TTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCSEEEEECTTCSSHHHHT
T ss_pred             CcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCC-CeEEEEecCCccceeecccCCCCCCeee
Confidence                                          111122334456777788887 777788888888888754322100   0


Q ss_pred             cceeecccccccCC------------ccceeeeecceeEEEEcCCCCEEEEe-----e-CCeEEEEecCcce
Q 014005          306 SARILRDAAESHGS------------KSFFTEIIASISDIKFANDGQHLLSR-----D-YMNLKVFRYEPVM  359 (432)
Q Consensus       306 ~~~~~~~h~~~~~~------------~~~~~~~~~~v~~~~~s~dg~~l~s~-----~-~~~i~iwd~~~~~  359 (432)
                      .+....++......            ...+.++...+..++|||||++|+.+     + ++.|+|||.+.++
T Consensus       334 sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k  405 (432)
T d1qksa2         334 SVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE  405 (432)
T ss_dssp             CEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             EEEEEechhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCce
Confidence            01111110000000            01122345678899999999988542     2 3899999994443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=9.6e-19  Score=156.08  Aligned_cols=246  Identities=10%  Similarity=0.066  Sum_probs=170.7

Q ss_pred             CEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEc
Q 014005           45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA  124 (432)
Q Consensus        45 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s  124 (432)
                      +||++++.|++|+|||+++++.+                           .++..+..          ...+.+++|  +
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~---------------------------~~i~~~~~----------~~~~~~i~~--s   42 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVD---------------------------KVITIADA----------GPTPMVPMV--A   42 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEE---------------------------EEEECTTC----------TTCCCCEEE--C
T ss_pred             eEEEEEcCCCEEEEEECCCCeEE---------------------------EEEECCCC----------CCCccEEEE--C
Confidence            58999999999999999987633                           45544320          045778999  9


Q ss_pred             CCCCEEE-EEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee----------cc
Q 014005          125 PNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT----------EN  193 (432)
Q Consensus       125 ~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~  193 (432)
                      |||++++ +++.++.|.+||+.+++...........        .....+..++++|++.+++.+...          .+
T Consensus        43 pDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~--------~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T d1pbyb_          43 PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc--------ccccceeeEEEcCCCcEEEEeecCCcceeeeccccc
Confidence            9999874 5678999999999998754433222111        112456688999999988877642          14


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCC------------
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS------------  261 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~------------  261 (432)
                      ..+.+||..   .......+  .+...+..++|+|+|++++++. +.+.+||.. .++....+.....            
T Consensus       115 ~~~~~~d~~---~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~-~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~  187 (337)
T d1pbyb_         115 TRVALYDAE---TLSRRKAF--EAPRQITMLAWARDGSKLYGLG-RDLHVMDPE-AGTLVEDKPIQSWEAETYAQPDVLA  187 (337)
T ss_dssp             CEEEEEETT---TTEEEEEE--ECCSSCCCEEECTTSSCEEEES-SSEEEEETT-TTEEEEEECSTTTTTTTBCCCBCCC
T ss_pred             cceeecccc---CCeEEEec--cccCCceEEEEcCCCCEEEEEc-CCcceeeee-cCcEEEEeecCCccccceecCCcce
Confidence            578888888   66677766  3456788999999999998882 335678876 3333332211000            


Q ss_pred             -----------------------------------------------CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEE
Q 014005          262 -----------------------------------------------NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL  294 (432)
Q Consensus       262 -----------------------------------------------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  294 (432)
                                                                     ....+...+..+.++|++ .+++.+  ++.|++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~i~v  264 (337)
T d1pbyb_         188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLES  264 (337)
T ss_dssp             CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEE
T ss_pred             eeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccc-eEEEEc--cccEEE
Confidence                                                           001223345566777777 666544  578999


Q ss_pred             EEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec---CcceeEeecc
Q 014005          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMTLSFCG  365 (432)
Q Consensus       295 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~~~~~~  365 (432)
                      ||+.+++.    +..+..              ...+.+++|+|||++|++++ ++.|++||.   +.+.+++.+.
T Consensus       265 ~d~~~~~~----~~~~~~--------------~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g  321 (337)
T d1pbyb_         265 FDLEKNAS----IKRVPL--------------PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             EETTTTEE----EEEEEC--------------SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             EECCCCcE----EEEEcC--------------CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECCC
Confidence            99999876    455543              46788999999999999874 499999999   6677776654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=5.4e-18  Score=151.11  Aligned_cols=287  Identities=10%  Similarity=0.117  Sum_probs=186.5

Q ss_pred             cchhhccccchhhhhhhhcCCCCCccccCCCcEEEEEEcCCCCEEEE-ecccceEEEEEecCCcCCCCccccchhhhccc
Q 014005            3 LNREEASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAV-GDRGGRVILFETVGGKNTPNQHISRSELEKQM   81 (432)
Q Consensus         3 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~fsp~g~~l~t-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   81 (432)
                      +++.++.....|.+... +.......+.|.+.|..|+|+|||++|++ +..|+.|++|++......              
T Consensus         8 v~~~~~~~I~v~~~~~~-~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~--------------   72 (333)
T d1ri6a_           8 IASPESQQIHVWNLNHE-GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA--------------   72 (333)
T ss_dssp             EEEGGGTEEEEEEECTT-SCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC--------------
T ss_pred             EECCCCCcEEEEEEcCC-CCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc--------------
Confidence            45555666678887632 22223344678899999999999999854 556899999999875422              


Q ss_pred             cccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCCCEEEEEeC-CCeEEEEEccCcceeeeeecCCCCc
Q 014005           82 DFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPF  160 (432)
Q Consensus        82 ~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~  160 (432)
                               .+... ...+.            ..+..++|  +|||+++++++. ++.|.+|+..............+. 
T Consensus        73 ---------~~~~~-~~~~~------------~~p~~l~~--spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~-  127 (333)
T d1ri6a_          73 ---------LTFAA-ESALP------------GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-  127 (333)
T ss_dssp             ---------EEEEE-EEECS------------SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-
T ss_pred             ---------EEEee-ecccC------------CCceEEEE--cCCCCEEeecccCCCceeeeccccccceecccccCCC-
Confidence                     00111 11122            45778999  999999999875 678999998876644443333333 


Q ss_pred             cccccccccccccccccCCCCCcceecceeeccceEEEEeecccccceee--EEeecCCCCCeeEEEeCCCCCEEEEE--
Q 014005          161 VSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQ--KVYPHAHDFNINSISNNSDCETFVSA--  236 (432)
Q Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~--  236 (432)
                                ..+.++.+++++.+++.+.. .+..+.+|+..........  .............++|++++..+...  
T Consensus       128 ----------~~~~~v~~s~d~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~  196 (333)
T d1ri6a_         128 ----------DGCHSANISPDNRTLWVPAL-KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE  196 (333)
T ss_dssp             ----------TTBCCCEECTTSSEEEEEEG-GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred             ----------ccceEEEeeecceeeecccc-ccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecc
Confidence                      56778899999998877664 2457888887643222111  11123455667899999999888765  


Q ss_pred             cCCeEEEEeCCCCCceee---EeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeeccc
Q 014005          237 DDLRINLWNLEISDQCFN---IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA  313 (432)
Q Consensus       237 ~d~~i~lwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h  313 (432)
                      ..+...+|+.......+.   .+...+.. .........+++++++..+++.+..++.+.+|++.....    ......+
T Consensus       197 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  271 (333)
T d1ri6a_         197 LNSSVDVWELKDPHGNIECVQTLDMMPEN-FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS----VLSKEGF  271 (333)
T ss_dssp             TTTEEEEEESSCTTSCCEEEEEEECSCTT-CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC----CEEEEEE
T ss_pred             ccCceEEEeecccccceeeeeeeeeeecC-CCccccceeEEEecccCceeeecccCCeEEEEEEcCCCC----EEEEEEE
Confidence            677888888763332222   11111111 223345778899999944555566788999999876543    1222221


Q ss_pred             ccccCCccceeeeecceeEEEEcCCCCEEEEe-eC-CeEEEEec
Q 014005          314 AESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKVFRY  355 (432)
Q Consensus       314 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~~-~~i~iwd~  355 (432)
                      .          .....+.+++|+|||++|+++ .+ +.|++|++
T Consensus       272 ~----------~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         272 Q----------PTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             E----------ECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             e----------CCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            0          013467789999999998775 44 99999977

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=1.2e-18  Score=161.35  Aligned_cols=199  Identities=10%  Similarity=0.083  Sum_probs=144.7

Q ss_pred             cCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEE
Q 014005           41 DKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR  120 (432)
Q Consensus        41 sp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~  120 (432)
                      ++..-++++.+.||+|.|||.++++.                           +..+..+.             .+..++
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v---------------------------~~~~~~g~-------------~~~~v~   68 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEI---------------------------KTVLDTGY-------------AVHISR   68 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCE---------------------------EEEEECSS-------------CEEEEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcE---------------------------EEEEeCCC-------------CeeEEE
Confidence            34444568999999999999998764                           36676654             588999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcce-ecceeeccceEEEE
Q 014005          121 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG-YHLEWTENMATKIA  199 (432)
Q Consensus       121 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~v~i~  199 (432)
                      |  +|||+++++++.|+.|.+||+.+++...........        ...+.+....|+|+++++ +++..  ++.+++|
T Consensus        69 f--SpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~--------~~~~~~~s~~~SpDG~~l~vs~~~--~~~v~i~  136 (432)
T d1qksa2          69 L--SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--------EARSIETSKMEGWEDKYAIAGAYW--PPQYVIM  136 (432)
T ss_dssp             E--CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS--------EEEEEEECCSTTCTTTEEEEEEEE--TTEEEEE
T ss_pred             E--CCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC--------CCCCeEEecccCCCCCEEEEEcCC--CCeEEEE
Confidence            9  999999999999999999999887643333222110        012566778999999987 55666  8999999


Q ss_pred             eecccccceeeEEee----------cCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          200 NVGNSVHARCQKVYP----------HAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       200 d~~~~~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      |..   +.+++..+.          ..+......+.++|++..++.+  .++.|.+||.. ..+...+..      -.+.
T Consensus       137 d~~---t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~-~~~~~~~~~------i~~g  206 (432)
T d1qksa2         137 DGE---TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT-DLNNLKTTE------ISAE  206 (432)
T ss_dssp             ETT---TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT-CSSEEEEEE------EECC
T ss_pred             eCc---cccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEcc-CCCcceEEE------Eccc
Confidence            998   566665541          1234567788999999887655  78999999998 444444331      1344


Q ss_pred             cceEEEEEcCCCCcEEEEEe-CCCeEEEEEcccccc
Q 014005          268 EVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSAL  302 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~  302 (432)
                      ..+..++|+|++ +++++++ .++.+.++|..+++.
T Consensus       207 ~~~~~~~~spdg-~~~~va~~~~~~v~v~d~~~~~~  241 (432)
T d1qksa2         207 RFLHDGGLDGSH-RYFITAANARNKLVVIDTKEGKL  241 (432)
T ss_dssp             SSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTTEE
T ss_pred             CccccceECCCC-CEEEEeccccceEEEeecccceE
Confidence            568899999999 7665555 566899999987664

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.82  E-value=2.7e-17  Score=144.17  Aligned_cols=258  Identities=8%  Similarity=0.061  Sum_probs=179.3

Q ss_pred             EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcCCC
Q 014005           48 AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG  127 (432)
Q Consensus        48 ~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~~~  127 (432)
                      ++++.|++|.+||+++++..                           .++...             ..+..++|  +|||
T Consensus         6 V~~~~~~~v~v~D~~t~~~~---------------------------~~i~~g-------------~~p~~va~--spdG   43 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVT---------------------------ATIPVG-------------SNPMGAVI--SPDG   43 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEE---------------------------EEEECS-------------SSEEEEEE--CTTS
T ss_pred             EEECCCCEEEEEECCCCeEE---------------------------EEEECC-------------CCceEEEE--eCCC
Confidence            56778999999999887633                           444433             45678999  9999


Q ss_pred             CEEE-EEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeeccccc
Q 014005          128 SMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH  206 (432)
Q Consensus       128 ~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~  206 (432)
                      ++++ +++.++.|++||+.+++........              .....+.+++++..++.... .++.+.+|+..   .
T Consensus        44 ~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~  105 (301)
T d1l0qa2          44 TKVYVANAHSNDVSIIDTATNNVIATVPAG--------------SSPQGVAVSPDGKQVYVTNM-ASSTLSVIDTT---S  105 (301)
T ss_dssp             SEEEEEEGGGTEEEEEETTTTEEEEEEECS--------------SSEEEEEECTTSSEEEEEET-TTTEEEEEETT---T
T ss_pred             CEEEEEECCCCEEEEEECCCCceeeeeecc--------------cccccccccccccccccccc-ccceeeecccc---c
Confidence            9875 5667899999999988754332221              34567888999887665432 26789999988   6


Q ss_pred             ceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEE
Q 014005          207 ARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (432)
Q Consensus       207 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  284 (432)
                      .+....+  .+.....++.++|+++.++.+  .++.+.+|+.. .......+        .+...+..+.++|++ ..++
T Consensus       106 ~~~~~~~--~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~  173 (301)
T d1l0qa2         106 NTVAGTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINTV--------SVGRSPKGIAVTPDG-TKVY  173 (301)
T ss_dssp             TEEEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE--------ECCSSEEEEEECTTS-SEEE
T ss_pred             ceeeeec--cccccceEEEeecCCCeeeeeeccccceeeeecc-ccceeeec--------ccCCCceEEEeeccc-ccee
Confidence            6666665  345578899999999988755  78899999999 56555544        233457889999998 6666


Q ss_pred             EEeC-CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe--e-C-CeEEEEec---C
Q 014005          285 YSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--D-Y-MNLKVFRY---E  356 (432)
Q Consensus       285 ~~~~-dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~--~-~-~~i~iwd~---~  356 (432)
                      +++. ++.+.+|+....+.    ...+..              ...+..++|+++|..++.+  + . +.|++||+   +
T Consensus       174 ~~~~~~~~~~~~~~~~~~~----~~~~~~--------------~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~  235 (301)
T d1l0qa2         174 VANFDSMSISVIDTVTNSV----IDTVKV--------------EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (301)
T ss_dssp             EEETTTTEEEEEETTTTEE----EEEEEC--------------SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             eecccccccccccccceee----eecccc--------------cCCcceeeccccccccccccccceeeeeeeeecCCCe
Confidence            6654 46777888776554    344444              3567789999999987653  2 2 78999999   4


Q ss_pred             cceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeeccC
Q 014005          357 PVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALSAG  406 (432)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~  406 (432)
                      .+..+..+..           +....+..+-...+++++.++.|.+||..
T Consensus       236 ~~~~~~~~~~-----------~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         236 ITARIPVGPD-----------PAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             EEEEEECCSS-----------EEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEEEEcCCCC-----------EEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            4444544321           11112222223345788899999999943

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.82  E-value=1.1e-18  Score=156.42  Aligned_cols=256  Identities=13%  Similarity=0.118  Sum_probs=163.6

Q ss_pred             EEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeec-CCccccccchhhhhcce
Q 014005           38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIEEKI  116 (432)
Q Consensus        38 ~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-h~~~~~~~~~~~~~~~v  116 (432)
                      ++|++++++|++++.|++|.+||+++++.                           +.+++. |.            ..+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~---------------------------~~t~~~~~~------------~~p   42 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------------YKSCVMPDK------------FGP   42 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------------EEEEECSSC------------CSS
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCE---------------------------EEEEEcCCC------------CCc
Confidence            47899999999999999999999998763                           355553 44            567


Q ss_pred             eEEEEEEcCCCCEEEE-EeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceee----
Q 014005          117 NRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT----  191 (432)
Q Consensus       117 ~~l~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----  191 (432)
                      .+++|  +|||+++++ +..++.|.+||+.+++...........       ......+..++++|++.+++.....    
T Consensus        43 ~~l~~--spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~-------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~  113 (346)
T d1jmxb_          43 GTAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP-------GEVGRSMYSFAISPDGKEVYATVNPTQRL  113 (346)
T ss_dssp             CEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST-------TEEEECSSCEEECTTSSEEEEEEEEEEEC
T ss_pred             ceEEE--CCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccc-------cccCCceEEEEEecCCCEEEEEecCCcce
Confidence            89999  999998754 567899999999988754433222111       0111345678899999888766531    


Q ss_pred             ------ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeec-------
Q 014005          192 ------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDM-------  258 (432)
Q Consensus       192 ------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~-------  258 (432)
                            .+..+.+|+.........+...  .....+..+.+++++..++++  +.+.+|+.. +.+....+..       
T Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~  188 (346)
T d1jmxb_         114 NDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGSLYVAG--PDIYKMDVK-TGKYTVALPLRNWNRKG  188 (346)
T ss_dssp             SSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSCEEEES--SSEEEECTT-TCCEEEEECSTTCCCTT
T ss_pred             eeeeccCcceEEEEecccceeeeEEEee--eccCceEEEEecCCCEEEEeC--CcceEEEcc-CCCEEEEEecCCCccce
Confidence                  2556777777643222222221  112234444455555443332  224444443 2222211110       


Q ss_pred             -------------------------------------------------CCC-----CcCCCCcceEEEEEcCCCCcEEE
Q 014005          259 -------------------------------------------------KPS-----NMDDLTEVITSAEFHPIYCNLLA  284 (432)
Q Consensus       259 -------------------------------------------------~~~-----~~~~~~~~v~~~~~~p~~~~~l~  284 (432)
                                                                       ...     ....+...+..+.+++++ ..++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  267 (346)
T d1jmxb_         189 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD-PNQI  267 (346)
T ss_dssp             BCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSC-TTEE
T ss_pred             EEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCC-CEEE
Confidence                                                             000     012345567778888888 5566


Q ss_pred             EEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-CCeEEEEec---Cccee
Q 014005          285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKVFRY---EPVMT  360 (432)
Q Consensus       285 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-~~~i~iwd~---~~~~~  360 (432)
                      .+. ++.|++||+.+++.    +..+..              ...+.+++|||||++|++++ ++.|++||+   +.+.+
T Consensus       268 ~~~-~~~v~v~d~~~~~~----~~~~~~--------------~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~  328 (346)
T d1jmxb_         268 YGV-LNRLAKYDLKQRKL----IKAANL--------------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN  328 (346)
T ss_dssp             EEE-ESEEEEEETTTTEE----EEEEEC--------------SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred             Eec-CCeEEEEECCCCcE----EEEEcC--------------CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEE
Confidence            555 45799999998876    455543              35789999999999999974 499999999   67777


Q ss_pred             Eeecce
Q 014005          361 LSFCGI  366 (432)
Q Consensus       361 ~~~~~~  366 (432)
                      ++.+..
T Consensus       329 i~~p~g  334 (346)
T d1jmxb_         329 IKLPGG  334 (346)
T ss_dssp             EECSSS
T ss_pred             EECCCC
Confidence            776653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=4.2e-15  Score=131.97  Aligned_cols=289  Identities=8%  Similarity=0.000  Sum_probs=175.5

Q ss_pred             EEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcceeEEEEEEcC
Q 014005           46 YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP  125 (432)
Q Consensus        46 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~s~  125 (432)
                      .+++++.|++|++|+++....+                        +.++. ..|.            +.+..|+|  +|
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l------------------------~~~~~-~~~~------------~~v~~la~--sp   46 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGAL------------------------TLTQV-VDVP------------GQVQPMVV--SP   46 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCE------------------------EEEEE-EECS------------SCCCCEEE--CT
T ss_pred             EEEECCCCCcEEEEEEcCCCCe------------------------EEEEE-EcCC------------CCEeEEEE--eC
Confidence            3577889999999999865421                        12222 2455            78999999  99


Q ss_pred             CCCEEEEEe-CCCeEEEEEccCccee-eeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecc
Q 014005          126 NGSMFILST-NDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  203 (432)
Q Consensus       126 ~~~~l~s~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~  203 (432)
                      ||++|++++ .|+.|++|++...... ........           ...+..++++|++++++.+.. .++.+.+|+...
T Consensus        47 DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~-----------~~~p~~l~~spDg~~l~v~~~-~~~~v~~~~~~~  114 (333)
T d1ri6a_          47 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-----------PGSLTHISTDHQGQFVFVGSY-NAGNVSVTRLED  114 (333)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-----------SSCCSEEEECTTSSEEEEEET-TTTEEEEEEEET
T ss_pred             CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc-----------CCCceEEEEcCCCCEEeeccc-CCCceeeecccc
Confidence            999986665 5899999999765422 11111111           145677999999999888754 256888888774


Q ss_pred             cccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCc
Q 014005          204 SVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN  281 (432)
Q Consensus       204 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  281 (432)
                      ........ . ..+...+.++.++|++++++++  .+..+.+|+............ .. ...........++|++++ .
T Consensus       115 ~~~~~~~~-~-~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~~~g~~p~~i~~~~~~-~  189 (333)
T d1ri6a_         115 GLPVGVVD-V-VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP-AE-VTTVEGAGPRHMVFHPNE-Q  189 (333)
T ss_dssp             TEEEEEEE-E-ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE-EE-EECSTTCCEEEEEECTTS-S
T ss_pred             ccceeccc-c-cCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeec-ee-eeeecCCCccEEEEeccc-e
Confidence            32222222 2 4567788899999999988877  678899999884333322110 00 012334557889999998 5


Q ss_pred             EEEE-EeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-e-CCeEEEEec---
Q 014005          282 LLAY-SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLKVFRY---  355 (432)
Q Consensus       282 ~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~-~~~i~iwd~---  355 (432)
                      .++. ....+...+++................   .+...    ........+++++|++++... . ++.+.+|++   
T Consensus       190 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~  262 (333)
T d1ri6a_         190 YAYCVNELNSSVDVWELKDPHGNIECVQTLDM---MPENF----SDTRWAADIHITPDGRHLYACDRTASLITVFSVSED  262 (333)
T ss_dssp             EEEEEETTTTEEEEEESSCTTSCCEEEEEEEC---SCTTC----CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             eEEeeccccCceEEEeecccccceeeeeeeee---eecCC----CccccceeEEEecccCceeeecccCCeEEEEEEcCC
Confidence            5554 446677888887643321111111111   00000    013456778999999988764 3 389999998   


Q ss_pred             CcceeEeecceeeeehhhhhcccccccccceeeEEEEeecccceeeeec
Q 014005          356 EPVMTLSFCGIYVWILRQLQHSRFMSIYALSCVIYIITTLYLINLSALS  404 (432)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  404 (432)
                      .....+..+...       ...+....+..+-...++++..++.|.+|+
T Consensus       263 ~~~~~~~~~~~~-------~~~p~~~a~spDGk~l~va~~~~~~v~v~~  304 (333)
T d1ri6a_         263 GSVLSKEGFQPT-------ETQPRGFNVDHSGKYLIAAGQKSHHISVYE  304 (333)
T ss_dssp             SCCEEEEEEEEC-------SSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             CCEEEEEEEeCC-------CCCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            222222221110       001111122223334567788889999995

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=1.2e-15  Score=135.60  Aligned_cols=214  Identities=11%  Similarity=0.035  Sum_probs=142.1

Q ss_pred             CCCcEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           31 DVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      +...+.+++|+|||++| ++++.++.|.+||+.+++..                           ..+..+.+..     
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~---------------------------~~~~~~~~~~-----   79 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL---------------------------GRIDLSTPEE-----   79 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE---------------------------EEEECCBTTE-----
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEE---------------------------EEEecCCCcc-----
Confidence            34567899999999987 56778999999999987643                           3333332100     


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEe------------CCCeEEEEEccCcceeeeeecCCCCcccccccccccccccccc
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILST------------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH  177 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  177 (432)
                        ....+..++|  +|++++++++.            .++.+.+||..+++........              ..+..++
T Consensus        80 --~~~~~~~v~~--s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------~~~~~~~  141 (337)
T d1pbyb_          80 --RVKSLFGAAL--SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--------------RQITMLA  141 (337)
T ss_dssp             --EEECTTCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--------------SSCCCEE
T ss_pred             --cccceeeEEE--cCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc--------------CCceEEE
Confidence              0044567899  89999988875            3578889998887754433322              2344555


Q ss_pred             CCCCCcceecceee-------------------------------------------------------------ccceE
Q 014005          178 NPPSFAHGYHLEWT-------------------------------------------------------------ENMAT  196 (432)
Q Consensus       178 ~~~~~~~~~~~~~~-------------------------------------------------------------~~~~v  196 (432)
                      +++++.+++.+...                                                             .++.+
T Consensus       142 ~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (337)
T d1pbyb_         142 WARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL  221 (337)
T ss_dssp             ECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred             EcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccE
Confidence            55555555443210                                                             01134


Q ss_pred             EEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEc
Q 014005          197 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH  276 (432)
Q Consensus       197 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  276 (432)
                      .+|+..   .+.........+...+..+.++|++..++.+ ++.+++||++ +++.+..+        .+...+.+++|+
T Consensus       222 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~-~~~~~~~~--------~~~~~~~~~~~s  288 (337)
T d1pbyb_         222 LTMDLE---TGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLE-KNASIKRV--------PLPHSYYSVNVS  288 (337)
T ss_dssp             EEEETT---TCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETT-TTEEEEEE--------ECSSCCCEEEEC
T ss_pred             EEEEcC---CCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECC-CCcEEEEE--------cCCCCEEEEEEC
Confidence            444443   2222222113456677778888888776554 6899999999 66666654        234568899999


Q ss_pred             CCCCcEEEEEeCCCeEEEEEccccccccccceeecc
Q 014005          277 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD  312 (432)
Q Consensus       277 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (432)
                      ||| ++|++++.|+.|++||..+++.    +..+..
T Consensus       289 ~dG-~~l~v~~~~~~i~v~D~~t~~~----v~~i~~  319 (337)
T d1pbyb_         289 TDG-STVWLGGALGDLAAYDAETLEK----KGQVDL  319 (337)
T ss_dssp             TTS-CEEEEESBSSEEEEEETTTCCE----EEEEEC
T ss_pred             CCC-CEEEEEeCCCcEEEEECCCCcE----EEEEEC
Confidence            999 9999999999999999998876    455543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.68  E-value=6.2e-14  Score=126.60  Aligned_cols=300  Identities=8%  Similarity=-0.059  Sum_probs=179.7

Q ss_pred             cCCCcEEEEEEcCCCCEEEEe-----cccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccc
Q 014005           30 QDVDIVSAIEFDKTGDYLAVG-----DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF  104 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~  104 (432)
                      .+..++.+++++|+|+.++..     +.++.+.+||.++++.+                           .++..+.   
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~---------------------------~~~~~~~---   67 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL---------------------------GHVNGGF---   67 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEE---------------------------EEEeCCC---
Confidence            456789999999999988764     23457999998887643                           5555554   


Q ss_pred             cccchhhhhcceeEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccc
Q 014005          105 DYLKSLEIEEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM  174 (432)
Q Consensus       105 ~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  174 (432)
                               .  ..++|  +|||++|++++          .++.|.+||..+++............      ........
T Consensus        68 ---------~--~~~a~--SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~------~~~~~~~~  128 (373)
T d2madh_          68 ---------L--PNPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR------FDVGPYSW  128 (373)
T ss_pred             ---------C--ccEEE--cCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcce------eEeccCCC
Confidence                     2  36889  89999998875          45789999999887544332221110      00012234


Q ss_pred             cccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEE-EE-cCCeEEEEeCCCCCce
Q 014005          175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQC  252 (432)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~-~d~~i~lwd~~~~~~~  252 (432)
                      .+.|+++++.+.......++.+.+|+..   ..+...     +.....++.++|+++.+. +. .|+.+.+|+.. ....
T Consensus       129 ~~~~s~dg~~~~v~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~-~~~~  199 (373)
T d2madh_         129 MNANTPNNADLLFFQFAAGPAVGLVVQG---GSSDDQ-----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHA-GGAA  199 (373)
T ss_pred             cEEEEeCCCcEEEEEEcCCCceEEeecc---CCeEEE-----EeccceeEEEecCCCcEEEEEcCCCeEEEEEcC-Ccee
Confidence            5778888888777766556788888876   333322     233466888999987665 55 89999999998 4444


Q ss_pred             eeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeE
Q 014005          253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (432)
Q Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  332 (432)
                      ....... ..............+++++  .++..+.++.+.+|+..++....  ...+..+.   ...............
T Consensus       200 ~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~  271 (373)
T d2madh_         200 GAGLVGA-MLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATN--KAPIDALS---GGRKADTWRPGGWQQ  271 (373)
T ss_pred             eEEEeee-ccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEE--EEeecccc---CcEEeeeeccCccee
Confidence            4433110 0112223334556666665  45566778999999988765311  11111110   000000000123345


Q ss_pred             EEEcCCCCEEE----------Ee-eCCeEEEEec---CcceeEeecceeeeehhhhhcccccccccce-eeEEEEeeccc
Q 014005          333 IKFANDGQHLL----------SR-DYMNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALS-CVIYIITTLYL  397 (432)
Q Consensus       333 ~~~s~dg~~l~----------s~-~~~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~  397 (432)
                      +++++++..++          +. ..+.+.+||.   +.+..+.....           .....+..+ ...++++++.|
T Consensus       272 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~-----------~~~~a~spDG~~~l~vt~~~d  340 (373)
T d2madh_         272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHD-----------VDAISVAQDGGPDLYALSAGT  340 (373)
T ss_pred             eEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCC-----------eeEEEECCCCCEEEEEEeCCC
Confidence            66666665543          22 3378999999   44555443221           111112222 33357789999


Q ss_pred             ceeeeeccC
Q 014005          398 INLSALSAG  406 (432)
Q Consensus       398 ~~i~~~~~~  406 (432)
                      +.|.+||..
T Consensus       341 ~~v~v~D~~  349 (373)
T d2madh_         341 EVLHIYDAG  349 (373)
T ss_pred             CeEEEEECC
Confidence            999999943

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=7.6e-15  Score=131.64  Aligned_cols=257  Identities=11%  Similarity=0.074  Sum_probs=158.7

Q ss_pred             EEEEcCCCCEEEEe-----cccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           37 AIEFDKTGDYLAVG-----DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        37 ~~~fsp~g~~l~t~-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      -.+.+|+|+.+++.     ..+.+|.+||..+++.+                           .++..+.          
T Consensus         6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~---------------------------~~~~~g~----------   48 (355)
T d2bbkh_           6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI---------------------------GMIDGGF----------   48 (355)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE---------------------------EEEEECS----------
T ss_pred             eEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEE---------------------------EEEECCC----------
Confidence            34568999988764     34568999999887633                           4554443          


Q ss_pred             hhcceeEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC
Q 014005          112 IEEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  181 (432)
                          ...++|  +|||++|++++          .|+.|.+||+.+++...........      ..........++|+++
T Consensus        49 ----~~~~a~--SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~------~~~~~~~~~~~~~s~d  116 (355)
T d2bbkh_          49 ----LPNPVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP------RFLVGTYPWMTSLTPD  116 (355)
T ss_dssp             ----SCEEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC------CCCBSCCGGGEEECTT
T ss_pred             ----CCceEE--cCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcc------eeecCCCCceEEEecC
Confidence                346899  99999887653          4789999999998755433322111      0001133456789999


Q ss_pred             CcceecceeeccceEEEEeecccccceeeEEee--------------------------------------------cCC
Q 014005          182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYP--------------------------------------------HAH  217 (432)
Q Consensus       182 ~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~--------------------------------------------~~~  217 (432)
                      +.++.......+..+.+|+...   .+....+.                                            ..+
T Consensus       117 g~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~  193 (355)
T d2bbkh_         117 GKTLLFYQFSPAPAVGVVDLEG---KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED  193 (355)
T ss_dssp             SSEEEEEECSSSCEEEEEETTT---TEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT
T ss_pred             CCeeEEecCCCCceeeeeecCC---CcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccccee
Confidence            9988776655566778887763   22222210                                            001


Q ss_pred             CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCcee--eEeecCCC---CcCCCCcceEEEEEcCCCCcEEEEEeCC--
Q 014005          218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF--NIVDMKPS---NMDDLTEVITSAEFHPIYCNLLAYSSSR--  289 (432)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~--~~~~~~~~---~~~~~~~~v~~~~~~p~~~~~l~~~~~d--  289 (432)
                      ...+....+.+++..++.+ .++.+++|++. .+...  ........   ...........++++|++ ..++....+  
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~  271 (355)
T d2bbkh_         194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLS-SGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRD  271 (355)
T ss_dssp             SCBCSCCEEETTTTEEEEEBTTSEEEEEECT-TSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECC
T ss_pred             cceeeeccccCCCCeEEEecCCCeEEEEecC-CCcEEEEeccCCcccceEeeeeeccceEEEEEeCCC-CeEEEEeccCC
Confidence            1123334455556667766 78889999988 33221  11100000   000011223458899998 666655433  


Q ss_pred             --------CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCE--EEEee-CCeEEEEec---
Q 014005          290 --------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH--LLSRD-YMNLKVFRY---  355 (432)
Q Consensus       290 --------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~--l~s~~-~~~i~iwd~---  355 (432)
                              +.|.+||..+++.    +..+..              ...+.+++|+|||+.  ++++. ++.|++||+   
T Consensus       272 ~~~~~~~~~~v~v~d~~t~~~----~~~~~~--------------~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg  333 (355)
T d2bbkh_         272 EWRHKTASRFVVVLDAKTGER----LAKFEM--------------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG  333 (355)
T ss_dssp             TTCTTSCEEEEEEEETTTCCE----EEEEEE--------------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             ceeecCCCCeEEEEeCCCCcE----EEEecC--------------CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC
Confidence                    3799999998876    455554              467889999999983  44553 599999999   


Q ss_pred             CcceeEeecc
Q 014005          356 EPVMTLSFCG  365 (432)
Q Consensus       356 ~~~~~~~~~~  365 (432)
                      +.++++..++
T Consensus       334 ~~~~~i~~~G  343 (355)
T d2bbkh_         334 EELRSVNQLG  343 (355)
T ss_dssp             CEEEEECCCC
T ss_pred             CEEEEEeCcC
Confidence            6667765443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.63  E-value=1.3e-14  Score=129.24  Aligned_cols=232  Identities=7%  Similarity=-0.026  Sum_probs=148.2

Q ss_pred             ccCCCcEEEEEEcCCCCEE-EEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL  107 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~  107 (432)
                      +.|...+.+++|+|||+++ +++..++.|.+||+.+++..                           ..+.....     
T Consensus        36 ~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~---------------------------~~~~~~~~-----   83 (346)
T d1jmxb_          36 MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT---------------------------FHANLSSV-----   83 (346)
T ss_dssp             CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE---------------------------EEEESCCS-----
T ss_pred             cCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeee---------------------------eeeccccc-----
Confidence            3456678899999999987 56678899999999887643                           22221110     


Q ss_pred             chhhhhcceeEEEEEEcCCCCEEEEEe------------CCCeEEEEEccCcceeee-eecCCC---Cc--------cc-
Q 014005          108 KSLEIEEKINRVRWCAAPNGSMFILST------------NDKTIKLWKVRDQKVKKI-KEMDHF---PF--------VS-  162 (432)
Q Consensus       108 ~~~~~~~~v~~l~~~~s~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~-~~~~~~---~~--------~~-  162 (432)
                       .......+..++|  +|||+++++++            .++.+.+|+..+++.... ......   ..        +. 
T Consensus        84 -~~~~~~~~~~v~~--s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          84 -PGEVGRSMYSFAI--SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             -TTEEEECSSCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             -ccccCCceEEEEE--ecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence             0000034667899  89999988775            467899999877653211 110000   00        00 


Q ss_pred             --------------cccccccccccccccCCCCCcceeccee------------------------eccceEEEEeeccc
Q 014005          163 --------------SENTLLAEKNFMNEHNPPSFAHGYHLEW------------------------TENMATKIANVGNS  204 (432)
Q Consensus       163 --------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------------~~~~~v~i~d~~~~  204 (432)
                                    .+...........+.++|++..+.....                        .....+.+|+..  
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  238 (346)
T d1jmxb_         161 AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK--  238 (346)
T ss_dssp             ESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT--
T ss_pred             eCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECC--
Confidence                          0000111233345555666554432211                        013356667766  


Q ss_pred             ccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEE
Q 014005          205 VHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA  284 (432)
Q Consensus       205 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  284 (432)
                       ...........+...+..+.+++++.+++...++.+.+||.. .++.+..+        .+...+.+++|+||| ++|+
T Consensus       239 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~-~~~~~~~~--------~~~~~~~~va~s~DG-~~l~  307 (346)
T d1jmxb_         239 -TGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLK-QRKLIKAA--------NLDHTYYCVAFDKKG-DKLY  307 (346)
T ss_dssp             -TCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETT-TTEEEEEE--------ECSSCCCEEEECSSS-SCEE
T ss_pred             -CCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECC-CCcEEEEE--------cCCCCEEEEEEcCCC-CEEE
Confidence             333333332567788899999999988888866789999998 66666654        233458899999999 8999


Q ss_pred             EEeCCCeEEEEEccccccccccceeecc
Q 014005          285 YSSSRGFVRLVDMRQSALCDHSARILRD  312 (432)
Q Consensus       285 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~  312 (432)
                      +++.|+.|++||.++++.    +..++.
T Consensus       308 v~~~d~~v~v~D~~t~~~----i~~i~~  331 (346)
T d1jmxb_         308 LGGTFNDLAVFNPDTLEK----VKNIKL  331 (346)
T ss_dssp             EESBSSEEEEEETTTTEE----EEEEEC
T ss_pred             EEeCCCcEEEEECccCCE----EEEEEC
Confidence            999999999999999886    455554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.60  E-value=4.8e-13  Score=120.65  Aligned_cols=255  Identities=9%  Similarity=-0.003  Sum_probs=155.4

Q ss_pred             EEEEEcCCCCEEEEec----------ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           36 SAIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        36 ~~~~fsp~g~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ..++|+|||++|++++          .++.|++||..+++..                           ..+..+.... 
T Consensus        69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~---------------------------~~~~~~~~~~-  120 (373)
T d2madh_          69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPR-  120 (373)
T ss_pred             ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEE---------------------------EEEecCCcce-
Confidence            3689999999998864          4578999999987643                           3333332000 


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEE--eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCc
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA  183 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  183 (432)
                          .........+.|  +++++.++..  ..++.+.+|+....+.....                 .....+.+++++.
T Consensus       121 ----~~~~~~~~~~~~--s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~s~~g~  177 (373)
T d2madh_         121 ----FDVGPYSWMNAN--TPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL-----------------SSPTCYHIHPGAP  177 (373)
T ss_pred             ----eEeccCCCcEEE--EeCCCcEEEEEEcCCCceEEeeccCCeEEEEe-----------------ccceeEEEecCCC
Confidence                000012345778  6788776555  44578889988776533221                 2344667788877


Q ss_pred             cee-cceeeccceEEEEeecccccceeeEEee-----cCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEee
Q 014005          184 HGY-HLEWTENMATKIANVGNSVHARCQKVYP-----HAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD  257 (432)
Q Consensus       184 ~~~-~~~~~~~~~v~i~d~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~  257 (432)
                      .++ ....  ++.+.+|+...   ........     .........+.+.+++..++.+.++.+.+|+.. .........
T Consensus       178 ~~~v~~~~--dg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~  251 (373)
T d2madh_         178 STFYLLCA--QGGLAKTDHAG---GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADIS-AAGATNKAP  251 (373)
T ss_pred             cEEEEEcC--CCeEEEEEcCC---ceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcC-CCeEEEEEe
Confidence            654 3344  88999999873   33333321     122223445667777766655588999999988 333222111


Q ss_pred             cCCC--C---cCCCCcceEEEEEcCCCC---------cEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005          258 MKPS--N---MDDLTEVITSAEFHPIYC---------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (432)
Q Consensus       258 ~~~~--~---~~~~~~~v~~~~~~p~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~  323 (432)
                      ....  .   ..........++++|++.         ..++....++.+.+||..+++.    +..+..           
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~----~~~~~~-----------  316 (373)
T d2madh_         252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT----SSQISL-----------  316 (373)
T ss_pred             eccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcE----EEEecC-----------
Confidence            0000  0   001112234455666551         2334455677899999998876    455544           


Q ss_pred             eeeecceeEEEEcCCCCE--EEEe-eCCeEEEEec---CcceeEeecc
Q 014005          324 TEIIASISDIKFANDGQH--LLSR-DYMNLKVFRY---EPVMTLSFCG  365 (432)
Q Consensus       324 ~~~~~~v~~~~~s~dg~~--l~s~-~~~~i~iwd~---~~~~~~~~~~  365 (432)
                         ...+..++|+|||+.  ++++ .++.|++||+   +.++++..+.
T Consensus       317 ---~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g  361 (373)
T d2madh_         317 ---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELG  361 (373)
T ss_pred             ---CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCC
Confidence               467889999999984  3455 5599999999   6777776554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.49  E-value=8.5e-13  Score=118.00  Aligned_cols=229  Identities=9%  Similarity=0.072  Sum_probs=133.5

Q ss_pred             cEEEEEEcCCCCEEEEe----------cccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcc
Q 014005           34 IVSAIEFDKTGDYLAVG----------DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE  103 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~  103 (432)
                      .+..++|||||++|+++          +.|+.|++||..+++..                           ..+..+...
T Consensus        48 ~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~---------------------------~~~~~~~~~  100 (355)
T d2bbkh_          48 FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT---------------------------ADIELPDAP  100 (355)
T ss_dssp             SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------------------------EEEEETTCC
T ss_pred             CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEE---------------------------EEEecCCcc
Confidence            34478999999988764          34789999999887643                           222222100


Q ss_pred             ccccchhhhhcceeEEEEEEcCCCCEEEEEe--CCCeEEEEEccCcceeeeeecCCCCc-----------cccc------
Q 014005          104 FDYLKSLEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPF-----------VSSE------  164 (432)
Q Consensus       104 ~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~-----------~~~~------  164 (432)
                      .     .........++|  ++++++++.+.  .+..+.+|+..+++............           ++.-      
T Consensus       101 ~-----~~~~~~~~~~~~--s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v  173 (355)
T d2bbkh_         101 R-----FLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKV  173 (355)
T ss_dssp             C-----CCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEE
T ss_pred             e-----eecCCCCceEEE--ecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEE
Confidence            0     000023355788  88998887764  46788999988776432221110000           0000      


Q ss_pred             ---------------cccccccccccccCCCCCcceecceeeccceEEEEeecccccceeeEEeecCC----------CC
Q 014005          165 ---------------NTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAH----------DF  219 (432)
Q Consensus       165 ---------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~----------~~  219 (432)
                                     ........+....+.+....++....  ++.+.+|++... ....+... ..+          ..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~~~~-~~~~~~~~~~~~~p~  249 (355)
T d2bbkh_         174 AFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--TGKIHQIDLSSG-DAKFLPAV-EALTEAERADGWRPG  249 (355)
T ss_dssp             ECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--TSEEEEEECTTS-SCEECCCE-ESSCHHHHHTTEEEC
T ss_pred             EecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC--CCeEEEEecCCC-cEEEEecc-CCcccceEeeeeecc
Confidence                           00000111122223333333333333  778999988743 11111111 111          12


Q ss_pred             CeeEEEeCCCCCEEEEE-cC----------CeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCc-EEEEEe
Q 014005          220 NINSISNNSDCETFVSA-DD----------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSS  287 (432)
Q Consensus       220 ~i~~~~~~~~~~~l~~~-~d----------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~  287 (432)
                      ....+++++++..++.. .+          ..|.+||.. +++.+..+        .+...+.+++|+|||.. ++++++
T Consensus       250 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~-t~~~~~~~--------~~~~~~~~~a~spDG~~~l~v~~~  320 (355)
T d2bbkh_         250 GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK-TGERLAKF--------EMGHEIDSINVSQDEKPLLYALST  320 (355)
T ss_dssp             SSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT-TCCEEEEE--------EEEEEECEEEECCSSSCEEEEEET
T ss_pred             ceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCC-CCcEEEEe--------cCCCCEEEEEEcCCCCeEEEEEEC
Confidence            34568899999887765 32          369999999 56665554        23355889999999932 456677


Q ss_pred             CCCeEEEEEccccccccccceeeccc
Q 014005          288 SRGFVRLVDMRQSALCDHSARILRDA  313 (432)
Q Consensus       288 ~dg~i~iwd~~~~~~~~~~~~~~~~h  313 (432)
                      .|+.|++||+++++.    ++.+.++
T Consensus       321 ~d~~i~v~D~~tg~~----~~~i~~~  342 (355)
T d2bbkh_         321 GDKTLYIHDAESGEE----LRSVNQL  342 (355)
T ss_dssp             TTTEEEEEETTTCCE----EEEECCC
T ss_pred             CCCEEEEEECCCCCE----EEEEeCc
Confidence            899999999999987    5777663

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.41  E-value=9.9e-12  Score=111.79  Aligned_cols=255  Identities=7%  Similarity=-0.013  Sum_probs=143.4

Q ss_pred             EEEEEcCCCCEEEEe----------cccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           36 SAIEFDKTGDYLAVG----------DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        36 ~~~~fsp~g~~l~t~----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ..++|+|+|++|++.          +.|+.|++||..+.+..                           ..+..+.... 
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~---------------------------~~i~~p~~~~-  119 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPR-  119 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE---------------------------EEEEETTSCS-
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEe---------------------------eeecCCccce-
Confidence            358899999988874          35788999999887633                           2332221000 


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEe-CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                          .........++|  +|||++++++. .++.+.+||+.+++............      ....+....+.+++    
T Consensus       120 ----~~~g~~p~~~a~--SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~----  183 (368)
T d1mdah_         120 ----FSVGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH------IHPGAAATHYLGSC----  183 (368)
T ss_dssp             ----CCBSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC------CEEEETTEEECCCC----
T ss_pred             ----ecccCCccceEE--CCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce------EccCCCceEEEEcC----
Confidence                000022346889  99999998875 57999999999988555433321110      00011222233333    


Q ss_pred             eecceeeccceEEEEeecccccceee---EEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCC
Q 014005          185 GYHLEWTENMATKIANVGNSVHARCQ---KVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS  261 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~  261 (432)
                              |+.+.++++.........   ..+ ..+...+....+.+++..+. ..++.+.+++.. .+...........
T Consensus       184 --------Dg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~-~~~~~v~~~~~~-~~~~~~~~~~~~~  252 (368)
T d1mdah_         184 --------PASLAASDLAAAPAAAGIVGAQCT-GAQNCSSQAAQANYPGMLVW-AVASSILQGDIP-AAGATMKAAIDGN  252 (368)
T ss_dssp             --------TTSCEEEECCSSCCCCEECCCCSC-TTSCBCSCCEEETTTTEEEE-CBSSCCEEEECC-SSCCEEECCCCSS
T ss_pred             --------CCCEEEEEecCCceeeeeeecccc-cccccceeecccccCcEEEE-ecCCCEEEEeec-CCceEEEeecccc
Confidence                    555555554422111100   011 23444556677777774433 345667777776 2222211100000


Q ss_pred             C-----cCCCCcceEEEEEcCCCCcEEEEEeCC---------CeEEEEEccccccccccceeecccccccCCccceeeee
Q 014005          262 N-----MDDLTEVITSAEFHPIYCNLLAYSSSR---------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII  327 (432)
Q Consensus       262 ~-----~~~~~~~v~~~~~~p~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  327 (432)
                      .     ..........++++|++ ..++....+         ..|.+||..+++.    +..+..              .
T Consensus       253 ~~~~~~~~~~~~g~~~~a~~~~~-~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~----~~~~~~--------------~  313 (368)
T d1mdah_         253 ESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQT----SGPISN--------------G  313 (368)
T ss_dssp             CTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCE----EECCEE--------------E
T ss_pred             cceeeeeeecCCCceeEEEcCCC-CEEEEEecCCCceeecCCceEEEEECCCCcE----eEEecC--------------C
Confidence            0     00011223457889998 555444322         3589999998876    455544              4


Q ss_pred             cceeEEEEcCCCCE-E-EEe-eCCeEEEEec---CcceeEeec
Q 014005          328 ASISDIKFANDGQH-L-LSR-DYMNLKVFRY---EPVMTLSFC  364 (432)
Q Consensus       328 ~~v~~~~~s~dg~~-l-~s~-~~~~i~iwd~---~~~~~~~~~  364 (432)
                      ..+.+++|+|||+. | +++ .++.|++||.   +.+++++..
T Consensus       314 ~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         314 HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence            67889999999973 3 444 4599999999   566666554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.40  E-value=1.2e-11  Score=115.16  Aligned_cols=117  Identities=7%  Similarity=0.008  Sum_probs=80.4

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecc---------cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecC
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDR---------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH  100 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h  100 (432)
                      .|...|.++.|||||++|+.++.         ++.+.|||+.+++.                            ..+..|
T Consensus        59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~----------------------------~~l~~~  110 (470)
T d2bgra1          59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL----------------------------ITEERI  110 (470)
T ss_dssp             TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE----------------------------CCSSCC
T ss_pred             hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc----------------------------cccccC
Confidence            45678999999999999998743         56789999998763                            245666


Q ss_pred             CccccccchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccc-c----cccccccccccc
Q 014005          101 EPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS-S----ENTLLAEKNFMN  175 (432)
Q Consensus       101 ~~~~~~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~i~~  175 (432)
                      .            ..+..+.|  +|||+++|... ++.+.+|+..+++...+.......... .    +......+....
T Consensus       111 ~------------~~~~~~~~--SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1         111 P------------NNTQWVTW--SPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             C------------TTEEEEEE--CSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             C------------cccccccc--ccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence            6            78899999  99999999864 678999999888744432211111000 0    000011234456


Q ss_pred             ccCCCCCcceecce
Q 014005          176 EHNPPSFAHGYHLE  189 (432)
Q Consensus       176 ~~~~~~~~~~~~~~  189 (432)
                      +.|+|+++.++...
T Consensus       176 ~~wSPDGk~ia~~~  189 (470)
T d2bgra1         176 LWWSPNGTFLAYAQ  189 (470)
T ss_dssp             EEECTTSSEEEEEE
T ss_pred             cEECCCCCccceeE
Confidence            77999998887764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.26  E-value=8.5e-11  Score=105.64  Aligned_cols=247  Identities=11%  Similarity=0.019  Sum_probs=146.0

Q ss_pred             CCCcEEEEEEcCCCCEEEEe-cccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeee-cCCccccccc
Q 014005           31 DVDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLK  108 (432)
Q Consensus        31 h~~~V~~~~fsp~g~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h~~~~~~~~  108 (432)
                      |.-...+..++|||++|++. ..+.+|.++|+++.+..                           ..+. .+.       
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~---------------------------~ii~iP~g-------  115 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTD---------------------------KITHIPNV-------  115 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEE---------------------------EEEECTTC-------
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEe---------------------------eEEecCCC-------
Confidence            44466777788999998655 46779999999887532                           2222 123       


Q ss_pred             hhhhhcceeEEEEEEcCCCC--EEEEEeCCC-----------------eEEEEEccCcceeeeeecCCCCcccccccccc
Q 014005          109 SLEIEEKINRVRWCAAPNGS--MFILSTNDK-----------------TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA  169 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~--~l~s~~~d~-----------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (432)
                           ..+..++|  +|+++  +++..+.+.                 .+..+|..+.+.......              
T Consensus       116 -----~gphgi~~--spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v--------------  174 (441)
T d1qnia2         116 -----QAIHGLRL--QKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV--------------  174 (441)
T ss_dssp             -----CCEEEEEE--CCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEE--------------
T ss_pred             -----CCccceEE--eccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEec--------------
Confidence                 67889999  88887  444444332                 123355555442221111              


Q ss_pred             ccccccccCCCCCcceecceeec---------------------------------------cceEEEEeecccccceee
Q 014005          170 EKNFMNEHNPPSFAHGYHLEWTE---------------------------------------NMATKIANVGNSVHARCQ  210 (432)
Q Consensus       170 ~~~i~~~~~~~~~~~~~~~~~~~---------------------------------------~~~v~i~d~~~~~~~~~~  210 (432)
                      .+....+.++|++++++......                                       ++.+.+++..   ....+
T Consensus       175 ~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~---~~~v~  251 (441)
T d1qnia2         175 DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRG---ESEFT  251 (441)
T ss_dssp             SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSS---SCSSE
T ss_pred             CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEccc---CCceE
Confidence            24456777788877776554321                                       1223333332   22334


Q ss_pred             EEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCC-CcCC---CCcceEEEEEcCCCCcEEE
Q 014005          211 KVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPS-NMDD---LTEVITSAEFHPIYCNLLA  284 (432)
Q Consensus       211 ~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~-~~~~---~~~~v~~~~~~p~~~~~l~  284 (432)
                      +.+ .. ......+.++|||++++++  .++++.+||+++..+.+.-. +++. .+.+   ..-.....+|+++| +...
T Consensus       252 ~~I-Pv-gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~-~~~~~~~~~~~~~glgplh~~fd~~g-~~yt  327 (441)
T d1qnia2         252 RYI-PV-PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDK-IELRDTIVAEPELGLGPLHTTFDGRG-NAYT  327 (441)
T ss_dssp             EEE-CC-BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTS-SCGGGGEEECCBCCSCEEEEEECSSS-EEEE
T ss_pred             EEE-eC-CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhcc-CCcceEEEeecccccCcccceecCCc-eEEE
Confidence            444 22 2346789999999988755  79999999987311111000 0000 0001   11124556899999 8888


Q ss_pred             EEeCCCeEEEEEccccc------cccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC
Q 014005          285 YSSSRGFVRLVDMRQSA------LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY  347 (432)
Q Consensus       285 ~~~~dg~i~iwd~~~~~------~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~  347 (432)
                      +...|..|..|++....      .....+..+.-|        ...+|...+.+.+++|||+||++++.
T Consensus       328 s~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~--------y~~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         328 TLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQ--------YQPGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             EETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS--------SCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred             cccccceEEEeccchhhhhhccCCCceeEeccccc--------cCCCCCccccccccCCCCcEEEecCc
Confidence            88999999999986321      111112333222        11345788889999999999999863

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.14  E-value=9.1e-10  Score=102.13  Aligned_cols=168  Identities=14%  Similarity=0.196  Sum_probs=104.0

Q ss_pred             EEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcce
Q 014005           37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (432)
Q Consensus        37 ~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (432)
                      .+.|.++++++..  .|+.+.+||+.+++....       +               ....+..|.            ..|
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~-------~---------------~~~~~~~~~------------~~i   64 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVF-------L---------------ENSTFDEFG------------HSI   64 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEE-------E---------------CTTTTTTSS------------SCC
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEE-------E---------------chhhhhhcc------------Ccc
Confidence            5789999998765  467899999998863200       0               001334444            779


Q ss_pred             eEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceE
Q 014005          117 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT  196 (432)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v  196 (432)
                      .++.|  +|||++|+.++..  .++|....                                              .+.+
T Consensus        65 ~~~~~--SpDg~~i~~~~~~--~~~~r~s~----------------------------------------------~~~~   94 (470)
T d2bgra1          65 NDYSI--SPDGQFILLEYNY--VKQWRHSY----------------------------------------------TASY   94 (470)
T ss_dssp             CEEEE--CTTSSEEEEEEEE--EECSSSCE----------------------------------------------EEEE
T ss_pred             ceeEE--CCCCCEEEEEECC--cceeeecc----------------------------------------------CceE
Confidence            99999  9999999988632  12221100                                              3344


Q ss_pred             EEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCC--CcC---------C
Q 014005          197 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS--NMD---------D  265 (432)
Q Consensus       197 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~--~~~---------~  265 (432)
                      .+||+.   .++.. .+ ..+...+..+.|+|||+.+|...++.+++|+.. .+...+...-...  ...         .
T Consensus        95 ~l~d~~---~~~~~-~l-~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~-~g~~~~~t~~~~~~~~~~g~~d~~~~~~  168 (470)
T d2bgra1          95 DIYDLN---KRQLI-TE-ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP-NLPSYRITWTGKEDIIYNGITDWVYEEE  168 (470)
T ss_dssp             EEEETT---TTEEC-CS-SCCCTTEEEEEECSSTTCEEEEETTEEEEESST-TSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             EEEECC---CCccc-cc-ccCCccccccccccCcceeeEeecccceEEECC-CCceeeeeeccCCCcccccccceeeeee
Confidence            455544   22221 12 466778889999999999999988899999998 4544432200000  000         0


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCe-EEEEEc
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGF-VRLVDM  297 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~-i~iwd~  297 (432)
                      ..+....+.|+||| +.||....|.+ +..|++
T Consensus       169 ~~~~~~~~~wSPDG-k~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         169 VFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             TSSSSBCEEECTTS-SEEEEEEEECTTCCEEEE
T ss_pred             ecCCccccEECCCC-CccceeEecCCcCceEEE
Confidence            12334568899999 88888775533 444443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.10  E-value=3e-08  Score=84.75  Aligned_cols=244  Identities=16%  Similarity=0.151  Sum_probs=148.3

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      .-..|+++++|+++++-..++.|++||.+...                            +..+...... +     ...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~----------------------------~~~~~~~~~~-~-----~~~   69 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF----------------------------KFQFGECGKR-D-----SQL   69 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSCE----------------------------EEEECCBSSS-T-----TCB
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCCE----------------------------EEEecccCCC-c-----ccc
Confidence            45789999999988887777899999865421                            1222110000 0     000


Q ss_pred             cceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          114 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      ..-..+++. ...+..+++. +.++.|..++........+....             -.....++..+++...+....  
T Consensus        70 ~~p~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~-------------~~~p~~~avd~~G~i~v~~~~--  133 (279)
T d1q7fa_          70 LYPNRVAVV-RNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATI-------------LQHPRGVTVDNKGRIIVVECK--  133 (279)
T ss_dssp             SSEEEEEEE-TTTTEEEEEECGGGCEEEEECTTSCEEEEECTTT-------------CSCEEEEEECTTSCEEEEETT--
T ss_pred             ccccccccc-ccccccceeccCCccccccccccccceeecCCCc-------------ccccceeccccCCcEEEEeec--
Confidence            223445552 2223344433 44567777776543322221110             023445666666665555433  


Q ss_pred             cceEEEEeecccccceeeEEe-ecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcce
Q 014005          193 NMATKIANVGNSVHARCQKVY-PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI  270 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v  270 (432)
                      .+.+.+++..    ++.+..+ ...+......+++.++++.+++. ..+.|++||..  ++.+..+     ...+.....
T Consensus       134 ~~~~~~~~~~----g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~--G~~~~~~-----g~~g~~~~P  202 (279)
T d1q7fa_         134 VMRVIIFDQN----GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQI-----GGEGITNYP  202 (279)
T ss_dssp             TTEEEEECTT----SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEEE-----SCTTTSCSE
T ss_pred             cceeeEeccC----CceeecccccccccccceeeeccceeEEeeeccccceeeeecC--Cceeeee-----cccccccCC
Confidence            4556666543    3344443 13456678889999999888777 89999999987  5555554     113445568


Q ss_pred             EEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCCe
Q 014005          271 TSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN  349 (432)
Q Consensus       271 ~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~~  349 (432)
                      ..++++|+| +++++-. .++.|.+|+. +|+.    +..+... .          .......+++.|||.++++..+++
T Consensus       203 ~giavD~~G-~i~Vad~~~~~~v~~f~~-~G~~----~~~~~~~-~----------~~~~p~~vav~~dG~l~V~~~n~~  265 (279)
T d1q7fa_         203 IGVGINSNG-EILIADNHNNFNLTIFTQ-DGQL----ISALESK-V----------KHAQCFDVALMDDGSVVLASKDYR  265 (279)
T ss_dssp             EEEEECTTC-CEEEEECSSSCEEEEECT-TSCE----EEEEEES-S----------CCSCEEEEEEETTTEEEEEETTTE
T ss_pred             cccccccCC-eEEEEECCCCcEEEEECC-CCCE----EEEEeCC-C----------CCCCEeEEEEeCCCcEEEEeCCCe
Confidence            899999999 8776644 3457999984 4664    3555431 0          023578899999998777665589


Q ss_pred             EEEEec
Q 014005          350 LKVFRY  355 (432)
Q Consensus       350 i~iwd~  355 (432)
                      |++|+.
T Consensus       266 v~~fr~  271 (279)
T d1q7fa_         266 LYIYRY  271 (279)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999987

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.09  E-value=2e-08  Score=89.65  Aligned_cols=296  Identities=9%  Similarity=-0.104  Sum_probs=161.6

Q ss_pred             CCcEEEEEEcCCCCE--E-EEecccce--EEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           32 VDIVSAIEFDKTGDY--L-AVGDRGGR--VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        32 ~~~V~~~~fsp~g~~--l-~t~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      .+....++..++++.  + ++...++.  +.+||..+++                           .+....++.     
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~---------------------------~~~~~~~~~-----   66 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGV---------------------------TLGHSLGAF-----   66 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTE---------------------------EEEEEEECT-----
T ss_pred             CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCc---------------------------EEEEEeCCC-----
Confidence            344455567788874  2 33455555  5555766654                           334555444     


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEe----------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccc
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE  176 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  176 (432)
                             .  ..++|  +|||+.+++++          .|+.|.+||..+++............      .........+
T Consensus        67 -------~--~~~a~--spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~------~~~g~~p~~~  129 (368)
T d1mdah_          67 -------L--SLAVA--GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR------FSVGPRVHII  129 (368)
T ss_dssp             -------T--CEEEE--CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS------CCBSCCTTSE
T ss_pred             -------C--CcceE--CCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccce------ecccCCccce
Confidence                   2  35788  89999888764          47789999999887544333221110      0011234568


Q ss_pred             cCCCCCcceecceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCCCCCceee
Q 014005          177 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFN  254 (432)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~d~~i~lwd~~~~~~~~~  254 (432)
                      +|+|++++++.+.. .++.+.+||+.   ..+....+ ..+....    +.|. ...++.. .||.+..+++...+....
T Consensus       130 a~SpDGk~l~va~~-~~~~v~~~d~~---~~~~~~~~-~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~  200 (368)
T d1mdah_         130 GNCASSACLLFFLF-GSSAAAGLSVP---GASDDQLT-KSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAG  200 (368)
T ss_dssp             EECTTSSCEEEEEC-SSSCEEEEEET---TTEEEEEE-ECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred             EECCCCCEEEEEeC-CCCeEEEEECC---CCcEeEEe-eccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeee
Confidence            89999999987653 26899999998   66766666 3332221    1112 2334444 677777777763332222


Q ss_pred             EeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEE
Q 014005          255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK  334 (432)
Q Consensus       255 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~  334 (432)
                      ..  .......+...+..+.+.+++ ..+.+  .++.+.+++...+....  ......+.   ...............++
T Consensus       201 ~~--~~~~~~~~~~~~~~~~~~~~g-~~~~~--~~~~v~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~g~~~~a  270 (368)
T d1mdah_         201 IV--GAQCTGAQNCSSQAAQANYPG-MLVWA--VASSILQGDIPAAGATM--KAAIDGNE---SGRKADNFRSAGFQMVA  270 (368)
T ss_dssp             EC--CCCSCTTSCBCSCCEEETTTT-EEEEC--BSSCCEEEECCSSCCEE--ECCCCSSC---THHHHTTEEECSSSCEE
T ss_pred             ee--ecccccccccceeecccccCc-EEEEe--cCCCEEEEeecCCceEE--Eeeccccc---ceeeeeeecCCCceeEE
Confidence            11  111123444556677888887 65543  35567777776554310  01111100   00000000112345688


Q ss_pred             EcCCCCEEEEe--eC--------CeEEEEec---CcceeEeecceeeeehhhhhcccccccccce-eeEEEEeeccccee
Q 014005          335 FANDGQHLLSR--DY--------MNLKVFRY---EPVMTLSFCGIYVWILRQLQHSRFMSIYALS-CVIYIITTLYLINL  400 (432)
Q Consensus       335 ~s~dg~~l~s~--~~--------~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~i  400 (432)
                      +++++..+...  ..        ..|.+||.   +.+..+.....           .....+..+ ....++++..++.|
T Consensus       271 ~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~-----------~~~~a~spDG~~~ly~s~~~~~~v  339 (368)
T d1mdah_         271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD-----------SDAIIAAQDGASDNYANSAGTEVL  339 (368)
T ss_dssp             EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE-----------ECEEEECCSSSCEEEEEETTTTEE
T ss_pred             EcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCc-----------eeEEEECCCCCEEEEEEeCCCCeE
Confidence            99998876542  11        36889999   44444443221           111111112 22346777889999


Q ss_pred             eeeccC
Q 014005          401 SALSAG  406 (432)
Q Consensus       401 ~~~~~~  406 (432)
                      .+||..
T Consensus       340 ~v~D~~  345 (368)
T d1mdah_         340 DIYDAA  345 (368)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            999954

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.06  E-value=4.9e-07  Score=80.22  Aligned_cols=265  Identities=9%  Similarity=-0.045  Sum_probs=139.2

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCc-ceeeeeecCCCCccccccccccccccccccCCCCCcceeccee-e
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW-T  191 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~  191 (432)
                      ..+.-|+|  ++++++|.++.. +.+..|.+... ..........            ......+.++++++.+..... .
T Consensus        40 ~~~s~la~--s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~------------~~~p~~v~~~~~~~~~~v~~a~~  104 (365)
T d1jofa_          40 EPISWMTF--DHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPI------------GGHPRANDADTNTRAIFLLAAKQ  104 (365)
T ss_dssp             CCCSEEEE--CTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEEC------------CSSGGGGCTTSCCEEEEEEECSS
T ss_pred             CCCCEEEE--cCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecC------------CCCcEEEEECCCCCEEEEEEecC
Confidence            45667999  899999888765 56888877643 2222211111            134567788888774332111 0


Q ss_pred             ccceEEE------------Eeecccc-cceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEe
Q 014005          192 ENMATKI------------ANVGNSV-HARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV  256 (432)
Q Consensus       192 ~~~~v~i------------~d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~  256 (432)
                      ..+.+..            ..+.... ...............+.++.|+|+|++++++  ....|.+|+....+.....-
T Consensus       105 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~  184 (365)
T d1jofa_         105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG  184 (365)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred             CCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecc
Confidence            1223333            3222110 1111111112334468899999999988877  46788888876444322211


Q ss_pred             ecCCCCcCCCCcceEEEEEcCCCCcEE-EEEeCCCeEEEEEccccccccccceeeccccccc----CCccceeeeeccee
Q 014005          257 DMKPSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESH----GSKSFFTEIIASIS  331 (432)
Q Consensus       257 ~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~----~~~~~~~~~~~~v~  331 (432)
                      .   ..........+.++|+|++ +++ ++...+++|.+|++..++...  .......+..+    ..............
T Consensus       185 ~---~~~~~~g~gPr~i~f~pdg-~~~yv~~e~~~~V~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (365)
T d1jofa_         185 S---VDAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMP--VYTHHSFPLIPPGIPDRDPETGKGLYRAD  258 (365)
T ss_dssp             E---EECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCE--EEEEEEEESSCTTCCCBCTTTSSBSEEEE
T ss_pred             c---eeecCCCCceEEEEECCCC-ceEEEeccCCCEEEEEEecCCCceE--EEEeeeeccccccccccccccccccCCcc
Confidence            0   0112334568999999999 655 555578899999987655311  11111100000    00000111134566


Q ss_pred             EEEEcCCCCEEEEe--eC-----CeEEEEecC---cceeE-eecceeeeehhhhhccccccccc-ceeeEEEEeecccce
Q 014005          332 DIKFANDGQHLLSR--DY-----MNLKVFRYE---PVMTL-SFCGIYVWILRQLQHSRFMSIYA-LSCVIYIITTLYLIN  399 (432)
Q Consensus       332 ~~~~s~dg~~l~s~--~~-----~~i~iwd~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~  399 (432)
                      .+.++|||++|+++  .+     ..|..|++.   .+... .....    ... -..+...... .+-.+.++++..++.
T Consensus       259 ~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~----~~~-G~~p~~i~~~p~~G~~l~va~~~s~~  333 (365)
T d1jofa_         259 VCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT----PTS-GGHSNAVSPCPWSDEWMAITDDQEGW  333 (365)
T ss_dssp             EEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC----SSC-CTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE----EcC-CCCccEEEecCCCCCEEEEEeCCCCe
Confidence            89999999999874  22     347777771   11111 11100    000 0011111111 123456778888999


Q ss_pred             eeeec
Q 014005          400 LSALS  404 (432)
Q Consensus       400 i~~~~  404 (432)
                      |.+|+
T Consensus       334 v~v~~  338 (365)
T d1jofa_         334 LEIYR  338 (365)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99997

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=5.7e-08  Score=82.32  Aligned_cols=222  Identities=11%  Similarity=0.058  Sum_probs=122.7

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccc---eEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCcccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGG---RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD  105 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~  105 (432)
                      ..+.+.+...+|||||+.||......   .+.+.+..++..                            ..+..+.    
T Consensus        35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~----   82 (269)
T d2hqsa1          35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV----------------------------RQVASFP----   82 (269)
T ss_dssp             EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE----------------------------EEEECCS----
T ss_pred             ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce----------------------------eEEeeee----
Confidence            34567788999999999998754332   355555544331                            2333444    


Q ss_pred             ccchhhhhcceeEEEEEEcCCCCEEEEEeC-CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       106 ~~~~~~~~~~v~~l~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                              .......|  +|+|+.++.... ++...++................            .......+++++..
T Consensus        83 --------~~~~~~~~--spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~  140 (269)
T d2hqsa1          83 --------RHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR------------SNNTEPTWFPDSQN  140 (269)
T ss_dssp             --------SCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCS------------SCEEEEEECTTSSE
T ss_pred             --------ccccccee--cCCCCeeeEeeecCCccceeecccccccceeeeecc------------cccccccccccccc
Confidence                    66778889  899998887653 33333333322221111111100            11122233444443


Q ss_pred             eecceeeccc--eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCC
Q 014005          185 GYHLEWTENM--ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP  260 (432)
Q Consensus       185 ~~~~~~~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~  260 (432)
                      ....... ++  .+...++..   . ..... ...........|+|+++.++..  .++...+|.........+.     
T Consensus       141 ~~~~~~~-~g~~~i~~~~~~~---~-~~~~~-~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~-----  209 (269)
T d2hqsa1         141 LAFTSDQ-AGRPQVYKVNING---G-APQRI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-----  209 (269)
T ss_dssp             EEEEECT-TSSCEEEEEETTS---S-CCEEC-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-----
T ss_pred             ceecccc-cCCceEeeeeccc---c-cceee-ecccccccccccccccceeEEEeecCCceeeeEeecccccceE-----
Confidence            3332221 33  344444432   1 11222 3455667778999999998876  5555555555422333332     


Q ss_pred             CCcCCCCcceEEEEEcCCCCcEEEEEeC---CCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcC
Q 014005          261 SNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN  337 (432)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~  337 (432)
                         ...........|+||| +.|+..+.   ...+.++++..+..     ..+...             .+.+...+|||
T Consensus       210 ---~~~~~~~~~p~~SPDG-~~i~f~s~~~~~~~l~~~~~dg~~~-----~~lt~~-------------~g~~~~p~WSP  267 (269)
T d2hqsa1         210 ---LSSTFLDETPSLAPNG-TMVIYSSSQGMGSVLNLVSTDGRFK-----ARLPAT-------------DGQVKFPAWSP  267 (269)
T ss_dssp             ---CCCSSSCEEEEECTTS-SEEEEEEEETTEEEEEEEETTSCCE-----EECCCS-------------SSEEEEEEECC
T ss_pred             ---eecCccccceEECCCC-CEEEEEEcCCCCcEEEEEECCCCCE-----EEEeCC-------------CCcEEeEEeCC
Confidence               2334456788999999 76665443   34688899886553     344432             45677889998

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.02  E-value=1.1e-07  Score=80.21  Aligned_cols=239  Identities=11%  Similarity=0.032  Sum_probs=139.6

Q ss_pred             cCCCcEEEEEEcCCCCEEEE-ecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           30 QDVDIVSAIEFDKTGDYLAV-GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      .+.-.-..|+++++|++.++ .+..+.+..++......                          ......+.        
T Consensus        11 ~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~--------------------------~~~~~~~~--------   56 (260)
T d1rwia_          11 DFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT--------------------------TVLPFNGL--------   56 (260)
T ss_dssp             CSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CE--------------------------EECCCCSC--------
T ss_pred             CCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceE--------------------------EEeccCCc--------
Confidence            33445579999999996655 44556777666554321                          00111111        


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                           .....+++  ++++..+++....+.+++++-....  .......            -.....+++.+++...+..
T Consensus        57 -----~~p~gvav--~~~g~i~v~d~~~~~i~~~~~~~~~--~~~~~~~------------~~~p~~iavd~~g~i~v~d  115 (260)
T d1rwia_          57 -----YQPQGLAV--DGAGTVYVTDFNNRVVTLAAGSNNQ--TVLPFDG------------LNYPEGLAVDTQGAVYVAD  115 (260)
T ss_dssp             -----CSCCCEEE--CTTCCEEEEETTTEEEEECTTCSCC--EECCCCS------------CCSEEEEEECTTCCEEEEE
T ss_pred             -----cCceEEEE--cCCCCEEEeeeeeceeeeeeeccce--eeeeeee------------eeecccccccccceeEeec
Confidence                 33567888  8899877766666666655443332  2111111            0334567777777655443


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT  267 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~  267 (432)
                      ..  +..+..++...    .....+..........++++++++.+++. .++.|..+|.+ ... ...+      .....
T Consensus       116 ~~--~~~~~~~~~~~----~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~-~~~-~~~~------~~~~~  181 (260)
T d1rwia_         116 RG--NNRVVKLAAGS----KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE-SNN-QVVL------PFTDI  181 (260)
T ss_dssp             GG--GTEEEEECTTC----SSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTT-TCC-EEEC------CCSSC
T ss_pred             cc--ccccccccccc----ceeeeeeecccCCcceeeecCCCCEeeeccccccccccccc-cce-eeee------ecccc
Confidence            22  44455554432    11122112233456789999999988777 88899999988 332 2222      12334


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee-
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-  346 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~-  346 (432)
                      .....+++++++ +++++....+.|..++......     ..+..-            ......+|+++++|.++++-. 
T Consensus       182 ~~p~gi~~d~~g-~l~vsd~~~~~i~~~~~~~~~~-----~~~~~~------------~~~~P~~i~~d~~g~l~vad~~  243 (260)
T d1rwia_         182 TAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS-----TVLPFT------------GLNTPLAVAVDSDRTVYVADRG  243 (260)
T ss_dssp             CSEEEEEECTTC-CEEEEETTTTEEEEECTTCSCC-----EECCCC------------SCCCEEEEEECTTCCEEEEEGG
T ss_pred             CCCccceeeeee-eeeeeecCCCEEEEEeCCCCeE-----EEEccC------------CCCCeEEEEEeCCCCEEEEECC
Confidence            557899999998 8888888888888888654321     333220            024567999999998777743 


Q ss_pred             CCeEEEEec
Q 014005          347 YMNLKVFRY  355 (432)
Q Consensus       347 ~~~i~iwd~  355 (432)
                      .++|+.++.
T Consensus       244 ~~rI~~i~~  252 (260)
T d1rwia_         244 NDRVVKLTS  252 (260)
T ss_dssp             GTEEEEECC
T ss_pred             CCEEEEEeC
Confidence            377765554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.01  E-value=1.1e-08  Score=91.75  Aligned_cols=202  Identities=8%  Similarity=0.007  Sum_probs=117.7

Q ss_pred             eeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc-
Q 014005          116 INRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN-  193 (432)
Q Consensus       116 v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-  193 (432)
                      ......  +|||+++++. ..++.|.++|+.+.+...+......            .....++|+++++..+......+ 
T Consensus        74 ~s~t~g--tpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g------------~gphgi~~spdg~t~YV~~~~~~~  139 (441)
T d1qnia2          74 ISMTDG--RYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNV------------QAIHGLRLQKVPKTNYVFCNAEFV  139 (441)
T ss_dssp             EEEETT--EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTC------------CCEEEEEECCSSBCCEEEEEECSC
T ss_pred             cceecc--cCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCC------------CCccceEEeccCCEEEEEeccCCc
Confidence            334444  5789988666 5678999999999886665443221            45677889988886544322111 


Q ss_pred             ----------------ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCC-----------------
Q 014005          194 ----------------MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL-----------------  239 (432)
Q Consensus       194 ----------------~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~-----------------  239 (432)
                                      ..+..+|..   +......+  .-......++++|+|++++++ .+.                 
T Consensus       140 v~~~~dg~~~~~~~~~~~~~~iD~~---t~~v~~qI--~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i  214 (441)
T d1qnia2         140 IPQPNDGTDFSLDNSYTMFTAIDAE---TMDVAWQV--IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWV  214 (441)
T ss_dssp             EESSCSSSCCCGGGEEEEEEEEETT---TCSEEEEE--EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEE
T ss_pred             ccccCcccccccccccceEEeecCc---cceeeEEE--ecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEE
Confidence                            123344544   33333333  123467889999999988866 321                 


Q ss_pred             ------------------------eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcE-EEEEeCCCeEEE
Q 014005          240 ------------------------RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL-LAYSSSRGFVRL  294 (432)
Q Consensus       240 ------------------------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~~~~~dg~i~i  294 (432)
                                              .+.+++.. ....+..+       ... .....+.++||| ++ ++++..+++|.+
T Consensus       215 ~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~-~~~v~~~I-------Pvg-ksPhGv~vSPDG-kyl~~~~~~~~tvsv  284 (441)
T d1qnia2         215 VVFNVERIAAAVKAGNFKTIGDSKVPVVDGRG-ESEFTRYI-------PVP-KNPHGLNTSPDG-KYFIANGKLSPTVSV  284 (441)
T ss_dssp             EEEEHHHHHHHHHTTCCBCCTTCCCCEEECSS-SCSSEEEE-------CCB-SSCCCEEECTTS-CEEEEECTTSSBEEE
T ss_pred             EeCCccceEEEecCCCEEEeCCCCcEEEEccc-CCceEEEE-------eCC-CCccCceECCCC-CEEEEeCCcCCcEEE
Confidence                                    12222222 11222222       222 235679999999 65 456678999999


Q ss_pred             EEccccccccccceeecccccccCCccce---eeeecceeEEEEcCCCCEEEEe-eCCeEEEEec
Q 014005          295 VDMRQSALCDHSARILRDAAESHGSKSFF---TEIIASISDIKFANDGQHLLSR-DYMNLKVFRY  355 (432)
Q Consensus       295 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~---~~~~~~v~~~~~s~dg~~l~s~-~~~~i~iwd~  355 (432)
                      ||+.+..      ..++++. .+  +...   .+..-.....+|+++|....+. -|..|.-|++
T Consensus       285 ~d~~k~~------~~~~~~~-~~--~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         285 IAIDKLD------DLFEDKI-EL--RDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             EEGGGHH------HHTTTSS-CG--GGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             EEeehhh------hHhhccC-Cc--ceEEEeecccccCcccceecCCceEEEcccccceEEEecc
Confidence            9998633      2222210 00  0000   0011233456899999877776 4599999998

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=4.4e-07  Score=76.63  Aligned_cols=195  Identities=10%  Similarity=0.067  Sum_probs=112.2

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCC---eEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                      ..+...+|  ||||+.||......   .+.+.+..++....+....              +......|+|++..++....
T Consensus        39 ~~~~sP~w--SPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~spdg~~i~~~~~  102 (269)
T d2hqsa1          39 QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP--------------RHNGAPAFSPDGSKLAFALS  102 (269)
T ss_dssp             SCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS--------------SCEEEEEECTTSSEEEEEEC
T ss_pred             CceeeeEE--CCCCCEEEEEEeeccCcceeeeecccCceeEEeeee--------------cccccceecCCCCeeeEeee
Confidence            66788999  99999998875433   4666676666654443332              45567789999988876654


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEE-E-cCCe--EEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLR--INLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~-~d~~--i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      .. +...++..... .......  ...........+++++..+.. . .++.  |.+.++.  ......+       ...
T Consensus       103 ~~-~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~--~~~~~~~-------~~~  169 (269)
T d2hqsa1         103 KT-GSLNLYVMDLA-SGQIRQV--TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN--GGAPQRI-------TWE  169 (269)
T ss_dssp             TT-SSCEEEEEETT-TCCEEEC--CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--SSCCEEC-------CCS
T ss_pred             cC-Cccceeecccc-cccceee--eeccccccccccccccccceecccccCCceEeeeecc--cccceee-------ecc
Confidence            22 22222222211 1112121  233444455567777766554 3 5554  4444555  2222222       445


Q ss_pred             CcceEEEEEcCCCCcEEEEEe-CCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe
Q 014005          267 TEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR  345 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~  345 (432)
                      ........|+|++ +.++..+ ..+...+|........   .+....              ........|||||++|+-.
T Consensus       170 ~~~~~~~~~spdg-~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~--------------~~~~~~p~~SPDG~~i~f~  231 (269)
T d2hqsa1         170 GSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGG---VQVLSS--------------TFLDETPSLAPNGTMVIYS  231 (269)
T ss_dssp             SSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCC---EEECCC--------------SSSCEEEEECTTSSEEEEE
T ss_pred             ccccccccccccc-ceeEEEeecCCceeeeEeeccccc---ceEeec--------------CccccceEECCCCCEEEEE
Confidence            5667888999999 6666554 4444444444322211   233322              3456778999999998752


Q ss_pred             -e--C-CeEEEEec
Q 014005          346 -D--Y-MNLKVFRY  355 (432)
Q Consensus       346 -~--~-~~i~iwd~  355 (432)
                       .  . ..|+++++
T Consensus       232 s~~~~~~~l~~~~~  245 (269)
T d2hqsa1         232 SSQGMGSVLNLVST  245 (269)
T ss_dssp             EEETTEEEEEEEET
T ss_pred             EcCCCCcEEEEEEC
Confidence             2  2 57888888

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.96  E-value=1.3e-07  Score=83.94  Aligned_cols=170  Identities=8%  Similarity=0.004  Sum_probs=101.8

Q ss_pred             ccccccCCCCCcceecceeeccceEEEEeecccccceeeEEe-ecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCC
Q 014005          172 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVY-PHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEI  248 (432)
Q Consensus       172 ~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~  248 (432)
                      .+..+.|+|++++++.... ....|.+|+............. ..........++|+|+++++.+.  .+++|.+|+++ 
T Consensus       146 h~h~v~~sPdG~~l~v~d~-g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~-  223 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADL-TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID-  223 (365)
T ss_dssp             CEEEEEECTTSSEEEEEET-TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC-
T ss_pred             cceEEEECCCCCEEEEeeC-CCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec-
Confidence            4568999999998887754 2346777776533222222222 12345678999999999988665  78999999997 


Q ss_pred             CCcee-----eEeecCCC-------CcCCCCcceEEEEEcCCCCcEEEEEeC-C-----CeEEEEEccccccccccceee
Q 014005          249 SDQCF-----NIVDMKPS-------NMDDLTEVITSAEFHPIYCNLLAYSSS-R-----GFVRLVDMRQSALCDHSARIL  310 (432)
Q Consensus       249 ~~~~~-----~~~~~~~~-------~~~~~~~~v~~~~~~p~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~  310 (432)
                      .....     ..+...+.       ...........+.++|+| ++|+++.. +     +.|..|++.......+ ...+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~-~~~~  301 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEK-QLFL  301 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEE-EEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCC-CEEEEEcccCCCccceEEEEEEecCCCceee-EeEe
Confidence            33221     11111111       111233456788999999 77776642 2     2366776653221100 0111


Q ss_pred             cccccccCCccceeeeecceeEEEEcC-CCCEEEEe-eC-CeEEEEec
Q 014005          311 RDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSR-DY-MNLKVFRY  355 (432)
Q Consensus       311 ~~h~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~s~-~~-~~i~iwd~  355 (432)
                      .. .  +.       .......++++| +|++|+.+ .+ +.|.+|++
T Consensus       302 ~~-~--~~-------~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         302 SP-T--PT-------SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EE-C--SS-------CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             eE-E--Ec-------CCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            10 0  00       024567799998 89988776 33 99999998

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.94  E-value=2.7e-07  Score=79.65  Aligned_cols=203  Identities=12%  Similarity=0.128  Sum_probs=132.1

Q ss_pred             CcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhh
Q 014005           33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI  112 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~  112 (432)
                      ..+..++++|+|+++++...+++|..|+.+...                             ..+....           
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~-----------------------------~~~~~~~-----------   67 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-----------------------------QIHATVE-----------   67 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-----------------------------EEEEECS-----------
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE-----------------------------EEEEcCC-----------
Confidence            357889999999999998889988887755432                             2233333           


Q ss_pred             hcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       113 ~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                       ..+.+++|  +++|+++++...++.+..++........                                         
T Consensus        68 -~~~~gla~--~~dG~l~v~~~~~~~~~~~~~~~~~~~~-----------------------------------------  103 (302)
T d2p4oa1          68 -GKVSGLAF--TSNGDLVATGWNADSIPVVSLVKSDGTV-----------------------------------------  103 (302)
T ss_dssp             -SEEEEEEE--CTTSCEEEEEECTTSCEEEEEECTTSCE-----------------------------------------
T ss_pred             -CCcceEEE--cCCCCeEEEecCCceEEEEEecccccce-----------------------------------------
Confidence             67899999  8999988888888888888765432100                                         


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecC----CCCcCCCC
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK----PSNMDDLT  267 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~----~~~~~~~~  267 (432)
                         ..+-+              .......+.+++.++++++++. .++.+..+|.. .+. ...+...    +.......
T Consensus       104 ---~~~~~--------------~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~  164 (302)
T d2p4oa1         104 ---ETLLT--------------LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV-QPS-GSIWLEHPMLARSNSESVF  164 (302)
T ss_dssp             ---EEEEE--------------CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT-TTE-EEEEEECGGGSCSSTTCCS
T ss_pred             ---eeccc--------------cCCccccceeEEccCCCEEeeccccccceeeecc-CCc-ceeEecCCccceeeccCcc
Confidence               00000              1233457889999999888777 78888888887 332 2221111    11112223


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe-e
Q 014005          268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D  346 (432)
Q Consensus       268 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~-~  346 (432)
                      .....+.++.+  .++++.+..+.|..+++....... ....+..              ......++|+++|++.++. .
T Consensus       165 ~~~ngi~~~~~--~l~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~--------------~~~pdgia~d~dG~l~va~~~  227 (302)
T d2p4oa1         165 PAANGLKRFGN--FLYVSNTEKMLLLRIPVDSTDKPG-EPEIFVE--------------QTNIDDFAFDVEGNLYGATHI  227 (302)
T ss_dssp             CSEEEEEEETT--EEEEEETTTTEEEEEEBCTTSCBC-CCEEEEE--------------SCCCSSEEEBTTCCEEEECBT
T ss_pred             cccccccccCC--ceeeecCCCCeEEecccccccccc-ccccccC--------------CCCCcceEECCCCCEEEEEcC
Confidence            35667777643  567777788899988877543211 1122222              2456789999999987775 4


Q ss_pred             CCeEEEEec
Q 014005          347 YMNLKVFRY  355 (432)
Q Consensus       347 ~~~i~iwd~  355 (432)
                      +++|..++.
T Consensus       228 ~~~V~~i~p  236 (302)
T d2p4oa1         228 YNSVVRIAP  236 (302)
T ss_dssp             TCCEEEECT
T ss_pred             CCcEEEECC
Confidence            488888887

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.94  E-value=6.3e-07  Score=77.85  Aligned_cols=241  Identities=11%  Similarity=0.008  Sum_probs=140.2

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      .+-.++|+++|++.++-...+.|.-|+.++++..                           ..+....            
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~---------------------------~~~~~~~------------   81 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK---------------------------RPFVSHK------------   81 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---------------------------EEEECSS------------
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEE---------------------------EEEeCCC------------
Confidence            3568899999997777777888888887665421                           2222233            


Q ss_pred             cceeEEEEEEcCCCCEEEEEeC----CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          114 EKINRVRWCAAPNGSMFILSTN----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                      .....+++  +++|+++++...    .+.+...+..+.............           .....+.+.+++.+.++..
T Consensus        82 ~~p~gla~--~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----------~~~nd~~~d~~G~l~vtd~  148 (319)
T d2dg1a1          82 ANPAAIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA-----------YCIDDMVFDSKGGFYFTDF  148 (319)
T ss_dssp             SSEEEEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC-----------CCEEEEEECTTSCEEEEEC
T ss_pred             CCeeEEEE--CCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcc-----------cCCcceeEEeccceeeccc
Confidence            56788999  899987776543    234455555554443332211111           3455677788887555432


Q ss_pred             eec----cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCc
Q 014005          190 WTE----NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNM  263 (432)
Q Consensus       190 ~~~----~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~  263 (432)
                      ...    .+.+..++..    +..+..+ ...-...+.++|+|+++.|..+  ..+.|..||++..+.............
T Consensus       149 ~~~~~~~~g~v~~~~~d----g~~~~~~-~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~  223 (319)
T d2dg1a1         149 RGYSTNPLGGVYYVSPD----FRTVTPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY  223 (319)
T ss_dssp             CCBTTBCCEEEEEECTT----SCCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred             ccccccCcceeEEEecc----cceeEEE-eeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeec
Confidence            110    2233333332    1222222 1223356789999999977666  688999999874333222110000000


Q ss_pred             CCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEE
Q 014005          264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL  343 (432)
Q Consensus       264 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  343 (432)
                      .........++++++| ++.++....+.|.+||. .|+.    +..+.. |..+.      .+...+++++|.+++..+.
T Consensus       224 ~~~~~~PdGl~vD~~G-~l~Va~~~~g~V~~~~p-~G~~----l~~i~~-P~~~~------~~~~~~~~~~~~~~~~~~~  290 (319)
T d2dg1a1         224 FTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFNK-RGYP----IGQILI-PGRDE------GHMLRSTHPQFIPGTNQLI  290 (319)
T ss_dssp             CCSSSEEEEEEEBTTC-CEEEEEETTTEEEEECT-TSCE----EEEEEC-TTGGG------TCSCBCCEEEECTTSCEEE
T ss_pred             cCCccceeeeeEcCCC-CEEEEEcCCCEEEEECC-CCcE----EEEEeC-CCcCC------CcCceeeeEEEeCCCCEEE
Confidence            1112336789999999 88888888999999995 5665    344433 11100      0134678999999876554


Q ss_pred             E
Q 014005          344 S  344 (432)
Q Consensus       344 s  344 (432)
                      .
T Consensus       291 ~  291 (319)
T d2dg1a1         291 I  291 (319)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.88  E-value=1.3e-06  Score=75.49  Aligned_cols=247  Identities=10%  Similarity=0.041  Sum_probs=143.9

Q ss_pred             cEEEEEEcCCCCEEEEecc-------cceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccc
Q 014005           34 IVSAIEFDKTGDYLAVGDR-------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY  106 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~  106 (432)
                      ..-.++|+|+|+++++...       +++|..||.+++...                            .+......   
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~----------------------------~~~~~~~~---   67 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT----------------------------VICKPEVN---   67 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE----------------------------EEECCEET---
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEE----------------------------EEECCccc---
Confidence            3457899999997776432       356777777665421                            11100000   


Q ss_pred             cchhhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeec-CCCCccccccccccccccccccCCCCCcce
Q 014005          107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM-DHFPFVSSENTLLAEKNFMNEHNPPSFAHG  185 (432)
Q Consensus       107 ~~~~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (432)
                          .....-..+.|  .+++..++++...+.|...+..++........ ....          -....++++.+++.+.
T Consensus        68 ----~~~g~P~Gl~~--~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~----------~~~pndl~~d~~G~ly  131 (314)
T d1pjxa_          68 ----GYGGIPAGCQC--DRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRR----------MQGCNDCAFDYEGNLW  131 (314)
T ss_dssp             ----TEECCEEEEEE--CSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCB----------CBCCCEEEECTTSCEE
T ss_pred             ----cCCCcceeEEE--eCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccc----------cCCCcEEEECCCCCEE
Confidence                00023567899  89998888887777888888876543222111 1100          0124557777877665


Q ss_pred             ecceee-------------ccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCC----EEEEE--cCCeEEEEeC
Q 014005          186 YHLEWT-------------ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE----TFVSA--DDLRINLWNL  246 (432)
Q Consensus       186 ~~~~~~-------------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~l~~~--~d~~i~lwd~  246 (432)
                      ++....             ..+.+..++.+    ++.....  ......+.++|+|++.    .|.++  ..+.|..||+
T Consensus       132 vtd~~~~~~~~~~~~~~~~~~G~v~~~~~d----g~~~~~~--~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~  205 (314)
T d1pjxa_         132 ITAPAGEVAPADYTRSMQEKFGSIYCFTTD----GQMIQVD--TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDI  205 (314)
T ss_dssp             EEECBCBCTTSCCCBTTSSSCEEEEEECTT----SCEEEEE--EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEE
T ss_pred             EecCccCcccccccceeccCCceEEEEeec----CceeEee--CCcceeeeeEECCCCCcceeEEEEEeecccceEEeec
Confidence            542210             02233333322    2222221  2233457889988764    45544  6888999988


Q ss_pred             CCCCceee--EeecCCCCcC-CCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccce
Q 014005          247 EISDQCFN--IVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF  323 (432)
Q Consensus       247 ~~~~~~~~--~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~  323 (432)
                      ...+....  .+.    .+. ........+++.++| ++.++....+.|.+||...++.    ...+...          
T Consensus       206 ~~~g~~~~~~~~~----~~~~~~~~~pdGiavD~~G-nlyVa~~~~g~I~~~dp~~g~~----~~~i~~p----------  266 (314)
T d1pjxa_         206 KGPAKIENKKVWG----HIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQP----KMRIRCP----------  266 (314)
T ss_dssp             EETTEEEEEEEEE----ECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSC----SEEEECS----------
T ss_pred             cCccccceeeEEE----EccccccccceeeEEecCC-cEEEEEcCCCEEEEEeCCCCEE----EEEEECC----------
Confidence            73332211  110    011 122346789999999 8888777889999999887664    3444441          


Q ss_pred             eeeecceeEEEEcCCCCEE-EEeeC-CeEEEEec
Q 014005          324 TEIIASISDIKFANDGQHL-LSRDY-MNLKVFRY  355 (432)
Q Consensus       324 ~~~~~~v~~~~~s~dg~~l-~s~~~-~~i~iwd~  355 (432)
                         ....++++|.||++.| ++... ++|.-.++
T Consensus       267 ---~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         267 ---FEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             ---SSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             ---CCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence               3567899999999744 44433 88888887

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.9e-07  Score=85.67  Aligned_cols=208  Identities=10%  Similarity=0.064  Sum_probs=125.9

Q ss_pred             EEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhccee
Q 014005           38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  117 (432)
Q Consensus        38 ~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~  117 (432)
                      ..|.+++.++.. ..+|.|.+||+.+++..                           ..+..+.  +   .    ...+.
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~---------------------------~l~~~~~--~---~----~~~~~   64 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTST---------------------------VLIEGKK--I---E----SLRAI   64 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCE---------------------------EEECTTT--T---T----TTTCS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEE---------------------------EEEcCcc--c---c----ccccc
Confidence            358888876644 56789999999887531                           1111111  0   0    03456


Q ss_pred             EEEEEEcCCCCEEEEEe---------CCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecc
Q 014005          118 RVRWCAAPNGSMFILST---------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL  188 (432)
Q Consensus       118 ~l~~~~s~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (432)
                      ...|  |||+++++.+.         ..+.+.++|+.++....+.......           ..+....|+|++..++-.
T Consensus        65 ~~~~--SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~-----------~~l~~~~wSPDG~~iafv  131 (465)
T d1xfda1          65 RYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN-----------AKLQYAGWGPKGQQLIFI  131 (465)
T ss_dssp             EEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS-----------CCCSBCCBCSSTTCEEEE
T ss_pred             eeEE--CCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCc-----------cccceeeeccCCceEEEE
Confidence            6778  99999988764         3567899999988866654443333           566778999999998765


Q ss_pred             eeeccceEEEEeecccccceeeEEeecCCCCC-----------------eeEEEeCCCCCEEEEE--cCCeEEEEeCCCC
Q 014005          189 EWTENMATKIANVGNSVHARCQKVYPHAHDFN-----------------INSISNNSDCETFVSA--DDLRINLWNLEIS  249 (432)
Q Consensus       189 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-----------------i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~  249 (432)
                      .   ++.+.+.+...   +...+....+....                 -.++.|||||+.||..  ++..+..+.+...
T Consensus       132 ~---~~nl~~~~~~~---~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~  205 (465)
T d1xfda1         132 F---ENNIYYCAHVG---KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY  205 (465)
T ss_dssp             E---TTEEEEESSSS---SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC
T ss_pred             e---cceEEEEecCC---CceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccc
Confidence            4   56777777652   33333321222221                 2467899999999986  5666655544210


Q ss_pred             C---------------------ceeeEeecCCC----------CcCCCCcceEEEEEcCCCCcEEEEEeC-C---CeEEE
Q 014005          250 D---------------------QCFNIVDMKPS----------NMDDLTEVITSAEFHPIYCNLLAYSSS-R---GFVRL  294 (432)
Q Consensus       250 ~---------------------~~~~~~~~~~~----------~~~~~~~~v~~~~~~p~~~~~l~~~~~-d---g~i~i  294 (432)
                      .                     ..+.++++...          ........+..+.|+|++ ++++.... +   ..+.+
T Consensus       206 ~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~-~~~~~~~nR~q~~~~i~~  284 (465)
T d1xfda1         206 TGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTL  284 (465)
T ss_dssp             SSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEE
T ss_pred             cccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCC-eEEEEEEccccccceEEE
Confidence            0                     01122222111          111122347889999998 76665432 2   26888


Q ss_pred             EEcccccc
Q 014005          295 VDMRQSAL  302 (432)
Q Consensus       295 wd~~~~~~  302 (432)
                      +|..+++.
T Consensus       285 ~d~~tg~~  292 (465)
T d1xfda1         285 CDATTGVC  292 (465)
T ss_dssp             EETTTCCE
T ss_pred             EcCCCCcE
Confidence            89988874

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.81  E-value=4.3e-06  Score=70.90  Aligned_cols=211  Identities=9%  Similarity=0.090  Sum_probs=130.2

Q ss_pred             ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  194 (432)
                      ....+++  +++++.+++-...+.|++||.+..-...+.......        ........+++..+....+......++
T Consensus        24 ~P~gvav--d~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~--------~~~~~p~~~~~~~~~~~~~~~~~~~~~   93 (279)
T d1q7fa_          24 EPSGVAV--NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRD--------SQLLYPNRVAVVRNSGDIIVTERSPTH   93 (279)
T ss_dssp             CEEEEEE--CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSST--------TCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred             CccEEEE--cCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCc--------ccccccccccccccccccceeccCCcc
Confidence            4578999  899988777677889999997643332221111000        000011112222222222222221244


Q ss_pred             eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEE
Q 014005          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA  273 (432)
Q Consensus       195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  273 (432)
                      .+..++..    +.....+..........+++.++++.+++. ..+.+.+++.+  +..+..+.     ...+......+
T Consensus        94 ~i~~~~~~----g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~--g~~~~~~g-----~~~~~~~~~~i  162 (279)
T d1q7fa_          94 QIQIYNQY----GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFG-----CSKHLEFPNGV  162 (279)
T ss_dssp             EEEEECTT----SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEE-----CTTTCSSEEEE
T ss_pred             cccccccc----ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC--Cceeeccc-----cccccccccee
Confidence            56555543    344444434455678899999999888887 77888888876  55555541     13455678899


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEee--CCeEE
Q 014005          274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLK  351 (432)
Q Consensus       274 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~--~~~i~  351 (432)
                      ++.+++ +++++....+.|++||.. ++.    +..+.. ..          ......++++.++|+.+++-.  .++|.
T Consensus       163 ~~d~~g-~i~v~d~~~~~V~~~d~~-G~~----~~~~g~-~g----------~~~~P~giavD~~G~i~Vad~~~~~~v~  225 (279)
T d1q7fa_         163 VVNDKQ-EIFISDNRAHCVKVFNYE-GQY----LRQIGG-EG----------ITNYPIGVGINSNGEILIADNHNNFNLT  225 (279)
T ss_dssp             EECSSS-EEEEEEGGGTEEEEEETT-CCE----EEEESC-TT----------TSCSEEEEEECTTCCEEEEECSSSCEEE
T ss_pred             eeccce-eEEeeeccccceeeeecC-Cce----eeeecc-cc----------cccCCcccccccCCeEEEEECCCCcEEE
Confidence            999998 888888889999999975 443    344432 00          134567899999999877742  36899


Q ss_pred             EEec--CcceeEee
Q 014005          352 VFRY--EPVMTLSF  363 (432)
Q Consensus       352 iwd~--~~~~~~~~  363 (432)
                      +|+.  +.+.++..
T Consensus       226 ~f~~~G~~~~~~~~  239 (279)
T d1q7fa_         226 IFTQDGQLISALES  239 (279)
T ss_dssp             EECTTSCEEEEEEE
T ss_pred             EECCCCCEEEEEeC
Confidence            9998  55555543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.54  E-value=1e-05  Score=69.73  Aligned_cols=204  Identities=12%  Similarity=0.112  Sum_probs=118.4

Q ss_pred             EEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhc
Q 014005           35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE  114 (432)
Q Consensus        35 V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~  114 (432)
                      -..+.|+++|+.|++++..+.|...+.++.....                        ......+..  +         .
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~------------------------~~~~~~g~~--~---------~  117 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEI------------------------AKKDSEGRR--M---------Q  117 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEEC------------------------CSBCTTSCB--C---------B
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEE------------------------Eeccccccc--c---------C
Confidence            4579999999988777776778888876643110                        000001111  0         2


Q ss_pred             ceeEEEEEEcCCCCEEEEEeC---------------CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCC
Q 014005          115 KINRVRWCAAPNGSMFILSTN---------------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP  179 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  179 (432)
                      ..+.+.+  .++|.+.++-..               +|.|..++... +...+....              ..-..++|+
T Consensus       118 ~pndl~~--d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~~--------------~~pNGi~~~  180 (314)
T d1pjxa_         118 GCNDCAF--DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAF--------------QFPNGIAVR  180 (314)
T ss_dssp             CCCEEEE--CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEEE--------------SSEEEEEEE
T ss_pred             CCcEEEE--CCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCCc--------------ceeeeeEEC
Confidence            3577888  889988776432               23344444332 222211100              112345666


Q ss_pred             CCCc----ceecceeeccceEEEEeecccccceeeEEe---ecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCc
Q 014005          180 PSFA----HGYHLEWTENMATKIANVGNSVHARCQKVY---PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ  251 (432)
Q Consensus       180 ~~~~----~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~  251 (432)
                      +++.    .++... ...+.|..+++.........+.+   ..........+++..+|++.++. ..+.|..||.+ .+.
T Consensus       181 ~d~d~~~~~lyv~d-~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~-~g~  258 (314)
T d1pjxa_         181 HMNDGRPYQLIVAE-TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD-GGQ  258 (314)
T ss_dssp             ECTTSCEEEEEEEE-TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT-CBS
T ss_pred             CCCCcceeEEEEEe-ecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC-CCE
Confidence            5543    233221 12567777776533222222222   11223346689999999987777 88999999988 455


Q ss_pred             eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (432)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~  299 (432)
                      ....+       .......++++|.|++..++++.+.+|.|..+++..
T Consensus       259 ~~~~i-------~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         259 PKMRI-------RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CSEEE-------ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEE-------ECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            44444       333456889999999844667777888888888753

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.53  E-value=6.8e-06  Score=68.82  Aligned_cols=195  Identities=8%  Similarity=-0.045  Sum_probs=121.3

Q ss_pred             cEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        34 ~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      ....++++++|+++++....+.+++++-.+...                           .....+ -            
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~---------------------------~~~~~~-~------------   97 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT---------------------------VLPFDG-L------------   97 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCE---------------------------ECCCCS-C------------
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeecccee---------------------------eeeeee-e------------
Confidence            346788999999887776666666654333221                           111111 1            


Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeecc
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN  193 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  193 (432)
                      ....++++  .++++++++-.....+..++..............             .....+++++++...+....  +
T Consensus        98 ~~p~~iav--d~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-------------~~p~~i~~~~~g~~~v~~~~--~  160 (260)
T d1rwia_          98 NYPEGLAV--DTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL-------------NDPDGVAVDNSGNVYVTDTD--N  160 (260)
T ss_dssp             CSEEEEEE--CTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSC-------------CSCCEEEECTTCCEEEEEGG--G
T ss_pred             eecccccc--cccceeEeeccccccccccccccceeeeeeeccc-------------CCcceeeecCCCCEeeeccc--c
Confidence            45678999  8888887776666777777765544222111111             23456777888776555444  6


Q ss_pred             ceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEE
Q 014005          194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS  272 (432)
Q Consensus       194 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  272 (432)
                      +.+..++.+..    ....+..........+++.++|+++++. .++.|..++.. .. ....+      ....-.....
T Consensus       161 ~~i~~~d~~~~----~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~-~~-~~~~~------~~~~~~~P~~  228 (260)
T d1rwia_         161 NRVVKLEAESN----NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG-ST-TSTVL------PFTGLNTPLA  228 (260)
T ss_dssp             TEEEEECTTTC----CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTT-CS-CCEEC------CCCSCCCEEE
T ss_pred             ccccccccccc----eeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCC-CC-eEEEE------ccCCCCCeEE
Confidence            67777776522    2222213445677899999999887777 78888888876 22 22222      0222345789


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEEcc
Q 014005          273 AEFHPIYCNLLAYSSSRGFVRLVDMR  298 (432)
Q Consensus       273 ~~~~p~~~~~l~~~~~dg~i~iwd~~  298 (432)
                      |++++++ +++++-..+++|+.++..
T Consensus       229 i~~d~~g-~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         229 VAVDSDR-TVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             EEECTTC-CEEEEEGGGTEEEEECCC
T ss_pred             EEEeCCC-CEEEEECCCCEEEEEeCC
Confidence            9999998 887776777777766644

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.43  E-value=0.00014  Score=61.63  Aligned_cols=188  Identities=13%  Similarity=0.001  Sum_probs=116.5

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec-
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-  192 (432)
                      ..+.++.+  .+++.+++ ++.+ .+.++|..+++.+.+.......         ....+.++...+++.+.++..... 
T Consensus        59 ~~~~~i~~--~~dg~l~v-a~~~-gl~~~d~~tg~~~~l~~~~~~~---------~~~~~nd~~vd~~G~iw~~~~~~~~  125 (295)
T d2ghsa1          59 FMGSALAK--ISDSKQLI-ASDD-GLFLRDTATGVLTLHAELESDL---------PGNRSNDGRMHPSGALWIGTMGRKA  125 (295)
T ss_dssp             SCEEEEEE--EETTEEEE-EETT-EEEEEETTTCCEEEEECSSTTC---------TTEEEEEEEECTTSCEEEEEEETTC
T ss_pred             CCcEEEEE--ecCCCEEE-EEeC-ccEEeecccceeeEEeeeecCC---------CcccceeeEECCCCCEEEEeccccc
Confidence            56778888  66776655 4444 5889999988876654432211         123566777888887655433211 


Q ss_pred             -cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCcee----eEeecCCCCcCC
Q 014005          193 -NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCF----NIVDMKPSNMDD  265 (432)
Q Consensus       193 -~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~----~~~~~~~~~~~~  265 (432)
                       .+.-.+|.+.   .++.....  ..-...+.++|+++++.+..+  ..+.|..++++......    ..+    ....+
T Consensus       126 ~~~~g~l~~~~---~g~~~~~~--~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~----~~~~~  196 (295)
T d2ghsa1         126 ETGAGSIYHVA---KGKVTKLF--ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVF----IDSTG  196 (295)
T ss_dssp             CTTCEEEEEEE---TTEEEEEE--EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEE----EECTT
T ss_pred             cccceeEeeec---CCcEEEEe--eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEE----eccCc
Confidence             2344556555   33333333  223356789999999987766  67889888876221110    111    01133


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEc-CCCCEE
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDGQHL  342 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l  342 (432)
                      .......++++.+| ++.++.-..+.|..||. .|+.    +..+.- |            ...+++++|- +|.+.|
T Consensus       197 ~~g~pdG~~vD~~G-nlWva~~~~g~V~~~dp-~G~~----~~~i~l-P------------~~~~T~~~FGG~d~~~L  255 (295)
T d2ghsa1         197 IKGGMDGSVCDAEG-HIWNARWGEGAVDRYDT-DGNH----IARYEV-P------------GKQTTCPAFIGPDASRL  255 (295)
T ss_dssp             SSSEEEEEEECTTS-CEEEEEETTTEEEEECT-TCCE----EEEEEC-S------------CSBEEEEEEESTTSCEE
T ss_pred             ccccccceEEcCCC-CEEeeeeCCCceEEecC-CCcE----eeEecC-C------------CCceEEEEEeCCCCCEE
Confidence            44567899999999 88877777889999995 4665    455544 1            2468999996 565544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.42  E-value=3.4e-05  Score=65.95  Aligned_cols=206  Identities=12%  Similarity=0.011  Sum_probs=117.7

Q ss_pred             cCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      .....+.+++|+|+|+++++...++.+..++.......                          ...+.....       
T Consensus        65 ~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~-------  111 (302)
T d2p4oa1          65 TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT--------------------------VETLLTLPD-------  111 (302)
T ss_dssp             ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC--------------------------EEEEEECTT-------
T ss_pred             cCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc--------------------------eeeccccCC-------
Confidence            44668999999999999998888888888887654311                          011111110       


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecce
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE  189 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (432)
                         ....+.+.+  .++++++++.+.++.+..++...+..............   ...........+.++  +..++...
T Consensus       112 ---~~~~n~i~~--~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ngi~~~--~~~l~~~~  181 (302)
T d2p4oa1         112 ---AIFLNGITP--LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS---NSESVFPAANGLKRF--GNFLYVSN  181 (302)
T ss_dssp             ---CSCEEEEEE--SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS---STTCCSCSEEEEEEE--TTEEEEEE
T ss_pred             ---ccccceeEE--ccCCCEEeeccccccceeeeccCCcceeEecCCcccee---eccCccccccccccc--CCceeeec
Confidence               055788888  89998888888888888888877653322211100000   000000111122222  22222221


Q ss_pred             eeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       190 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      . ..+.+..++............+  ........+++.++|+++++. .++.|..++.+  ++.....     .....-.
T Consensus       182 ~-~~~~i~~~~~~~~~~~~~~~~~--~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~--G~~~~~~-----~~~~~~~  251 (302)
T d2p4oa1         182 T-EKMLLLRIPVDSTDKPGEPEIF--VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD--RSTTIIA-----QAEQGVI  251 (302)
T ss_dssp             T-TTTEEEEEEBCTTSCBCCCEEE--EESCCCSSEEEBTTCCEEEECBTTCCEEEECTT--CCEEEEE-----CGGGTCT
T ss_pred             C-CCCeEEeccccccccccccccc--cCCCCCcceEECCCCCEEEEEcCCCcEEEECCC--CCEEEEE-----ecCCCCC
Confidence            1 1556666666543222222222  123456789999999977777 78999998877  4333322     1122334


Q ss_pred             ceEEEEE---cCCCCcEEEEEeCC
Q 014005          269 VITSAEF---HPIYCNLLAYSSSR  289 (432)
Q Consensus       269 ~v~~~~~---~p~~~~~l~~~~~d  289 (432)
                      ..++++|   ++|+ +.|+.++..
T Consensus       252 ~pt~vafg~~~~D~-~~Lyvtt~~  274 (302)
T d2p4oa1         252 GSTAVAFGQTEGDC-TAIYVVTNG  274 (302)
T ss_dssp             TEEEEEECCSTTTT-TEEEEEECT
T ss_pred             CceEEEEcCCCCCC-CEEEEECCC
Confidence            5789999   6677 666655544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.41  E-value=6.5e-05  Score=64.69  Aligned_cols=215  Identities=8%  Similarity=0.019  Sum_probs=124.5

Q ss_pred             ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  194 (432)
                      .+..++|  .++|+++++-...+.|..|+..++.........             ......+++++++.+++........
T Consensus        41 ~lEG~~~--D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~-------------~~~p~gla~~~dG~l~va~~~~~~~  105 (319)
T d2dg1a1          41 QLEGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH-------------KANPAAIKIHKDGRLFVCYLGDFKS  105 (319)
T ss_dssp             CEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEEECS-------------SSSEEEEEECTTSCEEEEECTTSSS
T ss_pred             CcEeCEE--CCCCCEEEEECCCCEEEEEECCCCeEEEEEeCC-------------CCCeeEEEECCCCCEEEEecCCCcc
Confidence            3568899  899997777778899999988776543332111             1345678888988766653221112


Q ss_pred             eEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEE-c------CCeEEEEeCCCCCceeeEeecCCCCcCCC
Q 014005          195 ATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDL  266 (432)
Q Consensus       195 ~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~  266 (432)
                      ...++.+... ......... .......+.+++.++|++.++. .      .+.+..++.+  +..+..+       ...
T Consensus       106 ~~~i~~~~~~-~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d--g~~~~~~-------~~~  175 (319)
T d2dg1a1         106 TGGIFAATEN-GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--FRTVTPI-------IQN  175 (319)
T ss_dssp             CCEEEEECTT-SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT--SCCEEEE-------EEE
T ss_pred             ceeEEEEcCC-CceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc--cceeEEE-------eec
Confidence            2233333211 111112220 1223457889999999877764 2      1234444444  3333322       122


Q ss_pred             CcceEEEEEcCCCCcEE-EEEeCCCeEEEEEccccccccccceeeccc-ccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          267 TEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDA-AESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       267 ~~~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h-~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      -...+.++|+|++ +.| ++-+..+.|..||+......   ....... .....       .......+++.++|++.++
T Consensus       176 ~~~pnGia~s~dg-~~lyvad~~~~~I~~~d~~~~g~~---~~~~~~~~~~~~~-------~~~~PdGl~vD~~G~l~Va  244 (319)
T d2dg1a1         176 ISVANGIALSTDE-KVLWVTETTANRLHRIALEDDGVT---IQPFGATIPYYFT-------GHEGPDSCCIDSDDNLYVA  244 (319)
T ss_dssp             ESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSSS---EEEEEEEEEEECC-------SSSEEEEEEEBTTCCEEEE
T ss_pred             cceeeeeeecccc-ceEEEecccCCceEEEEEcCCCce---eccccceeeeccC-------CccceeeeeEcCCCCEEEE
Confidence            2346789999999 654 55567889999998643211   1111110 00000       0123567999999997777


Q ss_pred             e-eCCeEEEEec--CcceeEeecc
Q 014005          345 R-DYMNLKVFRY--EPVMTLSFCG  365 (432)
Q Consensus       345 ~-~~~~i~iwd~--~~~~~~~~~~  365 (432)
                      . ..+.|.+||.  +.+..+..+.
T Consensus       245 ~~~~g~V~~~~p~G~~l~~i~~P~  268 (319)
T d2dg1a1         245 MYGQGRVLVFNKRGYPIGQILIPG  268 (319)
T ss_dssp             EETTTEEEEECTTSCEEEEEECTT
T ss_pred             EcCCCEEEEECCCCcEEEEEeCCC
Confidence            5 4499999999  7777777654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.37  E-value=1.8e-05  Score=66.69  Aligned_cols=230  Identities=11%  Similarity=0.037  Sum_probs=119.7

Q ss_pred             EEcCC--CCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhcce
Q 014005           39 EFDKT--GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI  116 (432)
Q Consensus        39 ~fsp~--g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v  116 (432)
                      ..+|+  |+.+|..+ +|.|.+.|+.+++.                            +.+..+.            ..+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~----------------------------~~Lt~~~------------~~~   43 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST----------------------------RKIVSNL------------GVI   43 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE----------------------------EEEECSS------------SEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE----------------------------EEEecCC------------Ccc
Confidence            35688  99988764 45788888887653                            3455555            677


Q ss_pred             eEEEEEEcCCCCEEEEEeC-C-----CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          117 NRVRWCAAPNGSMFILSTN-D-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                      ...+|  ||||+.|+.... +     ..|.+++..+++...+.......       ...........|+|+++.++....
T Consensus        44 ~~p~~--SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~-------~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          44 NNARF--FPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKS-------TGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             EEEEE--CTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEE-------ETTEECSEEEEECTTCCEEEEECT
T ss_pred             cCEEE--CCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCc-------cCccccccccccCCCCCEEEEEEc
Confidence            88999  999999887632 2     24677777777755543221100       001123456778899887765433


Q ss_pred             ec----cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCe-----------EEEEeCCCCCceee
Q 014005          191 TE----NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR-----------INLWNLEISDQCFN  254 (432)
Q Consensus       191 ~~----~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~-----------i~lwd~~~~~~~~~  254 (432)
                      ..    .......+..   ......    .+........+.+++..++.. .+..           ....... ......
T Consensus       115 ~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  186 (281)
T d1k32a2         115 MQPFSSMTCLYRVEND---GINFVP----LNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVN-SGAFKK  186 (281)
T ss_dssp             TSSSTTCCEEEEEEGG---GTEEEE----CCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEE-TTEEEE
T ss_pred             cCCCccceeeeeecCC---CceeEE----ecCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeecc-ccceee
Confidence            11    1122333332   222211    122223333333333333332 1110           1111111 111111


Q ss_pred             EeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC--CeEEEEEccccccccccceeecccccccCCccceeeeecceeE
Q 014005          255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD  332 (432)
Q Consensus       255 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~  332 (432)
                      .        ...........++++.  ++.....+  ..|.++|+.+++.     +.+..+              .....
T Consensus       187 ~--------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~g~~~-----~~lt~~--------------~~~~~  237 (281)
T d1k32a2         187 I--------VDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLDGKDL-----RKHTSF--------------TDYYP  237 (281)
T ss_dssp             E--------ECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETTSCSC-----EECCCC--------------CSSCE
T ss_pred             c--------cCCccccceeeeeccc--cceecccccccceEEEeCCCCce-----EEeecC--------------CCccc
Confidence            1        1222334455566553  33333333  3577778876553     444331              22233


Q ss_pred             EEEcCCCCEEEEeeCCeEEEEec
Q 014005          333 IKFANDGQHLLSRDYMNLKVFRY  355 (432)
Q Consensus       333 ~~~s~dg~~l~s~~~~~i~iwd~  355 (432)
                      ..|||||+.|+-..++.|+++|+
T Consensus       238 ~~~SpDG~~I~f~~~~~l~~~d~  260 (281)
T d1k32a2         238 RHLNTDGRRILFSKGGSIYIFNP  260 (281)
T ss_dssp             EEEEESSSCEEEEETTEEEEECT
T ss_pred             ccCcCCCCEEEEEeCCEEEEEEC
Confidence            46999999998876688999999

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.7e-05  Score=71.00  Aligned_cols=161  Identities=12%  Similarity=0.168  Sum_probs=97.1

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee-------e
Q 014005          119 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW-------T  191 (432)
Q Consensus       119 l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~  191 (432)
                      ..|  .+++.++. -..+|.|.+||+.+++...+.......          .-.+....++|++++++....       .
T Consensus        22 ~~W--~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~----------~~~~~~~~~SpD~~~vl~~~~~~~~~r~s   88 (465)
T d1xfda1          22 AKW--ISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIE----------SLRAIRYEISPDREYALFSYNVEPIYQHS   88 (465)
T ss_dssp             CCB--SSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTT----------TTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred             CEE--eCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCcccc----------ccccceeEECCCCCeEEEEEcccceeEee
Confidence            468  67776554 456788999999988755443332111          134556678999998776542       1


Q ss_pred             ccceEEEEeecccccceeeEEee-cCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeec-CCC-CcCCCC-
Q 014005          192 ENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDM-KPS-NMDDLT-  267 (432)
Q Consensus       192 ~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~-~~~-~~~~~~-  267 (432)
                      ..+...++|+..   +....... ......+....|+|+|+.+|...++.|.+.+.. .+...++..- ... .+.+.. 
T Consensus        89 ~~~~~~i~d~~~---~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~-~~~~~~lt~~g~~~~i~nG~~d  164 (465)
T d1xfda1          89 YTGYYVLSKIPH---GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHV-GKQAIRVVSTGKEGVIYNGLSD  164 (465)
T ss_dssp             CCSEEEEEESSS---CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSS-SSCCEEEECCCBTTTEEEEECC
T ss_pred             ccccEEEEEccC---CceeeccCccCCccccceeeeccCCceEEEEecceEEEEecC-CCceEEEecccCcceeeccccc
Confidence            146788889873   33322210 233445667899999999998888889998887 4444433210 000 000111 


Q ss_pred             --------cceEEEEEcCCCCcEEEEEe-CCCeEEEEEc
Q 014005          268 --------EVITSAEFHPIYCNLLAYSS-SRGFVRLVDM  297 (432)
Q Consensus       268 --------~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~  297 (432)
                              ..-..+-||||| +.||... .+..|..+.+
T Consensus       165 ~vyeee~~~~~~a~~WSPDg-k~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         165 WLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             HHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEE
T ss_pred             hhhhhhhccccceEEECCCC-CeEEEEEecccccceeec
Confidence                    112567899999 8888765 3344545443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.95  E-value=0.0024  Score=53.76  Aligned_cols=197  Identities=14%  Similarity=0.123  Sum_probs=120.5

Q ss_pred             ccCCCcEEEEEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        29 ~~h~~~V~~~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      ......+.++.+.++|.+++++ .+ .+.++|..+++..                         .+.......+      
T Consensus        55 ~~~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~-------------------------~l~~~~~~~~------  101 (295)
T d2ghsa1          55 HALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT-------------------------LHAELESDLP------  101 (295)
T ss_dssp             EECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE-------------------------EEECSSTTCT------
T ss_pred             EECCCCcEEEEEecCCCEEEEE-eC-ccEEeecccceee-------------------------EEeeeecCCC------
Confidence            3446678999999999877654 44 5888898876521                         1111111110      


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEEeC----CCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcc
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILSTN----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH  184 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  184 (432)
                          ...++.+.+  .++|++.++...    .+.-.+|.+..++...+..-.              .....+++++++..
T Consensus       102 ----~~~~nd~~v--d~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~--------------~~~Ng~~~s~d~~~  161 (295)
T d2ghsa1         102 ----GNRSNDGRM--HPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI--------------SIPNSICFSPDGTT  161 (295)
T ss_dssp             ----TEEEEEEEE--CTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE--------------SSEEEEEECTTSCE
T ss_pred             ----cccceeeEE--CCCCCEEEEeccccccccceeEeeecCCcEEEEeecc--------------CCcceeeecCCCce
Confidence                146788888  899987776542    234567777666644433211              23356788888876


Q ss_pred             eecceeeccceEEEEeecccc---ccee-eEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecC
Q 014005          185 GYHLEWTENMATKIANVGNSV---HARC-QKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK  259 (432)
Q Consensus       185 ~~~~~~~~~~~v~i~d~~~~~---~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~  259 (432)
                      ++.... ..+.|..+++....   ..+. ......+..+....+++..+|++.++. ..+.|..||.+  ++.+..+.+ 
T Consensus       162 l~~~dt-~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~--G~~~~~i~l-  237 (295)
T d2ghsa1         162 GYFVDT-KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GNHIARYEV-  237 (295)
T ss_dssp             EEEEET-TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CCEEEEEEC-
T ss_pred             EEEeec-ccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC--CcEeeEecC-
Confidence            554432 15677777765321   1111 111113445668889999999877777 78899999976  666666622 


Q ss_pred             CCCcCCCCcceEEEEEc-CCCCcEEEEEeC
Q 014005          260 PSNMDDLTEVITSAEFH-PIYCNLLAYSSS  288 (432)
Q Consensus       260 ~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~  288 (432)
                            ....+++++|- |+...+++|...
T Consensus       238 ------P~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         238 ------PGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             ------SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             ------CCCceEEEEEeCCCCCEEEEEECC
Confidence                  23458999995 666355555443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.34  E-value=0.017  Score=49.98  Aligned_cols=78  Identities=13%  Similarity=0.036  Sum_probs=50.5

Q ss_pred             CeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCC----CcCCCCcceEEEEEcCCCCcEEEEEeCCCeEE
Q 014005          220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPS----NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR  293 (432)
Q Consensus       220 ~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~  293 (432)
                      ....+.++|||++++++  -+.++.++|++.-...+.. .+.+.    .-....-.....+|+..| +...+---|..|.
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~-~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~  353 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE-NADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVV  353 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS-CC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEE
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcc-cCCccccEEeecccCcCccccccCCCc-eEEEEeeccceEE
Confidence            45678999999999876  7999999999621111100 00000    001123345677899888 6555556999999


Q ss_pred             EEEccc
Q 014005          294 LVDMRQ  299 (432)
Q Consensus       294 iwd~~~  299 (432)
                      -|++..
T Consensus       354 kw~~~~  359 (459)
T d1fwxa2         354 KWNIED  359 (459)
T ss_dssp             EEEHHH
T ss_pred             EEecch
Confidence            999864

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.09  E-value=0.0018  Score=53.77  Aligned_cols=99  Identities=15%  Similarity=0.063  Sum_probs=64.1

Q ss_pred             EeCCC--CCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeC-CC-----eEEEEE
Q 014005          225 SNNSD--CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG-----FVRLVD  296 (432)
Q Consensus       225 ~~~~~--~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg-----~i~iwd  296 (432)
                      ..+|+  |+.++...++.|.+.|+. ++...+ +       ..+.+.+...+||||| +.||.... ++     .|.+++
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~-~g~~~~-L-------t~~~~~~~~p~~SPDG-~~iaf~~~~~~~~~~~~i~~~~   74 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLK-SGSTRK-I-------VSNLGVINNARFFPDG-RKIAIRVMRGSSLNTADLYFYN   74 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETT-TCCEEE-E-------ECSSSEEEEEEECTTS-SEEEEEEEESTTCCEEEEEEEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECC-CCCEEE-E-------ecCCCcccCEEECCCC-CEEEEEEeeCCCCCceEEEEEE
Confidence            35688  998887767778888998 454433 2       4556678899999999 77776542 22     477777


Q ss_pred             ccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      ..+++.     +.+..+...      ............|+|||+.|+.
T Consensus        75 ~~~g~~-----~~lt~~~~~------~~~~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          75 GENGEI-----KRITYFSGK------STGRRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             TTTTEE-----EECCCCCEE------EETTEECSEEEEECTTCCEEEE
T ss_pred             ecCCce-----EEeeecCCC------ccCccccccccccCCCCCEEEE
Confidence            777664     333221000      0001234567899999998886

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.04  E-value=0.06  Score=44.03  Aligned_cols=205  Identities=12%  Similarity=0.191  Sum_probs=124.6

Q ss_pred             EEEcCCCCEEEEecccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhhccee
Q 014005           38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN  117 (432)
Q Consensus        38 ~~fsp~g~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~v~  117 (432)
                      .-.+|..+.||.-+ ..++.|+|+++++                              .++.|..          ++.|.
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~------------------------------klks~~~----------~e~Vv  106 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKS------------------------------KMKAHTM----------TDDVT  106 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTE------------------------------EEEEEEC----------SSCCC
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhh------------------------------hhceEEc----------CCCcE
Confidence            34568788777655 4589999998875                              3344431          16677


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec-----
Q 014005          118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE-----  192 (432)
Q Consensus       118 ~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----  192 (432)
                      --.|  - +.+.|+..+ +..|+-|++++.. ....-+..++       ...+..|..-..+++.++++..+...     
T Consensus       107 fWkW--i-s~~~L~lVT-~taVYHW~~~g~s-~P~k~fdR~~-------~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i  174 (327)
T d1utca2         107 FWKW--I-SLNTVALVT-DNAVYHWSMEGES-QPVKMFDRHS-------SLAGCQIINYRTDAKQKWLLLTGISAQQNRV  174 (327)
T ss_dssp             EEEE--S-SSSEEEEEC-SSEEEEEESSSSC-CCEEEEECCG-------GGTTCEEEEEEECTTSCEEEEEEEEEETTEE
T ss_pred             EEEe--c-CCCEEEEEc-CCceEEEcccCCC-Cchhhhhhcc-------cccCceEEEEEECCCCCEEEEEeEecCCCce
Confidence            7788  3 445666655 4679999996432 2222233222       22356777888889999887766533     


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCC---CEEEEE----cCCeEEEEeCCCCCc---e--eeEeecCC
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC---ETFVSA----DDLRINLWNLEISDQ---C--FNIVDMKP  260 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~----~d~~i~lwd~~~~~~---~--~~~~~~~~  260 (432)
                      .|.+.+|..+.    +..+.+ .+|-.....+.+.-+.   ..++.+    ..+++++-++.....   .  .+..++.-
T Consensus       175 ~G~mQLYS~er----~~sQ~i-eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~f  249 (327)
T d1utca2         175 VGAMQLYSVDR----KVSQPI-EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFF  249 (327)
T ss_dssp             EEEEEEEETTT----TEEEEE-CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCC
T ss_pred             eEEEEEEEecc----CcCccc-cceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEEC
Confidence            56788888762    233444 6665555454443221   234443    246888888863221   1  11111111


Q ss_pred             CCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       261 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      . -+...+-.-++..++.. .++..-+.-|.+.+||+.++..
T Consensus       250 p-pea~~DFPvamqvs~ky-giiyviTK~G~i~lyDleTgt~  289 (327)
T d1utca2         250 P-PEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTC  289 (327)
T ss_dssp             C-TTCTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCE
T ss_pred             C-ccccCCcEEEEEeeccC-CEEEEEecCcEEEEEEcccccE
Confidence            0 01223445688888887 7888899999999999999874

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.60  E-value=0.11  Score=44.84  Aligned_cols=73  Identities=10%  Similarity=0.004  Sum_probs=47.0

Q ss_pred             eEEEEEEcCCCCEEEEEeCC-CeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec---
Q 014005          117 NRVRWCAAPNGSMFILSTND-KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE---  192 (432)
Q Consensus       117 ~~l~~~~s~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---  192 (432)
                      ....+  .+++..++.|+.+ ..+.+||..+........+....            .....+..+++..++.++...   
T Consensus        79 ~~~~~--~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r------------~~~~~~~~~dG~v~v~GG~~~~~~  144 (387)
T d1k3ia3          79 PGISM--DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR------------GYQSSATMSDGRVFTIGGSWSGGV  144 (387)
T ss_dssp             CEEEE--CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC------------SSCEEEECTTSCEEEECCCCCSSS
T ss_pred             eEEEE--ecCCcEEEeecCCCcceeEecCccCcccccccccccc------------cccceeeecCCceeeecccccccc
Confidence            34566  7899888888654 68999999988766554433222            222344556777777766422   


Q ss_pred             -cceEEEEeecc
Q 014005          193 -NMATKIANVGN  203 (432)
Q Consensus       193 -~~~v~i~d~~~  203 (432)
                       -..+.+||...
T Consensus       145 ~~~~v~~yd~~~  156 (387)
T d1k3ia3         145 FEKNGEVYSPSS  156 (387)
T ss_dssp             CCCCEEEEETTT
T ss_pred             ccceeeeecCCC
Confidence             23678888774

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.56  E-value=0.14  Score=41.59  Aligned_cols=193  Identities=8%  Similarity=0.038  Sum_probs=110.0

Q ss_pred             cceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeec
Q 014005          114 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE  192 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (432)
                      ..+..++|  ....+.+..+ ..++.|+..++.++..+.+.....             ..+..++++..+..++.... .
T Consensus        36 ~~~~~ld~--D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~-------------~~p~~iAvD~~~~~lY~~d~-~   99 (263)
T d1npea_          36 KVIIGLAF--DCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL-------------GSPEGIALDHLGRTIFWTDS-Q   99 (263)
T ss_dssp             EEEEEEEE--ETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC-------------CCEEEEEEETTTTEEEEEET-T
T ss_pred             CcEEEEEE--EeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecc-------------ccccEEEEeccCCeEEEecc-C
Confidence            55778889  6666666665 456788888887665444432211             23556666655555543322 1


Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCe--EEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~--i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      .+.|.+.++...   .+.... ......+..++++|...++...  ..+.  |.--+++  +.....+      ....-.
T Consensus       100 ~~~I~~~~~dg~---~~~~l~-~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d--G~~~~~i------~~~~~~  167 (263)
T d1npea_         100 LDRIEVAKMDGT---QRRVLF-DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD--GTNRRIL------AQDNLG  167 (263)
T ss_dssp             TTEEEEEETTSC---SCEEEE-CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT--SCCCEEE------ECTTCS
T ss_pred             CCEEEEEecCCc---eEEEEe-cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCC--CCCceee------eeeccc
Confidence            557777777632   222222 3444678899999987777655  2233  4444555  3322222      022234


Q ss_pred             ceEEEEEcCCCCcEEEEE-eCCCeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEe--
Q 014005          269 VITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--  345 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~--  345 (432)
                      ..+.+++++.+ +.|..+ ...+.|...|+.....    ...+.+              .....++++.  +.+|.-.  
T Consensus       168 ~P~glaiD~~~-~~lYw~d~~~~~I~~~~~~g~~~----~~v~~~--------------~~~P~~lav~--~~~lYwtd~  226 (263)
T d1npea_         168 LPNGLTFDAFS-SQLCWVDAGTHRAECLNPAQPGR----RKVLEG--------------LQYPFAVTSY--GKNLYYTDW  226 (263)
T ss_dssp             CEEEEEEETTT-TEEEEEETTTTEEEEEETTEEEE----EEEEEC--------------CCSEEEEEEE--TTEEEEEET
T ss_pred             ccceEEEeecC-cEEEEEeCCCCEEEEEECCCCCe----EEEECC--------------CCCcEEEEEE--CCEEEEEEC
Confidence            57899999887 555444 5678899999875443    123333              1223467775  3344333  


Q ss_pred             eCCeEEEEec
Q 014005          346 DYMNLKVFRY  355 (432)
Q Consensus       346 ~~~~i~iwd~  355 (432)
                      ..+.|...|.
T Consensus       227 ~~~~I~~~~~  236 (263)
T d1npea_         227 KTNSVIAMDL  236 (263)
T ss_dssp             TTTEEEEEET
T ss_pred             CCCEEEEEEC
Confidence            3377777776

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.48  E-value=0.16  Score=41.26  Aligned_cols=202  Identities=12%  Similarity=0.051  Sum_probs=117.8

Q ss_pred             CcEEEEEEcCCCCEEEEe-cccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhh
Q 014005           33 DIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE  111 (432)
Q Consensus        33 ~~V~~~~fsp~g~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~  111 (432)
                      ..+.+++|++..+.|.-. ..++.|+..++++....                           ..+....          
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~---------------------------~v~~~~~----------   78 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT---------------------------TIIRQDL----------   78 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE---------------------------EEECTTC----------
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE---------------------------EEEEecc----------
Confidence            357789999887766654 45577888787665321                           1122222          


Q ss_pred             hhcceeEEEEEEcCCCCEEE-EEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceeccee
Q 014005          112 IEEKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW  190 (432)
Q Consensus       112 ~~~~v~~l~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  190 (432)
                        ..+.++++  ..-+..|. +-...+.|.+.++.....+.+.....             .....++.+|...+++....
T Consensus        79 --~~p~~iAv--D~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l-------------~~p~~l~vdp~~g~ly~t~~  141 (263)
T d1npea_          79 --GSPEGIAL--DHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL-------------VNPRGIVTDPVRGNLYWTDW  141 (263)
T ss_dssp             --CCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-------------SSEEEEEEETTTTEEEEEEC
T ss_pred             --ccccEEEE--eccCCeEEEeccCCCEEEEEecCCceEEEEecccc-------------cCCcEEEEecccCcEEEeec
Confidence              45677888  55455555 44567799999988665443332211             23556777777666654432


Q ss_pred             eccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCc
Q 014005          191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE  268 (432)
Q Consensus       191 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~  268 (432)
                      . .+..+|+.....  +.....+....-.....+++.+.++.|..+  ..+.|...|++ ......++       .+.. 
T Consensus       142 ~-~~~~~I~r~~~d--G~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~-g~~~~~v~-------~~~~-  209 (263)
T d1npea_         142 N-RDNPKIETSHMD--GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA-QPGRRKVL-------EGLQ-  209 (263)
T ss_dssp             C-SSSCEEEEEETT--SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-EEEEEEEE-------ECCC-
T ss_pred             C-CCCcEEEEecCC--CCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECC-CCCeEEEE-------CCCC-
Confidence            1 123345543322  121122213344567899999887777655  67889888988 33322222       2222 


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       269 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      ...++++. .+ .+..+-...+.|...|..+++.
T Consensus       210 ~P~~lav~-~~-~lYwtd~~~~~I~~~~~~~g~~  241 (263)
T d1npea_         210 YPFAVTSY-GK-NLYYTDWKTNSVIAMDLAISKE  241 (263)
T ss_dssp             SEEEEEEE-TT-EEEEEETTTTEEEEEETTTTEE
T ss_pred             CcEEEEEE-CC-EEEEEECCCCEEEEEECCCCcc
Confidence            24577776 33 5555555778899999887765

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.10  E-value=0.24  Score=41.83  Aligned_cols=75  Identities=5%  Similarity=-0.050  Sum_probs=45.1

Q ss_pred             CCCCeeEEEeCCCCCEEEEE-c---------------CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCC
Q 014005          217 HDFNINSISNNSDCETFVSA-D---------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC  280 (432)
Q Consensus       217 ~~~~i~~~~~~~~~~~l~~~-~---------------d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  280 (432)
                      .....+++++..++.+++|- .               -....+|..+ .+.. ++.       ...-...+.++++|++.
T Consensus       148 ~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~-~~~~-~~~-------~~~l~~pNGI~~s~d~~  218 (340)
T d1v04a_         148 LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS-PNDV-RVV-------AEGFDFANGINISPDGK  218 (340)
T ss_dssp             TCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC-SSCE-EEE-------EEEESSEEEEEECTTSS
T ss_pred             cccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc-CCce-EEE-------cCCCCccceeEECCCCC
Confidence            33457778877777777762 1               1233444444 2222 221       12234578999999984


Q ss_pred             cEEEEEeCCCeEEEEEcccc
Q 014005          281 NLLAYSSSRGFVRLVDMRQS  300 (432)
Q Consensus       281 ~~l~~~~~dg~i~iwd~~~~  300 (432)
                      .++++-+..++|+.|++...
T Consensus       219 ~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         219 YVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             EEEEEEGGGTEEEEEEECTT
T ss_pred             EEEEEeCCCCeEEEEEeCCC
Confidence            44555567889999998743

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.84  E-value=0.48  Score=40.80  Aligned_cols=149  Identities=9%  Similarity=0.069  Sum_probs=81.0

Q ss_pred             cceEEEEeecccccceeeEEeecCCCCCeeEEEeC--CCCCEEEEE-cC------------------CeEEEEeCCCCCc
Q 014005          193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNN--SDCETFVSA-DD------------------LRINLWNLEISDQ  251 (432)
Q Consensus       193 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~-~d------------------~~i~lwd~~~~~~  251 (432)
                      ++.|.+-|++   ..++.+.........+..++..  |+..+++.+ .+                  +.+..+|.+. .+
T Consensus       109 n~RVAvIdl~---~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~t-m~  184 (459)
T d1fwxa2         109 NTRVARVRCD---VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADK-WE  184 (459)
T ss_dssp             TTEEEEEETT---TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTT-TE
T ss_pred             CceEEEEECc---ceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCC-ce
Confidence            5678888887   5566665433445566766665  455566654 32                  2355677773 33


Q ss_pred             eeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCC---------------eEEEEEcccccccc--------ccce
Q 014005          252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---------------FVRLVDMRQSALCD--------HSAR  308 (432)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---------------~i~iwd~~~~~~~~--------~~~~  308 (432)
                      ....+..     .   .....+.++|+| +++++.+.+.               .+.+++........        .-..
T Consensus       185 V~~QV~V-----~---g~ld~~~~s~dG-K~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         185 VAWQVLV-----S---GNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EEEEEEE-----S---SCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEEEeee-----C---CChhccccCCCC-CEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            3322211     1   235578999999 7777765331               34555543211100        0011


Q ss_pred             eecccccccCC-ccceeeeecceeEEEEcCCCCEEEEeeC--CeEEEEec
Q 014005          309 ILRDAAESHGS-KSFFTEIIASISDIKFANDGQHLLSRDY--MNLKVFRY  355 (432)
Q Consensus       309 ~~~~h~~~~~~-~~~~~~~~~~v~~~~~s~dg~~l~s~~~--~~i~iwd~  355 (432)
                      .+.. ...+.. ...+-........+.++|||+|++.++.  .++-++|+
T Consensus       256 VVD~-~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~  304 (459)
T d1fwxa2         256 VVDG-RKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDV  304 (459)
T ss_dssp             EEEC-SGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred             eecc-cccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEe
Confidence            1111 000000 0111222456778999999999998643  99999999

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.47  Score=38.34  Aligned_cols=211  Identities=9%  Similarity=-0.037  Sum_probs=115.1

Q ss_pred             cCCCcEEEEEEcCCCCEEEEec-ccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccc
Q 014005           30 QDVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK  108 (432)
Q Consensus        30 ~h~~~V~~~~fsp~g~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~  108 (432)
                      .....+.+++|++..+.|.-.. .++.|.-.+++.....                       ......+....       
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~-----------------------~~~~~~~~~~~-------   76 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------------------SSYDTVISRDI-------   76 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------------CEEEECSSC-------
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC-----------------------cceEEEEeCCC-------
Confidence            4455678899998877665543 4556665555442210                       00001111111       


Q ss_pred             hhhhhcceeEEEEEEcCCCCEEEEE-eCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceec
Q 014005          109 SLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH  187 (432)
Q Consensus       109 ~~~~~~~v~~l~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  187 (432)
                           ..+.+|++  .+.+..|..+ ...+.|.+.++.......+.....             .....++.+|...++..
T Consensus        77 -----~~p~glAv--D~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~-------------~~P~~l~vd~~~g~ly~  136 (266)
T d1ijqa1          77 -----QAPDGLAV--DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG-------------SKPRAIVVDPVHGFMYW  136 (266)
T ss_dssp             -----SCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT-------------CCEEEEEEETTTTEEEE
T ss_pred             -----CCcceEEE--eeccceEEEEecCCCEEEeEecCCceEEEEEcCCC-------------CCcceEEEEcccCeEEE
Confidence                 44567777  5545555444 566789999998765443322211             33456677766555554


Q ss_pred             ceeeccceEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCC
Q 014005          188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDD  265 (432)
Q Consensus       188 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~  265 (432)
                      ......+.|.-.++.    +.....+....-...+.+++.+.++.|..+  ..+.|...+++ +........     ...
T Consensus       137 ~~~~~~~~I~r~~~d----Gs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~d-G~~~~~~~~-----~~~  206 (266)
T d1ijqa1         137 TDWGTPAKIKKGGLN----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILE-----DEK  206 (266)
T ss_dssp             EECSSSCEEEEEETT----SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEE-----CTT
T ss_pred             eccCCCcceeEeccC----CCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECC-CCCEEEEEe-----CCC
Confidence            433123344444443    222222213344667899999987777765  67889988988 333222220     012


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       266 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      ......++++.. + .+..+-..++.|...+..+++.
T Consensus       207 ~~~~p~~lav~~-~-~ly~td~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         207 RLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSD  241 (266)
T ss_dssp             TTSSEEEEEEET-T-EEEEEETTTTEEEEEETTTCCC
T ss_pred             cccccEEEEEEC-C-EEEEEECCCCeEEEEECCCCcc
Confidence            223456777773 3 5555555778888888777664

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.23  E-value=0.76  Score=39.08  Aligned_cols=79  Identities=11%  Similarity=0.215  Sum_probs=51.2

Q ss_pred             EEEEEEcCCCCEEEEeccc-ceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccchhhhh
Q 014005           35 VSAIEFDKTGDYLAVGDRG-GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE  113 (432)
Q Consensus        35 V~~~~fsp~g~~l~t~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~  113 (432)
                      .....+.++|++++.|+.+ ..+.+||..+..-.                         ....+...             
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~-------------------------~~~~~~~~-------------  119 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWI-------------------------PGPDMQVA-------------  119 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEE-------------------------ECCCCSSC-------------
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCccc-------------------------cccccccc-------------
Confidence            3456788999999998765 58999998876421                         11111111             


Q ss_pred             cceeEEEEEEcCCCCEEEEEeCC------CeEEEEEccCcceeeee
Q 014005          114 EKINRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKKIK  153 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~  153 (432)
                      ..-...+.  .+||+.++.++.+      ..+.+||..+.+...+.
T Consensus       120 r~~~~~~~--~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3         120 RGYQSSAT--MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             CSSCEEEE--CTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEET
T ss_pred             ccccceee--ecCCceeeeccccccccccceeeeecCCCCceeecC
Confidence            12234455  5789988888643      46899999988765543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.34  E-value=1.5  Score=38.15  Aligned_cols=244  Identities=9%  Similarity=0.098  Sum_probs=118.2

Q ss_pred             EEEEEEcCCCCEEEEe-----cccceEEEEEecCCcCCCCccccchhhhccccccccccCCcceeeeeecCCccccccch
Q 014005           35 VSAIEFDKTGDYLAVG-----DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS  109 (432)
Q Consensus        35 V~~~~fsp~g~~l~t~-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~  109 (432)
                      +...++||+|+++|.+     +.-..++++|+.+++.+                          ...+.  .        
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~--------------------------~~~i~--~--------  170 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL--------------------------PDVLE--R--------  170 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE--------------------------EEEEE--E--------
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceec--------------------------ccccc--c--------
Confidence            4567889999998753     22347999999998632                          01111  0        


Q ss_pred             hhhhcceeEEEEEEcCCCCEEEEEeCC----------------CeEEEEEccCcceeeeeecCCCCcccccccccccccc
Q 014005          110 LEIEEKINRVRWCAAPNGSMFILSTND----------------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF  173 (432)
Q Consensus       110 ~~~~~~v~~l~~~~s~~~~~l~s~~~d----------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  173 (432)
                          .....+.|  .+|++.|+....+                ..|..|.+.+....-...+....         ....+
T Consensus       171 ----~~~~~~~W--~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d---------~~~~~  235 (430)
T d1qfma1         171 ----VKFSCMAW--THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD---------EPKWM  235 (430)
T ss_dssp             ----ECSCCEEE--CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT---------CTTCE
T ss_pred             ----ccccceEE--cCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCcccccccccccc---------CCceE
Confidence                22356889  8898887765432                25777887765432221111111         00233


Q ss_pred             ccccCCCCCcceecceeec-cceEEEE--eeccccc-----ceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c---CCeE
Q 014005          174 MNEHNPPSFAHGYHLEWTE-NMATKIA--NVGNSVH-----ARCQKVYPHAHDFNINSISNNSDCETFVSA-D---DLRI  241 (432)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~-~~~v~i~--d~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~---d~~i  241 (432)
                      ..+..+.++.++....... .+...+|  ++.....     ....... ........-+.. .++.+++.. .   ++.|
T Consensus       236 ~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L  313 (430)
T d1qfma1         236 GGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI-DNFEGEYDYVTN-EGTVFTFKTNRHSPNYRL  313 (430)
T ss_dssp             EEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE-CSSSSCEEEEEE-ETTEEEEEECTTCTTCEE
T ss_pred             EeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEee-cccccceEEEec-CCceeecccCccccccee
Confidence            4455677888776544322 3333444  4332100     0111222 222222322222 223333333 2   4566


Q ss_pred             EEEeCCCCCce-eeEeecCCCCcCCCCcceEEEEEcCCCCcEEE-EEeCCC--eEEEEEccccccccccceeeccccccc
Q 014005          242 NLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRG--FVRLVDMRQSALCDHSARILRDAAESH  317 (432)
Q Consensus       242 ~lwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~h~~~~  317 (432)
                      ...++...... .+.+      +..+...+..-.+...+ .+|+ ....++  .|+++++.++..    ...+..     
T Consensus       314 ~~~~~~~~~~~~w~~v------i~~~~~~~~~~~~~~~~-~~lvl~~~~~~~~~l~v~~~~~~~~----~~~~~~-----  377 (430)
T d1qfma1         314 INIDFTDPEESKWKVL------VPEHEKDVLEWVACVRS-NFLVLCYLHDVKNTLQLHDLATGAL----LKIFPL-----  377 (430)
T ss_dssp             EEEETTBCCGGGCEEE------ECCCSSCEEEEEEEETT-TEEEEEEEETTEEEEEEEETTTCCE----EEEECC-----
T ss_pred             EEecCCCCccccceEE------ecccCcceeeeEEEEEC-CEEEEEEEcCCEeEEEEEECCCCcE----EEecCC-----
Confidence            66666632221 1221      13344444443444433 4444 444554  588899887654    122211     


Q ss_pred             CCccceeeeecceeEEEEcCCCCEE-EE-ee--C-CeEEEEec
Q 014005          318 GSKSFFTEIIASISDIKFANDGQHL-LS-RD--Y-MNLKVFRY  355 (432)
Q Consensus       318 ~~~~~~~~~~~~v~~~~~s~dg~~l-~s-~~--~-~~i~iwd~  355 (432)
                              ..+.+..+...++...+ ++ .+  . .+++-+|+
T Consensus       378 --------~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl  412 (430)
T d1qfma1         378 --------EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL  412 (430)
T ss_dssp             --------CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred             --------CCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEEC
Confidence                    02455555555554433 22 22  2 78888888

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.06  E-value=0.64  Score=39.11  Aligned_cols=96  Identities=6%  Similarity=0.116  Sum_probs=54.9

Q ss_pred             CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeC---C------------CeEEEEEcccccc
Q 014005          238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---R------------GFVRLVDMRQSAL  302 (432)
Q Consensus       238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---d------------g~i~iwd~~~~~~  302 (432)
                      ..+|.+|++...+..+.....  . ........+.+.+..++ .+++|-..   +            +...+|....+..
T Consensus       123 ~~~ieif~~~~~~~~l~~~~~--v-~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~  198 (340)
T d1v04a_         123 SSTVEVFKFQEEEKSLLHLKT--I-RHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV  198 (340)
T ss_dssp             CCEEEEEEEETTTTEEEEEEE--E-CCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE
T ss_pred             CceeEEEEEeCCCCeEEEEee--c-CCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce
Confidence            467888887633333222100  0 01223457888888888 77776321   1            1223333332221


Q ss_pred             ccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC--CeEEEEec
Q 014005          303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKVFRY  355 (432)
Q Consensus       303 ~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~--~~i~iwd~  355 (432)
                          .....+              -...+.++++||+++|..+..  ++|+.|++
T Consensus       199 ----~~~~~~--------------l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~  235 (340)
T d1v04a_         199 ----RVVAEG--------------FDFANGINISPDGKYVYIAELLAHKIHVYEK  235 (340)
T ss_dssp             ----EEEEEE--------------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             ----EEEcCC--------------CCccceeEECCCCCEEEEEeCCCCeEEEEEe
Confidence                111222              467889999999998877633  89999999

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.34  E-value=2.7  Score=37.93  Aligned_cols=55  Identities=13%  Similarity=0.129  Sum_probs=33.6

Q ss_pred             CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      .|.+.-+|++ +++..-.....   .....+.+     .-.+ .++++|+.||.++.+|.++|++
T Consensus       443 ~G~l~AiD~~-TG~~~W~~~~~---~~~~~g~l-----~Tag-glVf~G~~dg~l~A~Da~tGe~  497 (571)
T d2ad6a1         443 MGQIRAFDLT-TGKAKWTKWEK---FAAWGGTL-----YTKG-GLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             CEEEEEECTT-TCCEEEEEEES---SCCCSBCE-----EETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred             cccEEEeccC-CCceeeEcCCC---CCCCccee-----EecC-CEEEEECCCCeEEEEECCCCcE
Confidence            3567778887 45544333111   01111222     1124 5777899999999999999997

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.07  E-value=2.1  Score=37.36  Aligned_cols=60  Identities=15%  Similarity=0.073  Sum_probs=41.2

Q ss_pred             CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCCCCCceeeEeecCCCC-cCCCCcceEEEEEcCC
Q 014005          218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN-MDDLTEVITSAEFHPI  278 (432)
Q Consensus       218 ~~~i~~~~~~~~~~~l~~~-~d~~i~lwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~  278 (432)
                      -...++|+|.|+++++++- ..|.|++++.+ ++....+..+.... ...-......++|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~-~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECC-CCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4578899999999999888 68999999877 44443333222111 1222356889999996

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=1.8  Score=34.73  Aligned_cols=111  Identities=5%  Similarity=-0.032  Sum_probs=69.7

Q ss_pred             CCeeEEEeCCCCCEEEEE--cCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEe--CCCeEEE
Q 014005          219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRL  294 (432)
Q Consensus       219 ~~i~~~~~~~~~~~l~~~--~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i  294 (432)
                      ..+..+++.+.+..|..+  ..+.|.+.+++ .......+       .........++++|.. .+|....  ..+.|.-
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~-g~~~~~~~-------~~~~~~P~~l~vd~~~-g~ly~~~~~~~~~I~r  147 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKK  147 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEEEEEEETTT-TEEEEEECSSSCEEEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecC-CceEEEEE-------cCCCCCcceEEEEccc-CeEEEeccCCCcceeE
Confidence            456678888766666655  67889999998 33333322       3334567899999976 4444433  3456766


Q ss_pred             EEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeC--CeEEEEec
Q 014005          295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKVFRY  355 (432)
Q Consensus       295 wd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~--~~i~iwd~  355 (432)
                      .++.....     ..+-..            ......++++++.+..|.-++.  +.|...|+
T Consensus       148 ~~~dGs~~-----~~l~~~------------~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~  193 (266)
T d1ijqa1         148 GGLNGVDI-----YSLVTE------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  193 (266)
T ss_dssp             EETTSCCE-----EEEECS------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             eccCCCce-----eccccc------------ccceeeEEEeeccccEEEEecCCcCEEEEEEC
Confidence            67653322     222210            0345688999998776665533  78888888

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=92.99  E-value=2.2  Score=35.76  Aligned_cols=102  Identities=5%  Similarity=0.071  Sum_probs=56.6

Q ss_pred             eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEE--cCCCCc-EEEEEeCCCeEEEEEccc---cccccccceeeccc
Q 014005          240 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCN-LLAYSSSRGFVRLVDMRQ---SALCDHSARILRDA  313 (432)
Q Consensus       240 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~-~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~h  313 (432)
                      +|.+|.+......+..+.........-...+..+|+  +|.... ++++...+|.+..|.+..   +....+.++.|.. 
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-  178 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-  178 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-
Confidence            577777763333333321110000111123667776  665423 566777899999887743   2222223455554 


Q ss_pred             ccccCCccceeeeecceeEEEEcCCCCEEEEeeC-CeEEEEec
Q 014005          314 AESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKVFRY  355 (432)
Q Consensus       314 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~-~~i~iwd~  355 (432)
                                   ...+.++.+.+....|..+.. ..++.++.
T Consensus       179 -------------~~q~EGCVvDde~~~LyisEE~~Giw~~~a  208 (353)
T d1h6la_         179 -------------NSQTEGMAADDEYGSLYIAEEDEAIWKFSA  208 (353)
T ss_dssp             -------------SSCEEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred             -------------CCccceEEEeCCCCcEEEecCccceEEEEe
Confidence                         467889999999888888755 44444443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.56  E-value=0.63  Score=40.64  Aligned_cols=102  Identities=10%  Similarity=0.069  Sum_probs=61.7

Q ss_pred             CeeEEEeCCCCCEEEEE-c-CC----eEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCC----
Q 014005          220 NINSISNNSDCETFVSA-D-DL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----  289 (432)
Q Consensus       220 ~i~~~~~~~~~~~l~~~-~-d~----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----  289 (432)
                      .+...+++|++++++.+ + +|    .++++|+. +++.+...      +..  .....++|.+++ +.|+....+    
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~-tg~~~~~~------i~~--~~~~~~~W~~D~-~~~~Y~~~~~~~~  195 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD-GAKELPDV------LER--VKFSCMAWTHDG-KGMFYNAYPQQDG  195 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT-TTEEEEEE------EEE--ECSCCEEECTTS-SEEEEEECCCCSS
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccC-cceecccc------ccc--ccccceEEcCCC-CEEEEEEeccccC
Confidence            34566789999999976 3 33    69999999 56544311      011  112468999999 766655432    


Q ss_pred             ------------CeEEEEEccccccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          290 ------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       290 ------------g~i~iwd~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                                  ..|..+.+.+.....  ...++.. .          ....+..+..++||++++.
T Consensus       196 ~~~~~~~~~~~~~~v~~h~lgt~~~~d--~~v~~e~-d----------~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         196 KSDGTETSTNLHQKLYYHVLGTDQSED--ILCAEFP-D----------EPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGC--EEEECCT-T----------CTTCEEEEEECTTSCEEEE
T ss_pred             cccccccccCCcceEEEEECCCCcccc--ccccccc-c----------CCceEEeeeccCCcceeeE
Confidence                        257777776544311  2233321 0          0234667888999999864

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.42  E-value=2.3  Score=32.49  Aligned_cols=156  Identities=9%  Similarity=0.074  Sum_probs=90.4

Q ss_pred             ceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccc
Q 014005          115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM  194 (432)
Q Consensus       115 ~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  194 (432)
                      .|.++++   .+....++|+......+|-++.+++.++.....-.            -|.+    -.+.++...+....+
T Consensus       105 RI~S~~y---ddk~vvF~Gased~~~LYviegGklrkL~~vPpFs------------FVtD----I~~d~I~G~g~~~g~  165 (313)
T d2hu7a1         105 RILSGVD---TGEAVVFTGATEDRVALYALDGGGLRELARLPGFG------------FVSD----IRGDLIAGLGFFGGG  165 (313)
T ss_dssp             EEEEEEE---CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCE------------EEEE----EETTEEEEEEEEETT
T ss_pred             EEEEeee---cCceEEEecccCCceEEEEEeCCceeeeccCCCcc------------eEEe----ccCCeEEEEeeecCC
Confidence            4667776   56667888888888999999999987775543211            1111    123333333332233


Q ss_pred             eEEEEeecccccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-c-CC--eEEEEeCCCCCceeeEeecCCCCcCC-CCcc
Q 014005          195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DL--RINLWNLEISDQCFNIVDMKPSNMDD-LTEV  269 (432)
Q Consensus       195 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-d~--~i~lwd~~~~~~~~~~~~~~~~~~~~-~~~~  269 (432)
                      ...++-.+.  ....++.+ ....+.++.....++.+. +++ . -|  ...-+|++  ......+++....+.. ..-.
T Consensus       166 ~~sfF~adl--~SG~lri~-tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~--s~~yerve~P~kd~~sy~p~~  239 (313)
T d2hu7a1         166 RVSLFTSNL--SSGGLRVF-DSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPR--DGSVEDLELPSKDFSSYRPTA  239 (313)
T ss_dssp             EEEEEEEET--TTEEEEEE-CCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTT--TCCEEECCCSSCHHHHHCCSE
T ss_pred             cceEEEEec--ccCCEEEe-cCCCCcccceeEccCcee-eeccCCCCceEEEEEecc--cCceeeeecCcccceeecceE
Confidence            333332221  23345556 556677888888887765 554 2 22  22245766  2333333222111111 1235


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 014005          270 ITSAEFHPIYCNLLAYSSSRGFVRLVD  296 (432)
Q Consensus       270 v~~~~~~p~~~~~l~~~~~dg~i~iwd  296 (432)
                      |+.+-+.|++ ++++.+-.||.-++|+
T Consensus       240 I~~~~Y~Pdd-~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         240 ITWLGYLPDG-RLAVVARREGRSAVFI  265 (313)
T ss_dssp             EEEEEECTTS-CEEEEEEETTEEEEEE
T ss_pred             EEeeeeCCCC-cEEEEEecCCchheee
Confidence            7778899999 8989999999999987

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=90.70  E-value=4  Score=34.05  Aligned_cols=122  Identities=10%  Similarity=0.024  Sum_probs=70.9

Q ss_pred             ccccccC--CCCCc--ceecceeeccceEEEEeeccc----ccceeeEEeecCCCCCeeEEEeCCCCCEEEEE-cCCeEE
Q 014005          172 NFMNEHN--PPSFA--HGYHLEWTENMATKIANVGNS----VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRIN  242 (432)
Q Consensus       172 ~i~~~~~--~~~~~--~~~~~~~~~~~~v~i~d~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~d~~i~  242 (432)
                      .+..+++  ++...  +++....  +|.+..|.+...    ...+.++.+  .....+..+.+......|..+ .+..+.
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k--~G~v~q~~l~~~~~g~v~~~lvr~f--~~~~q~EGCVvDde~~~LyisEE~~Giw  204 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGK--EGEFEQYELNADKNGYISGKKVRAF--KMNSQTEGMAADDEYGSLYIAEEDEAIW  204 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECS--SSEEEEEEEEECTTSSEEEEEEEEE--ECSSCEEEEEEETTTTEEEEEETTTEEE
T ss_pred             cceEEEEEecCCCCeEEEEEEcC--CceEEEEEEEcCCCCceeeEeeecc--CCCCccceEEEeCCCCcEEEecCccceE
Confidence            3556655  55433  2333333  678888876432    234555666  345678899999998899999 777776


Q ss_pred             EEeCCCCCce-eeEeecCCCCcCCCCcceEEEEEcC--CCC-cEEEEEeCCCeEEEEEccc
Q 014005          243 LWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHP--IYC-NLLAYSSSRGFVRLVDMRQ  299 (432)
Q Consensus       243 lwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p--~~~-~~l~~~~~dg~i~iwd~~~  299 (432)
                      .++.+..... ...+...  .-......+-.+++-.  ++. .+|++.-.+++..+||...
T Consensus       205 ~~~a~~~~~~~~~~i~~~--~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         205 KFSAEPDGGSNGTVIDRA--DGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEESSTTSCSCCEEEEEC--SSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             EEEeccCCCccceeeecc--cCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            6665522111 1111000  0112355677777653  221 5556666788999999765

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=85.91  E-value=5.5  Score=35.84  Aligned_cols=24  Identities=8%  Similarity=-0.003  Sum_probs=21.2

Q ss_pred             CCCcEEEEEeCCCeEEEEEcccccc
Q 014005          278 IYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       278 ~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      .+ .++++|+.||.++.+|.++|++
T Consensus       487 ag-glVF~G~~dg~l~A~Da~TGe~  510 (573)
T d1kb0a2         487 AG-NVVFQGTADGRLVAYHAATGEK  510 (573)
T ss_dssp             TT-TEEEEECTTSEEEEEETTTCCE
T ss_pred             cC-CEEEEECCCCeEEEEECCCCcE
Confidence            45 6788899999999999999997

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=84.56  E-value=13  Score=33.06  Aligned_cols=55  Identities=9%  Similarity=0.063  Sum_probs=34.2

Q ss_pred             CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      .|.+.-||+. +++....+...     .+   ..+-.+.-.+ .++++|+.||.++.+|.++|++
T Consensus       437 ~G~l~A~D~~-tGk~~W~~~~~-----~~---~~gg~l~Tag-glVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         437 SGALLAWDPV-KQKAAWKVPYP-----TH---WNGGTLSTAG-NLVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             EEEEEEEETT-TTEEEEEEEES-----SS---CCCCEEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred             ccceEEEeCC-CCeEeeeccCC-----CC---CCCceeEECC-CEEEEECCCCcEEEEECCCCcE
Confidence            3567778888 55554433211     11   1111122234 6777899999999999999997

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.75  E-value=9.5  Score=30.77  Aligned_cols=194  Identities=7%  Similarity=0.098  Sum_probs=109.6

Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCCCcceecceeeccceEEEEeecc
Q 014005          124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN  203 (432)
Q Consensus       124 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~i~d~~~  203 (432)
                      +|..+.++.-+ ..++.++|+++.+  ++..+...            ..|.--.|-.+.......    +..|..|+++.
T Consensus        71 hP~~~IiALra-g~~LQiFnletK~--klks~~~~------------e~VvfWkWis~~~L~lVT----~taVYHW~~~g  131 (327)
T d1utca2          71 NPASKVIALKA-GKTLQIFNIEMKS--KMKAHTMT------------DDVTFWKWISLNTVALVT----DNAVYHWSMEG  131 (327)
T ss_dssp             CSSSSEEEEEE-TTEEEEEETTTTE--EEEEEECS------------SCCCEEEESSSSEEEEEC----SSEEEEEESSS
T ss_pred             CCCCcEEEEec-CCeEEEEehhHhh--hhceEEcC------------CCcEEEEecCCCEEEEEc----CCceEEEcccC
Confidence            67887777766 5689999999887  33333332            244333443332222211    66899999965


Q ss_pred             cccceeeEEeecCC----CCCeeEEEeCCCCCEEE-EE---c----CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceE
Q 014005          204 SVHARCQKVYPHAH----DFNINSISNNSDCETFV-SA---D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT  271 (432)
Q Consensus       204 ~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~-~~---~----d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~  271 (432)
                        ...+.+.+ ..|    ...|-.-..+++.++++ +|   .    .|.+.+|..+  ...-+.+       ++|.+..-
T Consensus       132 --~s~P~k~f-dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e--r~~sQ~i-------eGhaa~F~  199 (327)
T d1utca2         132 --ESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQPI-------EGHAASFA  199 (327)
T ss_dssp             --SCCCEEEE-ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT--TTEEEEE-------CCSEEEEE
T ss_pred             --CCCchhhh-hhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec--cCcCccc-------cceeeeeE
Confidence              34577777 333    24677788899999877 33   2    4677899998  3344444       78877666


Q ss_pred             EEEEcCC--CCcEEEEEe---CCCeEEEEEcccccccc-cc-ceeecccccccCCccceeeeecceeEEEEcCCCCEEEE
Q 014005          272 SAEFHPI--YCNLLAYSS---SRGFVRLVDMRQSALCD-HS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS  344 (432)
Q Consensus       272 ~~~~~p~--~~~~l~~~~---~dg~i~iwd~~~~~~~~-~~-~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s  344 (432)
                      .+.+.-+  ..++|+.+.   ..+++.|.++....... .. .+...- ...|...      .+-.-++..|+.-..+..
T Consensus       200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi-~fppea~------~DFPvamqvs~kygiiyv  272 (327)
T d1utca2         200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPPEAQ------NDFPVAMQISEKHDVVFL  272 (327)
T ss_dssp             EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEEC-CCCTTCT------TCCEEEEEEETTTTEEEE
T ss_pred             EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEE-ECCcccc------CCcEEEEEeeccCCEEEE
Confidence            5555321  113444443   22578888876532110 00 111111 1111111      122346777776555555


Q ss_pred             eeC-CeEEEEec
Q 014005          345 RDY-MNLKVFRY  355 (432)
Q Consensus       345 ~~~-~~i~iwd~  355 (432)
                      -+. |.+++||+
T Consensus       273 iTK~G~i~lyDl  284 (327)
T d1utca2         273 ITKYGYIHLYDL  284 (327)
T ss_dssp             EETTSEEEEEET
T ss_pred             EecCcEEEEEEc
Confidence            433 99999999

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.47  E-value=11  Score=31.50  Aligned_cols=104  Identities=11%  Similarity=0.106  Sum_probs=64.7

Q ss_pred             CeeEEEeCCCCCEEEEEcCCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEccc
Q 014005          220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ  299 (432)
Q Consensus       220 ~i~~~~~~~~~~~l~~~~d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~  299 (432)
                      .|..++|+.+  .++...++.+..++...-.. ....       ..-...+.++.++|.   .++....+|.+.++++..
T Consensus        88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~-~~~~-------~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~  154 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSE-FRTV-------TSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRT  154 (381)
T ss_dssp             TEEEEEEETT--EEEEEESSEEEEEESSSTTC-EEEE-------EECSSCEEEEEECSS---EEEEEETTSEEEEEETTT
T ss_pred             CeEEEEeeCC--EEEEEeCCCEEEEEeecccc-cccc-------ccccccccceecCCc---eeEEEecCCCEEEEEecc
Confidence            5788888644  56666677788888773222 2211       223455788888775   356677789999999987


Q ss_pred             cccccccceeecccccccCCccceeeeecceeEEEEcCCCCEEEEeeCC
Q 014005          300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM  348 (432)
Q Consensus       300 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s~~~~  348 (432)
                      ++.    .....+ ...       ....+.+.+++|++.|+.+++++.+
T Consensus       155 ~~~----~~~~~~-v~~-------~~~~~~~~~v~ws~kgkq~v~~~g~  191 (381)
T d1xipa_         155 KST----KQLAQN-VTS-------FDVTNSQLAVLLKDRSFQSFAWRNG  191 (381)
T ss_dssp             CCE----EEEEES-EEE-------EEECSSEEEEEETTSCEEEEEEETT
T ss_pred             Ccc----ccccCC-cce-------EEecCCceEEEEeCCcEEEEEeCCC
Confidence            653    111111 000       0013568889999999988887543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.29  E-value=15  Score=32.80  Aligned_cols=55  Identities=9%  Similarity=0.014  Sum_probs=34.8

Q ss_pred             CCeEEEEeCCCCCceeeEeecCCCCcCCCCcceEEEEEcCCCCcEEEEEeCCCeEEEEEcccccc
Q 014005          238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL  302 (432)
Q Consensus       238 d~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~  302 (432)
                      .|.+.-+|+. +++..-.....        .++.+-.++..+ .++++|+.||.++.+|.++|++
T Consensus       465 ~G~l~AiD~~-TG~i~W~~~~~--------~p~~~g~lstag-glVF~Gt~dg~l~A~Da~TGe~  519 (582)
T d1flga_         465 VGSLRAMDPV-SGKVVWEHKEH--------LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             SEEEEEECTT-TCCEEEEEEES--------SCCCSCCEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred             CCeEEEEcCC-CCcEEeecCCC--------CCCccceeEEcC-CeEEEeCCCCeEEEEECCCCcE
Confidence            4677778888 55554433111        111111123345 6777899999999999999997

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=81.17  E-value=16  Score=31.47  Aligned_cols=61  Identities=13%  Similarity=0.244  Sum_probs=40.6

Q ss_pred             cceeEEEEEEcCCCCEEEEEeCCCeEEEEEccCcceeeeeecCCCCccccccccccccccccccCCCC
Q 014005          114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS  181 (432)
Q Consensus       114 ~~v~~l~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  181 (432)
                      ..-++|+|  .||+++|++--..|.|++++..++....+.......     .....++....++++|+
T Consensus        27 ~~P~~la~--~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~-----~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLW--GPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIV-----NDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC-----CCTTSSCSEEEEEECTT
T ss_pred             CCceEEEE--eCCCeEEEEEecCCEEEEEECCCCcEeecccCCccc-----cccCCCCceeeEEeCCC
Confidence            45679999  889988777655799999998887765554432110     01122356677888875